Title: Estimating the Optimal Number of Migration Edges from 'Treemix'
Description: The popular population genetic software 'Treemix' by
'Pickrell and Pritchard' (2012) <DOI:10.1371/journal.pgen.1002967>
estimates the number of migration edges on a population tree.
However, it can be difficult to determine the number of migration
edges to include. Previously, it was customary to stop adding migration
edges when 99.8% of variation in the data was explained, but 'OptM'
automates this process using an ad hoc statistic based on the
second-order rate of change in the log likelihood. 'OptM' also
has added functionality for various threshold modeling
to compare with the ad hoc statistic.
Author: Robert Fitak [aut, cre]
Maintainer: Robert Fitak <rfitak9@gmail.com>
Diff between OptM versions 0.1.6 dated 2021-09-30 and 0.1.8 dated 2024-06-16
DESCRIPTION | 12 ++++++------ MD5 | 10 +++++----- R/optM.R | 4 ++-- R/plot_optM.R | 2 +- README.md | 9 ++++++++- inst/CITATION | 4 ++-- 6 files changed, 24 insertions(+), 17 deletions(-)
Title: Extensions of 'DTwrappers'
Description: Offers functionality which provides methods for data analyses and cleaning that can be flexibly applied across multiple variables and in groups. These include cleaning accidental text, contingent calculations, counting missing data, and building summarizations of the data.
Author: David Shilane [aut],
Mayur Bansal [ctb],
Srivastav Budugutta [ctb, cre]
Maintainer: Srivastav Budugutta <sb4788@columbia.edu>
Diff between DTwrappers2 versions 0.0.2 dated 2024-03-23 and 0.0.3 dated 2024-06-16
DTwrappers2-0.0.2/DTwrappers2/R/character.coercion.culprits.R |only DTwrappers2-0.0.2/DTwrappers2/R/dt.character.coercion.culprits.R |only DTwrappers2-0.0.2/DTwrappers2/R/dt.format.numerics.R |only DTwrappers2-0.0.2/DTwrappers2/R/dt.max.numerics.R |only DTwrappers2-0.0.2/DTwrappers2/R/dt.mean.measured.R |only DTwrappers2-0.0.2/DTwrappers2/R/dt.mean.missing.R |only DTwrappers2-0.0.2/DTwrappers2/R/dt.mean.numerics.R |only DTwrappers2-0.0.2/DTwrappers2/R/dt.median.numerics.R |only DTwrappers2-0.0.2/DTwrappers2/R/dt.min.numerics.R |only DTwrappers2-0.0.2/DTwrappers2/R/dt.quantile.numerics.R |only DTwrappers2-0.0.2/DTwrappers2/R/dt.remove.erroneous.characters.R |only DTwrappers2-0.0.2/DTwrappers2/R/dt.round.exactly.R |only DTwrappers2-0.0.2/DTwrappers2/R/dt.round.numerics.R |only DTwrappers2-0.0.2/DTwrappers2/R/dt.sd.numerics.R |only DTwrappers2-0.0.2/DTwrappers2/R/dt.summarize.R |only DTwrappers2-0.0.2/DTwrappers2/R/dt.total.measured.R |only DTwrappers2-0.0.2/DTwrappers2/R/dt.total.missing.R |only DTwrappers2-0.0.2/DTwrappers2/R/dt.trimws.character.R |only DTwrappers2-0.0.2/DTwrappers2/R/dt.var.numerics.R |only DTwrappers2-0.0.2/DTwrappers2/R/format.numerics.R |only DTwrappers2-0.0.2/DTwrappers2/R/lower.quartile.R |only DTwrappers2-0.0.2/DTwrappers2/R/max.numerics.R |only DTwrappers2-0.0.2/DTwrappers2/R/mean.measured.R |only DTwrappers2-0.0.2/DTwrappers2/R/mean.missing.R |only DTwrappers2-0.0.2/DTwrappers2/R/mean.numerics.R |only DTwrappers2-0.0.2/DTwrappers2/R/median.numerics.R |only DTwrappers2-0.0.2/DTwrappers2/R/min.numerics.R |only DTwrappers2-0.0.2/DTwrappers2/R/quantile.numerics.R |only DTwrappers2-0.0.2/DTwrappers2/R/remove.erroneous.characters.R |only DTwrappers2-0.0.2/DTwrappers2/R/round.exactly.R |only DTwrappers2-0.0.2/DTwrappers2/R/round.numerics.R |only DTwrappers2-0.0.2/DTwrappers2/R/sd.numerics.R |only DTwrappers2-0.0.2/DTwrappers2/R/total.measured.R |only DTwrappers2-0.0.2/DTwrappers2/R/total.missing.R |only DTwrappers2-0.0.2/DTwrappers2/R/trimws.character.R |only DTwrappers2-0.0.2/DTwrappers2/R/upper.quartile.R |only DTwrappers2-0.0.2/DTwrappers2/R/var.numerics.R |only DTwrappers2-0.0.3/DTwrappers2/DESCRIPTION | 6 DTwrappers2-0.0.3/DTwrappers2/MD5 | 107 - DTwrappers2-0.0.3/DTwrappers2/NAMESPACE | 27 DTwrappers2-0.0.3/DTwrappers2/R/DTWrapper2.R |only DTwrappers2-0.0.3/DTwrappers2/inst/doc/Introduction_to_DTwrappers2.R | 4 DTwrappers2-0.0.3/DTwrappers2/inst/doc/Introduction_to_DTwrappers2.Rmd | 650 +++++----- DTwrappers2-0.0.3/DTwrappers2/inst/doc/Introduction_to_DTwrappers2.html | 14 DTwrappers2-0.0.3/DTwrappers2/man/character.coercion.culprits.Rd |only DTwrappers2-0.0.3/DTwrappers2/man/dt.character.coercion.culprits.Rd | 2 DTwrappers2-0.0.3/DTwrappers2/man/dt.format.numerics.Rd | 2 DTwrappers2-0.0.3/DTwrappers2/man/dt.max.numerics.Rd | 2 DTwrappers2-0.0.3/DTwrappers2/man/dt.mean.measured.Rd | 2 DTwrappers2-0.0.3/DTwrappers2/man/dt.mean.missing.Rd | 2 DTwrappers2-0.0.3/DTwrappers2/man/dt.mean.numerics.Rd | 2 DTwrappers2-0.0.3/DTwrappers2/man/dt.median.numerics.Rd | 2 DTwrappers2-0.0.3/DTwrappers2/man/dt.min.numerics.Rd | 2 DTwrappers2-0.0.3/DTwrappers2/man/dt.quantile.numerics.Rd | 2 DTwrappers2-0.0.3/DTwrappers2/man/dt.remove.erroneous.characters.Rd | 2 DTwrappers2-0.0.3/DTwrappers2/man/dt.round.exactly.Rd | 2 DTwrappers2-0.0.3/DTwrappers2/man/dt.round.numerics.Rd | 2 DTwrappers2-0.0.3/DTwrappers2/man/dt.sd.numerics.Rd | 2 DTwrappers2-0.0.3/DTwrappers2/man/dt.summarize.Rd | 2 DTwrappers2-0.0.3/DTwrappers2/man/dt.total.measured.Rd | 2 DTwrappers2-0.0.3/DTwrappers2/man/dt.total.missing.Rd | 2 DTwrappers2-0.0.3/DTwrappers2/man/dt.trimws.character.Rd | 2 DTwrappers2-0.0.3/DTwrappers2/man/dt.var.numerics.Rd | 2 DTwrappers2-0.0.3/DTwrappers2/man/format.numerics.Rd |only DTwrappers2-0.0.3/DTwrappers2/man/lower.quartile.Rd | 2 DTwrappers2-0.0.3/DTwrappers2/man/max.numerics.Rd |only DTwrappers2-0.0.3/DTwrappers2/man/mean.measured.Rd |only DTwrappers2-0.0.3/DTwrappers2/man/mean.missing.Rd |only DTwrappers2-0.0.3/DTwrappers2/man/mean.numerics.Rd |only DTwrappers2-0.0.3/DTwrappers2/man/median.numerics.Rd |only DTwrappers2-0.0.3/DTwrappers2/man/min.numerics.Rd |only DTwrappers2-0.0.3/DTwrappers2/man/quantile.numerics.Rd |only DTwrappers2-0.0.3/DTwrappers2/man/remove.erroneous.characters.Rd |only DTwrappers2-0.0.3/DTwrappers2/man/round.numerics.Rd |only DTwrappers2-0.0.3/DTwrappers2/man/round_exactly.Rd |only DTwrappers2-0.0.3/DTwrappers2/man/round_exactly_one_value.Rd |only DTwrappers2-0.0.3/DTwrappers2/man/sd.numerics.Rd |only DTwrappers2-0.0.3/DTwrappers2/man/total.measured.Rd |only DTwrappers2-0.0.3/DTwrappers2/man/total.missing.Rd |only DTwrappers2-0.0.3/DTwrappers2/man/var.numerics.Rd |only DTwrappers2-0.0.3/DTwrappers2/tests/testthat.R | 24 DTwrappers2-0.0.3/DTwrappers2/vignettes/Introduction_to_DTwrappers2.Rmd | 650 +++++----- 82 files changed, 762 insertions(+), 758 deletions(-)
Title: Supporting Functions for Packages Maintained by 'Yihui Xie'
Description: Miscellaneous functions commonly used in other packages maintained by 'Yihui Xie'.
Author: Yihui Xie [aut, cre, cph] ,
Wush Wu [ctb],
Daijiang Li [ctb],
Xianying Tan [ctb],
Salim Brueggemann [ctb] ,
Christophe Dervieux [ctb],
Posit Software, PBC [cph, fnd]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between xfun versions 0.44 dated 2024-05-15 and 0.45 dated 2024-06-16
DESCRIPTION | 8 ++--- MD5 | 42 +++++++++++++-------------- NEWS.md | 10 +++++- R/app.R | 2 - R/command.R | 34 +++++++++++++--------- R/cran.R | 2 - R/github.R | 10 +++--- R/markdown.R | 2 - R/record.R | 7 ++-- R/revcheck.R | 30 +++++++++---------- R/string.R | 2 - R/utils.R | 5 +-- inst/doc/xfun.Rmd | 6 ++- inst/doc/xfun.html | 74 ++++++++++++++++++++++++------------------------ inst/scripts/call-fun.R | 14 +++++---- man/Rscript_call.Rd | 19 +++++++----- man/crandalf_check.Rd | 18 +++++------ man/github_releases.Rd | 4 +- man/rest_api.Rd | 4 +- man/retry.Rd | 2 - tests/test-ci.R | 2 - vignettes/xfun.Rmd | 6 ++- 22 files changed, 165 insertions(+), 138 deletions(-)
Title: Checks for Various Computing Environments
Description: A collection of lightweight functions that can be
used to determine the computing environment in which your code is
running. This includes operating systems, continuous integration (CI)
environments, containers, and more.
Author: Brian Connelly [aut, cre, cph]
,
Mark Padgham [ctb] ,
Lluis Revilla Sancho [ctb]
Maintainer: Brian Connelly <bdc@bconnelly.net>
Diff between ami versions 0.1.0 dated 2023-06-06 and 0.1.1 dated 2024-06-16
DESCRIPTION | 21 ++++++++++++++------- MD5 | 37 ++++++++++++++++++++++--------------- NAMESPACE | 3 +++ NEWS.md |only R/bioconductor.R | 5 ++++- R/conda.R |only R/cran.R | 27 +++++++++++++++++++++++++-- R/nix.R |only R/rstudio.R | 24 +++++++++++++++++++++++- R/utils.R | 6 ++++++ README.md | 8 ++++++++ inst/WORDLIST | 5 ++++- man/ami-package.Rd | 6 ++++++ man/bioconductor.Rd | 3 +++ man/conda.Rd |only man/cran.Rd | 20 ++++++++++++++++++-- man/nix.Rd |only man/rstudio.Rd | 12 +++++++++++- tests/testthat/test-bioconductor.R | 4 ++-- tests/testthat/test-conda.R |only tests/testthat/test-cran.R | 35 ++++++++++++++++++++++++++++++++--- tests/testthat/test-nix.R |only tests/testthat/test-rstudio.R | 22 ++++++++++++++++++++++ 23 files changed, 203 insertions(+), 35 deletions(-)
Title: Data Wrangling for Antimicrobial Resistance Studies
Description: Designed for analyzing the Medical Information Mart for Intensive Care(MIMIC) dataset,
a repository of freely accessible electronic health records. MIMER(MIMIC-enabled Research) package, offers
a suite of data wrangling functions tailored specifically for preparing the dataset for research purposes,
particularly in antimicrobial resistance(AMR) studies. It simplifies complex data manipulation tasks, allowing
researchers to focus on their primary inquiries without being bogged down by wrangling complexities.
Author: Anoop Velluva [aut, cre] ,
Alessandro Gerada [ctb] ,
Alexander Howard [ctb]
Maintainer: Anoop Velluva <anoop.velluva@liverpool.ac.uk>
Diff between MIMER versions 1.0.1 dated 2024-05-09 and 1.0.3 dated 2024-06-16
DESCRIPTION | 10 - MD5 | 11 + NEWS.md | 4 R/convert_antibiotics.R | 90 +++++++++++++ README.md | 200 +++++++++++++++++++----------- man/convert_all_directory_files_as_csv.Rd |only man/download_ndc_files_as_csv.Rd |only man/remove_files.Rd |only 8 files changed, 236 insertions(+), 79 deletions(-)
Title: HTML Exportation for R Objects
Description: Includes HTML function and methods to write in an HTML
file. Thus, making HTML reports is easy. Includes a function
that allows redirection on the fly, which appears to be very
useful for teaching purpose, as the student can keep a copy of
the produced output to keep all that he did during the course.
Package comes with a vignette describing how to write HTML
reports for statistical analysis. Finally, a driver for 'Sweave'
allows to parse HTML flat files containing R code and to
automatically write the corresponding outputs (tables and
graphs).
Author: Eric Lecoutre [aut],
Milan Bouchet-Valat [cre, ctb],
Thomas Friedrichsmeier [ctb]
Maintainer: Milan Bouchet-Valat <nalimilan@club.fr>
Diff between R2HTML versions 2.3.3 dated 2022-05-23 and 2.3.4 dated 2024-06-16
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NAMESPACE | 1 + NEWS | 3 +++ inst/CITATION | 24 +++++++++--------------- man/HTML.data.frame.Rd | 2 +- man/HTMLInsertGraph.Rd | 3 ++- 7 files changed, 26 insertions(+), 27 deletions(-)
Title: An R Package for Extended Behavior Genetics Analysis
Description: The BGmisc R package offers a comprehensive suite of
functions tailored for extended behavior genetics analysis, including
model identification, calculating relatedness, pedigree conversion,
pedigree simulation, and more.
Author: S. Mason Garrison [aut, cre] ,
Michael D. Hunter [aut] ,
Xuanyu Lyu [aut] ,
Rachel N. Good [ctb],
Jonathan D. Trattner [aut] ,
S. Alexandra Burt [aut]
Maintainer: S. Mason Garrison <garrissm@wfu.edu>
Diff between BGmisc versions 1.2.0 dated 2024-02-26 and 1.3.1 dated 2024-06-16
BGmisc-1.2.0/BGmisc/R/dataDoc.R |only BGmisc-1.2.0/BGmisc/R/evenInsert.R |only BGmisc-1.2.0/BGmisc/R/famSizeCal.R |only BGmisc-1.2.0/BGmisc/R/family.R |only BGmisc-1.2.0/BGmisc/R/formula.R |only BGmisc-1.2.0/BGmisc/R/helper.R |only BGmisc-1.2.0/BGmisc/tests/testthat/test-evenInsert.R |only BGmisc-1.2.0/BGmisc/tests/testthat/test-famSizeCal.R |only BGmisc-1.2.0/BGmisc/tests/testthat/test-helper.R |only BGmisc-1.2.0/BGmisc/tests/testthat/test-ident.R |only BGmisc-1.2.0/BGmisc/tests/testthat/test-network.R |only BGmisc-1.2.0/BGmisc/tests/testthat/test-pedigreesim.R |only BGmisc-1.2.0/BGmisc/tests/testthat/test-relatedness-functions.R |only BGmisc-1.3.1/BGmisc/DESCRIPTION | 27 - BGmisc-1.3.1/BGmisc/MD5 | 183 +++++---- BGmisc-1.3.1/BGmisc/NAMESPACE | 8 BGmisc-1.3.1/BGmisc/NEWS.md | 20 BGmisc-1.3.1/BGmisc/R/buildPedigree.R |only BGmisc-1.3.1/BGmisc/R/calculateFamilySize.R |only BGmisc-1.3.1/BGmisc/R/checkIDs.R | 82 +++- BGmisc-1.3.1/BGmisc/R/checkSex.R | 59 +- BGmisc-1.3.1/BGmisc/R/cleanPedigree.R | 16 BGmisc-1.3.1/BGmisc/R/computeRelatedness.R |only BGmisc-1.3.1/BGmisc/R/convertPedigree.R | 65 ++- BGmisc-1.3.1/BGmisc/R/documentData.R |only BGmisc-1.3.1/BGmisc/R/helpGeneric.R |only BGmisc-1.3.1/BGmisc/R/helpPedigree.R | 17 BGmisc-1.3.1/BGmisc/R/insertEven.R |only BGmisc-1.3.1/BGmisc/R/readPedigree.R |only BGmisc-1.3.1/BGmisc/R/simulatePedigree.R | 44 +- BGmisc-1.3.1/BGmisc/R/summarizePedigree.R |only BGmisc-1.3.1/BGmisc/R/tweakPedigree.R | 27 - BGmisc-1.3.1/BGmisc/README.md | 31 + BGmisc-1.3.1/BGmisc/build/vignette.rds |binary BGmisc-1.3.1/BGmisc/data/inbreeding.rda |binary BGmisc-1.3.1/BGmisc/data/potter.rda |binary BGmisc-1.3.1/BGmisc/inst/doc/analyticrelatedness.Rmd | 5 BGmisc-1.3.1/BGmisc/inst/doc/analyticrelatedness.html | 41 +- BGmisc-1.3.1/BGmisc/inst/doc/modelingrelatedness.html | 188 ++++----- BGmisc-1.3.1/BGmisc/inst/doc/network.R | 2 BGmisc-1.3.1/BGmisc/inst/doc/network.Rmd | 6 BGmisc-1.3.1/BGmisc/inst/doc/network.html | 95 ++-- BGmisc-1.3.1/BGmisc/inst/doc/pedigree.R | 4 BGmisc-1.3.1/BGmisc/inst/doc/pedigree.Rmd | 9 BGmisc-1.3.1/BGmisc/inst/doc/pedigree.html | 203 +++++----- BGmisc-1.3.1/BGmisc/inst/doc/validation.R |only BGmisc-1.3.1/BGmisc/inst/doc/validation.Rmd |only BGmisc-1.3.1/BGmisc/inst/doc/validation.html |only BGmisc-1.3.1/BGmisc/man/BGmisc-package.Rd | 8 BGmisc-1.3.1/BGmisc/man/Null.Rd | 2 BGmisc-1.3.1/BGmisc/man/SimPed.Rd | 2 BGmisc-1.3.1/BGmisc/man/allGens.Rd | 2 BGmisc-1.3.1/BGmisc/man/assignParentIDs.Rd |only BGmisc-1.3.1/BGmisc/man/buildBetweenGenerations.Rd | 2 BGmisc-1.3.1/BGmisc/man/calculateH.Rd |only BGmisc-1.3.1/BGmisc/man/calculateRelatedness.Rd | 8 BGmisc-1.3.1/BGmisc/man/calculateSummaryDT.Rd |only BGmisc-1.3.1/BGmisc/man/checkSex.Rd | 15 BGmisc-1.3.1/BGmisc/man/combine_columns.Rd |only BGmisc-1.3.1/BGmisc/man/countPatternRows.Rd |only BGmisc-1.3.1/BGmisc/man/createFamilyToParentsMapping.Rd |only BGmisc-1.3.1/BGmisc/man/createGenDataFrame.Rd | 2 BGmisc-1.3.1/BGmisc/man/determineSex.Rd | 2 BGmisc-1.3.1/BGmisc/man/efunc.Rd | 2 BGmisc-1.3.1/BGmisc/man/evenInsert.Rd | 2 BGmisc-1.3.1/BGmisc/man/extract_info.Rd |only BGmisc-1.3.1/BGmisc/man/famSizeCal.Rd | 2 BGmisc-1.3.1/BGmisc/man/findFounder.Rd |only BGmisc-1.3.1/BGmisc/man/hazard.Rd | 2 BGmisc-1.3.1/BGmisc/man/inbreeding.Rd | 2 BGmisc-1.3.1/BGmisc/man/inferRelatedness.Rd | 10 BGmisc-1.3.1/BGmisc/man/markPotentialChildren.Rd | 2 BGmisc-1.3.1/BGmisc/man/nullToNA.Rd | 2 BGmisc-1.3.1/BGmisc/man/ped2add.Rd | 20 BGmisc-1.3.1/BGmisc/man/ped2ce.Rd | 2 BGmisc-1.3.1/BGmisc/man/ped2cn.Rd | 19 BGmisc-1.3.1/BGmisc/man/ped2com.Rd | 14 BGmisc-1.3.1/BGmisc/man/ped2fam.Rd | 7 BGmisc-1.3.1/BGmisc/man/ped2graph.Rd | 2 BGmisc-1.3.1/BGmisc/man/ped2maternal.Rd | 2 BGmisc-1.3.1/BGmisc/man/ped2mit.Rd | 19 BGmisc-1.3.1/BGmisc/man/ped2paternal.Rd | 2 BGmisc-1.3.1/BGmisc/man/potter.Rd | 2 BGmisc-1.3.1/BGmisc/man/processParents.Rd |only BGmisc-1.3.1/BGmisc/man/readGedcom.Rd |only BGmisc-1.3.1/BGmisc/man/recodeSex.Rd | 24 - BGmisc-1.3.1/BGmisc/man/related_coef.Rd | 2 BGmisc-1.3.1/BGmisc/man/relatedness.Rd | 2 BGmisc-1.3.1/BGmisc/man/repairSex.Rd | 9 BGmisc-1.3.1/BGmisc/man/resample.Rd | 2 BGmisc-1.3.1/BGmisc/man/rmvn.Rd | 2 BGmisc-1.3.1/BGmisc/man/simulatePedigree.Rd | 2 BGmisc-1.3.1/BGmisc/man/sizeAllGens.Rd | 2 BGmisc-1.3.1/BGmisc/man/summarizeFamilies.Rd |only BGmisc-1.3.1/BGmisc/man/summarizeMatrilines.Rd |only BGmisc-1.3.1/BGmisc/man/summarizePatrilines.Rd |only BGmisc-1.3.1/BGmisc/man/summarizePedigrees.Rd |only BGmisc-1.3.1/BGmisc/man/try_na.Rd | 2 BGmisc-1.3.1/BGmisc/tests/testthat.R | 1 BGmisc-1.3.1/BGmisc/tests/testthat/Rplots.pdf |binary BGmisc-1.3.1/BGmisc/tests/testthat/test-calculateFamilySize.R |only BGmisc-1.3.1/BGmisc/tests/testthat/test-checkIDs.R | 49 ++ BGmisc-1.3.1/BGmisc/tests/testthat/test-checkSex.R | 13 BGmisc-1.3.1/BGmisc/tests/testthat/test-clean.X |only BGmisc-1.3.1/BGmisc/tests/testthat/test-computeRelatedness.R |only BGmisc-1.3.1/BGmisc/tests/testthat/test-helpGeneric.R |only BGmisc-1.3.1/BGmisc/tests/testthat/test-identifyModel.R |only BGmisc-1.3.1/BGmisc/tests/testthat/test-insertEven.R |only BGmisc-1.3.1/BGmisc/tests/testthat/test-networks.R |only BGmisc-1.3.1/BGmisc/tests/testthat/test-readPedigrees.R |only BGmisc-1.3.1/BGmisc/tests/testthat/test-simulatePedigree.R |only BGmisc-1.3.1/BGmisc/tests/testthat/test-summarizePedigrees.R |only BGmisc-1.3.1/BGmisc/tests/testthat/test-tweakPedigree.R | 45 +- BGmisc-1.3.1/BGmisc/vignettes/analyticrelatedness.Rmd | 5 BGmisc-1.3.1/BGmisc/vignettes/network.Rmd | 6 BGmisc-1.3.1/BGmisc/vignettes/pedigree.Rmd | 9 BGmisc-1.3.1/BGmisc/vignettes/validation.Rmd |only 117 files changed, 882 insertions(+), 581 deletions(-)
Title: Google Traffic
Description: Create geographically referenced traffic data from the Google Maps JavaScript API <https://developers.google.com/maps/documentation/javascript/examples/layer-traffic>.
Author: Robert Marty [aut, cre]
Maintainer: Robert Marty <rmarty@worldbank.org>
Diff between googletraffic versions 0.1.5 dated 2024-01-18 and 0.1.6 dated 2024-06-16
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/gt_load_png_as_traffic_raster.R | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Connectedness Approach
Description: The estimation of static and dynamic connectedness measures is created in a modular and user-friendly way. Besides, the time domain connectedness approaches, this package further allows to estimate the frequency connectedness approach, the joint spillover index and the extended joint connectedness approach. In addition, all connectedness frameworks can be based upon orthogonalized and generalized VAR, QVAR, LASSO VAR, Ridge VAR, Elastic Net VAR and TVP-VAR models. Furthermore, the package includes the conditional, decomposed and partial connectedness measures as well as the pairwise connectedness index, influence index and corrected total connectedness index. Finally, a battery of datasets are available allowing to replicate a variety of connectedness papers.
Author: David Gabauer
Maintainer: David Gabauer <david.gabauer@hotmail.com>
Diff between ConnectednessApproach versions 1.0.1 dated 2022-08-31 and 1.0.3 dated 2024-06-16
DESCRIPTION | 11 MD5 | 230 ++++++++-------- NAMESPACE | 215 ++++++++------- R/AggregatedConnectedness.R | 317 +++++++++++------------ R/BayesPrior.R | 128 ++++----- R/BivariateDCCGARCH.R | 102 ++++--- R/BivariatePortfolio.R | 232 +++++++---------- R/ConditionalConnectedness.R | 246 ++++++++---------- R/ConditionalCorrelations.R | 56 ++-- R/ConnectednessApproach-internal.R | 10 R/ConnectednessApproach.R | 476 ++++++++++++++++++----------------- R/ConnectednessTable.R | 108 +++---- R/DCCGARCHselection.R | 72 ++--- R/ElasticNetVAR.R | 158 +++++------ R/EquallyWeightedPortfolio.R | 165 +++++------- R/ExclusiveConnectedness.R | 302 +++++++++++----------- R/ExtendedJointConnectedness.R | 251 +++++++++--------- R/ExternalConnectedness.R | 384 ++++++++++++++-------------- R/FEVD.R | 190 ++++++------- R/FrequencyConnectedness.R | 260 +++++++++---------- R/GARCHselection.R | 132 ++++----- R/GARCHtests.R | 160 +++++------ R/HedgeRatio.R | 222 +++++++--------- R/IRF.R | 226 ++++++++-------- R/InclusiveConnectedness.R | 310 +++++++++++----------- R/InternalConnectedness.R | 378 +++++++++++++-------------- R/JointConnectedness.R | 206 +++++++-------- R/LADVAR.R |only R/MinimumConnectednessPortfolio.R | 213 ++++++--------- R/MinnesotaPrior.R | 64 ++-- R/MultivariateHedgingPortfolio.R |only R/PartialCorrelations.R | 62 ++-- R/PlotFROM.R | 170 ++++++------ R/PlotINF.R | 208 +++++++-------- R/PlotNET.R | 160 +++++------ R/PlotNPDC.R | 204 +++++++-------- R/PlotNPT.R | 140 +++++----- R/PlotNetwork.R | 162 ++++++----- R/PlotPCI.R | 210 +++++++-------- R/PlotTCI.R | 170 ++++++------ R/PlotTO.R | 158 +++++------ R/QVAR.R | 104 ++++--- R/R2Connectedness.R |only R/R2Correlations.R |only R/RiskParityPortfolio.R | 192 ++++++-------- R/SummaryStatistics.R | 261 ++++++++++--------- R/TVPVAR.R | 320 +++++++++++------------ R/TimeConnectedness.R | 176 ++++++------ R/UninformativePrior.R | 50 +-- R/VAR.R | 80 ++--- R/VFEVD.R | 174 ++++++------ R/VarianceTest.R | 174 ++++++------ R/WeightedBoxTest.R | 284 ++++++++++---------- R/Wold.R | 78 ++--- README.md | 69 ++--- data/cgp2024.rda |only man/AggregatedConnectedness.Rd | 85 +++--- man/BayesPrior.Rd | 64 ++-- man/BivariateDCCGARCH.Rd | 2 man/BivariatePortfolio.Rd | 7 man/ConditionalConnectedness.Rd | 86 +++--- man/ConditionalCorrelation.Rd | 52 +-- man/ConnectednessApproach.Rd | 191 +++++++------- man/ConnectednessTable.Rd | 54 +-- man/DCCGARCHselection.Rd | 98 +++---- man/ElasticNetVAR.Rd | 104 +++---- man/EquallyWeightedPortfolio.Rd | 7 man/ExclusiveConnectedness.Rd | 80 ++--- man/ExtendedJointConnectedness.Rd | 73 ++--- man/ExternalConnectedness.Rd | 88 +++--- man/FEVD.Rd | 92 +++--- man/FrequencyConnectedness.Rd | 108 +++---- man/GARCHselection.Rd | 98 +++---- man/GARCHtests.Rd | 62 ++-- man/HedgeRatio.Rd | 99 +++---- man/IRF.Rd | 78 ++--- man/InclusiveConnectedness.Rd | 78 ++--- man/InternalConnectedness.Rd | 94 +++--- man/JointConnectedness.Rd | 70 ++--- man/LADVAR.Rd |only man/MinimumConnectednessPortfolio.Rd | 5 man/MinnesotaPrior.Rd | 62 ++-- man/MultivariateHedgingPortfolio.Rd |only man/PartialCorrelations.Rd | 58 ++-- man/PlotFROM.Rd | 62 ++-- man/PlotINF.Rd | 74 ++--- man/PlotNET.Rd | 62 ++-- man/PlotNPDC.Rd | 74 ++--- man/PlotNPT.Rd | 50 +-- man/PlotNetwork.Rd | 74 ++--- man/PlotPCI.Rd | 74 ++--- man/PlotTCI.Rd | 62 ++-- man/PlotTO.Rd | 62 ++-- man/QVAR.Rd | 74 ++--- man/R2Connectedness.Rd |only man/R2Correlations.Rd |only man/RiskParityPortfolio.Rd | 7 man/SummaryStatistics.Rd | 78 ++--- man/TVPVAR.Rd | 80 ++--- man/UninformativePrior.Rd | 56 ++-- man/VAR.Rd | 62 ++-- man/VFEVD.Rd | 54 +-- man/Wold.Rd | 56 ++-- man/aaacgo2022.Rd | 20 - man/acg2020.Rd | 20 - man/bcg2022.Rd | 20 - man/bgu2021.Rd | 20 - man/cegg2022.Rd | 20 - man/cg2021.Rd | 20 - man/cgg2022.Rd | 20 - man/cgp2024.Rd |only man/cgs2021.Rd | 20 - man/cgs2022.Rd | 20 - man/dy2009.Rd | 22 - man/dy2012.Rd | 22 - man/g2020.Rd | 20 - man/gcat2022.Rd | 20 - man/gg2018.Rd | 20 - man/gghm2022.Rd | 20 - man/jcggh2022.Rd | 18 - man/lw2021.Rd | 20 - 121 files changed, 6420 insertions(+), 6308 deletions(-)
More information about ConnectednessApproach at CRAN
Permanent link
Title: Estimation and Additional Tools for Alternative Shared Frailty
Models
Description: Provide estimation and data generation tools for some new multivariate frailty models.
This version includes the gamma, inverse Gaussian, weighted Lindley, Birnbaum-Saunders,
truncated normal and mixture of inverse Gaussian as the distribution for the frailty terms.
For the basal model, it is considered a parametric approach based on the exponential,
Weibull and the piecewise exponential distributions as well as a semiparametric approach.
For details, see Gallardo and Bourguignon (2022) <doi:10.48550/arXiv.2206.12973>.
Author: Diego Gallardo [aut, cre],
Marcelo Bourguignon [aut]
Maintainer: Diego Gallardo <dgallardo@ubiobio.cl>
Diff between extrafrail versions 1.9 dated 2024-03-16 and 1.10 dated 2024-06-16
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/frailty.fit.R | 15 +++++++-------- R/print.extrafrail.R | 17 +++++++++++++++++ 5 files changed, 37 insertions(+), 17 deletions(-)
Title: Fit, Simulate and Diagnose Exponential-Family Models for
Rank-Order Relational Data
Description: A set of extensions for the 'ergm' package to fit weighted networks whose edge weights are ranks. See Krivitsky and Butts (2017) <doi:10.1177/0081175017692623> and Krivitsky, Hunter, Morris, and Klumb (2023) <doi:10.18637/jss.v105.i06>.
Author: Pavel N. Krivitsky [aut, cre] ,
Carter T. Butts [ctb],
Mark S. Handcock [ctb],
David R. Hunter [ctb]
Maintainer: Pavel N. Krivitsky <pavel@statnet.org>
Diff between ergm.rank versions 4.1.0 dated 2022-06-01 and 4.1.1 dated 2024-06-16
ergm.rank-4.1.0/ergm.rank/build/ergm.rank.pdf |only ergm.rank-4.1.0/ergm.rank/man/AlterSwap-ergmProposal.Rd |only ergm.rank-4.1.0/ergm.rank/man/CompleteOrder-ergmReference.Rd |only ergm.rank-4.1.0/ergm.rank/man/rank.deference-ergmTerm.Rd |only ergm.rank-4.1.0/ergm.rank/man/rank.edgecov-ergmTerm.Rd |only ergm.rank-4.1.0/ergm.rank/man/rank.inconsistency-ergmTerm.Rd |only ergm.rank-4.1.0/ergm.rank/man/rank.nodeicov-ergmTerm.Rd |only ergm.rank-4.1.0/ergm.rank/man/rank.nonconformity-ergmTerm.Rd |only ergm.rank-4.1.1/ergm.rank/DESCRIPTION | 23 ergm.rank-4.1.1/ergm.rank/LICENSE | 2 ergm.rank-4.1.1/ergm.rank/MD5 | 58 - ergm.rank-4.1.1/ergm.rank/NAMESPACE | 1 ergm.rank-4.1.1/ergm.rank/R/InitErgmReference.R | 2 ergm.rank-4.1.1/ergm.rank/R/InitWtErgmProposal.R | 2 ergm.rank-4.1.1/ergm.rank/R/InitWtErgmTerm_rank.R | 2 ergm.rank-4.1.1/ergm.rank/R/data.R | 2 ergm.rank-4.1.1/ergm.rank/R/ergm.rank-package.R | 48 - ergm.rank-4.1.1/ergm.rank/R/zzz.R | 3 ergm.rank-4.1.1/ergm.rank/build/partial.rdb |only ergm.rank-4.1.1/ergm.rank/build/stage23.rdb |only ergm.rank-4.1.1/ergm.rank/build/vignette.rds |binary ergm.rank-4.1.1/ergm.rank/inst/CITATION | 57 + ergm.rank-4.1.1/ergm.rank/inst/NEWS.Rd | 13 ergm.rank-4.1.1/ergm.rank/inst/REFERENCES.bib |only ergm.rank-4.1.1/ergm.rank/inst/doc/ordinal.html | 309 ++++++---- ergm.rank-4.1.1/ergm.rank/man/AlterSwap-ergmProposal-7e827ae4.Rd |only ergm.rank-4.1.1/ergm.rank/man/CompleteOrder-ergmReference-f40141c3.Rd |only ergm.rank-4.1.1/ergm.rank/man/ergm.rank-package.Rd | 59 - ergm.rank-4.1.1/ergm.rank/man/rankdeference-ergmTerm-73181c43.Rd |only ergm.rank-4.1.1/ergm.rank/man/rankedgecov-ergmTerm-5905bc22.Rd |only ergm.rank-4.1.1/ergm.rank/man/rankinconsistency-ergmTerm-b232ab56.Rd |only ergm.rank-4.1.1/ergm.rank/man/ranknodeicov-ergmTerm-856bed59.Rd |only ergm.rank-4.1.1/ergm.rank/man/ranknonconformity-ergmTerm-a4593778.Rd |only ergm.rank-4.1.1/ergm.rank/src/include_stubs.c | 2 ergm.rank-4.1.1/ergm.rank/src/init.c | 2 ergm.rank-4.1.1/ergm.rank/src/wtMHproposals.c | 2 ergm.rank-4.1.1/ergm.rank/src/wtchangestat_rank.h | 2 ergm.rank-4.1.1/ergm.rank/src/wtchangestats_rank.c | 2 ergm.rank-4.1.1/ergm.rank/tests/termTests_rank.R | 2 39 files changed, 355 insertions(+), 238 deletions(-)
Title: Fit, Simulate and Diagnose Exponential-Family Models for
Networks with Count Edges
Description: A set of extensions for the 'ergm' package to fit weighted networks whose edge weights are counts. See Krivitsky (2012) <doi:10.1214/12-EJS696> and Krivitsky, Hunter, Morris, and Klumb (2023) <doi:10.18637/jss.v105.i06>.
Author: Pavel N. Krivitsky [aut, cre] ,
Mark S. Handcock [ctb],
David R. Hunter [ctb],
Joyce Cheng [ctb]
Maintainer: Pavel N. Krivitsky <pavel@statnet.org>
Diff between ergm.count versions 4.1.1 dated 2022-05-25 and 4.1.2 dated 2024-06-16
ergm.count-4.1.1/ergm.count/build/ergm.count.pdf |only ergm.count-4.1.1/ergm.count/man/Binomial-ergmReference.Rd |only ergm.count-4.1.1/ergm.count/man/CMB-ergmTerm.Rd |only ergm.count-4.1.1/ergm.count/man/CMP-ergmTerm.Rd |only ergm.count-4.1.1/ergm.count/man/Disc-ergmProposal.Rd |only ergm.count-4.1.1/ergm.count/man/DiscTNT-ergmProposal.Rd |only ergm.count-4.1.1/ergm.count/man/Geometric-ergmReference.Rd |only ergm.count-4.1.1/ergm.count/man/Poisson-ergmReference.Rd |only ergm.count-4.1.1/ergm.count/man/ZIPoisson-ergmProposal.Rd |only ergm.count-4.1.1/ergm.count/vignettes/timings.csv |only ergm.count-4.1.2/ergm.count/DESCRIPTION | 21 ergm.count-4.1.2/ergm.count/LICENSE | 2 ergm.count-4.1.2/ergm.count/MD5 | 71 ergm.count-4.1.2/ergm.count/NAMESPACE | 1 ergm.count-4.1.2/ergm.count/R/InitErgmReference.R | 2 ergm.count-4.1.2/ergm.count/R/InitWtErgmProposal.R | 2 ergm.count-4.1.2/ergm.count/R/InitWtErgmTerm.R | 2 ergm.count-4.1.2/ergm.count/R/data.R | 2 ergm.count-4.1.2/ergm.count/R/ergm.count-package.R | 49 ergm.count-4.1.2/ergm.count/R/zzz.R | 3 ergm.count-4.1.2/ergm.count/build/partial.rdb |only ergm.count-4.1.2/ergm.count/build/stage23.rdb |only ergm.count-4.1.2/ergm.count/build/vignette.rds |binary ergm.count-4.1.2/ergm.count/inst/CITATION | 53 ergm.count-4.1.2/ergm.count/inst/NEWS.Rd | 16 ergm.count-4.1.2/ergm.count/inst/REFERENCES.bib |only ergm.count-4.1.2/ergm.count/inst/doc/valued.R | 8 ergm.count-4.1.2/ergm.count/inst/doc/valued.Rmd | 9 ergm.count-4.1.2/ergm.count/inst/doc/valued.html | 964 ++++++---- ergm.count-4.1.2/ergm.count/man/Binomial-ergmReference-cdff43a4.Rd |only ergm.count-4.1.2/ergm.count/man/CMB-ergmTerm-5a51afe9.Rd |only ergm.count-4.1.2/ergm.count/man/CMP-ergmTerm-4d501174.Rd |only ergm.count-4.1.2/ergm.count/man/Disc-ergmProposal-b6c6e5ca.Rd |only ergm.count-4.1.2/ergm.count/man/DiscTNT-ergmProposal-c3c2e8cb.Rd |only ergm.count-4.1.2/ergm.count/man/Geometric-ergmReference-1ee5c5ac.Rd |only ergm.count-4.1.2/ergm.count/man/Poisson-ergmReference-40df5ec8.Rd |only ergm.count-4.1.2/ergm.count/man/ZIPoisson-ergmProposal-bba55a81.Rd |only ergm.count-4.1.2/ergm.count/man/ergm.count-package.Rd | 54 ergm.count-4.1.2/ergm.count/src/include_stubs.c | 2 ergm.count-4.1.2/ergm.count/src/init.c | 2 ergm.count-4.1.2/ergm.count/src/wtMHproposals.c | 2 ergm.count-4.1.2/ergm.count/src/wtchangestats.c | 2 ergm.count-4.1.2/ergm.count/src/wtchangestats.h | 2 ergm.count-4.1.2/ergm.count/tests/testthat.R | 2 ergm.count-4.1.2/ergm.count/tests/testthat/test-valued-fit.R | 2 ergm.count-4.1.2/ergm.count/tests/testthat/test-valued-sim.R | 2 ergm.count-4.1.2/ergm.count/vignettes/valued.Rmd | 9 47 files changed, 779 insertions(+), 505 deletions(-)
Title: Biased Urn Model Distributions
Description: Statistical models of biased sampling in the form of
univariate and multivariate noncentral hypergeometric distributions,
including Wallenius' noncentral hypergeometric distribution and
Fisher's noncentral hypergeometric distribution.
See vignette("UrnTheory") for explanation of these distributions.
Literature:
Fog, A. (2008a). Calculation Methods for Wallenius' Noncentral Hypergeometric Distribution, Communications in Statistics, Simulation and Computation, 37(2) <doi:10.1080/03610910701790269>.
Fog, A. (2008b). Sampling methods for Wallenius’ and Fisher’s noncentral hypergeometric distributions, Communications in Statistics—Simulation and Computation, 37(2)
<doi:10.1080/03610910701790236>.
Author: Agner Fog
Maintainer: Agner Fog <agner@agner.org>
Diff between BiasedUrn versions 2.0.11 dated 2023-08-19 and 2.0.12 dated 2024-06-16
DESCRIPTION | 8 MD5 | 24 inst/doc/UrnTheory.pdf |binary man/BiasedUrn-1-Package.Rd | 238 +- src/fnchyppr.cpp | 1250 +++++++-------- src/stoc1.cpp | 1386 ++++++++--------- src/stoc3.cpp | 2261 ++++++++++++++------------- src/stocR.cpp | 11 src/stocR.h | 5 src/stocc.h | 4 src/urn1.cpp | 2946 ++++++++++++++++++------------------ src/urn2.cpp | 2470 +++++++++++++++--------------- src/wnchyppr.cpp | 3637 ++++++++++++++++++++++----------------------- 13 files changed, 7180 insertions(+), 7060 deletions(-)
Title: Cryptographic Hash, Extendable-Output and Base64 Functions
Description: Fast and memory-efficient streaming hash functions and base64
encoding and decoding. Performs direct hashing of strings and raw vectors.
Stream hashes files potentially larger than memory, as well as in-memory
objects through R's serialization mechanism. Implementations include the
SHA-256, SHA-3 and 'Keccak' cryptographic hash functions, SHAKE256
extendable-output function (XOF), and 'SipHash' pseudo-random function.
Author: Charlie Gao [aut, cre] ,
Hibiki AI Limited [cph]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between secretbase versions 0.5.0 dated 2024-04-25 and 1.0.0 dated 2024-06-16
DESCRIPTION | 25 +--- MD5 | 42 +++--- NAMESPACE | 2 NEWS.md | 5 R/base.R | 279 +++++----------------------------------------- R/secret.R |only README.md | 128 +++++++++++++-------- build/partial.rdb |binary inst/CITATION | 2 man/base64dec.Rd |only man/base64enc.Rd |only man/keccak.Rd | 2 man/secretbase-package.Rd | 14 +- man/sha256.Rd | 2 man/sha3.Rd | 5 man/shake256.Rd | 4 man/siphash13.Rd | 2 src/base.c |only src/init.c | 2 src/secret.c | 21 ++- src/secret.h | 30 ++++ src/secret2.c | 6 src/secret3.c | 6 tests/tests.R | 35 ++++- 24 files changed, 250 insertions(+), 362 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-08-18 0.6.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-26 1.0.8
2020-04-06 1.0.7
2019-07-01 1.0.6
2019-06-27 1.0.5
2019-06-25 1.0.4
2019-02-25 1.0.3
2018-06-21 1.0.2
2018-04-12 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-10-31 0.1.4
2017-08-03 0.1.3
2017-06-05 0.1.2
2017-05-15 0.1.0
Title: Methods for Correlation Analysis
Description: Lightweight package for computing different kinds
of correlations, such as partial correlations, Bayesian correlations,
multilevel correlations, polychoric correlations, biweight
correlations, distance correlations and more. Part of the 'easystats'
ecosystem. References: Makowski et al. (2020) <doi:10.21105/joss.02306>.
Author: Dominique Makowski [aut, inv] ,
Brenton M. Wiernik [aut, cre] ,
Indrajeet Patil [aut] ,
Daniel Luedecke [aut] ,
Mattan S. Ben-Shachar [aut] ,
Remi Theriault [aut] ,
Mark White [rev],
Maximilian M. Rabe [rev]
Maintainer: Brenton M. Wiernik <brenton@wiernik.org>
Diff between correlation versions 0.8.4 dated 2023-04-06 and 0.8.5 dated 2024-06-16
DESCRIPTION | 25 LICENSE |only MD5 | 213 +-- NAMESPACE | 143 +- NEWS.md | 413 +++---- R/cor_lower.R | 108 - R/cor_smooth.R | 310 ++--- R/cor_sort.R | 210 +-- R/cor_test.R | 635 +++++------ R/cor_test_bayes.R | 222 +-- R/cor_test_biserial.R | 160 +- R/cor_test_biweight.R | 82 - R/cor_test_blomqvist.R | 52 R/cor_test_distance.R | 288 ++--- R/cor_test_freq.R | 158 +- R/cor_test_gamma.R | 58 - R/cor_test_gaussian.R | 24 R/cor_test_hoeffding.R | 50 R/cor_test_percentage.R | 100 - R/cor_test_polychoric.R | 96 - R/cor_test_shepherd.R | 70 - R/cor_test_somers.R | 46 R/cor_test_tetrachoric.R | 68 - R/cor_text.R | 172 +-- R/cor_to_ci.R | 176 +-- R/cor_to_cov.R | 118 +- R/cor_to_p.R | 101 - R/cor_to_pcor.R | 519 ++++----- R/cor_to_spcor.R | 38 R/cormatrix_to_excel.R |only R/correlation-package.R | 36 R/correlation.R | 1295 +++++++++++----------- R/display.R | 170 +- R/matrix_inverse.R | 106 - R/methods.easycorrelation.R | 423 +++---- R/methods_format.R | 414 +++---- R/methods_plot.R | 24 R/methods_print.R | 356 +++--- R/reexports.R | 46 R/utils.R | 56 R/utils_clean_data.R | 22 R/utils_create_diagonal.R | 92 - R/utils_find_correlationtype.R | 132 +- R/utils_get_combinations.R | 80 - R/utils_get_matrix.R | 32 R/utils_remove_redundant.R | 130 +- R/visualisation_recipe.cor_test.R | 341 ++--- R/visualisation_recipe.easycormatrix.R | 687 +++++------- R/visualisation_recipe.easycorrelation.R | 85 - R/z_fisher.R | 55 R/zzz_deprecated.R | 20 README.md | 686 +++++------ build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 66 - inst/WORDLIST | 210 +-- inst/doc/multilevel.R | 106 - inst/doc/multilevel.Rmd | 270 ++-- inst/doc/multilevel.html | 940 +++++++--------- inst/doc/types.R | 224 +-- inst/doc/types.Rmd | 530 ++++----- inst/doc/types.html | 1316 +++++++++++------------ man/cor_lower.Rd | 74 - man/cor_smooth.Rd | 92 - man/cor_sort.Rd | 66 - man/cor_test.Rd | 558 ++++----- man/cor_text.Rd | 56 man/cor_to_cov.Rd | 60 - man/cor_to_p.Rd | 137 +- man/cor_to_pcor.Rd | 116 +- man/cormatrix_to_excel.Rd |only man/correlation-deprecated.Rd | 30 man/correlation-package.Rd | 90 - man/correlation.Rd | 654 +++++------ man/display.easycormatrix.Rd | 158 +- man/is.cor.Rd | 34 man/isSquare.Rd | 34 man/matrix_inverse.Rd | 52 man/reexports.Rd | 50 man/visualisation_recipe.easycormatrix.Rd | 243 ++-- man/z_fisher.Rd | 56 tests/testthat.R | 8 tests/testthat/_snaps/as.list.md | 554 ++++----- tests/testthat/_snaps/cormatrix_to_excel.md |only tests/testthat/_snaps/correlation.md | 76 - tests/testthat/_snaps/display_print_dataframe.md | 144 +- tests/testthat/_snaps/display_print_matrix.md | 128 +- tests/testthat/_snaps/methods.md | 102 - tests/testthat/_snaps/renaming.md | 97 - tests/testthat/_snaps/selecting_variables.md | 100 - tests/testthat/helper.R | 12 tests/testthat/test-as.list.R | 48 tests/testthat/test-cor_multilevel.R | 82 - tests/testthat/test-cor_test.R | 378 +++--- tests/testthat/test-cor_test_na_present.R | 280 ++-- tests/testthat/test-cor_to_cov.R | 16 tests/testthat/test-cor_to_p.R | 16 tests/testthat/test-cor_to_pcor.R | 98 - tests/testthat/test-cormatrix_to_excel.R |only tests/testthat/test-correlation.R | 400 +++--- tests/testthat/test-display_print_dataframe.R | 42 tests/testthat/test-display_print_matrix.R | 64 - tests/testthat/test-grouped_data2.R | 36 tests/testthat/test-methods.R | 26 tests/testthat/test-misc.R | 58 - tests/testthat/test-renaming.R | 36 tests/testthat/test-selecting_variables.R | 64 - vignettes/bibliography.bib | 362 +++--- vignettes/multilevel.Rmd | 270 ++-- vignettes/types.Rmd | 530 ++++----- 110 files changed, 10075 insertions(+), 10117 deletions(-)