Title: 'ShinyItemAnalysis' Modules Development Toolkit
Description: A comprehensive suite of functions designed for constructing
and managing 'ShinyItemAnalysis' modules, supplemented with detailed
guides, ready-to-use templates, linters, and tests. This package
allows developers to seamlessly create and integrate one or more
modules into their existing packages or to start a new module project
from scratch.
Author: Jan Netik [cre, aut] ,
Patricia Martinkova [aut]
Maintainer: Jan Netik <netik@cs.cas.cz>
Diff between SIAtools versions 0.1.0 dated 2024-04-24 and 0.1.1 dated 2024-06-20
DESCRIPTION | 6 ++-- MD5 | 20 +++++++-------- NEWS.md | 6 ++++ R/create_module_project.R | 2 - R/preview_module.R | 17 +++++-------- README.md | 2 - inst/doc/getting_started.html | 5 +++ inst/doc/imports.html | 3 +- inst/rstudio/templates/project/temp_rprofile.R | 32 +++++++++++++------------ man/create_module_project.Rd | 2 - man/preview_module.Rd | 11 +++----- 11 files changed, 57 insertions(+), 49 deletions(-)
Title: Color Palettes Inspired by Paris 2024 Olympic and Paralympic
Games
Description: Palettes inspired by Paris 2024 Olympic and Paralympic Games for
data visualizations. Length of color palettes is configurable.
Author: Maxime Kuntz [aut, cre]
Maintainer: Maxime Kuntz <maxime.kuntz75@gmail.com>
Diff between Paris2024Colours versions 0.1.2 dated 2024-04-16 and 0.2.0 dated 2024-06-20
Paris2024Colours-0.1.2/Paris2024Colours/R/paris2024_palette.R |only Paris2024Colours-0.1.2/Paris2024Colours/man/figures/palette_GamesLook.png |only Paris2024Colours-0.1.2/Paris2024Colours/man/figures/palette_Logo.png |only Paris2024Colours-0.1.2/Paris2024Colours/man/figures/palette_OlympicRings.png |only Paris2024Colours-0.2.0/Paris2024Colours/DESCRIPTION | 7 Paris2024Colours-0.2.0/Paris2024Colours/MD5 | 36 ++-- Paris2024Colours-0.2.0/Paris2024Colours/NAMESPACE | 10 + Paris2024Colours-0.2.0/Paris2024Colours/NEWS.md | 10 + Paris2024Colours-0.2.0/Paris2024Colours/R/colours.R | 7 Paris2024Colours-0.2.0/Paris2024Colours/R/functions.R |only Paris2024Colours-0.2.0/Paris2024Colours/R/scales.R |only Paris2024Colours-0.2.0/Paris2024Colours/README.md | 81 +++++++++- Paris2024Colours-0.2.0/Paris2024Colours/man/figures/README-flame-1.png |only Paris2024Colours-0.2.0/Paris2024Colours/man/figures/README-games_look-1.png |only Paris2024Colours-0.2.0/Paris2024Colours/man/figures/README-generation2024-1.png |only Paris2024Colours-0.2.0/Paris2024Colours/man/figures/README-impact2024-1.png |only Paris2024Colours-0.2.0/Paris2024Colours/man/figures/README-logo-1.png |only Paris2024Colours-0.2.0/Paris2024Colours/man/figures/README-olympic_rings-1.png |only Paris2024Colours-0.2.0/Paris2024Colours/man/figures/README-terre_de_jeux-1.png |only Paris2024Colours-0.2.0/Paris2024Colours/man/figures/README-tickets-1.png |only Paris2024Colours-0.2.0/Paris2024Colours/man/paris2024_palette.Rd | 11 - Paris2024Colours-0.2.0/Paris2024Colours/man/paris2024_palettes.Rd | 2 Paris2024Colours-0.2.0/Paris2024Colours/man/print.palette.Rd | 38 ++-- Paris2024Colours-0.2.0/Paris2024Colours/man/scale_colour_paris2024.Rd |only Paris2024Colours-0.2.0/Paris2024Colours/man/scale_colour_paris2024_c.Rd |only Paris2024Colours-0.2.0/Paris2024Colours/man/scale_colour_paris2024_d.Rd |only Paris2024Colours-0.2.0/Paris2024Colours/man/scale_fill_paris2024.Rd |only Paris2024Colours-0.2.0/Paris2024Colours/man/scale_fill_paris2024_c.Rd |only Paris2024Colours-0.2.0/Paris2024Colours/man/scale_fill_paris2024_d.Rd |only 29 files changed, 157 insertions(+), 45 deletions(-)
More information about Paris2024Colours at CRAN
Permanent link
Title: Labeled Optimal Partitioning
Description: Change-point detection algorithm with
label constraints and a penalty for each change outside of labels.
Read TD Hocking, A Srivastava (2023) <doi:10.1007/s00180-022-01238-z>
for details.
Author: Toby Dylan Hocking
Maintainer: Toby Dylan Hocking <toby.hocking@r-project.org>
Diff between LOPART versions 2020.6.29 dated 2020-06-30 and 2024.6.19 dated 2024-06-20
DESCRIPTION | 11 ++++++----- MD5 | 9 +++++---- NEWS | 23 ++++++++++++----------- inst/CITATION |only src/RcppExports.cpp | 5 +++++ src/interface.cpp | 20 ++++++++++++++------ 6 files changed, 42 insertions(+), 26 deletions(-)
Title: Functional Labeled Optimal Partitioning
Description: Provides an efficient 'C++' code for computing an
optimal segmentation model
with Poisson loss,
up-down constraints,
and label constraints,
as described by Kaufman et al. (2024) <doi:10.1080/10618600.2023.2293216>.
Author: Toby Dylan Hocking [aut, cre]
Maintainer: Toby Dylan Hocking <toby.hocking@r-project.org>
Diff between FLOPART versions 2023.8.31 dated 2023-09-04 and 2024.6.19 dated 2024-06-20
DESCRIPTION | 10 +++++----- MD5 | 11 ++++++----- NEWS | 6 ++++++ build/vignette.rds |binary inst/CITATION |only inst/doc/comparison.html | 20 ++++++++++---------- src/interface.cpp | 8 +++++++- 7 files changed, 34 insertions(+), 21 deletions(-)
Title: Estimate the Number of Factors in Large Nonstationary Datasets
Description: Large panel data sets are often subject to common trends. However, it can be difficult to determine the exact number of these common factors and analyse their properties.
The package implements the Barigozzi and Trapani (2022) <doi:10.1080/07350015.2021.1901719> test, which not only provides an efficient way of estimating the number of common factors in large nonstationary panel data sets, but also gives further insights on factor classes. The routine identifies the existence of (i) a factor subject to a linear trend, (ii) the number of zero-mean I(1) and (iii) zero-mean I(0) factors.
Furthermore, the package includes the Integrated Panel Criteria by Bai (2004) <doi:10.1016/j.jeconom.2003.10.022> that provide a complementary measure for the number of factors.
Author: Paul Haimerl [aut, cre]
Maintainer: Paul Haimerl <p.haimerl@student.maastrichtuniversity.nl>
Diff between BTtest versions 0.10.1 dated 2024-01-11 and 0.10.2 dated 2024-06-20
BTtest-0.10.1/BTtest/LICENSE |only BTtest-0.10.2/BTtest/DESCRIPTION | 17 ++++++++++------- BTtest-0.10.2/BTtest/MD5 | 24 +++++++++++++++--------- BTtest-0.10.2/BTtest/NEWS.md | 5 +++++ BTtest-0.10.2/BTtest/R/BTtest.R | 16 +++++++++++++--- BTtest-0.10.2/BTtest/R/Sim.R | 9 ++++++++- BTtest-0.10.2/BTtest/README.md | 7 +++++-- BTtest-0.10.2/BTtest/build/partial.rdb |binary BTtest-0.10.2/BTtest/man/BTtest.Rd | 4 ++-- BTtest-0.10.2/BTtest/man/BaiIPC.Rd | 2 +- BTtest-0.10.2/BTtest/tests |only 11 files changed, 59 insertions(+), 25 deletions(-)
Title: Area Under Minimum of False Positives and Negatives
Description: Efficient algorithms
<https://jmlr.org/papers/v24/21-0751.html>
for computing Area Under Minimum,
directional derivatives, and
line search optimization of a linear model,
with objective defined as either
max Area Under the Curve or
min Area Under Minimum.
Author: Toby Dylan Hocking [aut, cre],
Jadon Fowler [aut]
Maintainer: Toby Dylan Hocking <toby.hocking@r-project.org>
Diff between aum versions 2023.6.14 dated 2023-06-14 and 2024.6.19 dated 2024-06-20
DESCRIPTION | 22 +- MD5 | 37 ++-- NAMESPACE | 1 NEWS | 10 + R/RcppExports.R | 4 R/aum_line_search.R | 247 ++++++++++++++++++++++----------- R/aum_linear_model.R | 213 +++++++++++++++++++++++----- build/vignette.rds |binary inst/CITATION |only inst/doc/speed-comparison.html | 38 ++--- man/aum_line_search.Rd | 178 +++++++++++++++++------ man/aum_line_search_grid.Rd | 50 +++--- man/aum_linear_model.Rd | 11 - man/aum_linear_model_ls.Rd |only man/set_loss_plot.Rd |only src/RcppExports.cpp | 9 - src/aum_line_search.cpp | 18 ++ src/aum_line_search.h | 1 src/interface.cpp | 45 ++++-- tests/testthat/test-CRAN-line-search.R | 18 +- tests/testthat/test-CRAN.R | 4 21 files changed, 647 insertions(+), 259 deletions(-)
Title: Image Registration Using the 'NiftyReg' Library
Description: Provides an 'R' interface to the 'NiftyReg' image registration tools
<https://github.com/KCL-BMEIS/niftyreg>. Linear and nonlinear registration
are supported, in two and three dimensions.
Author: Jon Clayden [cre, aut] ,
Marc Modat [aut],
Benoit Presles [aut],
Thanasis Anthopoulos [aut],
Pankaj Daga [aut]
Maintainer: Jon Clayden <code@clayden.org>
Diff between RNiftyReg versions 2.8.2 dated 2024-06-04 and 2.8.3 dated 2024-06-20
DESCRIPTION | 8 +++--- MD5 | 8 +++--- NEWS | 7 +++++ README.md | 57 +++++++++++++++++++++++----------------------- src/reg-lib/_reg_aladin.h | 4 --- 5 files changed, 44 insertions(+), 40 deletions(-)
Title: 'Targets' Extension for 'SQL' Queries
Description: Provides an extension for 'SQL' queries as separate file
within 'targets' pipelines. The shorthand creates two targets,
the query file and the query result.
Author: David Ranzolin [aut, cre, cph]
Maintainer: David Ranzolin <daranzolin@gmail.com>
Diff between sqltargets versions 0.0.1 dated 2024-04-24 and 0.1.0 dated 2024-06-20
DESCRIPTION | 16 +++++++-------- MD5 | 26 +++++++++++++------------ NAMESPACE | 1 NEWS.md | 6 +++++ R/source_sql_to_dataframe.R | 15 +++++++------- R/sqltargets-option.R | 3 +- R/sqltargets.R | 1 R/tar_sql_raw.R | 2 - R/zzz.R | 2 + README.md | 28 +++++++++++++++++++-------- inst/query.sql | 3 -- inst/tar_visnetwork.png |only man/sqltargets-options.Rd | 3 +- tests/testthat/test-tar-sql.R | 4 +-- tests/testthat/test-tar-sqltargets-options.R |only 15 files changed, 66 insertions(+), 44 deletions(-)
Title: Client for Delphi's 'Epidata' API
Description: The Delphi 'Epidata' API provides real-time access to epidemiological surveillance data for influenza, 'COVID-19', and other diseases for the USA at various geographical resolutions, both from official government sources such as the Center for Disease Control (CDC) and Google Trends and private partners such as Facebook and Change 'Healthcare'. It is built and maintained by the Carnegie Mellon University Delphi research group. To cite this API: David C. Farrow, Logan C. Brooks, Aaron 'Rumack', Ryan J. 'Tibshirani', 'Roni' 'Rosenfeld' (2015). Delphi 'Epidata' API. <https://github.com/cmu-delphi/delphi-epidata>.
Author: Logan Brooks [aut],
Dmitry Shemetov [aut],
Samuel Gratzl [aut],
David Weber [ctb, cre],
Nat DeFries [ctb],
Alex Reinhart [ctb],
Daniel McDonald [ctb],
Kean Ming Tan [ctb],
Will Townes [ctb],
George Haff [ctb],
Kathryn Mazaitis [ctb]
Maintainer: David Weber <davidweb@andrew.cmu.edu>
Diff between epidatr versions 1.1.1 dated 2024-03-04 and 1.2.0 dated 2024-06-20
DESCRIPTION | 8 - MD5 | 26 ++-- NEWS.md | 25 +++- R/endpoints.R | 44 +++++-- R/epidatr-package.R | 10 + R/model.R | 2 README.md | 5 build/vignette.rds |binary inst/doc/epidatr.html | 238 ++++++++++++++++++++-------------------- inst/doc/versioned-data.html | 98 ++++++++-------- man/epidatr-package.Rd | 1 man/pub_covidcast.Rd | 6 - tests/testthat/test-cache.R | 12 +- tests/testthat/test-endpoints.R | 64 ++++++++++ 14 files changed, 328 insertions(+), 211 deletions(-)
Title: Dynamic Function-Oriented 'Make'-Like Declarative Pipelines
Description: Pipeline tools coordinate the pieces of computationally
demanding analysis projects.
The 'targets' package is a 'Make'-like pipeline tool for statistics and
data science in R. The package skips costly runtime for tasks
that are already up to date,
orchestrates the necessary computation with implicit parallel computing,
and abstracts files as R objects. If all the current output matches
the current upstream code and data, then the whole pipeline is up
to date, and the results are more trustworthy than otherwise.
The methodology in this package
borrows from GNU 'Make' (2015, ISBN:978-9881443519)
and 'drake' (2018, <doi:10.21105/joss.00550>).
Author: William Michael Landau [aut, cre]
,
Matthew T. Warkentin [ctb],
Mark Edmondson [ctb] ,
Samantha Oliver [rev] ,
Tristan Mahr [rev] ,
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between targets versions 1.7.0 dated 2024-04-17 and 1.7.1 dated 2024-06-20
targets-1.7.0/targets/R/utils_rstudio_addins.R |only targets-1.7.1/targets/DESCRIPTION | 20 +- targets-1.7.1/targets/MD5 | 110 +++++++-------- targets-1.7.1/targets/NAMESPACE | 2 targets-1.7.1/targets/NEWS.md | 6 targets-1.7.1/targets/R/class_pipeline.R | 10 + targets-1.7.1/targets/R/class_target.R | 2 targets-1.7.1/targets/R/tar_make.R | 27 --- targets-1.7.1/targets/R/tar_meta.R | 1 targets-1.7.1/targets/R/tar_package.R | 2 targets-1.7.1/targets/R/tar_renv.R | 2 targets-1.7.1/targets/R/tar_seed_create.R | 9 - targets-1.7.1/targets/R/tar_watch.R | 28 ++- targets-1.7.1/targets/R/tar_watch_ui.R | 64 ++++---- targets-1.7.1/targets/R/utils_assert.R | 2 targets-1.7.1/targets/R/utils_rstudio.R |only targets-1.7.1/targets/build/partial.rdb |binary targets-1.7.1/targets/build/vignette.rds |binary targets-1.7.1/targets/inst/rstudio/addins.dcf | 2 targets-1.7.1/targets/inst/tar_watch/about.md | 14 + targets-1.7.1/targets/man/tar_config_get.Rd | 12 - targets-1.7.1/targets/man/tar_config_projects.Rd | 12 - targets-1.7.1/targets/man/tar_config_set.Rd | 12 - targets-1.7.1/targets/man/tar_config_unset.Rd | 12 - targets-1.7.1/targets/man/tar_config_yaml.Rd | 12 - targets-1.7.1/targets/man/tar_crew.Rd | 12 - targets-1.7.1/targets/man/tar_delete.Rd | 12 - targets-1.7.1/targets/man/tar_destroy.Rd | 12 - targets-1.7.1/targets/man/tar_errored.Rd | 12 - targets-1.7.1/targets/man/tar_glimpse.Rd | 12 - targets-1.7.1/targets/man/tar_invalidate.Rd | 12 - targets-1.7.1/targets/man/tar_load.Rd | 12 - targets-1.7.1/targets/man/tar_load_globals.Rd | 12 - targets-1.7.1/targets/man/tar_load_raw.Rd | 12 - targets-1.7.1/targets/man/tar_make.Rd | 13 - targets-1.7.1/targets/man/tar_make_clustermq.Rd | 12 - targets-1.7.1/targets/man/tar_make_future.Rd | 12 - targets-1.7.1/targets/man/tar_manifest.Rd | 12 - targets-1.7.1/targets/man/tar_mermaid.Rd | 12 - targets-1.7.1/targets/man/tar_meta.Rd | 12 - targets-1.7.1/targets/man/tar_objects.Rd | 12 - targets-1.7.1/targets/man/tar_outdated.Rd | 12 - targets-1.7.1/targets/man/tar_process.Rd | 12 - targets-1.7.1/targets/man/tar_progress.Rd | 12 - targets-1.7.1/targets/man/tar_prune.Rd | 12 - targets-1.7.1/targets/man/tar_read.Rd | 12 - targets-1.7.1/targets/man/tar_read_raw.Rd | 12 - targets-1.7.1/targets/man/tar_renv.Rd | 2 targets-1.7.1/targets/man/tar_seed_create.Rd | 7 targets-1.7.1/targets/man/tar_seed_get.Rd | 7 targets-1.7.1/targets/man/tar_seed_set.Rd | 7 targets-1.7.1/targets/man/tar_source.Rd | 12 - targets-1.7.1/targets/man/tar_visnetwork.Rd | 12 - targets-1.7.1/targets/man/tar_watch.Rd | 5 targets-1.7.1/targets/man/tar_watch_app_ui.Rd | 5 targets-1.7.1/targets/tests/interactive/test-job.R | 1 targets-1.7.1/targets/tests/testthat/test-class_target.R | 2 57 files changed, 169 insertions(+), 517 deletions(-)
Title: Statistical Functions for the
Maxwell-Boltzmann-Bose-Einstein-Fermi-Dirac (MBBEFD) Family of
Distributions
Description: Provides probability mass, distribution, quantile, random variate
generation, and method-of-moments parameter fitting for the MBBEFD family of
distributions used in insurance modeling as described in Bernegger (1997)
<doi:10.2143/AST.27.1.563208> without any external dependencies.
Author: Avraham Adler [aut, cre, cph]
Maintainer: Avraham Adler <Avraham.Adler@gmail.com>
Diff between MBBEFDLite versions 0.0.2 dated 2024-05-19 and 0.0.3 dated 2024-06-20
DESCRIPTION | 6 ++-- MD5 | 20 +++++++------- R/mom.R | 6 +--- README.md | 1 build/partial.rdb |binary inst/CITATION | 4 +- inst/NEWS.Rd | 11 +++++++ inst/tinytest/test_package_metadata.R | 48 +++++++++++++++++++++++----------- man/MoMmb.Rd | 24 ++++++++++++----- man/dpqrmb.Rd | 2 - man/ecmb.Rd | 6 ++-- 11 files changed, 82 insertions(+), 46 deletions(-)
Title: A Distributed Worker Launcher Framework
Description: In computationally demanding analysis projects,
statisticians and data scientists asynchronously
deploy long-running tasks to distributed systems,
ranging from traditional clusters to cloud services.
The 'NNG'-powered 'mirai' R package by Gao (2023)
<doi:10.5281/zenodo.7912722> is a sleek
and sophisticated scheduler that
efficiently processes these intense workloads.
The 'crew' package extends 'mirai' with a unifying
interface for third-party worker launchers.
Inspiration also comes from packages.
'future' by Bengtsson (2021) <doi:10.32614/RJ-2021-048>,
'rrq' by FitzJohn and Ashton (2023) <https://github.com/mrc-ide/rrq>,
'clustermq' by Schubert (2019) <doi:10.1093/bioinformatics/btz284>),
and 'batchtools' by Lang, Bischel, and Surmann (2017)
<doi:10.21105/joss.00135>.
Author: William Michael Landau [aut, cre]
,
Daniel Woodie [ctb],
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between crew versions 0.9.3 dated 2024-05-22 and 0.9.4 dated 2024-06-20
DESCRIPTION | 6 MD5 | 40 - NEWS.md | 6 R/crew_client.R | 24 R/crew_controller_local.R | 4 inst/doc/plugins.R | 4 inst/doc/plugins.Rmd | 4 inst/doc/plugins.html | 76 +-- inst/doc/shiny.Rmd | 459 ++++-------------- inst/doc/shiny.html | 681 +++++++++------------------- man/crew_class_client.Rd | 5 man/crew_client.Rd | 10 man/crew_controller_local.Rd | 8 tests/local/test-backlog_crash.R | 7 tests/local/test-launcher-system2.R | 4 tests/testthat/test-crew_client.R | 4 tests/testthat/test-crew_controller_local.R | 4 tests/testthat/test-crew_monitor_local.R | 2 vignettes/figures/coins.png |binary vignettes/plugins.Rmd | 4 vignettes/shiny.Rmd | 459 ++++-------------- 21 files changed, 575 insertions(+), 1236 deletions(-)
Title: Cluster-Robust (Sandwich) Variance Estimators with Small-Sample
Corrections
Description: Provides several cluster-robust variance estimators (i.e.,
sandwich estimators) for ordinary and weighted least squares linear regression
models, including the bias-reduced linearization estimator introduced by Bell
and McCaffrey (2002)
<https://www150.statcan.gc.ca/n1/pub/12-001-x/2002002/article/9058-eng.pdf> and
developed further by Pustejovsky and Tipton (2017)
<DOI:10.1080/07350015.2016.1247004>. The package includes functions for estimating
the variance- covariance matrix and for testing single- and multiple-
contrast hypotheses based on Wald test statistics. Tests of single regression
coefficients use Satterthwaite or saddle-point corrections. Tests of multiple-
contrast hypotheses use an approximation to Hotelling's T-squared distribution.
Methods are provided for a variety of fitted models, including lm() and mlm
objects, glm(), geeglm() (from package 'geepack'), ivreg() (from package 'AER'), ivreg() (from package 'ivreg' when
estimated by ordinary least squares), [...truncated...]
Author: James Pustejovsky [aut, cre]
Maintainer: James Pustejovsky <jepusto@gmail.com>
Diff between clubSandwich versions 0.5.10 dated 2023-07-19 and 0.5.11 dated 2024-06-20
DESCRIPTION | 10 +-- MD5 | 36 ++++++------- NEWS.md | 5 + R/data-documentation.R | 2 R/rma-mv.R | 80 +++++++++++++++++++------------ build/partial.rdb |binary build/vignette.rds |binary inst/doc/Wald-tests-in-clubSandwich.R | 4 - inst/doc/Wald-tests-in-clubSandwich.html | 9 +-- inst/doc/meta-analysis-with-CRVE.R | 8 +-- inst/doc/meta-analysis-with-CRVE.html | 27 +++++----- inst/doc/panel-data-CRVE.R | 14 ++--- inst/doc/panel-data-CRVE.html | 6 +- man/MortalityRates.Rd | 2 man/impute_covariance_matrix.Rd | 60 +++++++++++++---------- man/pattern_covariance_matrix.Rd | 8 +++ man/vcovCR.rma.mv.Rd | 2 tests/testthat/test_geeglm.R | 2 tests/testthat/test_plm-ID-variables.R | 3 - 19 files changed, 160 insertions(+), 118 deletions(-)
Title: Structural Equation Modeling and Confirmatory Network Analysis
Description: Multi-group (dynamical) structural equation models in combination with confirmatory network models from cross-sectional, time-series and panel data <doi:10.31234/osf.io/8ha93>. Allows for confirmatory testing and fit as well as exploratory model search.
Author: Sacha Epskamp
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>
Diff between psychonetrics versions 0.12 dated 2024-05-21 and 0.13 dated 2024-06-20
DESCRIPTION | 6 MD5 | 481 ++-- NAMESPACE | 394 +-- NEWS | 352 +-- R/00_codeOrganization.R | 44 R/00_steps_to_implement_distribution.R | 20 R/00_steps_to_implement_estimator.R | 18 R/00_steps_to_implement_model.R | 30 R/01_classes.R | 373 ++- R/02_algebrahelpers_Solve.R | 122 - R/02_algebrahelpers_blockToeplitz.R | 40 R/02_algebrahelpers_checkJacobian.R | 250 +- R/02_algebrahelpers_expected_latent_residual_covs.R | 124 - R/02_algebrahelpers_expectedmodel.R | 48 R/02_algebrahelpers_kronecker.R | 2 R/02_algebrahelpers_lavUtils.R | 48 R/02_algebrahelpers_matrixexponent.R | 20 R/02_algebrahelpers_maxcor.R | 22 R/02_algebrahelpers_modelMatrix.R | 26 R/02_algebrahelpers_quantiletransform.R | 20 R/02_algebrahelpers_spectralshift.R | 50 R/02_algebrahelpers_trysolve.R | 52 R/02_algebrahelpers_vectorize.R | 56 R/02_algebrahelpers_vectorizeMatrices.R | 116 - R/02_algebrahelpers_weighted_geomean.R | 2 R/02_modelformation_PCCPDC.R | 32 R/03_modelformation_adjust_p_values.R | 116 - R/03_modelformation_defaultoptimizer.R | 6 R/03_modelformation_factorstart.R | 40 R/03_modelformation_fixAdj.R | 162 - R/03_modelformation_fixMatrix.R | 160 - R/03_modelformation_fixMu.R | 82 R/03_modelformation_fixTau.R | 170 - R/03_modelformation_formModelMatrices.R | 152 - R/03_modelformation_generateParameterTable.R | 540 ++--- R/03_modelformation_impliedcovstructures.R | 272 +- R/03_modelformation_labtoind.R | 56 R/03_modelformation_matrixSetup_Isingbeta.R | 50 R/03_modelformation_matrixSetup_Isingtau.R | 54 R/03_modelformation_matrixSetup_SD.R | 102 R/03_modelformation_matrixSetup_beta.R | 76 R/03_modelformation_matrixSetup_cholesky.R | 126 - R/03_modelformation_matrixSetup_delta.R | 124 - R/03_modelformation_matrixSetup_isingomega.R | 64 R/03_modelformation_matrixSetup_kappa.R | 134 - R/03_modelformation_matrixSetup_lambda.R | 452 ++-- R/03_modelformation_matrixSetup_mu.R | 68 R/03_modelformation_matrixSetup_omega.R | 200 - R/03_modelformation_matrixSetup_rho.R | 104 R/03_modelformation_matrixSetup_sigma.R | 130 - R/03_modelformation_matrixSetup_tau.R | 74 R/03_modelformation_missingpatterns.R | 314 +- R/03_modelformation_missingpatterns_covs.R | 174 - R/03_modelformation_samplestats.R | 16 R/03_modelformation_samplestats_norawts.R | 1223 +++++------ R/03_modelformation_samplestats_rawts.R | 192 - R/03_modelformation_sparseordense.R | 90 R/03_modelformation_startvaluesandbounds.R | 104 R/03_modelformation_tsData.R | 344 +-- R/04_generalFit_fitfunction.R | 88 R/04_generalFit_gradient.R | 258 +- R/04_generalFit_logLikelihood.R | 36 R/04_generalfit_FisherInformation.R | 468 ++-- R/04_generalfit_VCOV.R | 28 R/04_generalfit_impliedModel.R | 80 R/04_generalfit_loglikelihood_Ising.R | 176 - R/04_generalfit_loglikelihood_gauss.R | 232 +- R/04_generalfit_prepareModel.R | 154 - R/04_modelformation_matrixSetup_flexcov.R | 138 - R/05_MLestimator_expected_hessian_Gauss.R | 126 - R/05_MLestimator_expected_hessian_Ising.R | 178 - R/05_MLestimator_fit_Gauss.R | 36 R/05_MLestimator_fit_Ising.R | 76 R/05_MLestimator_fitfunction.R | 22 R/05_MLestimator_gradient_Gauss.R | 146 - R/05_MLestimator_gradient_Ising.R | 164 - R/06_ULS_expectedHessian.R | 64 R/06_ULS_fitfunction.R | 154 - R/06_ULS_gradient.R | 124 - R/06_weightsMatrix.R | 76 R/07_FIMLestimator_expected_hessian_Gauss.R | 302 +- R/07_FIMLestimator_fit_Gauss.R | 194 - R/07_FIMLestimator_fitfunction.R | 20 R/07_FIMLestimator_gradient_Gauss.R | 302 +- R/08_outputHelpers_NAtoFALSE.R | 4 R/08_outputHelpers_NAtoTRUE.R | 4 R/08_outputHelpers_goodNum.R | 79 R/08_outputHelpers_logo.R | 65 R/09_modelmodification_clearpars.R | 40 R/09_modelmodifivation_emergencystart.R | 166 - R/14_varcov_derivatives.R | 434 ++-- R/14_varcov_implied.R | 92 R/14_varcov_prepare.R | 136 - R/15_lvm_derivatives.R | 428 +-- R/15_lvm_identify.R | 436 ++-- R/15_lvm_implied.R | 122 - R/15_lvm_prepare.R | 122 - R/16_var1_derivatives.R | 362 +-- R/16_var1_implied.R | 150 - R/16_var1_prepare.R | 188 - R/18_dlvm1_derivatives.R | 814 +++---- R/18_dlvm1_identify.R | 518 ++-- R/18_dlvm1_implied.R | 258 +- R/18_dlvm1_prepare.R | 116 - R/19_tsdlvm1_derivatives.R | 424 +-- R/19_tsdlvm1_identify.R | 396 +-- R/19_tsdlvm1_implied.R | 218 +- R/19_tsdlvm1_prepare.R | 116 - R/20_meta_varcov_derivatives.R | 584 ++--- R/20_meta_varcov_implied.R | 148 - R/20_meta_varcov_prepare.R | 98 R/21_Ising_derivatives.R | 52 R/21_Ising_helperfunctions.R | 32 R/21_Ising_identify.R | 142 - R/21_Ising_implied.R | 20 R/21_Ising_prepare.R | 126 - R/22_ml_lvm_derivatives.R | 424 +-- R/22_ml_lvm_identify.R | 576 ++--- R/22_ml_lvm_implied.R | 258 +- R/22_ml_lvm_prepare.R | 116 - R/RcppExports.R | 1342 ++++++------ R/a_models_Ising.R | 468 ++-- R/a_models_bifactor.R | 90 R/a_models_cholesky.R | 18 R/a_models_corr.R | 18 R/a_models_dlvm1.R | 2155 ++++++++++---------- R/a_models_frombootnet.R | 78 R/a_models_ggm.R | 18 R/a_models_gvar.R | 8 R/a_models_joingroups.R | 244 +- R/a_models_latentgrowth.R | 198 - R/a_models_lnm.R | 6 R/a_models_lrnm.R | 6 R/a_models_lvm.R | 852 +++---- R/a_models_meta_ggm.R | 4 R/a_models_meta_varcov.R | 1304 ++++++------ R/a_models_ml_lnm.R | 4 R/a_models_ml_lrnm.R | 4 R/a_models_ml_lvm.R | 1190 +++++------ R/a_models_ml_rnm.R | 4 R/a_models_ml_tsdlvm1.R | 356 +-- R/a_models_ml_tslvgvar.R | 44 R/a_models_panelgvar.R | 154 - R/a_models_precision.R | 18 R/a_models_rnm.R | 6 R/a_models_sem.R | 6 R/a_models_tsdlvm1.R | 820 +++---- R/a_models_tslvgvar.R | 6 R/a_models_var1.R | 637 ++--- R/a_models_varcov.R | 806 +++---- R/b_modelexpansions_addMIs.R | 450 ++-- R/b_modelexpansions_addSEs.R | 206 - R/b_modelexpansions_addfit.R | 560 ++--- R/b_modelexpansions_identify.R | 70 R/b_modelexpansions_updateModel.R | 32 R/c_runmodel.R | 1732 ++++++++-------- R/d_stepup.R | 890 ++++---- R/e_modelmodifications_fixpar.R | 218 +- R/e_modelmodifications_fixstart.R | 72 R/e_modelmodifications_freepar.R | 264 +- R/e_modelmodifications_groupequal.R | 266 +- R/e_modelmodifications_groupfree.R | 252 +- R/e_modelmodifications_intersectionmodel.R | 414 +-- R/e_modelmodifications_partialprune.R | 506 ++-- R/e_modelmodifications_prune.R | 634 ++--- R/e_modelmodifications_setequal.R | 110 - R/e_modelmodifications_transmod.R | 574 ++--- R/e_modelmodifications_unionmodel.R | 404 +-- R/f_conveneince_changedata.R | 168 - R/f_conveneince_fake_optimr.R | 60 R/f_conveneince_generate.R | 66 R/f_conveneince_setEstimator.R | 6 R/f_conveneince_setoptimizer.R | 56 R/f_conveneince_setverbose.R | 8 R/f_conveneince_usecpp.R | 22 R/f_convenience_CIplot.R | 710 ++++-- R/f_convenience_MIs.R | 260 +- R/f_convenience_aggregate_bootstraps.R |only R/f_convenience_bootstrap.R | 174 - R/f_convenience_bootstrap_SEs.R | 12 R/f_convenience_bootstrap_warning.R |only R/f_convenience_covML.R | 24 R/f_convenience_ergodicity.R | 450 ++-- R/f_convenience_factorscores.R | 164 - R/f_convenience_fit.R | 80 R/f_convenience_getmatrix.R | 284 +- R/f_convenience_logbook.R | 84 R/f_convenience_parameters.R | 237 +- R/f_convenience_printMethod.R | 230 +- R/f_convenience_printMethod_bootstrap.R |only R/f_convenience_residuals.R | 64 R/f_convenience_simplestructure.R | 22 R/g_simulations_replicator.R | 154 - R/h_modelsearch.R | 878 ++++---- build/partial.rdb |binary man/CIplot.Rd | 224 +- man/Ising.Rd | 354 +-- man/Jonas.Rd | 64 man/MIs.Rd | 134 - man/StarWars.Rd | 76 man/aggregate_bootstraps.Rd |only man/algebraMatrices.Rd | 86 man/bifactor.Rd | 72 man/bootstrap.Rd | 78 man/changedata.Rd | 82 man/convenience.Rd | 116 - man/covML.Rd | 94 man/diagnostics.Rd | 106 man/dlvm1_family.Rd | 472 ++-- man/emergencystart.Rd | 54 man/esa.Rd | 140 - man/factorscores.Rd | 56 man/fit.Rd | 96 man/fixpar_freepar.Rd | 126 - man/fixstart.Rd | 68 man/generate.Rd | 54 man/getVCOV.Rd | 56 man/getmatrix.Rd | 134 - man/groupequal_groupfree.Rd | 108 - man/latentgrowth.Rd | 146 - man/logbook.Rd | 52 man/lvm_family.Rd | 1092 +++++----- man/meta_varcov.Rd | 258 +- man/ml_lvm.Rd | 386 +-- man/ml_tsdlvm1.Rd | 124 - man/modelsearch.Rd | 182 - man/modelupdate.Rd | 102 man/parameters.Rd | 96 man/parequal.Rd | 80 man/partialprune.Rd | 106 man/prune.Rd | 182 - man/psychonetrics-class.Rd | 122 - man/psychonetrics-package.Rd | 50 man/psychonetrics_bootstrap-class.Rd |only man/psychonetrics_log-class.Rd | 68 man/runmodel.Rd | 186 - man/setverbose.Rd | 52 man/simplestructure.Rd | 44 man/stepup.Rd | 204 - man/transmod.Rd | 158 - man/tsdlvm1_family.Rd | 416 +-- man/unionmodel_intersectionmodel.Rd | 94 man/var1_family.Rd | 472 ++-- man/varcov_family.Rd | 469 ++-- 244 files changed, 25988 insertions(+), 25359 deletions(-)
Title: Package of the German Book "Statistik mit R und RStudio" by
Joerg grosse Schlarmann
Description: All datasets and functions used in the german book "Statistik mit R und RStudio" by grosse Schlarmann (2010-2024) <https://www.produnis.de/R/>.
Author: Joerg grosse Schlarmann [aut, cre]
Maintainer: Joerg grosse Schlarmann <schlarmann@produnis.de>
Diff between jgsbook versions 1.0.5 dated 2024-05-24 and 1.0.6 dated 2024-06-20
DESCRIPTION | 10 ++-- MD5 | 11 ++-- NAMESPACE | 3 + NEWS.md | 5 ++ R/functions.R | 104 ++++++++++++++++++++++++++++++++++++++++++++- man/compare.lm.Rd |only man/pairwise.chisq.test.Rd | 2 7 files changed, 123 insertions(+), 12 deletions(-)
Title: Connecting Stream Mining Components Using Sockets and Web
Services
Description: Adds functionality to connect stream mining components from package stream using sockets and Web services. The package can be used create distributed workflows and create plumber-based Web services which can be deployed on most common cloud services.
Author: Michael Hahsler [aut, cre, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between streamConnect versions 0.0-4 dated 2024-06-13 and 0.0-6 dated 2024-06-20
DESCRIPTION | 8 - MD5 | 30 ++-- NEWS.md | 6 R/DSD_ReadSocket.R | 2 R/plumber.R | 15 ++ R/publish_DSC_via_WebService.R | 6 R/publish_DSD_via_Socket.R | 22 ++- R/publish_DSD_via_WebService.R | 2 inst/doc/connections.R | 8 + inst/doc/connections.Rmd | 31 +++- inst/doc/connections.html | 244 ++++++++++++++++++-------------------- man/DSD_ReadSocket.Rd | 2 man/publish_DSC_via_WebService.Rd | 6 man/publish_DSD_via_Socket.Rd | 13 -- man/publish_DSD_via_WebService.Rd | 2 vignettes/connections.Rmd | 31 +++- 16 files changed, 237 insertions(+), 191 deletions(-)
Title: Reporting Tables
Description: Reporting tables often have structure that goes beyond simple
rectangular data. The 'rtables' package provides a framework for
declaring complex multi-level tabulations and then applying them to
data. This framework models both tabulation and the resulting tables
as hierarchical, tree-like objects which support sibling sub-tables,
arbitrary splitting or grouping of data in row and column dimensions,
cells containing multiple values, and the concept of contextual
summary computations. A convenient pipe-able interface is provided for
declaring table layouts and the corresponding computations, and then
applying them to data.
Author: Gabriel Becker [aut] ,
Adrian Waddell [aut],
Daniel Sabanes Bove [ctb],
Maximilian Mordig [ctb],
Davide Garolini [ctb],
Emily de la Rua [ctb],
Abinaya Yogasekaram [ctb],
Joe Zhu [ctb, cre],
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Joe Zhu <joe.zhu@roche.com>
Diff between rtables versions 0.6.7 dated 2024-04-15 and 0.6.8 dated 2024-06-20
DESCRIPTION | 25 - MD5 | 194 +++++---- NAMESPACE | 17 NEWS.md | 29 + R/00tabletrees.R | 139 ++++-- R/argument_conventions.R | 16 R/as_html.R | 47 +- R/colby_constructors.R | 162 ++++++- R/make_split_fun.R | 85 +++- R/make_subset_expr.R | 71 ++- R/package.R | 1 R/split_funs.R | 14 R/tree_accessors.R | 617 ++++++++++++++++++++++++++++-- R/tt_compatibility.R | 137 +++++- R/tt_dotabulation.R | 66 ++- R/tt_export.R | 19 R/tt_paginate.R | 221 +++++++--- R/tt_showmethods.R | 50 ++ R/tt_sort.R | 14 R/tt_toString.R | 162 +++++-- build/vignette.rds |binary inst/WORDLIST | 10 inst/doc/advanced_usage.html | 4 inst/doc/baseline.html | 4 inst/doc/clinical_trials.Rmd | 4 inst/doc/clinical_trials.html | 9 inst/doc/col_counts.R |only inst/doc/col_counts.Rmd |only inst/doc/col_counts.html |only inst/doc/custom_appearance.html | 4 inst/doc/example_analysis_coxreg.html | 4 inst/doc/exploratory_analysis.Rmd | 2 inst/doc/exploratory_analysis.html | 8 inst/doc/format_precedence.html | 4 inst/doc/introduction.Rmd | 9 inst/doc/introduction.html | 14 inst/doc/introspecting_tables.R | 11 inst/doc/introspecting_tables.Rmd | 16 inst/doc/introspecting_tables.html | 60 +- inst/doc/manual_table_construction.html | 4 inst/doc/sorting_pruning.html | 8 inst/doc/split_functions.html | 4 inst/doc/subsetting_tables.Rmd | 4 inst/doc/subsetting_tables.html | 8 inst/doc/tabulation_dplyr.Rmd | 8 inst/doc/tabulation_dplyr.html | 12 inst/doc/title_footer.html | 4 man/MultiVarSplit.Rd | 11 man/VarLevelSplit.Rd | 15 man/basic_table.Rd | 23 - man/build_table.Rd | 5 man/cbind_rtables.Rd | 7 man/cinfo.Rd | 2 man/col_accessors.Rd | 78 +++ man/colcount_visible.Rd |only man/coltree_structure.Rd |only man/constr_args.Rd | 8 man/cutsplits.Rd | 15 man/data.frame_export.Rd | 2 man/export_as_docx.Rd | 2 man/facet_colcount.Rd |only man/facet_colcounts_visible-set.Rd |only man/figures/lifecycle-archived.svg |only man/figures/lifecycle-defunct.svg |only man/figures/lifecycle-deprecated.svg |only man/figures/lifecycle-experimental.svg |only man/figures/lifecycle-maturing.svg |only man/figures/lifecycle-questioning.svg |only man/figures/lifecycle-soft-deprecated.svg |only man/figures/lifecycle-stable.svg |only man/figures/lifecycle-superseded.svg |only man/formatters_methods.Rd | 39 + man/insert_rrow.Rd | 5 man/int_methods.Rd | 81 +++ man/lyt_args.Rd | 11 man/make_col_df.Rd | 13 man/make_split_fun.Rd | 20 man/make_split_result.Rd | 32 + man/manual_cols.Rd | 4 man/matrix_form-VTableTree-method.Rd | 12 man/paginate.Rd | 9 man/qtable_layout.Rd | 16 man/rbind.Rd | 8 man/rm_all_colcounts.Rd |only man/score_funs.Rd | 3 man/sort_at_path.Rd | 11 man/split_cols_by.Rd | 11 man/split_cols_by_multivar.Rd | 11 man/tabclasses.Rd | 8 man/tostring.Rd | 11 man/tt_to_flextable.Rd | 6 man/varcuts.Rd | 19 tests/testthat/test-binding.R | 40 + tests/testthat/test-deprecated.R | 6 tests/testthat/test-exporters.R | 46 ++ tests/testthat/test-lyt-tabulation.R | 10 tests/testthat/test-pagination.R | 21 - tests/testthat/test-printing.R | 143 ++++++ tests/testthat/test-regressions.R | 22 + tests/testthat/test-split_funs.R | 33 + vignettes/clinical_trials.Rmd | 4 vignettes/col_counts.Rmd |only vignettes/exploratory_analysis.Rmd | 2 vignettes/introduction.Rmd | 9 vignettes/introspecting_tables.Rmd | 16 vignettes/subsetting_tables.Rmd | 4 vignettes/tabulation_dplyr.Rmd | 8 107 files changed, 2536 insertions(+), 627 deletions(-)
Title: Create Tidy Data Frames of Marginal Effects for 'ggplot' from
Model Outputs
Description: Compute marginal effects and adjusted predictions from statistical
models and returns the result as tidy data frames. These data frames are
ready to use with the 'ggplot2'-package. Effects and predictions can be
calculated for many different models. Interaction terms, splines and
polynomial terms are also supported. The main functions are ggpredict(),
ggemmeans() and ggeffect(). There is a generic plot()-method to plot the
results using 'ggplot2'.
Author: Daniel Luedecke [aut, cre] ,
Frederik Aust [ctb] ,
Sam Crawley [ctb] ,
Mattan S. Ben-Shachar [ctb] ,
Sean C. Anderson [ctb]
Maintainer: Daniel Luedecke <d.luedecke@uke.de>
Diff between ggeffects versions 1.6.0 dated 2024-05-18 and 1.7.0 dated 2024-06-20
DESCRIPTION | 6 MD5 | 162 +- NEWS.md | 55 R/collapse_re_data.R | 3 R/emmeans_prediction_data.R | 49 R/get_predictions_MixMod.R | 50 R/get_predictions_clm.R | 2 R/get_predictions_gam.R | 6 R/get_predictions_glm.R | 2 R/get_predictions_glmgee.R |only R/get_predictions_glmmTMB.R | 34 R/get_predictions_lm.R | 2 R/get_predictions_merMod.R | 4 R/get_predictions_sdmTMB.R | 2 R/get_predictions_stan.R | 4 R/get_predictions_survival.R | 9 R/get_predictions_vglm.R | 2 R/get_predictions_wbm.R | 6 R/get_predictions_zeroinfl.R | 48 R/ggaverage.R | 5 R/ggeffect.R | 34 R/ggemmeans.R | 66 R/ggemmeans_add_confint.R | 4 R/ggemmeans_zi_predictions.R | 6 R/ggpredict.R | 22 R/moderator_pattern.R | 81 - R/plot.R | 2 R/predict_response.R | 46 R/predict_zero_inflation.R | 4 R/predictions.R | 6 R/print.R | 12 R/simulate_predictions.R | 4 R/standard_error_predictions.R | 6 R/test_predictions.R | 80 - R/test_predictions_emmeans.R | 1 R/test_predictions_ggeffects.R | 63 R/utils.R | 2 R/utils_get_data_grid.R | 30 R/utils_get_representative_values.R | 2 R/utils_ggpredict.R | 73 R/utils_handle_labels.R | 38 R/utils_is_empty.R | 2 R/utils_model_function.R | 4 R/utils_set_attr.R | 2 R/vcov.R | 138 + README.md | 43 build/vignette.rds |binary inst/doc/content.Rmd | 3 inst/doc/content.html | 4 man/figures/callout.css | 3 man/ggpredict.Rd | 25 man/predict_response.Rd | 30 man/test_predictions.Rd | 16 man/values_at.Rd | 3 man/vcov.Rd | 6 tests/testthat/_snaps/brms-monotonic |only tests/testthat/_snaps/plot/collapse-random-effects-works-again.svg |only tests/testthat/_snaps/plot/colored-data-points-with-special-focal-terms.svg |only tests/testthat/_snaps/print_test_predictions-ordinal.md | 460 ++--- tests/testthat/_snaps/print_test_predictions.md | 774 +++++----- tests/testthat/_snaps/test_predictions-margin.md | 514 +++--- tests/testthat/_snaps/test_predictions_ggeffects.md | 390 ++--- tests/testthat/_snaps/windows |only tests/testthat/test-MCMCglmm.R | 2 tests/testthat/test-MixMod.R | 14 tests/testthat/test-brms-monotonic.R |only tests/testthat/test-brms-ppd.R | 18 tests/testthat/test-condition.R | 14 tests/testthat/test-coxph.R | 4 tests/testthat/test-emmeans-weights.R |only tests/testthat/test-focal_character.R |only tests/testthat/test-glmmTMB.R | 36 tests/testthat/test-lmer.R | 10 tests/testthat/test-nlme.R | 12 tests/testthat/test-percentile_at_values.R |only tests/testthat/test-plot.R | 49 tests/testthat/test-poly-zeroinf.R | 16 tests/testthat/test-print_test_predictions.R | 2 tests/testthat/test-print_zero_inflation.R |only tests/testthat/test-rstanarm-ppd.R | 18 tests/testthat/test-rstanarm.R | 16 tests/testthat/test-sdmTMB.R | 2 tests/testthat/test-test_predictions.R | 31 tests/testthat/test-test_predictions_ggeffects.R | 26 tests/testthat/test-vcov.R | 63 tests/testthat/test-zeroinfl.R | 70 vignettes/content.Rmd | 3 87 files changed, 2181 insertions(+), 1675 deletions(-)
Title: Estimation in Difference-in-Difference Designs with Multiple
Groups and Periods
Description: Estimation of event-study Difference-in-Difference (DID) estimators in designs with multiple groups and periods, and with a potentially non-binary treatment that may increase or decrease multiple times.
Author: Diego Ciccia [aut, cre],
Felix Knau [aut],
Melitine Malezieux [aut],
Doulo Sow [aut],
Clement de Chaisemartin [aut]
Maintainer: Diego Ciccia <diego.ciccia@sciencespo.fr>
Diff between DIDmultiplegtDYN versions 1.0.11 dated 2024-05-27 and 1.0.12 dated 2024-06-20
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/did_multiplegt_main.R | 27 +++++++++++++++++++++++---- 3 files changed, 28 insertions(+), 9 deletions(-)
More information about DIDmultiplegtDYN at CRAN
Permanent link
Title: Alternating Optimization
Description: Alternating optimization is an iterative procedure that optimizes
a function by alternately performing restricted optimization over individual
parameter subsets. Instead of tackling joint optimization directly, it
breaks the problem down into simpler sub-problems. This approach can make
optimization feasible when joint optimization is too difficult.
Author: Lennart Oelschlaeger [aut, cre]
,
Siddhartha Chib [ctb]
Maintainer: Lennart Oelschlaeger <oelschlaeger.lennart@gmail.com>
Diff between ao versions 0.3.3 dated 2024-02-29 and 1.0.0 dated 2024-06-20
DESCRIPTION | 31 + MD5 | 35 + NAMESPACE | 8 NEWS.md | 236 ++++++----- R/ao-package.R | 72 ++- R/ao.R | 561 +++++++++++++++------------- R/procedure.R |only README.md | 186 ++++----- build/vignette.rds |binary inst/doc/ao.R | 146 +++++++ inst/doc/ao.Rmd | 324 +++++++++++++++- inst/doc/ao.html | 595 ++++++++++++++++++++++++------ man/Procedure.Rd |only man/ao-package.Rd | 7 man/ao.Rd | 243 ++++++++---- man/ao_input_check.Rd |only tests/testthat/test-ao.R | 262 +++---------- tests/testthat/test-procedure.R |only vignettes/README-rosenbrock_ao_path-1.png |only vignettes/ao.Rmd | 324 +++++++++++++++- vignettes/ref.bib | 35 + 21 files changed, 2100 insertions(+), 965 deletions(-)
Title: Ready to Use Extra Datasets for Torch
Description: Provides datasets in a format that can be easily consumed by torch 'dataloaders'.
Handles data downloading from multiple sources, caching and pre-processing so
users can focus only on their model implementations.
Author: Daniel Falbel [aut, cre],
RStudio [cph]
Maintainer: Daniel Falbel <daniel@rstudio.com>
Diff between torchdatasets versions 0.3.0 dated 2023-02-14 and 0.3.1 dated 2024-06-20
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 2 ++ R/bird-species.R | 2 +- R/dogs-vs-cats.R | 2 +- R/guess-the-correlation.R | 2 +- R/oxford-flowers-dataset.R | 6 +++--- 7 files changed, 18 insertions(+), 16 deletions(-)
Title: Colored Terminal Output
Description: The crayon package is now superseded. Please use the 'cli'
package for new projects. Colored terminal output on terminals that
support 'ANSI' color and highlight codes. It also works in 'Emacs'
'ESS'. 'ANSI' color support is automatically detected. Colors and
highlighting can be combined and nested. New styles can also be
created easily. This package was inspired by the 'chalk' 'JavaScript'
project.
Author: Gabor Csardi [aut, cre],
Brodie Gaslam [ctb],
Posit Software, PBC [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between crayon versions 1.5.2 dated 2022-09-29 and 1.5.3 dated 2024-06-20
crayon-1.5.2/crayon/R/ansi-256.r |only crayon-1.5.2/crayon/R/combine.r |only crayon-1.5.2/crayon/R/crayon-package.r |only crayon-1.5.2/crayon/R/disposable.r |only crayon-1.5.2/crayon/R/has_ansi.r |only crayon-1.5.2/crayon/R/has_color.r |only crayon-1.5.2/crayon/R/machinery.r |only crayon-1.5.2/crayon/R/parts.r |only crayon-1.5.2/crayon/R/print.r |only crayon-1.5.2/crayon/R/show.r |only crayon-1.5.2/crayon/R/string.r |only crayon-1.5.2/crayon/R/string_operations.r |only crayon-1.5.2/crayon/R/style-var.r |only crayon-1.5.2/crayon/R/styles.r |only crayon-1.5.2/crayon/R/utils.r |only crayon-1.5.2/crayon/tests/testthat/test-color.r |only crayon-1.5.2/crayon/tests/testthat/test-has-style.r |only crayon-1.5.2/crayon/tests/testthat/test-make-style.r |only crayon-1.5.2/crayon/tests/testthat/test-style-var.r |only crayon-1.5.2/crayon/tests/testthat/test-styles.r |only crayon-1.5.2/crayon/tests/testthat/test-vectors.r |only crayon-1.5.3/crayon/DESCRIPTION | 50 +++++----- crayon-1.5.3/crayon/LICENSE | 4 crayon-1.5.3/crayon/MD5 | 92 +++++++++---------- crayon-1.5.3/crayon/NEWS.md | 10 ++ crayon-1.5.3/crayon/R/aab-num-ansi-colors.R | 5 + crayon-1.5.3/crayon/R/ansi-256.R |only crayon-1.5.3/crayon/R/combine.R |only crayon-1.5.3/crayon/R/crayon-package.R |only crayon-1.5.3/crayon/R/disposable.R |only crayon-1.5.3/crayon/R/has_ansi.R |only crayon-1.5.3/crayon/R/has_color.R |only crayon-1.5.3/crayon/R/machinery.R |only crayon-1.5.3/crayon/R/parts.R |only crayon-1.5.3/crayon/R/print.R |only crayon-1.5.3/crayon/R/show.R |only crayon-1.5.3/crayon/R/string.R |only crayon-1.5.3/crayon/R/string_operations.R |only crayon-1.5.3/crayon/R/style-var.R |only crayon-1.5.3/crayon/R/styles.R |only crayon-1.5.3/crayon/R/utils.R |only crayon-1.5.3/crayon/README.md | 13 ++ crayon-1.5.3/crayon/man/chr.Rd | 2 crayon-1.5.3/crayon/man/col_align.Rd | 6 - crayon-1.5.3/crayon/man/col_nchar.Rd | 6 - crayon-1.5.3/crayon/man/col_strsplit.Rd | 6 - crayon-1.5.3/crayon/man/col_substr.Rd | 2 crayon-1.5.3/crayon/man/col_substring.Rd | 2 crayon-1.5.3/crayon/man/combine_styles.Rd | 2 crayon-1.5.3/crayon/man/concat.Rd | 2 crayon-1.5.3/crayon/man/crayon.Rd | 21 ++++ crayon-1.5.3/crayon/man/drop_style.Rd | 2 crayon-1.5.3/crayon/man/has_color.Rd | 2 crayon-1.5.3/crayon/man/has_style.Rd | 2 crayon-1.5.3/crayon/man/make_style.Rd | 4 crayon-1.5.3/crayon/man/num_ansi_colors.Rd | 1 crayon-1.5.3/crayon/man/num_colors.Rd | 2 crayon-1.5.3/crayon/man/show_ansi_colors.Rd | 2 crayon-1.5.3/crayon/man/start.crayon.Rd | 2 crayon-1.5.3/crayon/man/strip_style.Rd | 2 crayon-1.5.3/crayon/man/style.Rd | 2 crayon-1.5.3/crayon/man/styles.Rd | 2 crayon-1.5.3/crayon/tests/testthat/test-color.R |only crayon-1.5.3/crayon/tests/testthat/test-has-style.R |only crayon-1.5.3/crayon/tests/testthat/test-make-style.R |only crayon-1.5.3/crayon/tests/testthat/test-style-var.R |only crayon-1.5.3/crayon/tests/testthat/test-styles.R |only crayon-1.5.3/crayon/tests/testthat/test-vectors.R |only 68 files changed, 144 insertions(+), 102 deletions(-)
Title: Datasets to Measure the Alignment of Corporate Loan Books with
Climate Goals
Description: These datasets support the implementation in R of the
software 'PACTA' (Paris Agreement Capital Transition Assessment),
which is a free tool that calculates the alignment between corporate
lending portfolios and climate scenarios
(<https://www.transitionmonitor.com/>). Financial institutions use
'PACTA' to study how their capital allocation decisions align with
climate change mitigation goals. Because both financial institutions
and market data providers keep their data private, this package
provides fake, public data to enable the development and use of
'PACTA' in R.
Author: Alex Axthelm [aut, cre, dtc] ,
Jackson Hoffart [aut, ctr, dtc]
,
Jacob Kastl [aut, ctr] ,
Mauro Lepore [aut, ctr] ,
Rocky Mountain Institute [cph, fnd]
Maintainer: Alex Axthelm <aaxthelm@rmi.org>
Diff between r2dii.data versions 0.5.0 dated 2024-03-25 and 0.6.0 dated 2024-06-20
r2dii.data-0.5.0/r2dii.data/data/cnb_classification.R |only r2dii.data-0.5.0/r2dii.data/man/cnb_classification.Rd |only r2dii.data-0.6.0/r2dii.data/DESCRIPTION | 9 + r2dii.data-0.6.0/r2dii.data/MD5 | 46 ++++------ r2dii.data-0.6.0/r2dii.data/NEWS.md | 8 + r2dii.data-0.6.0/r2dii.data/R/classification_bridge.R | 11 -- r2dii.data-0.6.0/r2dii.data/README.md | 26 ++--- r2dii.data-0.6.0/r2dii.data/data/abcd_demo.rda |binary r2dii.data-0.6.0/r2dii.data/data/data_dictionary.rda |binary r2dii.data-0.6.0/r2dii.data/data/loanbook_demo.rda |binary r2dii.data-0.6.0/r2dii.data/data/region_isos.rda |binary r2dii.data-0.6.0/r2dii.data/data/sector_classifications.rda |binary r2dii.data-0.6.0/r2dii.data/man/abcd_demo.Rd | 4 r2dii.data-0.6.0/r2dii.data/man/data_dictionary.Rd | 2 r2dii.data-0.6.0/r2dii.data/man/loanbook_demo.Rd | 4 r2dii.data-0.6.0/r2dii.data/man/r2dii.data-package.Rd | 1 r2dii.data-0.6.0/r2dii.data/man/region_isos.Rd | 2 r2dii.data-0.6.0/r2dii.data/man/sector_classifications.Rd | 2 r2dii.data-0.6.0/r2dii.data/tests/testthat/_snaps/abcd_demo.md | 20 +--- r2dii.data-0.6.0/r2dii.data/tests/testthat/_snaps/data_dictionary.md | 10 +- r2dii.data-0.6.0/r2dii.data/tests/testthat/_snaps/loanbook_demo.md | 32 ------ r2dii.data-0.6.0/r2dii.data/tests/testthat/_snaps/region_isos.md | 8 - r2dii.data-0.6.0/r2dii.data/tests/testthat/_snaps/sector_classifications.md | 10 +- r2dii.data-0.6.0/r2dii.data/tests/testthat/test-classification_bridge.R | 1 r2dii.data-0.6.0/r2dii.data/tests/testthat/test-region_isos.R | 5 - 25 files changed, 81 insertions(+), 120 deletions(-)
Title: Clinical Trial Style Data Readout Listings
Description: Listings are often part of the submission of clinical trial
data in regulatory settings. We provide a framework for the specific
formatting features often used when displaying large datasets in that
context.
Author: Gabriel Becker [aut] ,
Adrian Waddell [aut],
Joe Zhu [aut, cre],
Davide Garolini [ctb],
Emily de la Rua [ctb],
Abinaya Yogasekaram [ctb],
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Joe Zhu <joe.zhu@roche.com>
Diff between rlistings versions 0.2.8 dated 2024-04-15 and 0.2.9 dated 2024-06-20
DESCRIPTION | 14 ++++----- MD5 | 34 +++++++++++----------- NEWS.md | 5 +++ R/paginate_listing.R | 9 +++-- R/rlistings.R | 11 ++++--- R/rlistings_methods.R | 50 +++++++++++++++++++-------------- inst/WORDLIST | 3 + inst/doc/col_formatting.html | 4 +- inst/doc/pagination.html | 4 +- inst/doc/ref_footnotes.html | 4 +- man/listing_methods.Rd | 19 ++++++++++-- man/make_row_df-listing_df-method.Rd | 6 +++ man/matrix_form-listing_df-method.Rd | 16 +++++++++- man/paginate.Rd | 8 +++++ man/vec_nlines.Rd | 4 +- tests/testthat/setup.R | 18 +++++++++++ tests/testthat/test-matrix_form.R | 4 +- tests/testthat/test-paginate_listing.R | 14 +++++---- 18 files changed, 153 insertions(+), 74 deletions(-)
Title: Fitting the Multinomial Probit Model
Description: Fits the Bayesian multinomial probit model via Markov chain
Monte Carlo. The multinomial probit model is often used to analyze
the discrete choices made by individuals recorded in survey data.
Examples where the multinomial probit model may be useful include the
analysis of product choice by consumers in market research and the
analysis of candidate or party choice by voters in electoral studies.
The MNP package can also fit the model with different choice sets for
each individual, and complete or partial individual choice orderings
of the available alternatives from the choice set. The estimation is
based on the efficient marginal data augmentation algorithm that is
developed by Imai and van Dyk (2005). "A Bayesian Analysis of the
Multinomial Probit Model Using the Data Augmentation." Journal of
Econometrics, Vol. 124, No. 2 (February), pp. 311-334.
<doi:10.1016/j.jeconom.2004.02.002> Detailed examples are given in
Imai and van Dyk (2005). "MNP: R Package for Fitting the Multi [...truncated...]
Author: Kosuke Imai [aut, cre],
David van Dyk [aut],
Hubert Jin [ctb]
Maintainer: Kosuke Imai <imai@harvard.edu>
Diff between MNP versions 3.1-4 dated 2023-03-14 and 3.1-5 dated 2024-06-20
ChangeLog | 1 + DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- build/vignette.rds |binary inst/doc/MNP.pdf |binary tests/testthat/test-all.R | 9 ++++----- 6 files changed, 14 insertions(+), 14 deletions(-)
Title: The 'jamovi' Analyses
Description: A suite of common statistical methods such as descriptives,
t-tests, ANOVAs, regression, correlation matrices, proportion tests,
contingency tables, and factor analysis. This package is also useable from
the 'jamovi' statistical spreadsheet (see <https://www.jamovi.org> for more
information).
Author: Ravi Selker [aut, cph],
Jonathon Love [aut, cre, cph],
Damian Dropmann [aut, cph],
Victor Moreno [ctb, cph],
Maurizio Agosti [ctb, cph]
Maintainer: Jonathon Love <jon@thon.cc>
Diff between jmv versions 2.5.5 dated 2024-05-31 and 2.5.6 dated 2024-06-20
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- R/errors.R | 2 +- R/linreg.b.R | 15 +++++++++++++++ R/logregbin.b.R | 15 +++++++++++++++ R/logregmulti.b.R | 15 +++++++++++++++ R/logregord.b.R | 14 ++++++++++++++ tests/testthat/testlinreg.R | 15 +++++++++++++++ tests/testthat/testlogregbin.R | 17 +++++++++++++++++ tests/testthat/testlogregmulti.R | 18 ++++++++++++++++++ tests/testthat/testlogregord.R | 20 ++++++++++++++++++++ tests/testthat/testttestis.R | 14 -------------- 12 files changed, 145 insertions(+), 30 deletions(-)
Title: Analyses of Evolutionary Time-Series
Description: Facilitates univariate and multivariate analysis of evolutionary sequences of phenotypic change. The package extends the modeling framework available in the 'paleoTS' package. Please see <https://klvoje.github.io/evoTS/index.html> for information about the package and the implemented models.
Author: Kjetil Lysne Voje [aut, cre]
Maintainer: Kjetil Lysne Voje <k.l.voje@nhm.uio.no>
Diff between evoTS versions 1.0.2 dated 2023-03-06 and 1.0.3 dated 2024-06-20
DESCRIPTION | 8 ++--- MD5 | 44 ++++++++++++++++---------------- NEWS.md | 7 ++++- R/as.evoTS.BM.acceldecel.multi.fit.R | 2 - R/as.evoTS.BM.multi.fit.R | 2 - R/as.evoTS.multi.OU.fit.R | 8 +++-- R/as.evoTS.multi.URW.fit.R | 2 - R/as.evoTS.multi.URW.shift.fit.R | 2 - R/as.evoTSfit.OUBM.R | 6 +--- R/fit.all.univariate.R | 17 ++---------- R/fit.mode.shift.R | 2 - R/fit.multivariate.OU.R | 48 +++++++++++++++++++++++++++-------- R/fit.multivariate.OU.user.defined.R | 6 ++-- R/fit.multivariate.URW.shift.R | 31 ++++++++++++++-------- R/opt.accel.single.R | 2 - R/opt.accel.single.R.zero.corr.R | 2 - R/opt.decel.single.R | 2 - R/opt.decel.single.R.zero.corr.R | 2 - R/opt.joint.OUBM.R | 4 ++ R/opt.single.R | 2 - R/opt.single.R.zero.corr.R | 2 - man/as.evoTS.multi.OU.fit.Rd | 3 ++ man/as.evoTSfit.OUBM.Rd | 4 -- 23 files changed, 123 insertions(+), 85 deletions(-)
Title: Swarm Intelligence for Self-Organized Clustering
Description: Algorithms implementing populations of agents that interact with one another and sense their environment may exhibit emergent behavior such as self-organization and swarm intelligence. Here, a swarm system called Databionic swarm (DBS) is introduced which was published in Thrun, M.C., Ultsch A.: "Swarm Intelligence for Self-Organized Clustering" (2020), Artificial Intelligence, <DOI:10.1016/j.artint.2020.103237>. DBS is able to adapt itself to structures of high-dimensional data such as natural clusters characterized by distance and/or density based structures in the data space. The first module is the parameter-free projection method called Pswarm (Pswarm()), which exploits the concepts of self-organization and emergence, game theory, swarm intelligence and symmetry considerations. The second module is the parameter-free high-dimensional data visualization technique, which generates projected points on the topographic map with hypsometric tints defined by the generalized U-matri [...truncated...]
Author: Michael Thrun [aut, cre, cph] ,
Quirin Stier [aut, rev]
Maintainer: Michael Thrun <m.thrun@gmx.net>
Diff between DatabionicSwarm versions 1.2.1 dated 2023-10-13 and 2.0.0 dated 2024-06-20
DatabionicSwarm-1.2.1/DatabionicSwarm/R/ClusteringAccuracy.R |only DatabionicSwarm-1.2.1/DatabionicSwarm/man/PswarmCurrentRadiusC2botsPositive.Rd |only DatabionicSwarm-1.2.1/DatabionicSwarm/src/DataBionicSwarm.h |only DatabionicSwarm-1.2.1/DatabionicSwarm/src/DatabionicSwarm_init.c |only DatabionicSwarm-1.2.1/DatabionicSwarm/src/PswarmCurrentRadiusC2botsPositive.cpp |only DatabionicSwarm-1.2.1/DatabionicSwarm/src/calcPolarPositionsC.cpp |only DatabionicSwarm-1.2.1/DatabionicSwarm/src/calcPolarPositionsC.h |only DatabionicSwarm-1.2.1/DatabionicSwarm/src/calcStressC.cpp |only DatabionicSwarm-1.2.1/DatabionicSwarm/src/calcStressC.h |only DatabionicSwarm-1.2.1/DatabionicSwarm/src/lmC.cpp |only DatabionicSwarm-1.2.1/DatabionicSwarm/src/lmC.h |only DatabionicSwarm-1.2.1/DatabionicSwarm/src/makePolarPositionToroidC.cpp |only DatabionicSwarm-1.2.1/DatabionicSwarm/src/makePolarPositionToroidC.h |only DatabionicSwarm-2.0.0/DatabionicSwarm/DESCRIPTION | 16 DatabionicSwarm-2.0.0/DatabionicSwarm/MD5 | 131 +- DatabionicSwarm-2.0.0/DatabionicSwarm/NAMESPACE | 16 DatabionicSwarm-2.0.0/DatabionicSwarm/R/DBSclustering.R | 6 DatabionicSwarm-2.0.0/DatabionicSwarm/R/Delaunay4Points.R | 62 - DatabionicSwarm-2.0.0/DatabionicSwarm/R/GeneratePmatrix.R |only DatabionicSwarm-2.0.0/DatabionicSwarm/R/GeneratePswarmVisualization.R | 362 +++--- DatabionicSwarm-2.0.0/DatabionicSwarm/R/ProjectedPoints2Grid.R | 344 +++--- DatabionicSwarm-2.0.0/DatabionicSwarm/R/Pswarm.R | 551 +++++----- DatabionicSwarm-2.0.0/DatabionicSwarm/R/PswarmEpochsParallel.R |only DatabionicSwarm-2.0.0/DatabionicSwarm/R/PswarmEpochsSequential.R |only DatabionicSwarm-2.0.0/DatabionicSwarm/R/RcppExports.R | 24 DatabionicSwarm-2.0.0/DatabionicSwarm/R/RelativeDifference.R | 2 DatabionicSwarm-2.0.0/DatabionicSwarm/R/RobustNorm_BackTrafo.R |only DatabionicSwarm-2.0.0/DatabionicSwarm/R/RobustNormalization.R |only DatabionicSwarm-2.0.0/DatabionicSwarm/R/ShortestGraphPathsC.R | 5 DatabionicSwarm-2.0.0/DatabionicSwarm/R/UniquePoints.R | 98 - DatabionicSwarm-2.0.0/DatabionicSwarm/R/assertCorrectDataDrivenApproach.R |only DatabionicSwarm-2.0.0/DatabionicSwarm/R/calcGabrielGraph2D.R | 8 DatabionicSwarm-2.0.0/DatabionicSwarm/R/getCartesianCoordinates.R | 19 DatabionicSwarm-2.0.0/DatabionicSwarm/R/sESOM4BMUs.R | 218 +-- DatabionicSwarm-2.0.0/DatabionicSwarm/R/setGridSize.R | 104 + DatabionicSwarm-2.0.0/DatabionicSwarm/R/setPolarGrid.R | 214 ++- DatabionicSwarm-2.0.0/DatabionicSwarm/build/partial.rdb |binary DatabionicSwarm-2.0.0/DatabionicSwarm/build/vignette.rds |binary DatabionicSwarm-2.0.0/DatabionicSwarm/inst/CITATION | 2 DatabionicSwarm-2.0.0/DatabionicSwarm/inst/NEWS | 11 DatabionicSwarm-2.0.0/DatabionicSwarm/inst/doc/DatabionicSwarm.Rmd | 2 DatabionicSwarm-2.0.0/DatabionicSwarm/inst/doc/DatabionicSwarm.html | 79 + DatabionicSwarm-2.0.0/DatabionicSwarm/man/DBSclustering.Rd | 35 DatabionicSwarm-2.0.0/DatabionicSwarm/man/DatabionicSwarm-package.Rd | 8 DatabionicSwarm-2.0.0/DatabionicSwarm/man/Delaunay4Points.Rd | 31 DatabionicSwarm-2.0.0/DatabionicSwarm/man/Delta3DWeightsC.Rd | 26 DatabionicSwarm-2.0.0/DatabionicSwarm/man/DijkstraSSSP.Rd | 22 DatabionicSwarm-2.0.0/DatabionicSwarm/man/GeneratePswarmVisualization.Rd | 133 -- DatabionicSwarm-2.0.0/DatabionicSwarm/man/ProjectedPoints2Grid.Rd | 7 DatabionicSwarm-2.0.0/DatabionicSwarm/man/Pswarm.Rd | 151 +- DatabionicSwarm-2.0.0/DatabionicSwarm/man/PswarmEpochsParallel.Rd |only DatabionicSwarm-2.0.0/DatabionicSwarm/man/PswarmEpochsSequential.Rd |only DatabionicSwarm-2.0.0/DatabionicSwarm/man/PswarmRadiusParallel.Rd |only DatabionicSwarm-2.0.0/DatabionicSwarm/man/PswarmRadiusSequential.Rd |only DatabionicSwarm-2.0.0/DatabionicSwarm/man/RobustNorm_BackTrafo.Rd |only DatabionicSwarm-2.0.0/DatabionicSwarm/man/RobustNormalization.Rd |only DatabionicSwarm-2.0.0/DatabionicSwarm/man/ShortestGraphPathsC.Rd | 36 DatabionicSwarm-2.0.0/DatabionicSwarm/man/UniquePoints.Rd | 54 DatabionicSwarm-2.0.0/DatabionicSwarm/man/findPossiblePositionsCsingle.Rd | 12 DatabionicSwarm-2.0.0/DatabionicSwarm/man/getCartesianCoordinates.Rd | 39 DatabionicSwarm-2.0.0/DatabionicSwarm/man/getUmatrix4Projection.Rd | 57 - DatabionicSwarm-2.0.0/DatabionicSwarm/man/plotSwarm.rd | 7 DatabionicSwarm-2.0.0/DatabionicSwarm/man/rDistanceToroidCsingle.Rd | 22 DatabionicSwarm-2.0.0/DatabionicSwarm/man/sESOM4BMUs.Rd | 7 DatabionicSwarm-2.0.0/DatabionicSwarm/man/setGridSize.Rd | 25 DatabionicSwarm-2.0.0/DatabionicSwarm/man/setPolarGrid.Rd | 31 DatabionicSwarm-2.0.0/DatabionicSwarm/man/setRmin.Rd | 17 DatabionicSwarm-2.0.0/DatabionicSwarm/man/trainstepC.Rd | 37 DatabionicSwarm-2.0.0/DatabionicSwarm/man/trainstepC2.Rd |only DatabionicSwarm-2.0.0/DatabionicSwarm/src/DijkstraSSSP.cpp | 47 DatabionicSwarm-2.0.0/DatabionicSwarm/src/Makevars | 22 DatabionicSwarm-2.0.0/DatabionicSwarm/src/Makevars.win | 23 DatabionicSwarm-2.0.0/DatabionicSwarm/src/PswarmRadiusParallel.cpp |only DatabionicSwarm-2.0.0/DatabionicSwarm/src/PswarmRadiusSequential.cpp |only DatabionicSwarm-2.0.0/DatabionicSwarm/src/RcppExports.cpp | 100 + DatabionicSwarm-2.0.0/DatabionicSwarm/src/findPossiblePositionsCsingle.cpp | 4 DatabionicSwarm-2.0.0/DatabionicSwarm/src/rcppPar_DistanceToroid.cpp |only DatabionicSwarm-2.0.0/DatabionicSwarm/src/sampleC.cpp |only DatabionicSwarm-2.0.0/DatabionicSwarm/src/sampleC.h |only DatabionicSwarm-2.0.0/DatabionicSwarm/src/trainstepC.cpp | 89 + DatabionicSwarm-2.0.0/DatabionicSwarm/src/trainstepC2.cpp | 40 DatabionicSwarm-2.0.0/DatabionicSwarm/vignettes/DatabionicSwarm.Rmd | 2 82 files changed, 1789 insertions(+), 1569 deletions(-)
More information about DatabionicSwarm at CRAN
Permanent link
Title: Bayesian Analysis of the Network Autocorrelation Model
Description: The network autocorrelation model (NAM) can be used for studying the degree of social influence
regarding an outcome variable based on one or more known networks.
The degree of social influence is quantified via the network autocorrelation parameters. In case of a single
network, the Bayesian methods of Dittrich, Leenders, and Mulder
(2017) <DOI:10.1016/j.socnet.2016.09.002> and Dittrich, Leenders, and Mulder (2019)
<DOI:10.1177/0049124117729712> are implemented using a normal, flat, or independence
Jeffreys prior for the network autocorrelation. In the case of multiple
networks, the Bayesian methods of Dittrich, Leenders, and Mulder (2020)
<DOI:10.1177/0081175020913899> are implemented using a multivariate normal prior for
the network autocorrelation parameters. Flat priors are implemented
for estimating the coefficients. For Bayesian testing of equality and order-constrained
hypotheses, the default Bayes factor of Gu, Mulder, and Hoijtink, (2018)
<DOI:10.1111/bms [...truncated...]
Author: Joris Mulder [aut, cre],
Dino Dittrich [aut, ctb],
Roger Leenders [aut, ctb]
Maintainer: Joris Mulder <j.mulder3@tilburguniversity.edu>
Diff between BANAM versions 0.2.0 dated 2024-05-29 and 0.2.1 dated 2024-06-20
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/MargLikeNAM.R | 12 ++++++------ 3 files changed, 12 insertions(+), 12 deletions(-)
Title: Implementation of Remez Algorithm for Polynomial and Rational
Function Approximation
Description: Implements the algorithm of Remez (1962) for polynomial minimax
approximation and of Cody et al. (1968) <doi:10.1007/BF02162506> for
rational minimax approximation.
Author: Avraham Adler [aut, cre, cph]
Maintainer: Avraham Adler <Avraham.Adler@gmail.com>
Diff between minimaxApprox versions 0.4.2 dated 2024-05-20 and 0.4.3 dated 2024-06-20
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- README.md | 3 +-- build/partial.rdb |binary inst/CITATION | 4 ++-- inst/NEWS.Rd | 10 ++++++++++ inst/tinytest/test_package_metadata.R | 26 +++++++++++++++++++------- src/Chebyshev.c | 7 ++++++- 8 files changed, 49 insertions(+), 23 deletions(-)
Title: Robust Estimation in Very Small Samples
Description: Implements the estimation techniques described in Rousseeuw &
Verboven (2002) <doi:10.1016/S0167-9473(02)00078-6> for the location and
scale of very small samples.
Author: Avraham Adler [aut, cph, cre]
Maintainer: Avraham Adler <Avraham.Adler@gmail.com>
Diff between revss versions 1.0.6 dated 2024-02-01 and 2.0.0 dated 2024-06-20
revss-1.0.6/revss/inst/tinytest/test_1version.R |only revss-1.0.6/revss/inst/tinytest/test_2revss.R |only revss-2.0.0/revss/DESCRIPTION | 8 +-- revss-2.0.0/revss/MD5 | 18 +++---- revss-2.0.0/revss/R/robScale.R | 3 - revss-2.0.0/revss/README.md | 7 +-- revss-2.0.0/revss/build/partial.rdb |binary revss-2.0.0/revss/inst/CITATION | 4 - revss-2.0.0/revss/inst/NEWS.Rd | 37 ++++++++++++---- revss-2.0.0/revss/inst/tinytest/test_package_metadata.R |only revss-2.0.0/revss/inst/tinytest/test_revss.R |only revss-2.0.0/revss/man/robScale.Rd | 7 +-- 12 files changed, 54 insertions(+), 30 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-07-13 0.3.0
2019-10-03 0.1.0
Title: Processing of Model Parameters
Description: Utilities for processing the parameters of various
statistical models. Beyond computing p values, CIs, and other indices
for a wide variety of models (see list of supported models using the
function 'insight::supported_models()'), this package implements
features like bootstrapping or simulating of parameters and models,
feature reduction (feature extraction and variable selection) as well
as functions to describe data and variable characteristics (e.g.
skewness, kurtosis, smoothness or distribution).
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut] ,
Mattan S. Ben-Shachar [aut] ,
Indrajeet Patil [aut] ,
Soeren Hoejsgaard [aut],
Brenton M. Wiernik [aut] ,
Zen J. Lau [ctb],
Vincent Arel-Bundock [ctb] ,
Jeffrey Girard [ctb] ,
Christina Maimone [re [...truncated...]
Maintainer: Daniel Luedecke <d.luedecke@uke.de>
Diff between parameters versions 0.21.7 dated 2024-05-14 and 0.22.0 dated 2024-06-20
DESCRIPTION | 19 - MD5 | 111 +++++----- NAMESPACE | 3 NEWS.md | 23 ++ R/1_model_parameters.R | 2 R/bootstrap_model.R | 6 R/display.R | 14 - R/dof_kenward.R | 2 R/equivalence_test.R | 78 +------ R/extract_parameters.R | 8 R/extract_parameters_anova.R | 17 + R/format.R | 5 R/methods_BayesFactor.R | 61 ++--- R/methods_DirichletReg.R | 30 +- R/methods_aov.R | 86 +++---- R/methods_glmgee.R |only R/methods_htest.R | 207 +++++++++---------- R/methods_kmeans.R | 8 R/methods_other.R | 11 - R/methods_rstanarm.R | 2 R/n_clusters_easystats.R | 106 +++++---- R/principal_components.R | 106 +++++---- R/print.compare_parameters.R | 32 ++ R/print.parameters_model.R | 11 - R/print_html.R | 3 R/print_md.R | 9 R/select_parameters.R | 46 ++-- R/standardize_info.R | 30 +- R/standardize_parameters.R | 16 - R/standardize_posteriors.R | 2 R/utils_pca_efa.R | 11 - build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 2 man/display.parameters_model.Rd | 99 --------- man/model_parameters.BFBayesFactor.Rd | 45 ++-- man/model_parameters.Rd | 2 man/model_parameters.aov.Rd | 20 - man/model_parameters.cgam.Rd | 7 man/model_parameters.htest.Rd | 26 -- man/parameters-package.Rd | 2 man/principal_components.Rd | 17 + man/print.compare_parameters.Rd |only man/print.parameters_model.Rd | 145 ++++++++++--- man/select_parameters.Rd | 45 +--- man/standardize_parameters.Rd | 7 tests/testthat/_snaps/pca.md |only tests/testthat/test-marginaleffects.R | 10 tests/testthat/test-model_parameters.BFBayesFactor.R | 4 tests/testthat/test-model_parameters.anova.R | 2 tests/testthat/test-model_parameters.aov.R | 10 tests/testthat/test-model_parameters.aov_es_ci.R | 29 +- tests/testthat/test-model_parameters.blmerMod.R | 10 tests/testthat/test-model_parameters.fixest.R | 2 tests/testthat/test-model_parameters.htest.R | 56 +++-- tests/testthat/test-model_parameters.mixed.R | 2 tests/testthat/test-pca.R | 17 + tests/testthat/test-standardize_parameters.R | 52 ++-- 58 files changed, 898 insertions(+), 778 deletions(-)
Title: Metagenomic Clustering
Description: Clustering in metagenomics is the process of grouping of microbial contigs in species specific bins. This package contains functions that extract genomic features from metagenome data, find the number of clusters for that given data and find the best clustering algorithm for binning.
Author: Dipro Sinha [aut, cre],
Sayanti Guha Majumdar [aut],
Anu Sharma [aut],
Dwijesh Chandra Mishra [aut],
Md Yeasin [aut]
Maintainer: Dipro Sinha <diprosinha@gmail.com>
Diff between metaCluster versions 0.1.0 dated 2021-09-30 and 0.1.1 dated 2024-06-20
DESCRIPTION | 23 ++++++++++++----------- MD5 | 2 +- 2 files changed, 13 insertions(+), 12 deletions(-)
Title: A Fast and Flexible Group Elastic Net Solver
Description: R bindings for the Python package 'adelie'.
These bindings offer a general purpose group elastic net solver,
a wide range of matrix classes that can exploit special structure
to allow large-scale inputs, and an assortment of
generalized linear model classes for fitting various types of data.
The package is an implementation of Yang, J. and Hastie, T. (2024) <doi:10.48550/arXiv.2405.08631>.
Author: James Yang [aut, cre, cph],
Trevor Hastie [aut, cph, fnd],
Balasubramanian Narasimhan [aut]
Maintainer: James Yang <jamesyang916@gmail.com>
Diff between adelie versions 1.0.0 dated 2024-06-17 and 1.0.1 dated 2024-06-20
DESCRIPTION | 8 MD5 | 41 +- NAMESPACE | 1 NEWS.md | 7 R/glm.R | 1 R/solver.R | 189 +++++++++- R/state.R | 117 +++++- inst/adelie/adelie/__init__.py | 2 inst/adelie/adelie/glm.py | 2 inst/adelie/adelie/solver.py | 4 inst/adelie/adelie/src/include/adelie_core/io/io_snp_base.hpp | 4 inst/adelie/adelie/src/include/adelie_core/io/io_snp_phased_ancestry.hpp | 155 ++++---- inst/adelie/adelie/src/include/adelie_core/io/io_snp_unphased.hpp | 170 +++++--- inst/adelie/adelie/state.py | 20 - man/gaussian_cov.Rd |only man/grpnet.Rd | 2 src/rcpp_matrix.cpp | 2 src/rcpp_matrix.h | 17 src/rcpp_solver.cpp | 42 ++ src/rcpp_state.cpp | 72 +++ src/rcpp_state.h | 16 tests/testthat/test_solver.R | 11 22 files changed, 695 insertions(+), 188 deletions(-)