Title: Optimal Regression Design under the Second-Order Least Squares
Estimator
Description: With given inputs that include number of points, discrete design space, a measure of skewness, models and parameter value, this package calculates the objective value, optimal designs and plot the equivalence theory under A- and D-optimal criteria under the second-order Least squares estimator. This package is based on the paper "Properties of optimal regression designs under the second-order least squares estimator" by Chi-Kuang Yeh and Julie Zhou (2021) <doi:10.1007/s00362-018-01076-6>.
Author: Chi-Kuang Yeh [aut, cre] ,
Julie Zhou [aut, ctb]
Maintainer: Chi-Kuang Yeh <chi-kuang.yeh@uwaterloo.ca>
Diff between SLSEdesign versions 0.0.1 dated 2024-05-16 and 0.0.2 dated 2024-05-27
DESCRIPTION | 12 +++-- MD5 | 36 ++++++++--------- NAMESPACE | 1 R/Aopt.R | 17 +++----- R/Dopt.R | 12 ++--- R/calc_phiA.R | 10 ++-- R/calc_phiD.R | 6 +- R/plot_direction_Aopt.R | 18 ++++---- R/plot_direction_Dopt.R | 15 +++---- R/plot_weight.R | 2 inst/doc/SLSEdesign.R | 1 inst/doc/SLSEdesign.Rmd | 1 inst/doc/SLSEdesign.html | 95 +++++++++++++++++++++------------------------ man/Aopt.Rd | 12 ++--- man/Dopt.Rd | 12 ++--- man/plot_direction_Aopt.Rd | 16 +++---- man/plot_direction_Dopt.Rd | 16 +++---- man/plot_weight.Rd | 4 - vignettes/SLSEdesign.Rmd | 1 19 files changed, 140 insertions(+), 147 deletions(-)
Title: A Pharmacometrics Data Transformation and Analysis Tool
Description: Exploration of pharmacometrics data involves both general tools (transformation and plotting) and specific techniques (non-compartmental analysis). This kind of exploration is generally accomplished by utilizing different packages. The purpose of 'ruminate' is to create a 'shiny' interface to make these tools more broadly available while creating reproducible results.
Author: John Harrold [aut, cre]
Maintainer: John Harrold <john.m.harrold@gmail.com>
Diff between ruminate versions 0.2.3 dated 2024-05-18 and 0.2.4 dated 2024-05-27
DESCRIPTION | 8 +-- MD5 | 11 ++-- NEWS.md | 8 ++- R/NCA_Server.R | 75 ++++++++++++++++++++------------ README.md | 20 ++++++-- inst/doc/noncompartmental_analysis.html | 5 -- inst/test_data/sparse_data.csv |only 7 files changed, 83 insertions(+), 44 deletions(-)
Title: Antarctic Spatial Data Manipulation
Description: Loads and creates spatial data, including layers and tools that are relevant
to the activities of the Commission for the Conservation of Antarctic Marine Living
Resources. Provides two categories of functions: load functions and create functions.
Load functions are used to import existing spatial layers from the online CCAMLR GIS
such as the ASD boundaries. Create functions are used to create layers from user data
such as polygons and grids.
Author: Stephane Thanassekos [aut, cre],
Keith Reid [aut],
Lucy Robinson [aut],
Michael D. Sumner [ctb],
Roger Bivand [ctb]
Maintainer: Stephane Thanassekos <stephane.thanassekos@ccamlr.org>
Diff between CCAMLRGIS versions 4.1.0 dated 2024-05-06 and 4.1.1 dated 2024-05-27
DESCRIPTION | 8 MD5 | 18 - NAMESPACE | 1 NEWS.md | 6 R/CCAMLRGIS-package.R | 2 R/create.R | 7 R/create_Arrow.R | 71 ++---- README.md | 496 +++++++++++++++++++++++++++++++++++++++--------- inst/doc/CCAMLRGIS.html | 4 man/create_Arrow.Rd | 9 10 files changed, 474 insertions(+), 148 deletions(-)
Title: Pedigree Inference from SNPs
Description: Multi-generational pedigree inference from incomplete data on
hundreds of SNPs, including parentage assignment and sibship clustering.
See Huisman (2017) (<DOI:10.1111/1755-0998.12665>) for more information.
Author: Jisca Huisman [aut, cre]
Maintainer: Jisca Huisman <jisca.huisman@gmail.com>
Diff between sequoia versions 2.9.0 dated 2024-03-01 and 2.11.1 dated 2024-05-27
sequoia-2.11.1/sequoia/DESCRIPTION | 13 sequoia-2.11.1/sequoia/MD5 | 111 sequoia-2.11.1/sequoia/NEWS.md | 10 sequoia-2.11.1/sequoia/R/CalcMaxMismatch.R | 2 sequoia-2.11.1/sequoia/R/CalcOHLLR.R | 4 sequoia-2.11.1/sequoia/R/CalcPairLL.R | 18 sequoia-2.11.1/sequoia/R/CalcRped.R | 2 sequoia-2.11.1/sequoia/R/CheckGeno.R | 33 sequoia-2.11.1/sequoia/R/CheckLifeHist.R | 49 sequoia-2.11.1/sequoia/R/ConfProb.R | 820 +++---- sequoia-2.11.1/sequoia/R/DuplicateCheck.R | 9 sequoia-2.11.1/sequoia/R/ErrToM.R | 18 sequoia-2.11.1/sequoia/R/FindFamilies.R | 4 sequoia-2.11.1/sequoia/R/GenoConvert.R | 457 ++-- sequoia-2.11.1/sequoia/R/GetMaybeRel.R | 26 sequoia-2.11.1/sequoia/R/MkAgePrior.R | 30 sequoia-2.11.1/sequoia/R/PedPolish.R | 6 sequoia-2.11.1/sequoia/R/PedToNum.R | 6 sequoia-2.11.1/sequoia/R/Prepare.R | 7 sequoia-2.11.1/sequoia/R/RelPlot.R | 14 sequoia-2.11.1/sequoia/R/SNPstats.R | 19 sequoia-2.11.1/sequoia/R/SeqListSummary.R | 15 sequoia-2.11.1/sequoia/R/Sequoia_F90wrappers.R | 455 ++- sequoia-2.11.1/sequoia/R/Sequoia_Main.R | 108 sequoia-2.11.1/sequoia/R/SimGeno.R | 57 sequoia-2.11.1/sequoia/R/Utils.R | 2 sequoia-2.11.1/sequoia/R/WriteToFiles.R | 6 sequoia-2.11.1/sequoia/build/vignette.rds |binary sequoia-2.11.1/sequoia/data/FieldMums_griffin.txt |only sequoia-2.11.1/sequoia/data/LH_HSg5.txt |only sequoia-2.11.1/sequoia/data/LH_griffin.txt |only sequoia-2.11.1/sequoia/data/Ped_HSg5.txt |only sequoia-2.11.1/sequoia/data/Ped_griffin.txt |only sequoia-2.11.1/sequoia/inst/doc/PedComp.R | 194 - sequoia-2.11.1/sequoia/inst/doc/PedComp.html | 1596 +++++++------- sequoia-2.11.1/sequoia/inst/doc/quick_start_example1.R | 78 sequoia-2.11.1/sequoia/inst/doc/quick_start_example1.html | 1106 ++++----- sequoia-2.11.1/sequoia/inst/doc/vignette-age.R | 522 ++-- sequoia-2.11.1/sequoia/inst/doc/vignette-age.pdf |binary sequoia-2.11.1/sequoia/inst/doc/vignette-main.R | 391 +-- sequoia-2.11.1/sequoia/inst/doc/vignette-main.Rmd | 158 + sequoia-2.11.1/sequoia/inst/doc/vignette-main.pdf |binary sequoia-2.11.1/sequoia/inst/doc/vignette_mtDNA.pdf |binary sequoia-2.11.1/sequoia/man/CalcMaxMismatch.Rd | 2 sequoia-2.11.1/sequoia/man/CalcOHLLR.Rd | 9 sequoia-2.11.1/sequoia/man/CalcPairLL.Rd | 9 sequoia-2.11.1/sequoia/man/ErrToM.Rd | 18 sequoia-2.11.1/sequoia/man/EstConf.Rd | 3 sequoia-2.11.1/sequoia/man/GenoConvert.Rd | 55 sequoia-2.11.1/sequoia/man/GetMaybeRel.Rd | 9 sequoia-2.11.1/sequoia/man/MkGenoErrors.Rd | 3 sequoia-2.11.1/sequoia/man/SimGeno.Rd | 9 sequoia-2.11.1/sequoia/man/SnpStats.Rd | 11 sequoia-2.11.1/sequoia/man/sequoia.Rd | 9 sequoia-2.11.1/sequoia/src/Sequoia.f90 | 994 +++++--- sequoia-2.11.1/sequoia/src/pretty_R_print.c |only sequoia-2.11.1/sequoia/vignettes/vignette-main.Rmd | 158 + sequoia-2.9.0/sequoia/data/FieldMums_griffin.txt.gz |only sequoia-2.9.0/sequoia/data/LH_HSg5.txt.gz |only sequoia-2.9.0/sequoia/data/LH_griffin.txt.gz |only sequoia-2.9.0/sequoia/data/Ped_HSg5.txt.gz |only sequoia-2.9.0/sequoia/data/Ped_griffin.txt.gz |only 62 files changed, 4129 insertions(+), 3506 deletions(-)
Title: Sparse Linear Algebra
Description: Some basic linear algebra functionality for sparse matrices is
provided: including Cholesky decomposition and backsolving as well as
standard R subsetting and Kronecker products.
Author: Roger Koenker [cre, aut],
Pin Tian Ng [ctb] ,
Yousef Saad [ctb] ,
Ben Shaby [ctb]
Maintainer: Roger Koenker <rkoenker@uiuc.edu>
Diff between SparseM versions 1.81 dated 2021-02-18 and 1.82 dated 2024-05-27
SparseM-1.81/SparseM/inst/doc/SparseM.R |only SparseM-1.81/SparseM/inst/doc/SparseM.Rnw |only SparseM-1.81/SparseM/vignettes/SparseM.Rnw |only SparseM-1.82/SparseM/DESCRIPTION | 8 + SparseM-1.82/SparseM/MD5 | 21 ++-- SparseM-1.82/SparseM/NAMESPACE | 22 ++--- SparseM-1.82/SparseM/R/SparseM.R | 6 - SparseM-1.82/SparseM/build/vignette.rds |binary SparseM-1.82/SparseM/inst/ChangeLog | 5 + SparseM-1.82/SparseM/inst/doc/SparseM.pdf |binary SparseM-1.82/SparseM/inst/doc/SparseM.pdf.asis |only SparseM-1.82/SparseM/man/lsq.Rd | 16 +-- SparseM-1.82/SparseM/src/cholesky.f | 101 ++++++++++++++++-------- SparseM-1.82/SparseM/vignettes/SparseM.pdf.asis |only 14 files changed, 110 insertions(+), 69 deletions(-)
Title: PLINK 2 Binary (.pgen) Reader
Description: A thin wrapper over PLINK 2's core libraries which provides an R
interface for reading .pgen files. A minimal .pvar loader is also
included. Chang et al. (2015) \doi{10.1186/s13742-015-0047-8}.
Author: Christopher Chang [aut, cre],
Eric Biggers [ctb, cph] ,
Yann Collet [ctb] ,
Meta Platforms, Inc. [cph] ,
Evan Nemerson [ctb, cph] ,
Przemyslaw Skibinski [ctb] ,
Nick Terrell [ctb]
Maintainer: Christopher Chang <chrchang@alumni.caltech.edu>
Diff between pgenlibr versions 0.3.5 dated 2023-06-12 and 0.3.6 dated 2024-05-27
pgenlibr-0.3.5/pgenlibr/src/libdeflate/lib/crc32_table.h |only pgenlibr-0.3.5/pgenlibr/src/libdeflate/lib/crc32_vec_template.h |only pgenlibr-0.3.5/pgenlibr/src/libdeflate/lib/unaligned.h |only pgenlibr-0.3.5/pgenlibr/src/simde/arm/sve |only pgenlibr-0.3.5/pgenlibr/src/simde/arm/sve.h |only pgenlibr-0.3.5/pgenlibr/src/simde/x86/avx512 |only pgenlibr-0.3.5/pgenlibr/src/simde/x86/avx512.h |only pgenlibr-0.3.6/pgenlibr/DESCRIPTION | 13 pgenlibr-0.3.6/pgenlibr/MD5 | 658 - pgenlibr-0.3.6/pgenlibr/NAMESPACE | 29 pgenlibr-0.3.6/pgenlibr/NEWS.md | 6 pgenlibr-0.3.6/pgenlibr/R/RcppExports.R | 4 pgenlibr-0.3.6/pgenlibr/R/zzz.R |only pgenlibr-0.3.6/pgenlibr/build/partial.rdb |binary pgenlibr-0.3.6/pgenlibr/configure | 23 pgenlibr-0.3.6/pgenlibr/configure.ac | 43 pgenlibr-0.3.6/pgenlibr/man/ReadHardcalls.Rd | 2 pgenlibr-0.3.6/pgenlibr/man/ReadIntList.Rd | 2 pgenlibr-0.3.6/pgenlibr/src/Makevars.in | 2 pgenlibr-0.3.6/pgenlibr/src/Makevars.win | 14 pgenlibr-0.3.6/pgenlibr/src/include/SFMT.h | 4 pgenlibr-0.3.6/pgenlibr/src/include/pgenlib_misc.cc | 1155 ++ pgenlibr-0.3.6/pgenlibr/src/include/pgenlib_misc.h | 240 pgenlibr-0.3.6/pgenlibr/src/include/pgenlib_read.cc | 1084 +- pgenlibr-0.3.6/pgenlibr/src/include/pgenlib_read.h | 57 pgenlibr-0.3.6/pgenlibr/src/include/pgenlib_write.cc | 337 pgenlibr-0.3.6/pgenlibr/src/include/pgenlib_write.h | 31 pgenlibr-0.3.6/pgenlibr/src/include/plink2_base.cc | 49 pgenlibr-0.3.6/pgenlibr/src/include/plink2_base.h | 1335 ++- pgenlibr-0.3.6/pgenlibr/src/include/plink2_bgzf.cc | 44 pgenlibr-0.3.6/pgenlibr/src/include/plink2_bgzf.h | 7 pgenlibr-0.3.6/pgenlibr/src/include/plink2_bitmap.cc | 4 pgenlibr-0.3.6/pgenlibr/src/include/plink2_bitmap.h | 2 pgenlibr-0.3.6/pgenlibr/src/include/plink2_bits.cc | 857 + pgenlibr-0.3.6/pgenlibr/src/include/plink2_bits.h | 106 pgenlibr-0.3.6/pgenlibr/src/include/plink2_fmath.cc | 2 pgenlibr-0.3.6/pgenlibr/src/include/plink2_fmath.h | 4 pgenlibr-0.3.6/pgenlibr/src/include/plink2_stats.cc | 1674 ++- pgenlibr-0.3.6/pgenlibr/src/include/plink2_stats.h | 28 pgenlibr-0.3.6/pgenlibr/src/include/plink2_string.cc | 44 pgenlibr-0.3.6/pgenlibr/src/include/plink2_string.h | 48 pgenlibr-0.3.6/pgenlibr/src/include/plink2_text.cc | 16 pgenlibr-0.3.6/pgenlibr/src/include/plink2_text.h | 4 pgenlibr-0.3.6/pgenlibr/src/include/plink2_thread.cc | 2 pgenlibr-0.3.6/pgenlibr/src/include/plink2_thread.h | 9 pgenlibr-0.3.6/pgenlibr/src/include/plink2_zstfile.cc | 6 pgenlibr-0.3.6/pgenlibr/src/include/plink2_zstfile.h | 7 pgenlibr-0.3.6/pgenlibr/src/libdeflate/common_defs.h | 156 pgenlibr-0.3.6/pgenlibr/src/libdeflate/lib/adler32.c | 7 pgenlibr-0.3.6/pgenlibr/src/libdeflate/lib/arm/adler32_impl.h | 132 pgenlibr-0.3.6/pgenlibr/src/libdeflate/lib/arm/arm_cpu_features.c | 28 pgenlibr-0.3.6/pgenlibr/src/libdeflate/lib/arm/cpu_features.h | 155 pgenlibr-0.3.6/pgenlibr/src/libdeflate/lib/arm/crc32_impl.h | 142 pgenlibr-0.3.6/pgenlibr/src/libdeflate/lib/arm/crc32_pmull_helpers.h | 58 pgenlibr-0.3.6/pgenlibr/src/libdeflate/lib/arm/crc32_pmull_wide.h | 34 pgenlibr-0.3.6/pgenlibr/src/libdeflate/lib/arm/matchfinder_impl.h | 13 pgenlibr-0.3.6/pgenlibr/src/libdeflate/lib/bt_matchfinder.h | 5 pgenlibr-0.3.6/pgenlibr/src/libdeflate/lib/cpu_features_common.h | 6 pgenlibr-0.3.6/pgenlibr/src/libdeflate/lib/crc32.c | 7 pgenlibr-0.3.6/pgenlibr/src/libdeflate/lib/decompress_template.h | 13 pgenlibr-0.3.6/pgenlibr/src/libdeflate/lib/deflate_compress.c | 812 + pgenlibr-0.3.6/pgenlibr/src/libdeflate/lib/deflate_decompress.c | 114 pgenlibr-0.3.6/pgenlibr/src/libdeflate/lib/gzip_compress.c | 6 pgenlibr-0.3.6/pgenlibr/src/libdeflate/lib/gzip_decompress.c | 6 pgenlibr-0.3.6/pgenlibr/src/libdeflate/lib/hc_matchfinder.h | 5 pgenlibr-0.3.6/pgenlibr/src/libdeflate/lib/ht_matchfinder.h | 4 pgenlibr-0.3.6/pgenlibr/src/libdeflate/lib/lib_common.h | 41 pgenlibr-0.3.6/pgenlibr/src/libdeflate/lib/matchfinder_common.h | 4 pgenlibr-0.3.6/pgenlibr/src/libdeflate/lib/utils.c | 38 pgenlibr-0.3.6/pgenlibr/src/libdeflate/lib/x86/adler32_impl.h | 171 pgenlibr-0.3.6/pgenlibr/src/libdeflate/lib/x86/cpu_features.h | 107 pgenlibr-0.3.6/pgenlibr/src/libdeflate/lib/x86/crc32_impl.h | 11 pgenlibr-0.3.6/pgenlibr/src/libdeflate/lib/x86/crc32_pclmul_template.h | 69 pgenlibr-0.3.6/pgenlibr/src/libdeflate/lib/x86/decompress_impl.h | 11 pgenlibr-0.3.6/pgenlibr/src/libdeflate/lib/x86/x86_cpu_features.c | 113 pgenlibr-0.3.6/pgenlibr/src/libdeflate/lib/zlib_compress.c | 6 pgenlibr-0.3.6/pgenlibr/src/libdeflate/lib/zlib_decompress.c | 6 pgenlibr-0.3.6/pgenlibr/src/libdeflate/libdeflate.h | 205 pgenlibr-0.3.6/pgenlibr/src/pgenlib_ffi_support.cpp | 8 pgenlibr-0.3.6/pgenlibr/src/pgenlib_ffi_support.h | 2 pgenlibr-0.3.6/pgenlibr/src/pgenlibr.cpp | 4 pgenlibr-0.3.6/pgenlibr/src/pvar_ffi_support.cpp | 2 pgenlibr-0.3.6/pgenlibr/src/pvar_ffi_support.h | 2 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon.h | 115 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/abal.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/abal_high.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/abd.h | 140 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/abdl_high.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/abs.h | 67 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/add.h | 264 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/addhn_high.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/addlv.h | 24 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/addv.h | 5 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/aes.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/and.h | 32 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/bcax.h | 32 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/bsl.h | 151 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/cadd_rot270.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/cadd_rot90.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/cale.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/calt.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/ceq.h | 97 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/ceqz.h | 59 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/cgez.h | 59 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/cgt.h | 66 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/cgtz.h | 59 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/cle.h | 63 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/clez.h | 61 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/clt.h | 66 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/cltz.h | 59 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/cmla.h | 86 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/cmla_lane.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/cmla_rot180.h | 91 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/cmla_rot180_lane.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/cmla_rot270.h | 90 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/cmla_rot270_lane.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/cmla_rot90.h | 90 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/cmla_rot90_lane.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/cnt.h | 29 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/combine.h | 131 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/copy_lane.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/crc32.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/create.h | 75 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/cvt.h | 1045 ++ pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/cvt_n.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/cvtm.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/cvtn.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/cvtp.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/div.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/dot.h | 69 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/dot_lane.h | 158 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/dup_lane.h | 499 + pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/dup_n.h | 187 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/eor.h | 202 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/ext.h | 286 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/fma.h | 51 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/fma_lane.h | 116 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/fma_n.h | 37 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/fmlal.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/fmlsl.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/fms.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/fms_lane.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/fms_n.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/get_high.h | 111 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/get_lane.h | 198 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/get_low.h | 111 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/hadd.h | 60 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/ld1.h | 341 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/ld1_dup.h | 141 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/ld1_lane.h | 166 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/ld1_x2.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/ld1_x3.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/ld1_x4.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/ld1q_x2.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/ld1q_x3.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/ld1q_x4.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/ld2.h | 620 + pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/ld2_dup.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/ld2_lane.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/ld3.h | 628 + pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/ld3_dup.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/ld3_lane.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/ld4.h | 551 + pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/ld4_dup.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/ld4_lane.h | 232 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/max.h | 71 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/maxnm.h | 79 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/maxnmv.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/maxv.h | 65 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/min.h | 83 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/minnm.h | 79 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/minnmv.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/minv.h | 65 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/mla_lane.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/mlal_high_lane.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/mls.h | 18 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/mls_lane.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/mlsl_high_lane.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/mmlaq.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/mul.h | 227 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/mul_lane.h | 425 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/mul_n.h | 29 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/mull.h | 57 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/mull_high.h | 53 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/mull_high_lane.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/mull_high_n.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/mulx.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/mulx_lane.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/mulx_n.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/mvn.h | 47 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/neg.h | 61 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/padd.h | 29 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/paddl.h | 2 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/pmax.h | 29 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/pmaxnm.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/pmin.h | 29 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/pminnm.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/qabs.h | 2 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/qdmlal.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/qdmlal_high.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/qdmlal_high_lane.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/qdmlal_high_n.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/qdmlal_lane.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/qdmlal_n.h |only 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pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/rnd64x.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/rnd64z.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/rnda.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/rndi.h | 61 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/rndm.h | 61 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/rndn.h | 65 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/rndp.h | 61 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/rndx.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/rshl.h | 42 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/rshr_n.h | 15 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/rshrn_high_n.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/rsqrte.h | 84 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/rsqrts.h | 61 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/rsubhn.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/rsubhn_high.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/set_lane.h | 185 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/sha1.h |only 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pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/trn1.h | 190 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/trn2.h | 190 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/tst.h | 97 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/types.h | 499 + pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/uqadd.h | 12 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/usdot.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/usdot_lane.h |only pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/uzp.h | 91 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/uzp1.h | 205 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/uzp2.h | 205 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/xar.h | 4 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/zip.h | 91 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/zip1.h | 195 pgenlibr-0.3.6/pgenlibr/src/simde/arm/neon/zip2.h | 183 pgenlibr-0.3.6/pgenlibr/src/simde/check.h | 2 pgenlibr-0.3.6/pgenlibr/src/simde/debug-trap.h | 2 pgenlibr-0.3.6/pgenlibr/src/simde/hedley.h | 1 pgenlibr-0.3.6/pgenlibr/src/simde/simde-aes.h |only 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pgenlibr-0.3.6/pgenlibr/src/simde/x86/sse2.h | 427 pgenlibr-0.3.6/pgenlibr/src/simde/x86/sse3.h | 18 pgenlibr-0.3.6/pgenlibr/src/simde/x86/sse4.1.h | 125 pgenlibr-0.3.6/pgenlibr/src/simde/x86/sse4.2.h | 2 pgenlibr-0.3.6/pgenlibr/src/simde/x86/ssse3.h | 12 pgenlibr-0.3.6/pgenlibr/src/simde/x86/svml.h | 48 pgenlibr-0.3.6/pgenlibr/src/simde/x86/xop.h | 2 348 files changed, 28246 insertions(+), 4711 deletions(-)
Title: Model-Based Optimization for 'mlr3' Through 'mlrMBO'
Description: The 'mlrMBO' package can ordinarily not be used for optimization within 'mlr3', because of
incompatibilities of their respective class systems. 'mlrintermbo' offers a compatibility
interface that provides 'mlrMBO' as an 'mlr3tuning' 'Tuner' object, for tuning of machine
learning algorithms within 'mlr3', as well as a 'bbotk' 'Optimizer' object for optimization
of general objective functions using the 'bbotk' black box optimization framework. The
control parameters of 'mlrMBO' are faithfully reproduced as a 'paradox' 'ParamSet'.
Author: Martin Binder [aut, cre]
Maintainer: Martin Binder <developer.mb706@doublecaret.com>
Diff between mlrintermbo versions 0.5.0 dated 2021-03-01 and 0.5.1 dated 2024-05-27
DESCRIPTION | 11 +- MD5 | 26 ++--- NEWS.md | 9 + R/CapsuledMlr3Learner.R | 2 R/ParamHelpersParamSet.R | 29 +++-- R/TunerInterMBO.R | 31 +++++- R/optimize.R | 91 +++++++++++------- R/paramset.R | 174 +++++++++++++---------------------- README.md | 29 +++++ man/OptimizerInterMBO.Rd | 32 +++++- man/mlrintermbo-package.Rd | 4 tests/testthat/test_custom_learner.R | 8 - tests/testthat/test_fuzzing.R | 51 ++++------ tests/testthat/test_mbo.R | 16 +-- 14 files changed, 287 insertions(+), 226 deletions(-)
Title: Interface with 'Nominatim' API Service
Description: Lite interface for getting data from 'OSM' service
'Nominatim' <https://nominatim.org/release-docs/latest/>. Extract
coordinates from addresses, find places near a set of coordinates and
return spatial objects on 'sf' format.
Author: Diego Hernangomez [aut, cre, cph]
,
Jindra Lacko [ctb, rev] ,
Alex White [ctb],
OpenStreetMap [cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between nominatimlite versions 0.3.0 dated 2024-03-01 and 0.4.0 dated 2024-05-27
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Title: Analyzing the Orientation of Maximum Horizontal Stress
Description: Models the direction of the maximum horizontal stress using
relative plate motion parameters. Statistical algorithms to evaluate
the modeling results compared with the observed data. Provides plots
to visualize the results. Methods described in Stephan et al. (2023)
<doi:10.1038/s41598-023-42433-2> and Wdowinski (1998)
<doi:10.1016/S0079-1946(98)00091-3>.
Author: Tobias Stephan [aut, cre]
Maintainer: Tobias Stephan <tobias.stephan1@yahoo.com>
Diff between tectonicr versions 0.3.1 dated 2024-05-16 and 0.3.2 dated 2024-05-27
tectonicr-0.3.1/tectonicr/vignettes/tectonicr_references.bib.sav.tmp |only tectonicr-0.3.2/tectonicr/DESCRIPTION | 10 tectonicr-0.3.2/tectonicr/MD5 | 99 tectonicr-0.3.2/tectonicr/NAMESPACE | 4 tectonicr-0.3.2/tectonicr/NEWS.md | 170 - tectonicr-0.3.2/tectonicr/R/data_stress.R | 160 - tectonicr-0.3.2/tectonicr/R/draw_eulerpole.R | 540 +-- tectonicr-0.3.2/tectonicr/R/interpolation.R | 1262 ++++---- tectonicr-0.3.2/tectonicr/R/model_shmax.R | 800 ++--- tectonicr-0.3.2/tectonicr/R/nuvel1_plates.R | 42 tectonicr-0.3.2/tectonicr/R/pb_distance.R | 440 +- tectonicr-0.3.2/tectonicr/R/plates.R | 88 tectonicr-0.3.2/tectonicr/R/plotting.R | 5 tectonicr-0.3.2/tectonicr/R/stat_tests.R | 1500 +++++----- tectonicr-0.3.2/tectonicr/R/statistics.R | 1316 ++++---- tectonicr-0.3.2/tectonicr/R/various.R | 370 +- tectonicr-0.3.2/tectonicr/README.md | 174 - tectonicr-0.3.2/tectonicr/build/partial.rdb |binary tectonicr-0.3.2/tectonicr/build/vignette.rds |binary tectonicr-0.3.2/tectonicr/inst/CITATION | 40 tectonicr-0.3.2/tectonicr/inst/doc/A_tectonicr.Rmd | 450 +-- tectonicr-0.3.2/tectonicr/inst/doc/A_tectonicr.html | 16 tectonicr-0.3.2/tectonicr/inst/doc/B_datasets.Rmd | 776 ++--- tectonicr-0.3.2/tectonicr/inst/doc/B_datasets.html | 16 tectonicr-0.3.2/tectonicr/inst/doc/C_stress_trajectories.Rmd | 510 +-- tectonicr-0.3.2/tectonicr/inst/doc/C_stress_trajectories.html | 9 tectonicr-0.3.2/tectonicr/inst/doc/D_statistics.Rmd | 304 +- tectonicr-0.3.2/tectonicr/inst/doc/D_statistics.html | 16 tectonicr-0.3.2/tectonicr/inst/doc/E_interpolation.Rmd | 376 +- tectonicr-0.3.2/tectonicr/inst/doc/E_interpolation.html | 14 tectonicr-0.3.2/tectonicr/man/PoR_map.Rd | 108 tectonicr-0.3.2/tectonicr/man/axes.Rd | 88 tectonicr-0.3.2/tectonicr/man/circular_dispersion_boot.Rd | 108 tectonicr-0.3.2/tectonicr/man/dispersion.Rd | 134 tectonicr-0.3.2/tectonicr/man/kernel_dispersion.Rd | 164 - tectonicr-0.3.2/tectonicr/man/line_azimuth.Rd | 74 tectonicr-0.3.2/tectonicr/man/parse_wsm.Rd | 68 tectonicr-0.3.2/tectonicr/man/roll_circstats.Rd | 152 - tectonicr-0.3.2/tectonicr/man/rolling_test_dist.Rd | 228 - tectonicr-0.3.2/tectonicr/man/rose_baseplot.Rd | 98 tectonicr-0.3.2/tectonicr/man/stress_colors.Rd | 34 tectonicr-0.3.2/tectonicr/man/superimposed_shmax.Rd | 90 tectonicr-0.3.2/tectonicr/man/tectonicr.colors.Rd | 92 tectonicr-0.3.2/tectonicr/man/vonmises.Rd | 70 tectonicr-0.3.2/tectonicr/tests/testthat/test_that.R | 306 +- tectonicr-0.3.2/tectonicr/vignettes/A_tectonicr.Rmd | 450 +-- tectonicr-0.3.2/tectonicr/vignettes/B_datasets.Rmd | 776 ++--- tectonicr-0.3.2/tectonicr/vignettes/C_stress_trajectories.Rmd | 510 +-- tectonicr-0.3.2/tectonicr/vignettes/D_statistics.Rmd | 304 +- tectonicr-0.3.2/tectonicr/vignettes/E_interpolation.Rmd | 376 +- tectonicr-0.3.2/tectonicr/vignettes/install_extras | 2 51 files changed, 6876 insertions(+), 6863 deletions(-)
Title: Functions to Support Extension Education Program Evaluation
Description: Functions and datasets to support Summary and Analysis of
Extension Program Evaluation in R, and An R
Companion for the Handbook of Biological Statistics.
Vignettes are available at <https://rcompanion.org>.
Author: Salvatore Mangiafico [aut, cre]
Maintainer: Salvatore Mangiafico <mangiafico@njaes.rutgers.edu>
Diff between rcompanion versions 2.4.35 dated 2024-02-17 and 2.4.36 dated 2024-05-27
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- NEWS.md | 5 +++++ R/accuracy.r | 5 +++-- R/pairwiseNominalIndependence.r | 18 ++++++++++-------- R/rcompanion.R | 2 -- inst/CITATION | 4 ++-- man/accuracy.Rd | 5 +++-- man/pairwiseNominalIndependence.Rd | 3 +++ man/rcompanion-package.Rd | 1 - 10 files changed, 40 insertions(+), 31 deletions(-)
Title: Statistical Analysis in Epidemiology
Description: Functions for demographic and epidemiological analysis in
the Lexis diagram, i.e. register and cohort follow-up data. In
particular representation, manipulation, rate estimation and
simulation for multistate data - the Lexis suite of functions, which
includes interfaces to 'mstate', 'etm' and 'cmprsk' packages.
Contains functions for Age-Period-Cohort and Lee-Carter modeling and
a function for interval censored data and some useful functions for
tabulation and plotting, as well as a number of epidemiological data
sets.
Author: Bendix Carstensen [aut, cre],
Martyn Plummer [aut],
Esa Laara [ctb],
Michael Hills [ctb]
Maintainer: Bendix Carstensen <b@bxc.dk>
Diff between Epi versions 2.48 dated 2024-03-31 and 2.50 dated 2024-05-27
Epi-2.48/Epi/build |only Epi-2.48/Epi/inst/doc/addLexis.rnw |only Epi-2.48/Epi/inst/doc/crisk.rnw |only Epi-2.48/Epi/inst/doc/flup.rnw |only Epi-2.48/Epi/inst/doc/simLexis.rnw |only Epi-2.48/Epi/inst/doc/yll.rnw |only Epi-2.50/Epi/DESCRIPTION | 8 Epi-2.50/Epi/MD5 | 57 Epi-2.50/Epi/NAMESPACE | 1 Epi-2.50/Epi/R/boxes.MS.R | 25 Epi-2.50/Epi/R/foreign.R | 39 Epi-2.50/Epi/R/legendbox.R |only Epi-2.50/Epi/inst/doc/addLexis.R | 89 Epi-2.50/Epi/inst/doc/addLexis.pdf |binary Epi-2.50/Epi/inst/doc/crisk.R | 388 - Epi-2.50/Epi/inst/doc/crisk.pdf |binary Epi-2.50/Epi/inst/doc/flup.R | 138 Epi-2.50/Epi/inst/doc/flup.pdf |10026 +++++++++++++++++------------------ Epi-2.50/Epi/inst/doc/simLexis.R | 82 Epi-2.50/Epi/inst/doc/simLexis.pdf |binary Epi-2.50/Epi/inst/doc/yll.R | 29 Epi-2.50/Epi/inst/doc/yll.pdf |binary Epi-2.50/Epi/man/boxes.MS.Rd | 2 Epi-2.50/Epi/man/legendbox.Rd | 19 Epi-2.50/Epi/vignettes/addLexis.rnw | 70 Epi-2.50/Epi/vignettes/addLexis.tex |only Epi-2.50/Epi/vignettes/crisk.rnw | 729 +- Epi-2.50/Epi/vignettes/crisk.tex |only Epi-2.50/Epi/vignettes/flup.rnw | 13 Epi-2.50/Epi/vignettes/flup.tex |only Epi-2.50/Epi/vignettes/rwall.bat |only Epi-2.50/Epi/vignettes/simLexis.rnw | 36 Epi-2.50/Epi/vignettes/simLexis.tex |only Epi-2.50/Epi/vignettes/topreport.tex | 2 Epi-2.50/Epi/vignettes/yll.rnw | 16 Epi-2.50/Epi/vignettes/yll.tex |only 36 files changed, 6098 insertions(+), 5671 deletions(-)
Title: Event Table Functions for 'rxode2'
Description: Provides the event table and support functions needed for
'rxode2' (Wang, Hallow and James (2016) <doi:10.1002/psp4.12052>) and 'nlmixr2'
(Fidler et al (2019) <doi:10.1002/psp4.12445>).
This split will reduce computational burden of recompiling 'rxode2'.
Author: Matthew L. Fidler [aut, cre] ,
Wenping Wang [ctb],
Fuji Goro [ctb],
Morwenn [ctb],
Igor Kushnir [ctb],
Omar Elashkar [ctb]
Maintainer: Matthew L. Fidler <matthew.fidler@gmail.com>
Diff between rxode2et versions 2.0.12 dated 2024-01-30 and 2.0.13 dated 2024-05-27
DESCRIPTION | 8 +- MD5 | 12 +-- NEWS.md | 4 + R/rxode2et_md5.R | 2 man/reexports.Rd | 1 src/et.cpp | 34 ++++++-- tests/testthat/test-et.R | 179 +++++++++++++++++++++++++++++++++++++++++++++++ 7 files changed, 219 insertions(+), 21 deletions(-)
Title: Auto-Generate Changelog using Conventional Commits
Description: Automatically generate a changelog file (NEWS.md /
CHANGELOG.md) from the git history using conventional commit messages
(<https://www.conventionalcommits.org/en/v1.0.0/>).
Author: Lorenz A. Kapsner [cre, aut, cph]
Maintainer: Lorenz A. Kapsner <lorenz.kapsner@gmail.com>
Diff between autonewsmd versions 0.0.6 dated 2023-04-13 and 0.0.7 dated 2024-05-27
autonewsmd-0.0.6/autonewsmd/inst/templates/news-md-template.Rmd |only autonewsmd-0.0.7/autonewsmd/DESCRIPTION | 10 autonewsmd-0.0.7/autonewsmd/MD5 | 37 autonewsmd-0.0.7/autonewsmd/NAMESPACE | 14 autonewsmd-0.0.7/autonewsmd/R/autonewsmd.R | 4 autonewsmd-0.0.7/autonewsmd/R/generate_autonewsmd.R | 397 ++-- autonewsmd-0.0.7/autonewsmd/R/init_autonewsmd.R | 124 - autonewsmd-0.0.7/autonewsmd/R/mdtemplate_tags_decreasing.R | 89 autonewsmd-0.0.7/autonewsmd/R/prepare_rda.R |only autonewsmd-0.0.7/autonewsmd/R/write_autonewsmd.R | 231 +- autonewsmd-0.0.7/autonewsmd/R/zzz.R | 10 autonewsmd-0.0.7/autonewsmd/build/vignette.rds |binary autonewsmd-0.0.7/autonewsmd/inst/doc/autonewsmd.R | 4 autonewsmd-0.0.7/autonewsmd/inst/doc/autonewsmd.Rmd | 474 ++--- autonewsmd-0.0.7/autonewsmd/inst/doc/autonewsmd.html | 266 +- autonewsmd-0.0.7/autonewsmd/inst/templates/news-md-template.qmd |only autonewsmd-0.0.7/autonewsmd/man/autonewsmd.Rd | 918 +++++----- autonewsmd-0.0.7/autonewsmd/tests/testthat.R | 24 autonewsmd-0.0.7/autonewsmd/tests/testthat/test-autonewsmd.R | 420 ++-- autonewsmd-0.0.7/autonewsmd/tests/testthat/test-lints.R | 58 autonewsmd-0.0.7/autonewsmd/vignettes/autonewsmd.Rmd | 474 ++--- 21 files changed, 1801 insertions(+), 1753 deletions(-)
Title: Latent Interaction (and Moderation) Analysis in Structural
Equation Models (SEM)
Description: Estimation of interaction (i.e., moderation) effects between latent variables
in structural equation models (SEM).
The supported methods are:
The constrained approach (Algina & Moulder, 2001).
The unconstrained approach (Marsh et al., 2004).
The residual centering approach (Little et al., 2006).
The double centering approach (Lin et al., 2010).
The latent moderated structural equations (LMS) approach (Klein & Moosbrugger, 2000).
The quasi-maximum likelihood (QML) approach (Klein & Muthén, 2007) (temporarily unavailable)
The constrained- unconstrained, residual- and double centering- approaches
are estimated via 'lavaan' (Rosseel, 2012), whilst the LMS- and QML- approaches
are estimated via by ModSEM it self. Alternatively model can be
estimated via 'Mplus' (Muthén & Muthén, 1998-2017).
References:
Algina, J., & Moulder, B. C. (2001).
<doi:10.1207/S15328007SEM0801_3>.
"A note on estimating the Jöreskog-Yang model for latent variable interaction using 'LISREL' 8 [...truncated...]
Author: Kjell Solem Slupphaug [aut, cre]
Maintainer: Kjell Solem Slupphaug <slupphaugkjell@gmail.com>
Diff between modsem versions 0.1.2 dated 2024-04-17 and 0.1.3 dated 2024-05-27
modsem-0.1.2/modsem/R/LavSyntaxFunctionCalls.R |only modsem-0.1.2/modsem/R/callLmsQml.R |only modsem-0.1.2/modsem/R/constraintsCA.R |only modsem-0.1.2/modsem/R/createLabels.R |only modsem-0.1.2/modsem/R/emLms.R |only modsem-0.1.2/modsem/R/equationsLms.R |only modsem-0.1.2/modsem/R/equationsQml.R |only modsem-0.1.2/modsem/R/estQml.R |only modsem-0.1.2/modsem/R/getModelSpecification.R |only modsem-0.1.2/modsem/R/methodSettings.R |only modsem-0.1.2/modsem/R/modelLmsQml.R |only modsem-0.1.2/modsem/R/mplus.R |only modsem-0.1.2/modsem/R/optimizeLmsQml.R |only modsem-0.1.2/modsem/R/parceling.R |only modsem-0.1.2/modsem/R/pathTracer.R |only modsem-0.1.2/modsem/R/residualCov.R |only modsem-0.1.2/modsem/R/runMultipleModels.R |only modsem-0.1.2/modsem/R/summaryLmsQml.R |only modsem-0.1.2/modsem/R/utils.R |only modsem-0.1.2/modsem/R/utilsLms.R |only modsem-0.1.2/modsem/R/utilsQml.R |only modsem-0.1.2/modsem/tests/testthat/mplusResults_806c95cb59657018957d8abde0909092.dat |only modsem-0.1.2/modsem/tests/testthat/mplusResults_9ae1075d88813d2b05dddbfb8fa37861.dat |only modsem-0.1.2/modsem/tests/testthat/mplusResults_e489e24f2bf1ad6c94963f7e17f04900.dat |only modsem-0.1.2/modsem/tests/testthat/mplusResults_e9480bee59c66cd9a48f4c25fe540f12.dat |only modsem-0.1.2/modsem/tests/testthat/testAutoInteractions.R |only modsem-0.1.2/modsem/tests/testthat/testManualInteractions.R |only modsem-0.1.2/modsem/tests/testthat/testQML.R |only modsem-0.1.2/modsem/tests/testthat/testTpb.R |only modsem-0.1.2/modsem/tests/testthat/testingLMS.R |only modsem-0.1.2/modsem/tests/testthat/testingMplus.R |only modsem-0.1.2/modsem/tests/testthat/testingSyntax.R |only modsem-0.1.3/modsem/DESCRIPTION | 8 modsem-0.1.3/modsem/MD5 | 98 +- modsem-0.1.3/modsem/NAMESPACE | 13 modsem-0.1.3/modsem/R/RcppExports.R | 4 modsem-0.1.3/modsem/R/constraints_pi_ca.R |only modsem-0.1.3/modsem/R/create_labels_pi_ca.R |only modsem-0.1.3/modsem/R/datasets.R | 71 + modsem-0.1.3/modsem/R/equations_lms.R |only modsem-0.1.3/modsem/R/equations_qml.R |only modsem-0.1.3/modsem/R/est_lms.R |only modsem-0.1.3/modsem/R/est_qml.R |only modsem-0.1.3/modsem/R/generics_lms_qml.R |only modsem-0.1.3/modsem/R/generics_modsem_mplus.R |only modsem-0.1.3/modsem/R/generics_modsem_pi.R |only modsem-0.1.3/modsem/R/lav_syntax_functions.R |only modsem-0.1.3/modsem/R/method_settings_pi.R |only modsem-0.1.3/modsem/R/model_lms_qml.R |only modsem-0.1.3/modsem/R/model_pi.R |only modsem-0.1.3/modsem/R/modsem.R | 437 ---------- modsem-0.1.3/modsem/R/modsem_lms_qml.R |only modsem-0.1.3/modsem/R/modsem_mplus.R |only modsem-0.1.3/modsem/R/modsem_pi.R |only modsem-0.1.3/modsem/R/optimize_lms_qml.R |only modsem-0.1.3/modsem/R/parser.R | 6 modsem-0.1.3/modsem/R/residual_cov_pi.R |only modsem-0.1.3/modsem/R/run_multiple_models.R |only modsem-0.1.3/modsem/R/trace_paths_wright.R |only modsem-0.1.3/modsem/R/utils_lms.R |only modsem-0.1.3/modsem/R/utils_pi.R |only modsem-0.1.3/modsem/R/utils_qml.R |only modsem-0.1.3/modsem/README.md | 2 modsem-0.1.3/modsem/build/partial.rdb |binary modsem-0.1.3/modsem/data/jordan.rda |only modsem-0.1.3/modsem/man/figures |only modsem-0.1.3/modsem/man/jordan.Rd |only modsem-0.1.3/modsem/man/modsem.Rd | 65 - modsem-0.1.3/modsem/man/modsem_lms_qml.Rd |only modsem-0.1.3/modsem/man/modsem_mplus.Rd |only modsem-0.1.3/modsem/man/modsem_pi.Rd |only modsem-0.1.3/modsem/man/summary.Rd | 17 modsem-0.1.3/modsem/man/tracePath.Rd | 2 modsem-0.1.3/modsem/src/RcppExports.cpp | 13 modsem-0.1.3/modsem/src/equationsLMS.cpp | 43 modsem-0.1.3/modsem/tests/testthat/mplusResults.inp | 9 modsem-0.1.3/modsem/tests/testthat/mplusResults.out | 17 modsem-0.1.3/modsem/tests/testthat/test_lav_models.R |only modsem-0.1.3/modsem/tests/testthat/test_lms.R |only modsem-0.1.3/modsem/tests/testthat/test_mplus.R |only modsem-0.1.3/modsem/tests/testthat/test_qml.R |only modsem-0.1.3/modsem/tests/testthat/test_quadratic_effects.R |only modsem-0.1.3/modsem/tests/testthat/test_syntax.R |only modsem-0.1.3/modsem/tests/testthat/test_tpb.R |only 84 files changed, 219 insertions(+), 586 deletions(-)
Title: Shiny Apps for Lateral Flow Assays
Description: Shiny apps for the quantitative analysis of images from lateral flow assays (LFAs). The images are segmented and background corrected and color intensities are extracted. The apps can be used to import and export intensity data and to calibrate LFAs by means of linear, loess, or gam models. The calibration models can further be saved and applied to intensity data from new images for determining concentrations.
Author: Filip Paskali [aut, cre] ,
Weronika Schary [aut] ,
Matthias Kohl [aut]
Maintainer: Filip Paskali <Filip.Paskali@gmail.com>
Diff between LFApp versions 1.4 dated 2023-11-06 and 1.4.1 dated 2024-05-27
DESCRIPTION | 8 ++++---- MD5 | 24 ++++++++++++------------ NEWS | 5 +++++ R/analysis_mobile_server.R | 1 - R/analysis_mobile_ui.R | 8 -------- R/cal_mobile_server.R | 1 - R/cal_mobile_ui.R | 7 ------- R/core_mobile_server.R | 1 - R/core_mobile_ui.R | 5 ----- R/quan_mobile_server.R | 1 - R/quan_mobile_ui.R | 6 ------ build/vignette.rds |binary inst/doc/LFApp.html | 4 ++-- 13 files changed, 23 insertions(+), 48 deletions(-)
Title: Lipid Annotation for LC-MS/MS DDA or DIA Data
Description: Lipid annotation in untargeted LC-MS lipidomics based on fragmentation rules. Alcoriza-Balaguer MI, Garcia-Canaveras JC, Lopez A, Conde I, Juan O, Carretero J, Lahoz A (2019) <doi:10.1021/acs.analchem.8b03409>.
Author: M Isabel Alcoriza-Balaguer
Maintainer: M Isabel Alcoriza-Balaguer <maribel_alcoriza@iislafe.es>
Diff between LipidMS versions 3.0.4 dated 2024-02-19 and 3.0.5 dated 2024-05-27
DESCRIPTION | 6 +- MD5 | 18 ++++---- NAMESPACE | 2 R/LipidMS.R | 2 R/LipidMSapp.R | 2 build/vignette.rds |binary inst/LipidMSapp/server.R | 82 +++++++++++++++++++++++++------------- inst/LipidMSapp/ui.R | 40 +++++++++++++++--- src/Peakpicking.cpp | 100 ++++++++++++++++++++++++----------------------- src/clustdist.cpp | 14 +++--- 10 files changed, 163 insertions(+), 103 deletions(-)
Title: Estimation in DID with Multiple Groups and Periods
Description: Estimate the effect of a treatment on an outcome in sharp Difference-in-Difference designs with multiple groups and periods.
It computes the DIDM estimator introduced in Section 4 of "Two-Way Fixed Effects Estimators with Heterogeneous
Treatment Effects" (Chaisemartin, D'Haultfoeuille (2020) <doi:10.1257/aer.20181169>), which
generalizes the standard DID estimator with two groups, two periods and a binary treatment to situations
with many groups,many periods and a potentially non-binary treatment. For each pair of consecutive time
periods t-1 and t and for each value of the treatment d, the package computes a DID estimator comparing
the outcome evolution among the switchers, the groups whose treatment changes from d to some other value
between t-1 and t, to the same evolution among control groups whose treatment is equal to d both in t-1 and t.
Then the DIDM estimator is equal to the average of those DIDs across all pairs of consecutive time periods and
across all values of the [...truncated...]
Author: Shuo Zhang [aut],
Clement de Chaisemartin [aut],
Diego Ciccia [cre]
Maintainer: Diego Ciccia <diego.ciccia@sciencespo.fr>
Diff between DIDmultiplegt versions 0.1.3 dated 2024-02-29 and 0.1.4 dated 2024-05-27
DESCRIPTION | 6 +++--- MD5 | 4 ++-- man/did_multiplegt.Rd | 2 ++ 3 files changed, 7 insertions(+), 5 deletions(-)
Title: 'WhiteboxTools' R Frontend
Description: An R frontend for the 'WhiteboxTools' library, which is an advanced geospatial data analysis platform developed by Prof. John Lindsay at the University of Guelph's Geomorphometry and Hydrogeomatics Research Group. 'WhiteboxTools' can be used to perform common geographical information systems (GIS) analysis operations, such as cost-distance analysis, distance buffering, and raster reclassification. Remote sensing and image processing tasks include image enhancement (e.g. panchromatic sharpening, contrast adjustments), image mosaicing, numerous filtering operations, simple classification (k-means), and common image transformations. 'WhiteboxTools' also contains advanced tooling for spatial hydrological analysis (e.g. flow-accumulation, watershed delineation, stream network analysis, sink removal), terrain analysis (e.g. common terrain indices such as slope, curvatures, wetness index, hillshading; hypsometric analysis; multi-scale topographic position analysis), and LiDAR data processing. [...truncated...]
Author: Qiusheng Wu [aut],
Andrew Brown [ctb, cre]
Maintainer: Andrew Brown <brown.andrewg@gmail.com>
Diff between whitebox versions 2.3.4 dated 2023-11-18 and 2.4.0 dated 2024-05-27
DESCRIPTION | 11 LICENSE | 4 MD5 | 54 - NEWS.md | 6 R/math_stat_analysis.R | 4 R/stream_network_analysis.R | 8 R/terrain_analysis.R | 2 R/wbt.R | 5 README.md | 79 - build/partial.rdb |binary build/vignette.rds |binary data/wbttoolparameters.rda |binary data/wbttools.rda |binary inst/doc/datasets.R | 4 inst/doc/datasets.html | 503 ++++----- inst/doc/demo.R | 12 inst/doc/demo.Rmd | 2 inst/doc/demo.html | 1598 +++++++++++++++--------------- inst/doc/wbt-method.R | 4 inst/doc/wbt-method.html | 450 ++++---- man/figures/README-terra-plot-facc-1.jpeg |binary man/wbt_breakline_mapping.Rd | 2 man/wbt_conditioned_latin_hypercube.Rd | 4 man/wbt_vector_stream_network_analysis.Rd | 6 man/wbttoolparameters.Rd | 2 man/wbttools.Rd | 2 man/whitebox-package.Rd | 1 vignettes/demo.Rmd | 2 28 files changed, 1356 insertions(+), 1409 deletions(-)
Title: Unit Root and Cointegration Tests for Time Series Data
Description: Unit root and cointegration tests encountered in applied
econometric analysis are implemented.
Author: Bernhard Pfaff [aut, cre],
Eric Zivot [ctb],
Matthieu Stigler [ctb]
Maintainer: Bernhard Pfaff <bernhard@pfaffikus.de>
Diff between urca versions 1.3-3 dated 2022-08-29 and 1.3-4 dated 2024-05-27
DESCRIPTION | 8 - MD5 | 30 ++--- data/Raotbl1.rda |binary data/Raotbl2.rda |binary data/Raotbl4.rda |binary data/Raotbl5.rda |binary data/Raotbl6.rda |binary data/Raotbl7.rda |binary data/denmark.rda |binary data/ecb.rda |binary data/finland.rda |binary data/nporg.rda |binary inst/CITATION | 8 - man/Denmark.Rd | 4 man/Finland.Rd | 3 src/UnitRootMacKinnon.f | 252 +++++++++++++++++------------------------------- 16 files changed, 114 insertions(+), 191 deletions(-)
Title: Evaluation of Surrogate Endpoints in Clinical Trials
Description: In a clinical trial, it frequently occurs that the most credible
outcome to evaluate the effectiveness of a new therapy (the true endpoint) is
difficult to measure. In such a situation, it can be an effective strategy to
replace the true endpoint by a (bio)marker that is easier to measure and that
allows for a prediction of the treatment effect on the true endpoint (a
surrogate endpoint). The package 'Surrogate' allows for an evaluation of the
appropriateness of a candidate surrogate endpoint based on the meta-analytic,
information-theoretic, and causal-inference frameworks. Part of this software
has been developed using funding provided from the European Union's Seventh
Framework Programme for research, technological development and demonstration
(Grant Agreement no 602552), the Special Research Fund (BOF) of Hasselt
University (BOF-number: BOF2OCPO3), GlaxoSmithKline Biologicals, Baekeland
Mandaat (HBC.2022.0145), and Johnson & Johnson Innovative Medicine.
Author: Wim Van Der Elst [cre, aut],
Florian Stijven [aut],
Fenny Ong [aut],
Paul Meyvisch [aut],
Alvaro Poveda [aut],
Ariel Alonso [aut],
Hannah Ensor [aut],
Christoper Weir [aut],
Geert Molenberghs [aut]
Maintainer: Wim Van Der Elst <wim.vanderelst@gmail.com>
Diff between Surrogate versions 3.2.5 dated 2024-03-19 and 3.2.6 dated 2024-05-27
Surrogate-3.2.5/Surrogate/R/Summary.SPF.BinCont.R |only Surrogate-3.2.5/Surrogate/R/plot.SPPBinCont.R |only Surrogate-3.2.5/Surrogate/man/SPP.BinCont.Rd |only Surrogate-3.2.5/Surrogate/man/plot.ICABinCont.Rd |only Surrogate-3.2.5/Surrogate/man/plot.SPPBinCont.Rd |only Surrogate-3.2.6/Surrogate/DESCRIPTION | 8 Surrogate-3.2.6/Surrogate/MD5 | 16 - Surrogate-3.2.6/Surrogate/NEWS.md | 5 Surrogate-3.2.6/Surrogate/R/SPF.BinCont.R | 221 +++++++++++++++++----- Surrogate-3.2.6/Surrogate/R/plot_SPF.BinCont.R |only Surrogate-3.2.6/Surrogate/R/summary_SPFBinCont.R |only Surrogate-3.2.6/Surrogate/man/SPF.BinCont.Rd |only Surrogate-3.2.6/Surrogate/man/plot.ICA.BinCont.Rd |only Surrogate-3.2.6/Surrogate/man/plot.SPF.BinCont.Rd |only 14 files changed, 188 insertions(+), 62 deletions(-)
Title: Spatio-Temporal Analysis of Point Patterns on Linear Networks
Description: Statistical analysis of spatio-temporal point processes on linear networks. This packages provides tools to visualise and analyse spatio-temporal point patterns on linear networks using first- and second-order summary statistics.
Author: Mehdi Moradi [aut, cre] ,
Ottmar Cronie [ctb],
Jorge Mateu [ctb]
Maintainer: Mehdi Moradi <m2.moradi@yahoo.com>
Diff between stlnpp versions 0.3.10 dated 2024-02-16 and 0.4.0 dated 2024-05-27
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NAMESPACE | 4 +++- R/densityVoronoi.stlpp.R | 2 +- R/tpp.R | 1 + 5 files changed, 14 insertions(+), 11 deletions(-)
Title: Mobile Ready 'shiny' Apps with Standalone Capabilities
Description: Develop outstanding 'shiny' apps for 'iOS' and 'Android' as well as beautiful 'shiny' gadgets.
'shinyMobile' is built on top of the latest 'Framework7' template <https://framework7.io>.
Discover 14 new input widgets (sliders, vertical sliders, stepper,
grouped action buttons, toggles, picker, smart select, ...), 2 themes (light and dark),
12 new widgets (expandable cards, badges, chips, timelines, gauges, progress bars, ...)
combined with the power of server-side notifications such as alerts, modals, toasts,
action sheets, sheets (and more) as well as 3 layouts (single, tabs and split).
Author: David Granjon [aut, cre],
Veerle van Leemput [aut],
AthlyticZ [fnd],
Victor Perrier [aut],
John Coene [ctb],
Isabelle Rudolf [aut],
Dieter Menne [ctb],
Marvelapp [ctb, cph] ,
Vladimir Kharlampidi [ctb, cph]
Maintainer: David Granjon <dgranjon@ymail.com>
Diff between shinyMobile versions 1.0.1 dated 2024-03-01 and 2.0.0 dated 2024-05-27
shinyMobile-1.0.1/shinyMobile/R/f7Appbar.R |only shinyMobile-1.0.1/shinyMobile/R/f7Menu.R |only shinyMobile-1.0.1/shinyMobile/R/f7Shadow.R |only shinyMobile-1.0.1/shinyMobile/R/framework7-dependencies.R |only shinyMobile-1.0.1/shinyMobile/R/manifest.R |only shinyMobile-1.0.1/shinyMobile/inst/examples/chat_widget |only shinyMobile-1.0.1/shinyMobile/inst/examples/gallery/rsconnect |only shinyMobile-1.0.1/shinyMobile/inst/examples/pullToRefresh/rsconnect |only shinyMobile-1.0.1/shinyMobile/inst/examples/tab_layout/rsconnect |only shinyMobile-1.0.1/shinyMobile/inst/framework7-5.7.14 |only shinyMobile-1.0.1/shinyMobile/inst/shinyMobile-1.0.1 |only shinyMobile-1.0.1/shinyMobile/inst/tests |only shinyMobile-1.0.1/shinyMobile/man/add_framework7_deps.Rd |only shinyMobile-1.0.1/shinyMobile/man/appbar.Rd |only shinyMobile-1.0.1/shinyMobile/man/createRadioOptions.Rd |only shinyMobile-1.0.1/shinyMobile/man/f7-deprecated.Rd |only shinyMobile-1.0.1/shinyMobile/man/f7BlockFooter.Rd |only shinyMobile-1.0.1/shinyMobile/man/f7BlockTitle.Rd |only shinyMobile-1.0.1/shinyMobile/man/f7Found.Rd |only shinyMobile-1.0.1/shinyMobile/man/f7HideOnEnable.Rd |only shinyMobile-1.0.1/shinyMobile/man/f7HideOnSearch.Rd |only shinyMobile-1.0.1/shinyMobile/man/f7NotFound.Rd |only shinyMobile-1.0.1/shinyMobile/man/f7Password.Rd |only shinyMobile-1.0.1/shinyMobile/man/f7SearchIgnore.Rd |only shinyMobile-1.0.1/shinyMobile/man/f7Searchbar.Rd |only shinyMobile-1.0.1/shinyMobile/man/f7SearchbarTrigger.Rd |only shinyMobile-1.0.1/shinyMobile/man/f7Segment.Rd |only shinyMobile-1.0.1/shinyMobile/man/f7Slide.Rd |only shinyMobile-1.0.1/shinyMobile/man/f7Tabs.Rd |only shinyMobile-1.0.1/shinyMobile/man/textarea.Rd |only shinyMobile-1.0.1/shinyMobile/tests/testthat/test-f7Appbar.R |only shinyMobile-2.0.0/shinyMobile/DESCRIPTION | 21 shinyMobile-2.0.0/shinyMobile/MD5 | 635 +- shinyMobile-2.0.0/shinyMobile/NAMESPACE | 28 shinyMobile-2.0.0/shinyMobile/NEWS.md | 102 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shinyMobile-2.0.0/shinyMobile/R/f7Icon.R | 80 shinyMobile-2.0.0/shinyMobile/R/f7Link.R | 62 shinyMobile-2.0.0/shinyMobile/R/f7List.R | 769 -- shinyMobile-2.0.0/shinyMobile/R/f7Login.R | 366 - shinyMobile-2.0.0/shinyMobile/R/f7Messages.R | 172 shinyMobile-2.0.0/shinyMobile/R/f7Navbar.R | 402 - shinyMobile-2.0.0/shinyMobile/R/f7Notif.R | 7 shinyMobile-2.0.0/shinyMobile/R/f7Page.R | 491 - shinyMobile-2.0.0/shinyMobile/R/f7Panel.R | 205 shinyMobile-2.0.0/shinyMobile/R/f7PhotoBrowser.R | 48 shinyMobile-2.0.0/shinyMobile/R/f7Popover.R | 199 shinyMobile-2.0.0/shinyMobile/R/f7Popup.R | 94 shinyMobile-2.0.0/shinyMobile/R/f7Preloader.R | 207 shinyMobile-2.0.0/shinyMobile/R/f7Progress.R | 67 shinyMobile-2.0.0/shinyMobile/R/f7Searchbar.R | 201 shinyMobile-2.0.0/shinyMobile/R/f7Sheet.R | 218 shinyMobile-2.0.0/shinyMobile/R/f7Skeleton.R | 95 shinyMobile-2.0.0/shinyMobile/R/f7Swipeout.R | 168 shinyMobile-2.0.0/shinyMobile/R/f7Swiper.R | 144 shinyMobile-2.0.0/shinyMobile/R/f7TapHold.R | 30 shinyMobile-2.0.0/shinyMobile/R/f7Timeline.R | 67 shinyMobile-2.0.0/shinyMobile/R/f7Toast.R | 27 shinyMobile-2.0.0/shinyMobile/R/f7Toolbar.R | 59 shinyMobile-2.0.0/shinyMobile/R/f7Tooltip.R | 102 shinyMobile-2.0.0/shinyMobile/R/f7Treeview.R |only shinyMobile-2.0.0/shinyMobile/R/f7VirtualList.R |only shinyMobile-2.0.0/shinyMobile/R/onLoad.R | 10 shinyMobile-2.0.0/shinyMobile/R/pwa-dependencies.R | 17 shinyMobile-2.0.0/shinyMobile/R/shinyMobile-dependencies.R | 12 shinyMobile-2.0.0/shinyMobile/R/shinyMobile-package.R |only shinyMobile-2.0.0/shinyMobile/R/update-app.R | 121 shinyMobile-2.0.0/shinyMobile/R/utils.R | 128 shinyMobile-2.0.0/shinyMobile/README.md | 66 shinyMobile-2.0.0/shinyMobile/build/vignette.rds |binary shinyMobile-2.0.0/shinyMobile/inst/doc/inputs-layout.R |only shinyMobile-2.0.0/shinyMobile/inst/doc/inputs-layout.Rmd |only shinyMobile-2.0.0/shinyMobile/inst/doc/inputs-layout.html |only shinyMobile-2.0.0/shinyMobile/inst/doc/lists.R |only 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Title: Unified Framework for Numerical Optimizers
Description: Provides a unified object-oriented framework for numerical
optimizers in R. Allows for both minimization and maximization with any
optimizer, optimization over more than one function argument, measuring of
computation time, setting a time limit for long optimization tasks.
Author: Lennart Oelschlaeger [aut, cre]
,
Marius Oetting [ctb]
Maintainer: Lennart Oelschlaeger <oelschlaeger.lennart@gmail.com>
Diff between optimizeR versions 1.0.5 dated 2024-02-28 and 1.1.0 dated 2024-05-27
optimizeR-1.0.5/optimizeR/R/backward_compatibility.R |only optimizeR-1.0.5/optimizeR/tests/testthat/_snaps/backward_compatibility.md |only optimizeR-1.0.5/optimizeR/tests/testthat/test-backward_compatibility.R |only optimizeR-1.1.0/optimizeR/DESCRIPTION | 6 optimizeR-1.1.0/optimizeR/MD5 | 32 - optimizeR-1.1.0/optimizeR/NEWS.md | 8 optimizeR-1.1.0/optimizeR/R/legacy.R |only optimizeR-1.1.0/optimizeR/R/objective.R | 70 +- optimizeR-1.1.0/optimizeR/R/optimizer.R | 37 + optimizeR-1.1.0/optimizeR/README.md | 18 optimizeR-1.1.0/optimizeR/man/Objective.Rd | 31 - optimizeR-1.1.0/optimizeR/man/Optimizer.Rd | 70 ++ optimizeR-1.1.0/optimizeR/man/apply_optimizer.Rd | 88 +- optimizeR-1.1.0/optimizeR/man/define_optimizer.Rd | 308 +++++----- optimizeR-1.1.0/optimizeR/man/figures/README-plot-ackley-1.png |binary optimizeR-1.1.0/optimizeR/man/new_optimizer.Rd | 190 +++--- optimizeR-1.1.0/optimizeR/man/validate_optimizer.Rd | 92 +- optimizeR-1.1.0/optimizeR/tests/testthat/_snaps/legacy.md |only optimizeR-1.1.0/optimizeR/tests/testthat/test-legacy.R |only optimizeR-1.1.0/optimizeR/tests/testthat/test-objective.R | 6 20 files changed, 547 insertions(+), 409 deletions(-)
Title: Color Palettes Inspired by Video Games
Description: Palettes based on video games.
Author: Nathan Constantine-Cooke [aut, cre]
,
Hugh Warden [ctb]
Maintainer: Nathan Constantine-Cooke <nathan.constantine-cooke@ed.ac.uk>
Diff between gameR versions 0.0.5 dated 2023-03-29 and 0.0.6 dated 2024-05-27
DESCRIPTION | 8 +-- MD5 | 41 ++++++++--------- NEWS.md | 5 ++ R/palettes.R | 1 README.md | 72 ++++++++++++++++-------------- build/vignette.rds |binary inst/doc/gameR.R | 4 - inst/doc/gameR.Rmd | 14 +++-- inst/doc/gameR.html | 19 +++---- man/figures/README-unnamed-chunk-15-1.png |binary man/figures/README-unnamed-chunk-16-1.png |binary man/figures/README-unnamed-chunk-17-1.png |binary man/figures/README-unnamed-chunk-18-1.png |binary man/figures/README-unnamed-chunk-19-1.png |binary man/figures/README-unnamed-chunk-20-1.png |binary man/figures/README-unnamed-chunk-21-1.png |binary man/figures/README-unnamed-chunk-22-1.png |binary man/figures/README-unnamed-chunk-23-1.png |binary man/figures/README-unnamed-chunk-24-1.png |only man/gameR_cols.Rd | 2 man/gameR_cont.Rd | 2 vignettes/gameR.Rmd | 14 +++-- 22 files changed, 102 insertions(+), 80 deletions(-)
Title: Estimation in Difference-in-Difference Designs with Multiple
Groups and Periods
Description: Estimation of event-study Difference-in-Difference (DID) estimators in designs with multiple groups and periods, and with a potentially non-binary treatment that may increase or decrease multiple times.
Author: Diego Ciccia [aut, cre],
Felix Knau [aut],
Melitine Malezieux [aut],
Doulo Sow [aut],
Clement de Chaisemartin [aut]
Maintainer: Diego Ciccia <diego.ciccia@sciencespo.fr>
Diff between DIDmultiplegtDYN versions 1.0.10 dated 2024-05-15 and 1.0.11 dated 2024-05-27
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/did_multiplegt_dyn.R | 2 +- man/did_multiplegt_dyn.Rd | 2 +- 4 files changed, 8 insertions(+), 8 deletions(-)
More information about DIDmultiplegtDYN at CRAN
Permanent link
Title: Summarises Package & Function Usage
Description: Consistent with 'knitr' syntax highlighting, 'usedthese' adds
a summary table of package & function usage to a Quarto document and
enables aggregation of usage across a website.
Author: Carl Goodwin [aut, cre, cph]
Maintainer: Carl Goodwin <carl.goodwin@quantumjitter.com>
Diff between usedthese versions 0.3.3 dated 2023-06-15 and 0.4.0 dated 2024-05-27
DESCRIPTION | 41 ++++++++++++------------- MD5 | 18 +++++------ NEWS.md | 11 ++++-- README.md | 12 +++++-- build/vignette.rds |binary inst/doc/multipage.R | 2 - inst/doc/multipage.html | 30 +++++++++--------- inst/doc/usedthese.R | 2 - inst/doc/usedthese.html | 64 ++++++++++++++++++++-------------------- tests/testthat/test-used_here.R | 10 +++--- 10 files changed, 99 insertions(+), 91 deletions(-)
Title: Regression Modeling Strategies
Description: Regression modeling, testing, estimation, validation,
graphics, prediction, and typesetting by storing enhanced model design
attributes in the fit. 'rms' is a collection of functions that
assist with and streamline modeling. It also contains functions for
binary and ordinal logistic regression models, ordinal models for
continuous Y with a variety of distribution families, and the Buckley-James
multiple regression model for right-censored responses, and implements
penalized maximum likelihood estimation for logistic and ordinary
linear models. 'rms' works with almost any regression model, but it
was especially written to work with binary or ordinal regression
models, Cox regression, accelerated failure time models,
ordinary linear models, the Buckley-James model, generalized least
squares for serially or spatially correlated observations, generalized
linear models, and quantile regression.
Author: Frank E Harrell Jr <fh@fharrell.com>
Maintainer: Frank E Harrell Jr <fh@fharrell.com>
Diff between rms versions 6.8-0 dated 2024-03-11 and 6.8-1 dated 2024-05-27
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- NAMESPACE | 4 ++-- NEWS | 5 +++++ R/LRchunktest.r | 6 +++--- R/anova.rms.s | 2 +- R/predictrms.s | 2 +- R/rmsMisc.s | 21 ++++++++++++++++++++- R/validate.cph.s | 10 +++++----- man/cph.Rd | 2 +- man/validate.Rd | 2 +- man/validate.cph.Rd | 8 ++++---- 12 files changed, 58 insertions(+), 34 deletions(-)
Title: A Pseudo-Random Number Generator
Description: Provides functions for generating pseudo-random numbers that follow a uniform distribution [0,1]. Randomness tests were conducted using the National Institute of Standards and Technology test suite<https://csrc.nist.gov/pubs/sp/800/22/r1/upd1/final>, along with additional tests. The sequence generated depends on the initial values and parameters. The package includes a linear congruence map as the decision map and three chaotic maps to generate the pseudo-random sequence, which follow a uniform distribution. Other distributions can be generated from the uniform distribution using the Inversion Principle Method and BOX-Muller transformation. Small perturbations in seed values result in entirely different sequences of numbers due to the sensitive nature of the maps being used. The chaotic nature of the maps helps achieve randomness in the generator. Additionally, the generator is capable of producing random bits.
Author: Sajad Ahmad Mir [aut, cre] ,
Dr. Puneet Sharma [aut]
Maintainer: Sajad Ahmad Mir <mir.1@iitj.ac.in>
Diff between PRNG versions 0.0.1 dated 2024-05-26 and 0.0.2 dated 2024-05-27
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- tests/testthat/test-all.R | 27 +++++++++++++++++++++------ 3 files changed, 27 insertions(+), 12 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-08-21 1.1-4
2019-07-23 1.1-3
2018-06-22 1.1-2
2018-05-09 1.1.1
2018-04-27 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-10-28 0.3-5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-03-02 2.9.3.1
2023-02-07 2.9.3
2022-11-01 2.9.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-04-08 2.1.2
2024-04-05 2.1.1
2024-03-28 2.1.0
2024-02-27 2.0.0
2023-10-31 1.0.1
2023-10-20 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-08-22 2.7-8
2023-06-19 2.7-7
2020-03-12 2.7-6
2019-07-18 2.7-5
2018-08-24 2.7-4
2018-06-13 2.7-2
2018-04-18 2.7-1
2013-07-29 2.7
2013-06-17 2.6
2011-08-20 2.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-10-20 2.0.2
2023-10-11 2.0.1
2023-08-17 2.0.0
2023-02-17 1.0.5
2022-08-30 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-11-02 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-11-27 2.0.5
2023-10-02 2.0.4
2022-04-11 2.0.3
2021-06-03 2.0.2
2020-10-29 2.0.1
2020-06-11 2.0
2018-10-12 1.0.9
2018-08-19 1.0.8
2018-06-06 1.0.7
2015-07-15 1.0.6
2014-12-05 1.0.5
2014-03-17 1.0.4
2014-03-12 1.0.3
2014-01-12 1.0.2
2013-11-12 1.0.1
2013-10-03 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-10-13 0.5-9
2023-04-14 0.5-8
2022-12-01 0.5-3
2022-11-15 0.4-13
2022-10-02 0.4-11
2022-08-07 0.4-9
2022-04-09 0.4-6
2021-12-03 0.3-5
2021-09-29 0.3-2
2021-05-31 0.2-3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-05-13 0.2.1
Title: SQLite Interface for R
Description: Embeds the SQLite database engine in R and provides an
interface compliant with the DBI package. The source for the SQLite
engine and for various extensions in a recent version is included.
System libraries will never be consulted because this package relies
on static linking for the plugins it includes; this also ensures a
consistent experience across all installations.
Author: Kirill Mueller [aut, cre] ,
Hadley Wickham [aut],
David A. James [aut],
Seth Falcon [aut],
D. Richard Hipp [ctb] ,
Dan Kennedy [ctb] ,
Joe Mistachkin [ctb] ,
SQLite Authors [ctb] ,
Liam Healy [ctb] ,
R Consortium [fnd],
RStudio [cph]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between RSQLite versions 2.3.6 dated 2024-03-31 and 2.3.7 dated 2024-05-27
RSQLite-2.3.6/RSQLite/R/names.R |only RSQLite-2.3.7/RSQLite/DESCRIPTION | 16 RSQLite-2.3.7/RSQLite/MD5 | 24 RSQLite-2.3.7/RSQLite/NEWS.md | 21 RSQLite-2.3.7/RSQLite/R/dbColumnInfo_SQLiteResult.R | 1 RSQLite-2.3.7/RSQLite/R/dbExistsTable_SQLiteConnection_Id.R |only RSQLite-2.3.7/RSQLite/R/dbFetch_SQLiteResult.R | 2 RSQLite-2.3.7/RSQLite/build/vignette.rds |binary RSQLite-2.3.7/RSQLite/inst/doc/RSQLite.html | 44 RSQLite-2.3.7/RSQLite/man/SQLiteConnection-class.Rd | 5 RSQLite-2.3.7/RSQLite/src/vendor/extensions/series.c | 120 RSQLite-2.3.7/RSQLite/src/vendor/sqlite3/sqlite3.c | 8660 +++++++----- RSQLite-2.3.7/RSQLite/src/vendor/sqlite3/sqlite3.h | 114 RSQLite-2.3.7/RSQLite/tests/testthat/test-encoding.R | 8 14 files changed, 5511 insertions(+), 3504 deletions(-)
Title: C++ Interface to PostgreSQL
Description: Fully DBI-compliant C++-backed interface to PostgreSQL
<https://www.postgresql.org/>, an open-source relational database.
Author: Hadley Wickham [aut],
Jeroen Ooms [aut],
Kirill Mueller [aut, cre] ,
RStudio [cph],
R Consortium [fnd],
Tomoaki Nishiyama [ctb]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between RPostgres versions 1.4.6 dated 2023-10-22 and 1.4.7 dated 2024-05-27
RPostgres-1.4.6/RPostgres/R/names.R |only RPostgres-1.4.7/RPostgres/DESCRIPTION | 20 - RPostgres-1.4.7/RPostgres/MD5 | 43 +-- RPostgres-1.4.7/RPostgres/NEWS.md | 30 ++ RPostgres-1.4.7/RPostgres/R/dbColumnInfo_PqResult.R | 1 RPostgres-1.4.7/RPostgres/R/dbExistsTable_PqConnection_Id.R | 2 RPostgres-1.4.7/RPostgres/R/dbExistsTable_PqConnection_character.R | 9 RPostgres-1.4.7/RPostgres/R/dbFetch_PqResult.R | 2 RPostgres-1.4.7/RPostgres/R/dbListFields_PqConnection_Id.R | 2 RPostgres-1.4.7/RPostgres/R/dbListFields_PqConnection_character.R | 2 RPostgres-1.4.7/RPostgres/R/dbListObjects_PqConnection_ANY.R | 25 +- RPostgres-1.4.7/RPostgres/R/dbListTables_PqConnection.R | 9 RPostgres-1.4.7/RPostgres/R/dbQuoteIdentifier_PqConnection_Id.R | 15 - RPostgres-1.4.7/RPostgres/R/dbWriteTable_PqConnection_character_data.frame.R | 19 - RPostgres-1.4.7/RPostgres/R/tables.R | 114 +++++++--- RPostgres-1.4.7/RPostgres/README.md | 2 RPostgres-1.4.7/RPostgres/build/vignette.rds |binary RPostgres-1.4.7/RPostgres/configure | 4 RPostgres-1.4.7/RPostgres/inst/doc/work-queue.html | 2 RPostgres-1.4.7/RPostgres/tests/testthat/helper-DBItest.R | 4 RPostgres-1.4.7/RPostgres/tests/testthat/test-DBItest.R | 6 RPostgres-1.4.7/RPostgres/tests/testthat/test-dbQuoteIdentifier.R | 67 +++++ RPostgres-1.4.7/RPostgres/tests/testthat/test-dbWriteTable.R | 19 + 23 files changed, 276 insertions(+), 121 deletions(-)
Title: Database Interface and MariaDB Driver
Description: Implements a DBI-compliant interface to MariaDB
(<https://mariadb.org/>) and MySQL (<https://www.mysql.com/>)
databases.
Author: Kirill Mueller [aut, cre] ,
Jeroen Ooms [aut] ,
David James [aut],
Saikat DebRoy [aut],
Hadley Wickham [aut],
Jeffrey Horner [aut],
R Consortium [fnd],
RStudio [cph]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between RMariaDB versions 1.3.1 dated 2023-10-26 and 1.3.2 dated 2024-05-27
RMariaDB-1.3.1/RMariaDB/R/names.R |only RMariaDB-1.3.2/RMariaDB/DESCRIPTION | 11 - RMariaDB-1.3.2/RMariaDB/MD5 | 40 ++--- RMariaDB-1.3.2/RMariaDB/NAMESPACE | 4 RMariaDB-1.3.2/RMariaDB/NEWS.md | 32 ++++ RMariaDB-1.3.2/RMariaDB/R/connect.R | 15 +- RMariaDB-1.3.2/RMariaDB/R/cpp11.R | 4 RMariaDB-1.3.2/RMariaDB/R/dbColumnInfo_MariaDBResult.R | 1 RMariaDB-1.3.2/RMariaDB/R/dbConnect_MariaDBDriver.R | 26 +++ RMariaDB-1.3.2/RMariaDB/R/dbFetch_MariaDBResult.R | 2 RMariaDB-1.3.2/RMariaDB/R/dbQuoteIdentifier_MariaDBConnection_Id.R | 15 -- RMariaDB-1.3.2/RMariaDB/R/show_MariaDBConnection.R | 21 +-- RMariaDB-1.3.2/RMariaDB/R/table.R | 2 RMariaDB-1.3.2/RMariaDB/README.md | 2 RMariaDB-1.3.2/RMariaDB/man/Client-flags.Rd | 6 RMariaDB-1.3.2/RMariaDB/man/dbConnect-MariaDBDriver-method.Rd | 18 ++ RMariaDB-1.3.2/RMariaDB/src/DbConnection.cpp | 70 +++++++--- RMariaDB-1.3.2/RMariaDB/src/DbConnection.h | 2 RMariaDB-1.3.2/RMariaDB/src/connection.cpp | 4 RMariaDB-1.3.2/RMariaDB/src/cpp11.cpp | 6 RMariaDB-1.3.2/RMariaDB/tests/testthat/test-dbQuoteIdentifier.R |only RMariaDB-1.3.2/RMariaDB/tests/testthat/test-dbWriteTable.R | 4 22 files changed, 194 insertions(+), 91 deletions(-)
Title: Seamless Integration of Sharing and Connect Buttons in Markdown
and Apps
Description: Implementation of 'JQuery' <https://jquery.com> and 'CSS' styles to allow easy incorporation of various social media elements on a page. The elements include addition of share buttons or connect with us buttons or hyperlink buttons to 'Shiny' applications or dashboards and 'Rmarkdown' documents.Sharing capability on social media platforms including 'Facebook' <https://www.facebook.com>, 'Linkedin' <https://www.linkedin.com>, 'X/Twitter' <https://x.com>, 'Tumblr' <https://www.tumblr.com>, 'Pinterest' <https://www.pinterest.com>, 'Whatsapp' <https://www.whatsapp.com>, 'Reddit' <https://www.reddit.com>, 'Baidu' <https://www.baidu.com>, 'Blogger' <https://www.blogger.com>, 'Weibo' <https://www.weibo.com>, 'Instagram' <https://www.instagram.com>, 'Telegram' <https://www.telegram.me>, 'Youtube' <https://www.youtube.com>.
Author: Obinna Obianom [aut, cre]
Maintainer: Obinna Obianom <idonshayo@gmail.com>
Diff between r2social versions 1.1 dated 2024-01-10 and 1.2 dated 2024-05-27
r2social-1.1/r2social/inst/doc/introduction_r2social.R |only r2social-1.1/r2social/inst/examples/rsconnect |only r2social-1.1/r2social/inst/examples/sample1.html |only r2social-1.2/r2social/DESCRIPTION | 13 r2social-1.2/r2social/MD5 | 41 +- r2social-1.2/r2social/NAMESPACE | 2 r2social-1.2/r2social/NEWS.md | 9 r2social-1.2/r2social/R/connectButton.R | 6 r2social-1.2/r2social/R/githubpprofile1.R |only r2social-1.2/r2social/R/githubpprofile2.R |only r2social-1.2/r2social/R/shareButton.R | 6 r2social-1.2/r2social/R/socialtools.R | 9 r2social-1.2/r2social/README.md | 98 ++++- r2social-1.2/r2social/build/vignette.rds |binary r2social-1.2/r2social/inst/doc/introduction_r2social.Rmd | 138 +++++-- r2social-1.2/r2social/inst/doc/introduction_r2social.html | 271 ++++++-------- r2social-1.2/r2social/inst/examples/sample1.Rmd | 69 +++ r2social-1.2/r2social/inst/examples/ui.R | 25 + r2social-1.2/r2social/man/connectButton.Rd | 6 r2social-1.2/r2social/man/profileDisplay1.Rd |only r2social-1.2/r2social/man/profileDisplay2.Rd |only r2social-1.2/r2social/man/r2social-package.Rd | 4 r2social-1.2/r2social/man/shareButton.Rd | 6 r2social-1.2/r2social/man/socialButtons.Rd | 6 r2social-1.2/r2social/vignettes/introduction_r2social.Rmd | 138 +++++-- 25 files changed, 581 insertions(+), 266 deletions(-)
Title: Tools for Data Analysis in Experimental Agriculture
Description: Methods to analyse experimental agriculture data,
from data synthesis to model selection and visualisation.
The package is named after W.S. Gosset aka ‘Student’, a pioneer
of modern statistics in small sample experimental design and analysis.
Author: Kaue de Sousa [aut, cre] ,
Jacob van Etten [aut] ,
David Brown [aut] ,
Jonathan Steinke [aut] ,
Joost van Heerwaarden [aut]
Maintainer: Kaue de Sousa <desousa.kaue@gmail.com>
Diff between gosset versions 1.0 dated 2023-04-21 and 1.3 dated 2024-05-27
gosset-1.0/gosset/inst/doc/Overview.Rmd |only gosset-1.0/gosset/inst/doc/Overview.html |only gosset-1.0/gosset/man/figures |only gosset-1.0/gosset/vignettes/Overview.Rmd |only gosset-1.3/gosset/DESCRIPTION | 17 +-- gosset-1.3/gosset/MD5 | 52 +++++----- gosset-1.3/gosset/NAMESPACE | 7 + gosset-1.3/gosset/NEWS.md | 22 ++++ gosset-1.3/gosset/R/breadwheat.R | 10 + gosset-1.3/gosset/R/btpermute.R | 2 gosset-1.3/gosset/R/deviance.R | 34 ++++++ gosset-1.3/gosset/R/internal_functions.R | 16 +++ gosset-1.3/gosset/R/likelihood_ratio.R |only gosset-1.3/gosset/R/pairwise_worth.R |only gosset-1.3/gosset/R/print.R | 4 gosset-1.3/gosset/R/regret.R | 34 +++++- gosset-1.3/gosset/R/resample.R |only gosset-1.3/gosset/R/worth_map.R | 2 gosset-1.3/gosset/build/partial.rdb |binary gosset-1.3/gosset/build/vignette.rds |binary gosset-1.3/gosset/inst/CITATION | 10 - gosset-1.3/gosset/inst/doc/vignette-1-trait-prioritization-and-crop-performance.Rmd |only gosset-1.3/gosset/inst/doc/vignette-1-trait-prioritization-and-crop-performance.html |only gosset-1.3/gosset/man/breadwheat.Rd | 9 + gosset-1.3/gosset/man/btpermute.Rd | 1 gosset-1.3/gosset/man/gosset.Rd | 6 - gosset-1.3/gosset/man/likelihood_ratio.Rd |only gosset-1.3/gosset/man/pairwise_probs.Rd |only gosset-1.3/gosset/man/regret.Rd | 10 + gosset-1.3/gosset/man/resample.Rd |only gosset-1.3/gosset/vignettes/vignette-1-trait-prioritization-and-crop-performance.Rmd |only gosset-1.3/gosset/vignettes/vignette.bib | 28 +++++ 32 files changed, 210 insertions(+), 54 deletions(-)
Title: Spatial and Space-Time Point Pattern Analysis
Description: The Splancs package was written as an enhancement to S-Plus for display and analysis of spatial point pattern data; it has been ported to R and is in "maintenance mode".
Author: Roger Bivand [cre],
Barry Rowlingson [aut],
Peter Diggle [aut],
Giovanni Petris [ctb],
Stephen Eglen [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between splancs versions 2.01-44 dated 2023-08-21 and 2.01-45 dated 2024-05-27
DESCRIPTION | 8 - MD5 | 8 - src/stkhat.f | 128 ++++++++-------- src/tribble.f | 435 +++++++++++++++++++++++++++++--------------------------- src/twodimmse.f | 63 ++++---- 5 files changed, 335 insertions(+), 307 deletions(-)
Title: Random Number Generation Functions for 'rxode2'
Description: Provides the random number generation (in parallel) needed for
'rxode2' (Wang, Hallow and James (2016) <doi:10.1002/psp4.12052>) and 'nlmixr2'
(Fidler et al (2019) <doi:10.1002/psp4.12445>).
This split will reduce computational burden of recompiling 'rxode2'.
Author: Matthew L. Fidler [aut, cre] ,
Wenping Wang [ctb],
Bill Denney [ctb]
Maintainer: Matthew L. Fidler <matthew.fidler@gmail.com>
Diff between rxode2random versions 2.0.13 dated 2024-01-30 and 2.1.1 dated 2024-05-27
DESCRIPTION | 10 ++-- MD5 | 16 +++---- NEWS.md | 10 ++++ R/rxode2random_md5.R | 2 R/rxrandom.R | 5 -- build/partial.rdb |binary man/cvPost.Rd | 4 - src/checkmate_stub.c | 1 src/rxthreefry.cpp | 105 ++++++++++++++++++++++++++++----------------------- 9 files changed, 88 insertions(+), 65 deletions(-)
Title: Download and Tidy Time Series Data from the Australian Bureau of
Statistics
Description: Downloads, imports, and tidies time series data from the
Australian Bureau of Statistics <https://www.abs.gov.au/>.
Author: Matt Cowgill [aut, cre] ,
Zoe Meers [aut],
Jaron Lee [aut],
David Diviny [aut],
Hugh Parsonage [ctb],
Kinto Behr [ctb]
Maintainer: Matt Cowgill <mattcowgill@gmail.com>
Diff between readabs versions 0.4.15 dated 2024-05-26 and 0.4.16 dated 2024-05-27
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ R/check_abs_connection.R | 2 +- 4 files changed, 11 insertions(+), 7 deletions(-)
Title: Genomic Prediction of Hybrid Performance with Graphical User
Interface
Description: Performs genomic prediction of hybrid performance using eight GS methods including GBLUP, BayesB, RKHS, PLS, LASSO, Elastic net, XGBoost and LightGBM.
GBLUP: genomic best liner unbiased prediction, RKHS: reproducing kernel Hilbert space, PLS: partial least squares regression, LASSO: least absolute shrinkage and selection operator, XGBoost: extreme gradient boosting, LightGBM: light gradient boosting machine.
It also provides fast cross-validation and mating design scheme for training population (Xu S et al (2016) <doi:10.1111/tpj.13242>; Xu S (2017) <doi:10.1534/g3.116.038059>).
Author: Yang Xu [aut],
Guangning Yu [aut],
Yuxiang Zhang [aut, cre],
Yanru Cui [ctb],
Shizhong Xu [ctb],
Chenwu Xu [ctb]
Maintainer: Yuxiang Zhang <yuxiangzhang_99@foxmail.com>
Diff between predhy.GUI versions 1.0 dated 2023-02-21 and 2.0 dated 2024-05-27
predhy.GUI-1.0/predhy.GUI/inst/doc/Instruction.pdf |only predhy.GUI-2.0/predhy.GUI/DESCRIPTION | 14 - predhy.GUI-2.0/predhy.GUI/MD5 | 12 - predhy.GUI-2.0/predhy.GUI/NAMESPACE | 2 predhy.GUI-2.0/predhy.GUI/R/import_packages.R | 4 predhy.GUI-2.0/predhy.GUI/R/predhy.GUI.R | 179 ++++++++++++------ predhy.GUI-2.0/predhy.GUI/inst/doc/Introduction.pdf |only predhy.GUI-2.0/predhy.GUI/inst/extdata/fix.csv |only predhy.GUI-2.0/predhy.GUI/inst/extdata/parent_phe.csv |only 9 files changed, 143 insertions(+), 68 deletions(-)
Title: Harmonised Index of Consumer Prices
Description: The Harmonised Index of Consumer Prices (HICP) is the key economic figure to measure inflation in the euro area.
The methodology underlying the HICP is documented in the HICP Methodological Manual (<https://ec.europa.eu/eurostat/web/products-manuals-and-guidelines/w/ks-gq-24-003>).
Based on the manual, this package provides functions to access and work with HICP data from Eurostat's public database (<https://ec.europa.eu/eurostat/data/database>).
Author: Sebastian Weinand [aut, cre]
Maintainer: Sebastian Weinand <sebastian.weinand@ec.europa.eu>
Diff between hicp versions 0.4.2 dated 2024-02-28 and 0.5.0 dated 2024-05-27
DESCRIPTION | 6 - MD5 | 22 ++--- NAMESPACE | 7 + NEWS.md | 6 + R/index.aggregation.r | 139 +++++++++++++++++++++----------- build/vignette.rds |binary inst/doc/hicp_intro.R | 6 - inst/doc/hicp_intro.Rmd | 6 - inst/doc/hicp_intro.html | 18 ++-- man/index.aggregation.Rd | 58 +++++++------ tests/testthat/test_index.aggregation.r | 14 +-- vignettes/hicp_intro.Rmd | 6 - 12 files changed, 176 insertions(+), 112 deletions(-)