Title: Wrapper Functions Around 'Sleeper' (Fantasy Sports) API
Description: For those wishing to interact with the 'Sleeper' (Fantasy Sports) API (<https://docs.sleeper.com/>) without looking too much into its documentation (found at <https://docs.sleeper.com/>), this package offers wrapper functions around the available API calls to make it easier.
Author: Nick Bultman [aut, cre, cph]
Maintainer: Nick Bultman <njbultman74@gmail.com>
Diff between sleeperapi versions 1.1.0 dated 2024-05-14 and 1.1.1 dated 2024-06-01
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/get_all_nfl_players.R | 28 +++++++++++++++++++++------- 3 files changed, 26 insertions(+), 12 deletions(-)
Title: Dendrochronology Program Library in R
Description: Perform tree-ring analyses such as detrending, chronology
building, and cross dating. Read and write standard file formats
used in dendrochronology.
Author: Andy Bunn [aut, cph, cre, trl],
Mikko Korpela [aut, cph, trl],
Franco Biondi [aut, cph],
Filipe Campelo [aut, cph],
Pierre Merian [aut, cph],
Fares Qeadan [aut, cph],
Christian Zang [aut, cph],
Allan Buras [ctb],
Alice Cecile [ctb],
Manfred Mudelsee [...truncated...]
Maintainer: Andy Bunn <bunna@wwu.edu>
Diff between dplR versions 1.7.6 dated 2023-11-30 and 1.7.7 dated 2024-06-01
ChangeLog | 49 +++++++++ DESCRIPTION | 10 +- MD5 | 32 +++--- NAMESPACE | 3 R/bakker.R |only R/caps.R | 11 +- R/read.tucson.R | 32 +++--- R/rwl.report.R | 186 +++++++++++++++++++++++++++---------- R/ssf.R | 263 +++++++++++++++++++++++++++++++++++++---------------- TODO | 14 ++ data/zof.anc.rda |only data/zof.rwl.rda |only man/bai.in.Rd | 2 man/bakker.Rd |only man/caps.Rd | 22 +--- man/read.tucson.Rd | 4 man/rwl.report.Rd | 35 +++++-- man/ssf.Rd | 69 ++++++++----- man/zof.anc.Rd |only man/zof.rwl.Rd |only 20 files changed, 508 insertions(+), 224 deletions(-)
Title: Multidimensional Adaptive Testing
Description: Simulates Multidimensional Adaptive Testing using the multidimensional three-parameter logistic model as described in Segall (1996) <doi:10.1007/BF02294343>, van der Linden (1999) <doi:10.3102/10769986024004398>, Reckase (2009) <doi:10.1007/978-0-387-89976-3>, and Mulder & van der Linden (2009) <doi:10.1007/s11336-008-9097-5>.
Author: Seung W. Choi and David R. King
Maintainer: Seung W. Choi <schoi@austin.utexas.edu>
Diff between MAT versions 2.3.1 dated 2022-05-01 and 2.3.2 dated 2024-06-01
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- man/MAT-package.Rd | 10 ---------- 3 files changed, 6 insertions(+), 16 deletions(-)
Title: Linking Geographic Information Systems, Remote Sensing and Other
Command Line Tools
Description: Functions and tools for using open GIS and remote sensing command-line interfaces in a reproducible environment.
Author: Chris Reudenbach [cre, aut],
Tim Appelhans [ctb]
Maintainer: Chris Reudenbach <reudenbach@uni-marburg.de>
Diff between link2GI versions 0.5-3 dated 2023-10-30 and 0.6-1 dated 2024-06-01
link2GI-0.5-3/link2GI/inst/doc/link2GI1.R |only link2GI-0.5-3/link2GI/inst/doc/link2GI6.R |only link2GI-0.5-3/link2GI/man/linkGRASS7.Rd |only link2GI-0.6-1/link2GI/DESCRIPTION | 19 link2GI-0.6-1/link2GI/MD5 | 173 +++--- link2GI-0.6-1/link2GI/NAMESPACE | 12 link2GI-0.6-1/link2GI/NEWS | 17 link2GI-0.6-1/link2GI/NEWS.md | 128 +++- link2GI-0.6-1/link2GI/R/gdalControls.R | 451 ++++++++------- link2GI-0.6-1/link2GI/R/grassControl.R | 678 ++++++++++-------------- link2GI-0.6-1/link2GI/R/initProj.R | 559 ++++++++++++++++--- link2GI-0.6-1/link2GI/R/link2giKarim.R | 290 ++++------ link2GI-0.6-1/link2GI/R/linkGDAL.R | 205 +++---- link2GI-0.6-1/link2GI/R/linkGRASS.R | 581 +++++++------------- link2GI-0.6-1/link2GI/R/linkOTB.R | 224 +++---- link2GI-0.6-1/link2GI/R/linkSAGA.R | 63 +- link2GI-0.6-1/link2GI/R/otbControls.R | 309 +++++----- link2GI-0.6-1/link2GI/R/parseOTB.R | 410 ++++++-------- link2GI-0.6-1/link2GI/R/sagaControl.R | 317 ++++++----- link2GI-0.6-1/link2GI/README.md | 80 -- link2GI-0.6-1/link2GI/build/vignette.rds |binary link2GI-0.6-1/link2GI/inst/doc/link2GI1.Rmd | 50 - link2GI-0.6-1/link2GI/inst/doc/link2GI1.html | 117 ---- link2GI-0.6-1/link2GI/inst/doc/link2GI2.R | 117 +--- link2GI-0.6-1/link2GI/inst/doc/link2GI2.Rmd | 193 +++--- link2GI-0.6-1/link2GI/inst/doc/link2GI2.html | 179 ++---- link2GI-0.6-1/link2GI/inst/doc/link2GI3.R | 8 link2GI-0.6-1/link2GI/inst/doc/link2GI3.Rmd | 59 +- link2GI-0.6-1/link2GI/inst/doc/link2GI3.html | 55 - link2GI-0.6-1/link2GI/inst/doc/link2GI4.R | 8 link2GI-0.6-1/link2GI/inst/doc/link2GI4.Rmd | 17 link2GI-0.6-1/link2GI/inst/doc/link2GI4.html | 22 link2GI-0.6-1/link2GI/inst/doc/link2GI5.Rmd | 81 ++ link2GI-0.6-1/link2GI/inst/doc/link2GI5.html | 142 ++++- link2GI-0.6-1/link2GI/inst/doc/link2GI6.Rmd | 211 ------- link2GI-0.6-1/link2GI/inst/doc/link2GI6.html | 221 ------- link2GI-0.6-1/link2GI/inst/doc/link2GI7.R |only link2GI-0.6-1/link2GI/inst/doc/link2GI7.Rmd |only link2GI-0.6-1/link2GI/inst/doc/link2GI7.html |only link2GI-0.6-1/link2GI/inst/rstudio |only link2GI-0.6-1/link2GI/inst/templates |only link2GI-0.6-1/link2GI/man/add2Path.Rd | 2 link2GI-0.6-1/link2GI/man/addGitFolders.Rd |only link2GI-0.6-1/link2GI/man/createFolders.Rd |only link2GI-0.6-1/link2GI/man/createMeta.Rd |only link2GI-0.6-1/link2GI/man/createScript.Rd |only link2GI-0.6-1/link2GI/man/findGDAL.Rd | 2 link2GI-0.6-1/link2GI/man/findGRASS.Rd | 22 link2GI-0.6-1/link2GI/man/findOTB.Rd | 3 link2GI-0.6-1/link2GI/man/findSAGA.Rd | 10 link2GI-0.6-1/link2GI/man/gvec2sf.Rd | 16 link2GI-0.6-1/link2GI/man/initProj.Rd | 98 ++- link2GI-0.6-1/link2GI/man/linkAll.Rd | 5 link2GI-0.6-1/link2GI/man/linkGDAL.Rd | 12 link2GI-0.6-1/link2GI/man/linkGRASS.Rd | 131 ++-- link2GI-0.6-1/link2GI/man/linkOTB.Rd | 12 link2GI-0.6-1/link2GI/man/linkSAGA.Rd | 16 link2GI-0.6-1/link2GI/man/loadEnvi.Rd |only link2GI-0.6-1/link2GI/man/loadLibraries.Rd |only link2GI-0.6-1/link2GI/man/makGlobalVar.Rd | 2 link2GI-0.6-1/link2GI/man/makeGlobalVariable.Rd |only link2GI-0.6-1/link2GI/man/manuallyBuild.Rd | 2 link2GI-0.6-1/link2GI/man/paramGRASSw.Rd | 9 link2GI-0.6-1/link2GI/man/paramGRASSx.Rd | 19 link2GI-0.6-1/link2GI/man/parseOTBAlgorithms.Rd | 7 link2GI-0.6-1/link2GI/man/parseOTBFunction.Rd | 9 link2GI-0.6-1/link2GI/man/runOTB.Rd | 25 link2GI-0.6-1/link2GI/man/saveEnvi.Rd |only link2GI-0.6-1/link2GI/man/searchGDALW.Rd | 4 link2GI-0.6-1/link2GI/man/searchGDALX.Rd | 8 link2GI-0.6-1/link2GI/man/searchGRASSW.Rd | 6 link2GI-0.6-1/link2GI/man/searchGRASSX.Rd | 8 link2GI-0.6-1/link2GI/man/searchOTBW.Rd | 2 link2GI-0.6-1/link2GI/man/searchOTBX.Rd | 2 link2GI-0.6-1/link2GI/man/searchSAGAW.Rd | 10 link2GI-0.6-1/link2GI/man/searchSAGAX.Rd | 8 link2GI-0.6-1/link2GI/man/setenvGDAL.Rd | 7 link2GI-0.6-1/link2GI/man/setenvGRASSw.Rd | 17 link2GI-0.6-1/link2GI/man/setenvOTB.Rd | 7 link2GI-0.6-1/link2GI/man/setupProj.Rd |only link2GI-0.6-1/link2GI/man/setup_default.Rd |only link2GI-0.6-1/link2GI/man/sf2gvec.Rd | 16 link2GI-0.6-1/link2GI/man/sourceFunctions.Rd |only link2GI-0.6-1/link2GI/vignettes/link2GI1.Rmd | 50 - link2GI-0.6-1/link2GI/vignettes/link2GI2.Rmd | 193 +++--- link2GI-0.6-1/link2GI/vignettes/link2GI3.Rmd | 59 +- link2GI-0.6-1/link2GI/vignettes/link2GI4.Rmd | 17 link2GI-0.6-1/link2GI/vignettes/link2GI5.Rmd | 81 ++ link2GI-0.6-1/link2GI/vignettes/link2GI6.Rmd | 211 ------- link2GI-0.6-1/link2GI/vignettes/link2GI7.Rmd |only 90 files changed, 3380 insertions(+), 3724 deletions(-)
Title: Clinical Trial Registry History
Description: Retrieves historical versions of clinical trial registry
entries from <https://ClinicalTrials.gov>. Package functionality
and implementation for v 1.0.0 is documented in Carlisle (2022)
<DOI:10.1371/journal.pone.0270909>.
Author: Benjamin Gregory Carlisle [aut, cre]
Maintainer: Benjamin Gregory Carlisle <murph@bgcarlisle.com>
Diff between cthist versions 2.1.6 dated 2023-12-01 and 2.1.9 dated 2024-06-01
DESCRIPTION | 8 - MD5 | 29 +++-- NAMESPACE | 1 NEWS.md | 19 +++ R/clinicaltrials_gov_download.R | 3 R/clinicaltrials_gov_version.R | 17 ++- R/cthist-package.R | 9 + R/extract_publications.R |only README.md | 89 +++++++++++----- build/partial.rdb |binary inst |only man/clinicaltrials_gov_version.Rd | 1 man/cthist-package.Rd | 9 + man/extract_publications.Rd |only tests/testthat/test-clinicaltrials_gov_locations.R |only tests/testthat/test-clinicaltrials_gov_version.R | 2 tests/testthat/test-clinicaltrials_gov_version_latest.R | 2 tests/testthat/test-extract_publications.R |only 18 files changed, 137 insertions(+), 52 deletions(-)
More information about GeomArchetypal at CRAN
Permanent link
More information about CohortConstructor at CRAN
Permanent link
Title: Progression Analysis of Disease with Survival using Topological
Data Analysis
Description: Mapper-based survival analysis with transcriptomics data is designed to carry out.
Mapper-based survival analysis is a modification of Progression Analysis of Disease (PAD)
where survival data is taken into account in the filtering function. More
details in: J. Fores-Martos, B. Suay-Garcia, R. Bosch-Romeu, M.C. Sanfeliu-Alonso,
A. Falco, J. Climent, "Progression Analysis of Disease with Survival (PAD-S) by SurvMap
identifies different prognostic subgroups of breast cancer in a large combined set of transcriptomics
and methylation studies" <doi:10.1101/2022.09.08.507080>.
Author: Miriam Esteve [aut, cre] ,
Raquel Bosch [aut],
Jaume Fores [aut] ,
Joan Climent [aut],
Antonio Falco [aut]
Maintainer: Miriam Esteve <miriam.estevecampello@uchceu.es>
Diff between GSSTDA versions 0.1.3 dated 2023-06-07 and 1.0.0 dated 2024-06-01
GSSTDA-0.1.3/GSSTDA/R/DGSA.R |only GSSTDA-0.1.3/GSSTDA/man/DGSA.Rd |only GSSTDA-0.1.3/GSSTDA/man/GSSTDA.Rd |only GSSTDA-0.1.3/GSSTDA/man/figures/print_DGSA_information.png |only GSSTDA-0.1.3/GSSTDA/man/fun_to_int.Rd |only GSSTDA-0.1.3/GSSTDA/man/geneSelection.DGSA_object.Rd |only GSSTDA-0.1.3/GSSTDA/man/geneSelection.Rd |only GSSTDA-0.1.3/GSSTDA/man/geneSelection.default.Rd |only GSSTDA-0.1.3/GSSTDA/man/get_lambda.Rd |only GSSTDA-0.1.3/GSSTDA/man/get_mu_beta.Rd |only GSSTDA-0.1.3/GSSTDA/man/get_omega.Rd |only GSSTDA-0.1.3/GSSTDA/man/plot_DGSA.Rd |only GSSTDA-0.1.3/GSSTDA/man/results_DGSA.Rd |only GSSTDA-1.0.0/GSSTDA/DESCRIPTION | 11 GSSTDA-1.0.0/GSSTDA/MD5 | 93 GSSTDA-1.0.0/GSSTDA/NAMESPACE | 22 GSSTDA-1.0.0/GSSTDA/R/DSGA.R |only GSSTDA-1.0.0/GSSTDA/R/Filter_Funct.R | 2 GSSTDA-1.0.0/GSSTDA/R/GSSTDA.R | 103 GSSTDA-1.0.0/GSSTDA/R/GSSTDA_objects.R | 297 - GSSTDA-1.0.0/GSSTDA/R/Mapper.R | 37 GSSTDA-1.0.0/GSSTDA/R/One_D_Mapper.R | 68 GSSTDA-1.0.0/GSSTDA/R/check_arguments.R | 72 GSSTDA-1.0.0/GSSTDA/R/data.R | 12 GSSTDA-1.0.0/GSSTDA/R/gene_selection.R | 24 GSSTDA-1.0.0/GSSTDA/R/optimal_SVHT_coef.R |only GSSTDA-1.0.0/GSSTDA/README.md | 83 GSSTDA-1.0.0/GSSTDA/build/vignette.rds |binary GSSTDA-1.0.0/GSSTDA/inst/doc/GSSTDA-vignette.R | 35 GSSTDA-1.0.0/GSSTDA/inst/doc/GSSTDA-vignette.Rmd | 73 GSSTDA-1.0.0/GSSTDA/inst/doc/GSSTDA-vignette.html | 2671 ++++--------- GSSTDA-1.0.0/GSSTDA/man/MedianMarcenkoPastur.Rd |only GSSTDA-1.0.0/GSSTDA/man/check_arg_mapper.Rd | 23 GSSTDA-1.0.0/GSSTDA/man/check_vectors.Rd | 20 GSSTDA-1.0.0/GSSTDA/man/clust_all_levels.Rd | 22 GSSTDA-1.0.0/GSSTDA/man/clust_lev.Rd | 20 GSSTDA-1.0.0/GSSTDA/man/cox_all_genes.Rd | 15 GSSTDA-1.0.0/GSSTDA/man/denoise_rectangular_matrix.Rd | 14 GSSTDA-1.0.0/GSSTDA/man/dsga.Rd |only GSSTDA-1.0.0/GSSTDA/man/figures/plot_mapper_object.png |binary GSSTDA-1.0.0/GSSTDA/man/figures/print_DSGA_information.png |only GSSTDA-1.0.0/GSSTDA/man/flatten_normal_tiss.Rd | 2 GSSTDA-1.0.0/GSSTDA/man/full_data.Rd | 4 GSSTDA-1.0.0/GSSTDA/man/gene_selection.Rd | 90 GSSTDA-1.0.0/GSSTDA/man/gene_selection.default.Rd |only GSSTDA-1.0.0/GSSTDA/man/gene_selection.dsga_object.Rd |only GSSTDA-1.0.0/GSSTDA/man/gene_selection_.Rd |only GSSTDA-1.0.0/GSSTDA/man/generate_disease_component.Rd | 8 GSSTDA-1.0.0/GSSTDA/man/gsstda.Rd |only GSSTDA-1.0.0/GSSTDA/man/incMarPas.Rd |only GSSTDA-1.0.0/GSSTDA/man/lp_norm_k_powers_surv.Rd | 2 GSSTDA-1.0.0/GSSTDA/man/mapper.Rd | 38 GSSTDA-1.0.0/GSSTDA/man/optimal_SVHT_coef_gamma_known.Rd |only GSSTDA-1.0.0/GSSTDA/man/optimal_SVHT_coef_gamma_unknown.Rd |only GSSTDA-1.0.0/GSSTDA/man/plot_dsga.Rd |only GSSTDA-1.0.0/GSSTDA/man/plot_mapper.Rd | 8 GSSTDA-1.0.0/GSSTDA/man/results_dsga.Rd |only GSSTDA-1.0.0/GSSTDA/man/survival_event.Rd | 4 GSSTDA-1.0.0/GSSTDA/man/survival_time.Rd | 4 GSSTDA-1.0.0/GSSTDA/tests/testthat/test_flat_fun.R | 4 GSSTDA-1.0.0/GSSTDA/vignettes/GSSTDA-vignette.Rmd | 73 61 files changed, 1775 insertions(+), 2179 deletions(-)
Title: Disciplined Convex Optimization
Description: An object-oriented modeling language for disciplined
convex programming (DCP) as described in Fu, Narasimhan, and Boyd
(2020, <doi:10.18637/jss.v094.i14>). It allows the user to
formulate convex optimization problems in a natural way following
mathematical convention and DCP rules. The system analyzes the
problem, verifies its convexity, converts it into a canonical
form, and hands it off to an appropriate solver to obtain the
solution. Interfaces to solvers on CRAN and elsewhere are
provided, both commercial and open source.
Author: Anqi Fu [aut, cre],
Balasubramanian Narasimhan [aut],
David W Kang [aut],
Steven Diamond [aut],
John Miller [aut],
Stephen Boyd [ctb],
Paul Kunsberg Rosenfield [ctb]
Maintainer: Anqi Fu <anqif@alumni.stanford.edu>
Diff between CVXR versions 1.0-12 dated 2024-02-01 and 1.0-13 dated 2024-06-01
CVXR-1.0-12/CVXR/R/CVXR.R |only CVXR-1.0-13/CVXR/DESCRIPTION | 26 +++++----- CVXR-1.0-13/CVXR/MD5 | 38 +++++++-------- CVXR-1.0-13/CVXR/NEWS.md | 7 ++ CVXR-1.0-13/CVXR/R/CVXR-package.R |only CVXR-1.0-13/CVXR/R/RcppExports.R | 8 +++ CVXR-1.0-13/CVXR/R/coeff_extractor.R | 37 +++++++++++---- CVXR-1.0-13/CVXR/R/conic_solvers.R | 30 ++++++++++-- CVXR-1.0-13/CVXR/R/dcp2cone.R | 5 +- CVXR-1.0-13/CVXR/R/dgp2dcp.R | 2 CVXR-1.0-13/CVXR/R/generics.R | 6 ++ CVXR-1.0-13/CVXR/build/vignette.rds |binary CVXR-1.0-13/CVXR/inst/doc/cvxr_intro.Rmd | 17 +++--- CVXR-1.0-13/CVXR/inst/doc/cvxr_intro.html | 24 +++++---- CVXR-1.0-13/CVXR/inst/doc/version1.html | 4 - CVXR-1.0-13/CVXR/man/CVXR-package.Rd | 16 ++++-- CVXR-1.0-13/CVXR/src/RcppConv.cpp | 59 ++++++++++++++++++++++++ CVXR-1.0-13/CVXR/src/RcppExports.cpp | 24 +++++++++ CVXR-1.0-13/CVXR/tests/manual/test-vignette.R | 2 CVXR-1.0-13/CVXR/vignettes/bibtex/cvxr_refs.bib | 17 ++++-- CVXR-1.0-13/CVXR/vignettes/cvxr_intro.Rmd | 17 +++--- 21 files changed, 248 insertions(+), 91 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-02-15 0.1.1
2023-02-11 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-05-03 0.2.0
2024-04-16 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-05-13 0.6.0
2024-04-02 0.5.3
2024-03-05 0.5.2
2024-02-28 0.5.1
2024-02-10 0.5.0
2023-11-23 0.4.1
2023-10-20 0.4.0
2023-09-25 0.3.3
2023-08-31 0.3.2
2023-08-09 0.3.1
2023-06-19 0.2.0