Title: Get Executing Script's Path
Description: Determine the path of the executing script. Compatible
with a few popular GUIs: 'Rgui', 'RStudio', 'VSCode',
'Jupyter', 'Emacs', and 'Rscript' (shell). Compatible with
several functions and packages: 'source()', 'sys.source()',
'debugSource()' in 'RStudio', 'compiler::loadcmp()',
'utils::Sweave()', 'box::use()', 'knitr::knit()',
'plumber::plumb()', 'shiny::runApp()', 'package:targets', and
'testthat::source_file()'.
Author: Iris Simmons
Maintainer: Iris Simmons <ikwsimmo@gmail.com>
Diff between this.path versions 2.4.0 dated 2024-02-16 and 2.5.0 dated 2024-06-29
this.path-2.4.0/this.path/inst/extdata/r-editor_msvcrt.txt |only this.path-2.4.0/this.path/inst/extdata/r-editor_ucrt.txt |only this.path-2.4.0/this.path/inst/extdata/untitled_msvcrt.txt |only this.path-2.4.0/this.path/inst/extdata/untitled_ucrt.txt |only this.path-2.5.0/this.path/DESCRIPTION | 11 this.path-2.5.0/this.path/LICENSE | 2 this.path-2.5.0/this.path/MD5 | 153 - this.path-2.5.0/this.path/NAMESPACE | 9 this.path-2.5.0/this.path/NEWS | 16 this.path-2.5.0/this.path/R/backports.R | 21 this.path-2.5.0/this.path/R/defunct.R | 27 this.path-2.5.0/this.path/R/files.R | 9 this.path-2.5.0/this.path/R/ns-hooks.R | 31 this.path-2.5.0/this.path/R/pathfuns.R | 74 this.path-2.5.0/this.path/R/progargs.R | 11 this.path-2.5.0/this.path/R/promises.R | 51 this.path-2.5.0/this.path/R/thispath.R | 95 this.path-2.5.0/this.path/R/zzz.R | 6 this.path-2.5.0/this.path/README.md | 30 this.path-2.5.0/this.path/build/stage23.rdb |binary this.path-2.5.0/this.path/build/this.path.pdf |binary this.path-2.5.0/this.path/configure.win | 2 this.path-2.5.0/this.path/inst/NEWS.in.Rd | 18 this.path-2.5.0/this.path/inst/extdata/README | 12 this.path-2.5.0/this.path/inst/extdata/main.R | 646 +++- this.path-2.5.0/this.path/inst/extdata/r-editor_msvcrt_2_15.dat |only this.path-2.5.0/this.path/inst/extdata/r-editor_msvcrt_3_0.dat |only this.path-2.5.0/this.path/inst/extdata/r-editor_msvcrt_3_4.dat |only this.path-2.5.0/this.path/inst/extdata/r-editor_msvcrt_4_1.dat |only this.path-2.5.0/this.path/inst/extdata/r-editor_ucrt_4_2.dat |only this.path-2.5.0/this.path/inst/extdata/r-editor_ucrt_4_4.dat |only this.path-2.5.0/this.path/inst/extdata/untitled_msvcrt_2_15.dat |only this.path-2.5.0/this.path/inst/extdata/untitled_msvcrt_3_0.dat |only this.path-2.5.0/this.path/inst/extdata/untitled_msvcrt_3_4.dat |only this.path-2.5.0/this.path/inst/extdata/untitled_msvcrt_4_1.dat |only this.path-2.5.0/this.path/inst/extdata/untitled_ucrt_4_2.dat |only this.path-2.5.0/this.path/inst/extdata/untitled_ucrt_4_4.dat |only this.path-2.5.0/this.path/man/OS.type.Rd | 52 this.path-2.5.0/this.path/man/R.from.shell.Rd | 35 this.path-2.5.0/this.path/man/ext.Rd | 4 this.path-2.5.0/this.path/man/path.functions.Rd | 35 this.path-2.5.0/this.path/man/progArgs.Rd | 26 this.path-2.5.0/this.path/man/set.sys.path.Rd | 13 this.path-2.5.0/this.path/man/this.path-defunct.Rd | 10 this.path-2.5.0/this.path/man/this.path.Rd | 157 - this.path-2.5.0/this.path/src/0.c | 29 this.path-2.5.0/this.path/src/aquarootscript.c | 2 this.path-2.5.0/this.path/src/backports.c | 467 ++- this.path-2.5.0/this.path/src/backports.h | 85 this.path-2.5.0/this.path/src/basename2.c | 48 this.path-2.5.0/this.path/src/devel.h | 70 this.path-2.5.0/this.path/src/error.c | 353 +- this.path-2.5.0/this.path/src/error.h | 8 this.path-2.5.0/this.path/src/ext.c | 138 this.path-2.5.0/this.path/src/files.c | 26 this.path-2.5.0/this.path/src/files.h | 2 this.path-2.5.0/this.path/src/get_file_from_closure.h | 39 this.path-2.5.0/this.path/src/ns-hooks.c | 645 ++-- this.path-2.5.0/this.path/src/ns-hooks.h | 4 this.path-2.5.0/this.path/src/pathjoin.c | 92 this.path-2.5.0/this.path/src/pathsplit.c | 125 this.path-2.5.0/this.path/src/print.c | 182 - this.path-2.5.0/this.path/src/print.h | 1 this.path-2.5.0/this.path/src/progargs.c | 33 this.path-2.5.0/this.path/src/promises.c | 301 -- this.path-2.5.0/this.path/src/promises.h | 1 this.path-2.5.0/this.path/src/rgui_path.c | 77 this.path-2.5.0/this.path/src/rprojroot.c | 11 this.path-2.5.0/this.path/src/rversiondefines.h | 1 this.path-2.5.0/this.path/src/setsyspath.c | 397 +- this.path-2.5.0/this.path/src/shfile.c | 100 this.path-2.5.0/this.path/src/startup.c | 73 this.path-2.5.0/this.path/src/symbols.h | 384 +- this.path-2.5.0/this.path/src/sys.c | 70 this.path-2.5.0/this.path/src/sys.h | 3 this.path-2.5.0/this.path/src/this.path.h | 21 this.path-2.5.0/this.path/src/thispath.c | 1385 ++++------ this.path-2.5.0/this.path/src/thispathdefn.c | 263 + this.path-2.5.0/this.path/src/thispathdefn.h | 200 - this.path-2.5.0/this.path/src/translations.h | 2 this.path-2.5.0/this.path/src/utils.c | 20 this.path-2.5.0/this.path/tests/ext-tests.R | 8 this.path-2.5.0/this.path/tests/this-path-tests.R | 269 + this.path-2.5.0/this.path/tools/configure.R | 132 this.path-2.5.0/this.path/tools/info.dcf | 1 this.path-2.5.0/this.path/tools/this_path_reg_ptrs.c |only 86 files changed, 4113 insertions(+), 3511 deletions(-)
Title: Excess Hazard Modelling Considering Inappropriate Mortality
Rates
Description: Fits relative survival regression models with or without proportional excess hazards and with the additional possibility to correct for background mortality by one or more parameter(s). These models are relevant when the observed mortality in the studied group is not comparable to that of the general population or in population-based studies where the available life tables used for net survival estimation are insufficiently stratified. In the latter case, the proposed model by Touraine et al. (2020) <doi:10.1177/0962280218823234> can be used. The user can also fit a model that relaxes the proportional expected hazards assumption considered in the Touraine et al. excess hazard model. This extension was proposed by Mba et al. (2020) <doi:10.1186/s12874-020-01139-z> to allow non-proportional effects of the additional variable on the general population mortality. In non-population-based studies, researchers can identify non-comparability source of bias in terms of expected mort [...truncated...]
Author: Juste Goungounga [aut, cre] ,
Hadrien Charvat [aut] ,
Darlin Mba [aut] ,
Nathalie Graffeo [aut] ,
Roch Giorgi [aut]
Maintainer: Juste Goungounga <juste.goungounga@ehesp.fr>
Diff between xhaz versions 2.0.1 dated 2022-09-19 and 2.0.2 dated 2024-06-29
xhaz-2.0.1/xhaz/R/cumpop.R |only xhaz-2.0.1/xhaz/vignettes/README_files |only xhaz-2.0.2/xhaz/DESCRIPTION | 36 xhaz-2.0.2/xhaz/MD5 | 154 - xhaz-2.0.2/xhaz/NAMESPACE | 5 xhaz-2.0.2/xhaz/R/AIC.bsplines.R | 6 xhaz-2.0.2/xhaz/R/AIC.constant.R | 6 xhaz-2.0.2/xhaz/R/AIC.mexhazLT.R |only xhaz-2.0.2/xhaz/R/BIC.bsplines.R | 9 xhaz-2.0.2/xhaz/R/BIC.constant.R | 9 xhaz-2.0.2/xhaz/R/BIC.mexhazLT.R |only xhaz-2.0.2/xhaz/R/CumPop.R |only xhaz-2.0.2/xhaz/R/anova.bsplines.R | 14 xhaz-2.0.2/xhaz/R/anova.constant.R | 8 xhaz-2.0.2/xhaz/R/anova.mexhazLT.R |only xhaz-2.0.2/xhaz/R/breakpoint_with_cut.R | 4 xhaz-2.0.2/xhaz/R/breast.R |only xhaz-2.0.2/xhaz/R/ccr.mevents.R |only xhaz-2.0.2/xhaz/R/classical_functions.R | 36 xhaz-2.0.2/xhaz/R/dataCancer.R | 6 xhaz-2.0.2/xhaz/R/duplicate.R | 53 xhaz-2.0.2/xhaz/R/esteve_ph_fit_function.R | 17 xhaz-2.0.2/xhaz/R/esteve_ph_optim_maxim_function.R | 19 xhaz-2.0.2/xhaz/R/exphaz.R | 48 xhaz-2.0.2/xhaz/R/exphaz_years.R | 180 - xhaz-2.0.2/xhaz/R/formulaLT.R |only xhaz-2.0.2/xhaz/R/giorgi.tdph.fit.R | 22 xhaz-2.0.2/xhaz/R/giorgi.tdph.maxim.R | 729 ++++-- xhaz-2.0.2/xhaz/R/giorgi.tdph.optim.maxim.R | 1273 ++++++----- xhaz-2.0.2/xhaz/R/mexhazLT.R |only xhaz-2.0.2/xhaz/R/plot.bsplines.R | 8 xhaz-2.0.2/xhaz/R/plot.predxhaz.R | 11 xhaz-2.0.2/xhaz/R/predict.xhaz.bsplines.R | 8 xhaz-2.0.2/xhaz/R/predict.xhaz.constant.R | 8 xhaz-2.0.2/xhaz/R/print.xhaz.bsplines.R | 6 xhaz-2.0.2/xhaz/R/print.xhaz.constant.R | 175 - xhaz-2.0.2/xhaz/R/rescaledData.R | 2 xhaz-2.0.2/xhaz/R/simuData.R | 4 xhaz-2.0.2/xhaz/R/summary.xhaz.bsplines.R | 6 xhaz-2.0.2/xhaz/R/summary.xhaz.constant.R | 108 xhaz-2.0.2/xhaz/R/testM.R | 6 xhaz-2.0.2/xhaz/R/to_rescale.R |only xhaz-2.0.2/xhaz/R/tosplit.R | 5 xhaz-2.0.2/xhaz/R/without_breakpoint_without_cut.R | 112 xhaz-2.0.2/xhaz/R/xhaz-package.R | 97 xhaz-2.0.2/xhaz/R/xhaz.R | 15 xhaz-2.0.2/xhaz/R/xhaz2.R | 82 xhaz-2.0.2/xhaz/R/xhaz_split.R | 6 xhaz-2.0.2/xhaz/build/vignette.rds |binary xhaz-2.0.2/xhaz/data/breast.rda |only xhaz-2.0.2/xhaz/data/ccr.mevents.rda |only xhaz-2.0.2/xhaz/inst/CITATION | 52 xhaz-2.0.2/xhaz/inst/doc/introduction.R | 12 xhaz-2.0.2/xhaz/inst/doc/introduction.Rmd | 48 xhaz-2.0.2/xhaz/inst/doc/introduction.html | 1035 ++++---- xhaz-2.0.2/xhaz/inst/doc/rescaling_excess_hazard_models.R |only xhaz-2.0.2/xhaz/inst/doc/rescaling_excess_hazard_models.Rmd |only xhaz-2.0.2/xhaz/inst/doc/rescaling_excess_hazard_models.html |only xhaz-2.0.2/xhaz/man/AIC.bsplines.Rd | 100 xhaz-2.0.2/xhaz/man/AIC.constant.Rd | 106 xhaz-2.0.2/xhaz/man/AIC.mexhazLT.Rd |only xhaz-2.0.2/xhaz/man/BIC.bsplines.Rd | 91 xhaz-2.0.2/xhaz/man/BIC.constant.Rd | 97 xhaz-2.0.2/xhaz/man/BIC.mexhazLT.Rd |only xhaz-2.0.2/xhaz/man/anova.bsplines.Rd | 198 - xhaz-2.0.2/xhaz/man/anova.constant.Rd | 200 - xhaz-2.0.2/xhaz/man/anova.mexhazLT.Rd |only xhaz-2.0.2/xhaz/man/breast.Rd |only xhaz-2.0.2/xhaz/man/ccr.mevents.Rd |only xhaz-2.0.2/xhaz/man/dataCancer.Rd | 104 xhaz-2.0.2/xhaz/man/duplicate.Rd | 200 + xhaz-2.0.2/xhaz/man/exphaz.Rd | 188 - xhaz-2.0.2/xhaz/man/mexhazLT.Rd |only xhaz-2.0.2/xhaz/man/plot.bsplines.Rd | 264 +- xhaz-2.0.2/xhaz/man/plot.predxhaz.Rd | 215 - xhaz-2.0.2/xhaz/man/predict.bsplines.Rd | 212 - xhaz-2.0.2/xhaz/man/predict.constant.Rd | 204 - xhaz-2.0.2/xhaz/man/print.bsplines.Rd | 140 - xhaz-2.0.2/xhaz/man/print.constant.Rd | 113 xhaz-2.0.2/xhaz/man/print.predxhaz.Rd | 128 - xhaz-2.0.2/xhaz/man/qbs.Rd | 80 xhaz-2.0.2/xhaz/man/rescaledData.Rd | 76 xhaz-2.0.2/xhaz/man/simuData.Rd | 92 xhaz-2.0.2/xhaz/man/summary.bsplines.Rd | 136 - xhaz-2.0.2/xhaz/man/summary.constant.Rd | 111 xhaz-2.0.2/xhaz/man/xhaz-package.Rd | 362 +-- xhaz-2.0.2/xhaz/man/xhaz.Rd | 716 +++--- xhaz-2.0.2/xhaz/vignettes/introduction.Rmd | 48 xhaz-2.0.2/xhaz/vignettes/rescaling_excess_hazard_models.Rmd |only 89 files changed, 4680 insertions(+), 3941 deletions(-)
Title: Utilities to Retrieve Rulelists from Model Fits, Filter, Prune,
Reorder and Predict on Unseen Data
Description: Provides a framework to work with decision rules. Rules can be extracted from supported models, augmented with (custom) metrics using validation data, manipulated using standard dataframe operations, reordered and pruned based on a metric, predict on unseen (test) data. Utilities include; Creating a rulelist manually, Exporting a rulelist as a SQL case statement and so on. The package offers two classes; rulelist and ruleset based on dataframe.
Author: Srikanth Komala Sheshachala [aut, cre],
Amith Kumar Ullur Raghavendra [aut]
Maintainer: Srikanth Komala Sheshachala <sri.teach@gmail.com>
Diff between tidyrules versions 0.1.5 dated 2020-06-04 and 0.2.7 dated 2024-06-29
tidyrules-0.1.5/tidyrules/R/c5.R |only tidyrules-0.1.5/tidyrules/R/cubist.R |only tidyrules-0.1.5/tidyrules/R/generic.R |only tidyrules-0.1.5/tidyrules/R/output_formats.R |only tidyrules-0.1.5/tidyrules/R/rpart.R |only tidyrules-0.1.5/tidyrules/R/rule_translators.R |only tidyrules-0.1.5/tidyrules/R/varSpec.R |only tidyrules-0.1.5/tidyrules/build |only tidyrules-0.1.5/tidyrules/inst |only tidyrules-0.1.5/tidyrules/man/ruleRToPython.Rd |only tidyrules-0.1.5/tidyrules/man/ruleRToSQL.Rd |only tidyrules-0.1.5/tidyrules/man/tidyRules.C5.0.Rd |only tidyrules-0.1.5/tidyrules/man/tidyRules.Rd |only tidyrules-0.1.5/tidyrules/man/tidyRules.cubist.Rd |only tidyrules-0.1.5/tidyrules/man/tidyRules.rpart.Rd |only tidyrules-0.1.5/tidyrules/vignettes |only tidyrules-0.2.7/tidyrules/DESCRIPTION | 30 tidyrules-0.2.7/tidyrules/MD5 | 97 +-- tidyrules-0.2.7/tidyrules/NAMESPACE | 73 ++ tidyrules-0.2.7/tidyrules/NEWS.md | 7 tidyrules-0.2.7/tidyrules/R/package.R | 95 ++- tidyrules-0.2.7/tidyrules/R/rulelist.R |only tidyrules-0.2.7/tidyrules/R/ruleset.R |only tidyrules-0.2.7/tidyrules/R/tidy.R |only tidyrules-0.2.7/tidyrules/R/utils.R | 311 ++++++++-- tidyrules-0.2.7/tidyrules/README.md | 117 +-- tidyrules-0.2.7/tidyrules/man/addBackquotes.Rd | 1 tidyrules-0.2.7/tidyrules/man/as_rulelist.Rd |only tidyrules-0.2.7/tidyrules/man/as_rulelist.data.frame.Rd |only tidyrules-0.2.7/tidyrules/man/as_ruleset.Rd |only tidyrules-0.2.7/tidyrules/man/augment.Rd |only tidyrules-0.2.7/tidyrules/man/augment.rulelist.Rd |only tidyrules-0.2.7/tidyrules/man/augment_class_keys.Rd |only tidyrules-0.2.7/tidyrules/man/augment_class_no_keys.Rd |only tidyrules-0.2.7/tidyrules/man/augment_regr_keys.Rd |only tidyrules-0.2.7/tidyrules/man/augment_regr_no_keys.Rd |only tidyrules-0.2.7/tidyrules/man/calculate.Rd |only tidyrules-0.2.7/tidyrules/man/calculate.rulelist.Rd |only tidyrules-0.2.7/tidyrules/man/convert_rule_flavor.Rd |only tidyrules-0.2.7/tidyrules/man/figures |only tidyrules-0.2.7/tidyrules/man/package_tidyrules.Rd | 20 tidyrules-0.2.7/tidyrules/man/plot.prune_rulelist.Rd |only tidyrules-0.2.7/tidyrules/man/plot.rulelist.Rd |only tidyrules-0.2.7/tidyrules/man/positionSpaceOutsideSinglequotes.Rd | 5 tidyrules-0.2.7/tidyrules/man/predict.rulelist.Rd |only tidyrules-0.2.7/tidyrules/man/predict.ruleset.Rd |only tidyrules-0.2.7/tidyrules/man/predict_all_nokeys_rulelist.Rd |only tidyrules-0.2.7/tidyrules/man/predict_all_rulelist.Rd |only tidyrules-0.2.7/tidyrules/man/predict_nokeys_rulelist.Rd |only tidyrules-0.2.7/tidyrules/man/predict_rulelist.Rd |only tidyrules-0.2.7/tidyrules/man/print.prune_rulelist.Rd |only tidyrules-0.2.7/tidyrules/man/print.rulelist.Rd |only tidyrules-0.2.7/tidyrules/man/print.ruleset.Rd |only tidyrules-0.2.7/tidyrules/man/prune.Rd |only tidyrules-0.2.7/tidyrules/man/prune.rulelist.Rd |only tidyrules-0.2.7/tidyrules/man/removeEmptyLines.Rd | 1 tidyrules-0.2.7/tidyrules/man/reorder.Rd |only tidyrules-0.2.7/tidyrules/man/reorder.rulelist.Rd |only tidyrules-0.2.7/tidyrules/man/rulelist.Rd |only tidyrules-0.2.7/tidyrules/man/ruleset.Rd |only tidyrules-0.2.7/tidyrules/man/set_keys.Rd |only tidyrules-0.2.7/tidyrules/man/set_validation_data.Rd |only tidyrules-0.2.7/tidyrules/man/strHead.Rd | 1 tidyrules-0.2.7/tidyrules/man/strReplaceReduce.Rd | 1 tidyrules-0.2.7/tidyrules/man/strSplitSingle.Rd | 1 tidyrules-0.2.7/tidyrules/man/strTail.Rd | 1 tidyrules-0.2.7/tidyrules/man/tidy.C5.0.Rd |only tidyrules-0.2.7/tidyrules/man/tidy.Rd |only tidyrules-0.2.7/tidyrules/man/tidy.constparty.Rd |only tidyrules-0.2.7/tidyrules/man/tidy.cubist.Rd |only tidyrules-0.2.7/tidyrules/man/tidy.rpart.Rd |only tidyrules-0.2.7/tidyrules/man/to_sql_case.Rd |only tidyrules-0.2.7/tidyrules/man/varSpec.Rd | 20 tidyrules-0.2.7/tidyrules/tests/testthat/test-c5.R | 54 - tidyrules-0.2.7/tidyrules/tests/testthat/test-cubist.R | 55 - tidyrules-0.2.7/tidyrules/tests/testthat/test-party.R |only tidyrules-0.2.7/tidyrules/tests/testthat/test-rpart.R | 97 +-- tidyrules-0.2.7/tidyrules/tests/testthat/test-rulelist.R |only 78 files changed, 659 insertions(+), 328 deletions(-)
Title: Plot Function for Single-Case Data Frames
Description: Add-on for the 'scan' package that creates plots
from single-case data frames ('scdf'). It includes functions for styling
single-case plots, adding phase-based lines to indicate various statistical
parameters, and predefined themes for presentations and publications. More
information and in depth examples can be found in the online book
"Analyzing Single-Case Data with R and 'scan"
Jürgen Wilbert (2023) <https://jazznbass.github.io/scan-Book/>.
Author: Juergen Wilbert [aut, cre]
Maintainer: Juergen Wilbert <juergen.wilbert@uni-muenster.de>
Diff between scplot versions 0.3.3 dated 2023-06-03 and 0.4.0 dated 2024-06-29
DESCRIPTION | 14 +++--- MD5 | 42 ++++++++++--------- NAMESPACE | 8 +++ NEWS.md | 14 +++++- R/add_arrow.R | 8 ++- R/add_line.R |only R/add_marks.R | 4 - R/add_statline.R | 27 +++++++----- R/as_ggplot.R | 94 +++++++++++++++++++++++++++++++++++------- R/forestplots.R |only R/new_theme.R | 2 R/private_check.R |only R/private_scplot.R | 8 +-- R/private_statline.R | 10 ++-- R/private_themes.R | 112 +++++++++++++++++++++++++++++++++++++++++++++++++-- R/scplot-package.R | 3 - R/scplot.R | 49 +++++++++++++++++++--- R/title_caption.R | 5 +- man/add_arrow.Rd | 2 man/add_line.Rd |only man/add_marks.Rd | 4 - man/add_statline.Rd | 7 +-- man/add_title.Rd | 4 + man/plot.sc_hplm.Rd |only man/plot.sc_tauu.Rd |only 25 files changed, 328 insertions(+), 89 deletions(-)
Title: Estimate Survival from Common Data Model Cohorts
Description: Estimate survival using data mapped to the Observational Medical Outcomes Partnership common data model. Survival can be estimated based on user-defined study cohorts.
Author: Edward Burn [aut, cre] ,
Kim Lopez [aut] ,
Marti Catala [ctb] ,
Xintong Li [ctb] ,
Danielle Newby [ctb]
Maintainer: Edward Burn <edward.burn@ndorms.ox.ac.uk>
Diff between CohortSurvival versions 0.5.1 dated 2024-05-18 and 0.5.2 dated 2024-06-29
DESCRIPTION | 12 MD5 | 60 R/CohortSurvival-package.R | 16 R/benchmarkCohortSurvival.R | 1082 +++--- R/deathDiagnostics.R | 428 +- R/estimateSurvival.R | 3227 ++++++++++---------- R/plotSurvival.R | 632 ++- R/recordAttrition.R | 130 R/tableSurvival.R | 481 +-- R/utils-pipe.R | 28 R/utils-tidy-eval.R | 216 - R/utils.R | 118 build/vignette.rds |binary inst/doc/a01_Single_event_of_interest.Rmd | 226 - inst/doc/a01_Single_event_of_interest.html | 220 - inst/doc/a02_Competing_risk_survival.Rmd | 262 - inst/doc/a02_Competing_risk_survival.html | 224 - inst/doc/a03_Further_survival_analyses.html | 14 man/CohortSurvival-package.Rd | 2 man/pipe.Rd | 40 man/plotSurvival.Rd | 7 man/tidyeval.Rd | 202 - tests/testthat.R | 24 tests/testthat/test-addCohortSurvival.R | 1720 +++++----- tests/testthat/test-deathDiagnostics.R | 372 +- tests/testthat/test-estimateSurvival.R | 4449 ++++++++++++++-------------- tests/testthat/test-mockMGUS2cdm.R | 26 tests/testthat/test-plotSurvival.R | 338 +- tests/testthat/test-tableSurvival.R | 6 vignettes/a01_Single_event_of_interest.Rmd | 226 - vignettes/a02_Competing_risk_survival.Rmd | 262 - 31 files changed, 7645 insertions(+), 7405 deletions(-)
More information about CohortSurvival at CRAN
Permanent link
Title: Behavior-Driven Development for R
Description: Write executable specifications in a natural language that describes how your code should behave.
Write specifications in feature files using 'Gherkin' language and execute them using functions implemented in R.
Use them as an extension to your 'testthat' tests to provide a high level description of how your code works.
Author: Jakub Sobolewski [aut, cre]
Maintainer: Jakub Sobolewski <jakupsob@gmail.com>
Diff between cucumber versions 1.0.3 dated 2024-06-09 and 1.0.4 dated 2024-06-29
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NAMESPACE | 1 + NEWS.md | 4 ++++ R/test.R | 16 +++++++++++++++- build/vignette.rds |binary man/test.Rd | 9 ++++++++- tests/testthat/test-examples.R | 1 + 8 files changed, 40 insertions(+), 13 deletions(-)
Title: Search Contributed R Packages, Sort by Package
Description: Search contributed R packages, sort by package.
Author: Spencer Graves [cre, aut, cph],
Sundar Dorai-Raj [aut], and Romain Francois [ctb]
Maintainer: Spencer Graves <spencer.graves@prodsyse.com>
Diff between sos versions 2.1-7 dated 2023-05-26 and 2.1-8 dated 2024-06-29
sos-2.1-7/sos/inst/doc/sos.Rnw |only sos-2.1-7/sos/inst/doc/sos.pdf |only sos-2.1-7/sos/vignettes/RJournal.sty |only sos-2.1-7/sos/vignettes/sos.Rnw |only sos-2.1-8/sos/DESCRIPTION | 15 +- sos-2.1-8/sos/MD5 | 24 ++-- sos-2.1-8/sos/R/Extract.findFn.R | 23 +++- sos-2.1-8/sos/R/writeFindFn2xls.R | 16 ++- sos-2.1-8/sos/build/vignette.rds |binary sos-2.1-8/sos/inst/WORDLIST | 2 sos-2.1-8/sos/inst/doc/sos.R | 150 ++++++++--------------------- sos-2.1-8/sos/inst/doc/sos.Rmd |only sos-2.1-8/sos/inst/doc/sos.html |only sos-2.1-8/sos/man/Extract.findFn.Rd | 12 +- sos-2.1-8/sos/man/findFn.Rd | 42 +++----- sos-2.1-8/sos/vignettes/sos-references.bib |only sos-2.1-8/sos/vignettes/sos.Rmd |only 17 files changed, 127 insertions(+), 157 deletions(-)
Title: Music Notation Syntax, Manipulation, Analysis and Transcription
in R
Description: Provides a music notation syntax and a collection of music
programming functions for generating, manipulating, organizing, and analyzing
musical information in R. Music syntax can be entered directly in character
strings, for example to quickly transcribe short pieces of music. The
package contains functions for directly performing various mathematical,
logical and organizational operations and musical transformations on special
object classes that facilitate working with music data and notation. The
same music data can be organized in tidy data frames for a familiar and
powerful approach to the analysis of large amounts of structured music data.
Functions are available for mapping seamlessly between these formats and
their representations of musical information. The package also provides an
API to 'LilyPond' (<https://lilypond.org/>) for transcribing musical
representations in R into tablature ("tabs") and sheet music. 'LilyPond' is
open source music engraving software for gener [...truncated...]
Author: Matthew Leonawicz [aut, cre]
Maintainer: Matthew Leonawicz <mfleonawicz@gmail.com>
Diff between tabr versions 0.4.9 dated 2023-09-21 and 0.5.0 dated 2024-06-29
DESCRIPTION | 40 +++---- MD5 | 28 ++--- NEWS.md | 5 R/plot.R | 202 +++++++++++++++++++++++++-------------- README.md | 4 build/vignette.rds |binary inst/WORDLIST | 3 inst/doc/tabr-prog-chords.html | 2 inst/doc/tabr-prog-music.html | 2 inst/doc/tabr-prog-noteinfo.html | 2 inst/doc/tabr-prog-notes.html | 2 inst/doc/tabr-prog-nw.html | 2 inst/doc/tabr-prog-scales.html | 2 man/plot_fretboard.Rd | 77 +++++++++----- tests/testthat/test-plot.R | 46 ++++++-- 15 files changed, 268 insertions(+), 149 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-06-28 0.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-09-06 0.2.0
2019-04-01 0.1.0
Title: Hyperband for 'mlr3'
Description: Successive Halving (Jamieson and Talwalkar (2016)
<doi:10.48550/arXiv.1502.07943>) and Hyperband (Li et al. 2018 <doi:10.48550/arXiv.1603.06560>)
optimization algorithm for the mlr3 ecosystem. The implementation in
mlr3hyperband features improved scheduling and parallelizes the evaluation
of configurations. The package includes tuners for hyperparameter
optimization in mlr3tuning and optimizers for black-box optimization in
bbotk.
Author: Marc Becker [aut, cre] ,
Sebastian Gruber [aut] ,
Jakob Richter [aut] ,
Julia Moosbauer [aut] ,
Bernd Bischl [aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3hyperband versions 0.5.0 dated 2024-03-05 and 0.6.0 dated 2024-06-29
mlr3hyperband-0.5.0/mlr3hyperband/R/OptimizerHyperband.R |only mlr3hyperband-0.5.0/mlr3hyperband/R/OptimizerSuccessiveHalving.R |only mlr3hyperband-0.5.0/mlr3hyperband/R/TunerHyperband.R |only mlr3hyperband-0.5.0/mlr3hyperband/R/TunerSuccessiveHalving.R |only mlr3hyperband-0.6.0/mlr3hyperband/DESCRIPTION | 19 ++-- mlr3hyperband-0.6.0/mlr3hyperband/MD5 | 33 +++---- mlr3hyperband-0.6.0/mlr3hyperband/NAMESPACE | 9 + mlr3hyperband-0.6.0/mlr3hyperband/NEWS.md | 12 +- mlr3hyperband-0.6.0/mlr3hyperband/R/OptimizerBatchHyperband.R |only mlr3hyperband-0.6.0/mlr3hyperband/R/OptimizerBatchSuccessiveHalving.R |only mlr3hyperband-0.6.0/mlr3hyperband/R/TunerBatchHyperband.R |only mlr3hyperband-0.6.0/mlr3hyperband/R/TunerBatchSuccessiveHalving.R |only mlr3hyperband-0.6.0/mlr3hyperband/R/zzz.R | 3 mlr3hyperband-0.6.0/mlr3hyperband/build |only mlr3hyperband-0.6.0/mlr3hyperband/inst/WORDLIST | 4 mlr3hyperband-0.6.0/mlr3hyperband/man/mlr3hyperband-package.Rd | 2 mlr3hyperband-0.6.0/mlr3hyperband/man/mlr_optimizers_hyperband.Rd | 34 +++---- mlr3hyperband-0.6.0/mlr3hyperband/man/mlr_optimizers_successive_halving.Rd | 32 +++--- mlr3hyperband-0.6.0/mlr3hyperband/man/mlr_tuners_hyperband.Rd | 34 +++---- mlr3hyperband-0.6.0/mlr3hyperband/man/mlr_tuners_successive_halving.Rd | 32 +++--- mlr3hyperband-0.6.0/mlr3hyperband/tests/testthat/test_TunerHyperband.R | 38 ++++---- mlr3hyperband-0.6.0/mlr3hyperband/tests/testthat/test_TunerSuccessiveHalving.R | 46 +++++----- 22 files changed, 154 insertions(+), 144 deletions(-)
Title: Feature Selection for 'mlr3'
Description: Feature selection package of the 'mlr3' ecosystem. It selects
the optimal feature set for any 'mlr3' learner. The package works with
several optimization algorithms e.g. Random Search, Recursive Feature
Elimination, and Genetic Search. Moreover, it can automatically
optimize learners and estimate the performance of optimized feature
sets with nested resampling.
Author: Marc Becker [aut, cre] ,
Patrick Schratz [aut] ,
Michel Lang [aut] ,
Bernd Bischl [aut] ,
John Zobolas [aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3fselect versions 0.12.0 dated 2024-03-09 and 1.0.0 dated 2024-06-29
mlr3fselect-0.12.0/mlr3fselect/R/ArchiveFSelect.R |only mlr3fselect-0.12.0/mlr3fselect/R/CallbackFSelect.R |only mlr3fselect-0.12.0/mlr3fselect/R/ContextEval.R |only mlr3fselect-0.12.0/mlr3fselect/R/FSelectInstanceMultiCrit.R |only mlr3fselect-0.12.0/mlr3fselect/R/FSelectInstanceSingleCrit.R |only mlr3fselect-0.12.0/mlr3fselect/R/FSelectorDesignPoints.R |only mlr3fselect-0.12.0/mlr3fselect/R/FSelectorExhaustiveSearch.R |only mlr3fselect-0.12.0/mlr3fselect/R/FSelectorFromOptimizer.R |only mlr3fselect-0.12.0/mlr3fselect/R/FSelectorGeneticSearch.R |only mlr3fselect-0.12.0/mlr3fselect/R/FSelectorRFE.R |only mlr3fselect-0.12.0/mlr3fselect/R/FSelectorRFECV.R |only mlr3fselect-0.12.0/mlr3fselect/R/FSelectorRandomSearch.R |only mlr3fselect-0.12.0/mlr3fselect/R/FSelectorSequential.R |only mlr3fselect-0.12.0/mlr3fselect/R/FSelectorShadowVariableSearch.R |only mlr3fselect-0.12.0/mlr3fselect/man/ArchiveFSelect.Rd |only mlr3fselect-0.12.0/mlr3fselect/man/CallbackFSelect.Rd |only mlr3fselect-0.12.0/mlr3fselect/man/ContextEval.Rd |only mlr3fselect-0.12.0/mlr3fselect/man/FSelectInstanceMultiCrit.Rd |only mlr3fselect-0.12.0/mlr3fselect/man/FSelectInstanceSingleCrit.Rd |only mlr3fselect-0.12.0/mlr3fselect/man/FSelectorFromOptimizer.Rd |only mlr3fselect-0.12.0/mlr3fselect/man/callback_fselect.Rd |only mlr3fselect-1.0.0/mlr3fselect/DESCRIPTION | 40 +- mlr3fselect-1.0.0/mlr3fselect/MD5 | 138 +++++----- mlr3fselect-1.0.0/mlr3fselect/NAMESPACE | 41 +- mlr3fselect-1.0.0/mlr3fselect/NEWS.md | 40 +- mlr3fselect-1.0.0/mlr3fselect/R/ArchiveBatchFSelect.R |only mlr3fselect-1.0.0/mlr3fselect/R/AutoFSelector.R | 18 - mlr3fselect-1.0.0/mlr3fselect/R/CallbackBatchFSelect.R |only mlr3fselect-1.0.0/mlr3fselect/R/ContextBatchFSelect.R |only mlr3fselect-1.0.0/mlr3fselect/R/EnsembleFSResult.R |only mlr3fselect-1.0.0/mlr3fselect/R/FSelectInstanceBatchMultiCrit.R |only mlr3fselect-1.0.0/mlr3fselect/R/FSelectInstanceBatchSingleCrit.R |only mlr3fselect-1.0.0/mlr3fselect/R/FSelector.R | 91 +----- mlr3fselect-1.0.0/mlr3fselect/R/FSelectorBatch.R |only mlr3fselect-1.0.0/mlr3fselect/R/FSelectorBatchDesignPoints.R |only mlr3fselect-1.0.0/mlr3fselect/R/FSelectorBatchExhaustiveSearch.R |only mlr3fselect-1.0.0/mlr3fselect/R/FSelectorBatchFromOptimizerBatch.R |only mlr3fselect-1.0.0/mlr3fselect/R/FSelectorBatchGeneticSearch.R |only mlr3fselect-1.0.0/mlr3fselect/R/FSelectorBatchRFE.R |only mlr3fselect-1.0.0/mlr3fselect/R/FSelectorBatchRFECV.R |only mlr3fselect-1.0.0/mlr3fselect/R/FSelectorBatchRandomSearch.R |only mlr3fselect-1.0.0/mlr3fselect/R/FSelectorBatchSequential.R |only mlr3fselect-1.0.0/mlr3fselect/R/FSelectorBatchShadowVariableSearch.R |only mlr3fselect-1.0.0/mlr3fselect/R/ObjectiveFSelect.R | 76 +---- mlr3fselect-1.0.0/mlr3fselect/R/ObjectiveFSelectBatch.R |only mlr3fselect-1.0.0/mlr3fselect/R/assertions.R | 60 ++++ mlr3fselect-1.0.0/mlr3fselect/R/auto_fselector.R | 2 mlr3fselect-1.0.0/mlr3fselect/R/bibentries.R | 53 +++ mlr3fselect-1.0.0/mlr3fselect/R/ensemble_fselect.R |only mlr3fselect-1.0.0/mlr3fselect/R/fselect.R | 30 +- mlr3fselect-1.0.0/mlr3fselect/R/fselect_nested.R | 2 mlr3fselect-1.0.0/mlr3fselect/R/mlr_callbacks.R | 34 +- mlr3fselect-1.0.0/mlr3fselect/R/sugar.R | 22 - mlr3fselect-1.0.0/mlr3fselect/README.md | 34 +- mlr3fselect-1.0.0/mlr3fselect/inst/WORDLIST | 20 - mlr3fselect-1.0.0/mlr3fselect/inst/testthat/helper_misc.R | 4 mlr3fselect-1.0.0/mlr3fselect/man/ArchiveBatchFSelect.Rd |only mlr3fselect-1.0.0/mlr3fselect/man/AutoFSelector.Rd | 20 - mlr3fselect-1.0.0/mlr3fselect/man/CallbackBatchFSelect.Rd |only mlr3fselect-1.0.0/mlr3fselect/man/ContextBatchFSelect.Rd |only mlr3fselect-1.0.0/mlr3fselect/man/FSelectInstanceBatchMultiCrit.Rd |only mlr3fselect-1.0.0/mlr3fselect/man/FSelectInstanceBatchSingleCrit.Rd |only mlr3fselect-1.0.0/mlr3fselect/man/FSelector.Rd | 68 +--- mlr3fselect-1.0.0/mlr3fselect/man/FSelectorBatch.Rd |only mlr3fselect-1.0.0/mlr3fselect/man/FSelectorBatchFromOptimizerBatch.Rd |only mlr3fselect-1.0.0/mlr3fselect/man/ObjectiveFSelect.Rd | 18 - mlr3fselect-1.0.0/mlr3fselect/man/ObjectiveFSelectBatch.Rd |only mlr3fselect-1.0.0/mlr3fselect/man/auto_fselector.Rd | 8 mlr3fselect-1.0.0/mlr3fselect/man/callback_batch_fselect.Rd |only mlr3fselect-1.0.0/mlr3fselect/man/ensemble_fs_result.Rd |only mlr3fselect-1.0.0/mlr3fselect/man/ensemble_fselect.Rd |only mlr3fselect-1.0.0/mlr3fselect/man/fs.Rd | 11 mlr3fselect-1.0.0/mlr3fselect/man/fselect.Rd | 24 - mlr3fselect-1.0.0/mlr3fselect/man/fselect_nested.Rd | 8 mlr3fselect-1.0.0/mlr3fselect/man/fsi.Rd | 10 mlr3fselect-1.0.0/mlr3fselect/man/mlr3fselect-package.Rd | 1 mlr3fselect-1.0.0/mlr3fselect/man/mlr3fselect.backup.Rd | 2 mlr3fselect-1.0.0/mlr3fselect/man/mlr3fselect.one_se_rule.Rd | 4 mlr3fselect-1.0.0/mlr3fselect/man/mlr3fselect_assertions.Rd |only mlr3fselect-1.0.0/mlr3fselect/man/mlr_fselectors.Rd | 1 mlr3fselect-1.0.0/mlr3fselect/man/mlr_fselectors_design_points.Rd | 25 - mlr3fselect-1.0.0/mlr3fselect/man/mlr_fselectors_exhaustive_search.Rd | 27 + mlr3fselect-1.0.0/mlr3fselect/man/mlr_fselectors_genetic_search.Rd | 27 + mlr3fselect-1.0.0/mlr3fselect/man/mlr_fselectors_random_search.Rd | 27 + mlr3fselect-1.0.0/mlr3fselect/man/mlr_fselectors_rfe.Rd | 29 +- mlr3fselect-1.0.0/mlr3fselect/man/mlr_fselectors_rfecv.Rd | 31 +- mlr3fselect-1.0.0/mlr3fselect/man/mlr_fselectors_sequential.Rd | 39 +- mlr3fselect-1.0.0/mlr3fselect/man/mlr_fselectors_shadow_variable_search.Rd | 39 +- mlr3fselect-1.0.0/mlr3fselect/tests/testthat/test_ArchiveFSelect.R | 8 mlr3fselect-1.0.0/mlr3fselect/tests/testthat/test_AutoFSelector.R | 10 mlr3fselect-1.0.0/mlr3fselect/tests/testthat/test_FSelectInstanceMultiCrit.R | 2 mlr3fselect-1.0.0/mlr3fselect/tests/testthat/test_FSelectInstanceSingleCrit.R | 2 mlr3fselect-1.0.0/mlr3fselect/tests/testthat/test_ObjectiveFSelect.R | 18 - mlr3fselect-1.0.0/mlr3fselect/tests/testthat/test_ensemble_fselect.R |only mlr3fselect-1.0.0/mlr3fselect/tests/testthat/test_fselect.R | 14 - mlr3fselect-1.0.0/mlr3fselect/tests/testthat/test_fsi.R | 20 - 96 files changed, 613 insertions(+), 585 deletions(-)
Title: Efficient Phylogenetics on Large Trees
Description: Efficient phylogenetic analyses on massive phylogenies comprising up to millions of tips. Functions include pruning, rerooting, calculation of most-recent common ancestors, calculating distances from the tree root and calculating pairwise distances. Calculation of phylogenetic signal and mean trait depth (trait conservatism), ancestral state reconstruction and hidden character prediction of discrete characters, simulating and fitting models of trait evolution, fitting and simulating diversification models, dating trees, comparing trees, and reading/writing trees in Newick format. Citation: Louca, Stilianos and Doebeli, Michael (2017) <doi:10.1093/bioinformatics/btx701>.
Author: Stilianos Louca
Maintainer: Stilianos Louca <louca.research@gmail.com>
Diff between castor versions 1.8.0 dated 2024-01-09 and 1.8.2 dated 2024-06-29
DESCRIPTION | 8 ++++---- MD5 | 12 +++++++----- NAMESPACE | 3 ++- R/auxiliary_routines.R | 16 ++++++++++------ R/fit_mk.R | 6 +++--- R/tree_from_taxa.R |only man/find_root_of_monophyletic_tips.Rd | 2 +- man/tree_from_taxa.Rd |only 8 files changed, 27 insertions(+), 20 deletions(-)
Title: Manipulate Dates for Finance
Description: Functions to manipulate dates and count days for quantitative finance analysis. The 'quantdates' package considers leap, holidays and business days for relevant calendars in a financial context to simplify quantitative finance calculations, consistent with International Swaps and Derivatives Association (ISDA) (2006) <https://www.isda.org/book/2006-isda-definitions/> regulations.
Author: Julian Chitiva [aut],
Diego Jara [aut],
Erick Translateur [com],
Juan Pablo Bermudez [aut, cre],
Quantil S.A.S [aut, cph]
Maintainer: Juan Pablo Bermudez <juan.bermudez@quantil.com.co>
Diff between quantdates versions 1.0 dated 2020-06-09 and 2.0.2 dated 2024-06-29
DESCRIPTION | 16 - MD5 | 65 ++-- NEWS.md |only R/CountingDates.R | 491 ++++++++++++++++---------------- R/DateManipulation.R | 562 ++++++++++++++++++------------------- R/data.R | 231 ++++++++------- R/onAttach.R | 6 R/onLoad.R | 4 R/sysdata.rda |binary README.md | 146 ++++----- build/vignette.rds |binary data/holiDaysBOG.rda |binary data/holiDaysLDN.rda |binary data/holiDaysNY.rda |binary data/holiDaysNYGB.rda |only data/wdBOG.rda |binary data/wdLDN.rda |binary data/wdNY.rda |binary data/wdNYGB.rda |only inst/doc/quantdates.R | 98 +++--- inst/doc/quantdates.Rmd | 180 +++++------ inst/doc/quantdates.html | 713 +++++++++++++---------------------------------- man/AddBusinessDays.Rd | 13 man/AddDate.Rd | 8 man/BusinessDays.Rd | 19 - man/day_count.Rd | 2 man/difftime_business.Rd | 14 man/holiDaysBOG.Rd | 4 man/holiDaysLDN.Rd | 4 man/holiDaysNY.Rd | 8 man/holiDaysNYGB.Rd |only man/wdBOG.Rd | 2 man/wdLDN.Rd | 2 man/wdNY.Rd | 6 man/wdNYGB.Rd |only vignettes/quantdates.Rmd | 180 +++++------ 36 files changed, 1279 insertions(+), 1495 deletions(-)
Title: Data from all Seasons of Survivor (US) TV Series in Tidy Format
Description: Several datasets which detail the results and events of each season of Survivor. This includes
details on the cast, voting history, immunity and reward challenges, jury votes and viewers. This data is
useful for practicing data wrangling, graph analytics and analysing how each season of Survivor played out.
Includes 'ggplot2' scales and colour palettes for visualisation.
Author: Daniel Oehm [aut, cre],
Carly Levitz [ctb],
Dario Mavec [ctb]
Maintainer: Daniel Oehm <danieloehm@gmail.com>
Diff between survivoR versions 2.3.3 dated 2024-05-29 and 2.3.4 dated 2024-06-29
DESCRIPTION | 6 MD5 | 54 - NEWS.md | 9 R/datasets.R | 13 README.md | 103 +- data/advantage_details.rda |binary data/advantage_movement.rda |binary data/auction_details.rda |binary data/boot_mapping.rda |binary data/castaway_details.rda |binary data/castaways.rda |binary data/challenge_description.rda |binary data/challenge_results.rda |binary data/challenge_summary.rda |binary data/confessionals.rda |binary data/episodes.rda |binary data/jury_votes.rda |binary data/season_summary.rda |binary data/survivor_auction.rda |binary data/tribe_colours.rda |binary data/tribe_mapping.rda |binary data/viewers.rda |binary data/vote_history.rda |binary man/boot_mapping.Rd | 8 man/challenge_results.Rd | 1 man/season_summary.Rd | 2 man/vote_history.Rd | 2 tests/testthat/tests.R | 1705 +++++++++++++++++++++++++++++++++++++++-- 28 files changed, 1773 insertions(+), 130 deletions(-)
Title: Data Analysis Relating to Star Trek
Description: Provides datasets related to the Star Trek fictional universe and functions for working with the data.
The package also provides access to real world datasets based on the televised series and other related licensed media productions.
It interfaces with the Star Trek API (STAPI) (<http://stapi.co/>),
Memory Alpha (<https://memory-alpha.fandom.com/wiki/Portal:Main>), and Memory Beta (<https://memory-beta.fandom.com/wiki/Main_Page>)
to retrieve data, metadata and other information relating to Star Trek.
It also contains several local datasets covering a variety of topics.
The package also provides functions for working with data from other Star Trek-related
R data packages containing larger datasets not stored in 'rtrek'.
Author: Matthew Leonawicz [aut, cre]
Maintainer: Matthew Leonawicz <mfleonawicz@gmail.com>
Diff between rtrek versions 0.4.0 dated 2023-09-14 and 0.5.0 dated 2024-06-29
DESCRIPTION | 16 +++++----- MD5 | 54 ++++++++++++++++++------------------- NEWS.md | 28 +++++++++++-------- R/api.R | 2 - R/ma_support.R | 7 ++-- R/mb_support.R | 6 ++-- R/mb_timeline.R | 2 - R/memory_alpha.R | 11 ++++--- R/memory_beta.R | 11 ++++--- R/novels.R | 4 +- R/rtrek.R | 18 ------------ R/tiles.R | 12 ++++---- README.md | 7 +++- inst/WORDLIST | 4 ++ man/ma_image.Rd | 2 - man/mb_image.Rd | 2 - man/mb_timeline.Rd | 2 - man/memory_alpha.Rd | 2 - man/memory_beta.Rd | 6 ++-- man/rtrek.Rd | 29 ++++++++++--------- man/st_books_wiki.Rd | 4 +- man/st_tiles.Rd | 6 ++-- man/st_tiles_data.Rd | 2 - man/stapi.Rd | 2 - man/tile_coords.Rd | 4 +- tests/testthat/test-data.R | 2 - tests/testthat/test-fonts.R | 2 - tests/testthat/test-memory-alpha.R | 2 - 28 files changed, 126 insertions(+), 123 deletions(-)
Title: Hyperparameter Optimization for 'mlr3'
Description: Hyperparameter optimization package of the 'mlr3' ecosystem.
It features highly configurable search spaces via the 'paradox'
package and finds optimal hyperparameter configurations for any 'mlr3'
learner. 'mlr3tuning' works with several optimization algorithms e.g.
Random Search, Iterated Racing, Bayesian Optimization (in 'mlr3mbo')
and Hyperband (in 'mlr3hyperband'). Moreover, it can automatically
optimize learners and estimate the performance of optimized models
with nested resampling.
Author: Marc Becker [cre, aut] ,
Michel Lang [aut] ,
Jakob Richter [aut] ,
Bernd Bischl [aut] ,
Daniel Schalk [aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3tuning versions 0.20.0 dated 2024-03-05 and 1.0.0 dated 2024-06-29
mlr3tuning-0.20.0/mlr3tuning/R/ArchiveTuning.R |only mlr3tuning-0.20.0/mlr3tuning/R/CallbackTuning.R |only mlr3tuning-0.20.0/mlr3tuning/R/ContextEval.R |only mlr3tuning-0.20.0/mlr3tuning/R/TunerCmaes.R |only mlr3tuning-0.20.0/mlr3tuning/R/TunerDesignPoints.R |only mlr3tuning-0.20.0/mlr3tuning/R/TunerFromOptimizer.R |only mlr3tuning-0.20.0/mlr3tuning/R/TunerGenSA.R |only mlr3tuning-0.20.0/mlr3tuning/R/TunerGridSearch.R |only mlr3tuning-0.20.0/mlr3tuning/R/TunerIrace.R |only mlr3tuning-0.20.0/mlr3tuning/R/TunerNLoptr.R |only mlr3tuning-0.20.0/mlr3tuning/R/TunerRandomSearch.R |only mlr3tuning-0.20.0/mlr3tuning/R/TuningInstanceMulticrit.R |only mlr3tuning-0.20.0/mlr3tuning/man/ArchiveTuning.Rd |only mlr3tuning-0.20.0/mlr3tuning/man/CallbackTuning.Rd |only mlr3tuning-0.20.0/mlr3tuning/man/ContextEval.Rd |only mlr3tuning-0.20.0/mlr3tuning/man/TunerFromOptimizer.Rd |only mlr3tuning-0.20.0/mlr3tuning/man/callback_tuning.Rd |only mlr3tuning-0.20.0/mlr3tuning/man/mlr3tuning.early_stopping.Rd |only mlr3tuning-0.20.0/mlr3tuning/tests/testthat/test_ArchiveTuning.R |only mlr3tuning-0.20.0/mlr3tuning/tests/testthat/test_ObjectiveTuning.R |only mlr3tuning-0.20.0/mlr3tuning/tests/testthat/test_TunerCmaes.R |only mlr3tuning-0.20.0/mlr3tuning/tests/testthat/test_TunerDesignPoints.R |only mlr3tuning-0.20.0/mlr3tuning/tests/testthat/test_TunerGenSA.R |only mlr3tuning-0.20.0/mlr3tuning/tests/testthat/test_TunerGridSearch.R |only mlr3tuning-0.20.0/mlr3tuning/tests/testthat/test_TunerIrace.R |only mlr3tuning-0.20.0/mlr3tuning/tests/testthat/test_TunerNLoptr.R |only mlr3tuning-0.20.0/mlr3tuning/tests/testthat/test_TunerRandomSearch.R |only mlr3tuning-0.20.0/mlr3tuning/tests/testthat/test_hotstart.R |only mlr3tuning-1.0.0/mlr3tuning/DESCRIPTION | 64 - mlr3tuning-1.0.0/mlr3tuning/MD5 | 225 +++-- mlr3tuning-1.0.0/mlr3tuning/NAMESPACE | 60 + mlr3tuning-1.0.0/mlr3tuning/NEWS.md | 13 mlr3tuning-1.0.0/mlr3tuning/R/ArchiveAsyncTuning.R |only mlr3tuning-1.0.0/mlr3tuning/R/ArchiveBatchTuning.R |only mlr3tuning-1.0.0/mlr3tuning/R/AutoTuner.R | 229 ++++- mlr3tuning-1.0.0/mlr3tuning/R/CallbackAsyncTuning.R |only mlr3tuning-1.0.0/mlr3tuning/R/CallbackBatchTuning.R |only mlr3tuning-1.0.0/mlr3tuning/R/ContextAsyncTuning.R |only mlr3tuning-1.0.0/mlr3tuning/R/ContextBatchTuning.R |only mlr3tuning-1.0.0/mlr3tuning/R/ObjectiveTuning.R | 128 -- mlr3tuning-1.0.0/mlr3tuning/R/ObjectiveTuningAsync.R |only mlr3tuning-1.0.0/mlr3tuning/R/ObjectiveTuningBatch.R |only mlr3tuning-1.0.0/mlr3tuning/R/Tuner.R | 96 -- mlr3tuning-1.0.0/mlr3tuning/R/TunerAsync.R |only mlr3tuning-1.0.0/mlr3tuning/R/TunerAsyncDesignPoints.R |only mlr3tuning-1.0.0/mlr3tuning/R/TunerAsyncFromOptimizerAsync.R |only mlr3tuning-1.0.0/mlr3tuning/R/TunerAsyncGridSearch.R |only mlr3tuning-1.0.0/mlr3tuning/R/TunerAsyncRandomSearch.R |only mlr3tuning-1.0.0/mlr3tuning/R/TunerBatch.R |only mlr3tuning-1.0.0/mlr3tuning/R/TunerBatchCmaes.R |only mlr3tuning-1.0.0/mlr3tuning/R/TunerBatchDesignPoints.R |only mlr3tuning-1.0.0/mlr3tuning/R/TunerBatchFromBatchOptimizer.R |only mlr3tuning-1.0.0/mlr3tuning/R/TunerBatchGenSA.R |only mlr3tuning-1.0.0/mlr3tuning/R/TunerBatchGridSearch.R |only mlr3tuning-1.0.0/mlr3tuning/R/TunerBatchInternal.R |only mlr3tuning-1.0.0/mlr3tuning/R/TunerBatchIrace.R |only mlr3tuning-1.0.0/mlr3tuning/R/TunerBatchNLoptr.R |only mlr3tuning-1.0.0/mlr3tuning/R/TunerBatchRandomSearch.R |only mlr3tuning-1.0.0/mlr3tuning/R/TuningInstanceAsyncMulticrit.R |only mlr3tuning-1.0.0/mlr3tuning/R/TuningInstanceAsyncSingleCrit.R |only mlr3tuning-1.0.0/mlr3tuning/R/TuningInstanceBatchMulticrit.R |only mlr3tuning-1.0.0/mlr3tuning/R/TuningInstanceBatchSingleCrit.R |only mlr3tuning-1.0.0/mlr3tuning/R/TuningInstanceMultiCrit.R |only mlr3tuning-1.0.0/mlr3tuning/R/TuningInstanceSingleCrit.R | 183 ---- mlr3tuning-1.0.0/mlr3tuning/R/as_tuner.R |only mlr3tuning-1.0.0/mlr3tuning/R/assertions.R | 63 + mlr3tuning-1.0.0/mlr3tuning/R/auto_tuner.R | 39 mlr3tuning-1.0.0/mlr3tuning/R/extract_inner_tuning_archives.R | 4 mlr3tuning-1.0.0/mlr3tuning/R/extract_inner_tuning_results.R | 6 mlr3tuning-1.0.0/mlr3tuning/R/helper.R | 66 - 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Title: Miscellaneous Functions 'T. Yanagida'
Description: Miscellaneous functions for (1) data management (e.g., grand-mean and group-mean centering, coding variables and reverse coding items, scale and cluster scores, reading and writing Excel and SPSS files), (2) descriptive statistics (e.g., frequency table, cross tabulation, effect size measures), (3) missing data (e.g., descriptive statistics for missing data, missing data pattern, Little's test of Missing Completely at Random, and auxiliary variable analysis), (4) multilevel data (e.g., multilevel descriptive statistics, within-group and between-group correlation matrix, multilevel confirmatory factor analysis, level-specific fit indices, cross-level measurement equivalence evaluation, multilevel composite reliability, and multilevel R-squared measures), (5) item analysis (e.g., confirmatory factor analysis, coefficient alpha and omega, between-group and longitudinal measurement equivalence evaluation), and (6) statistical analysis (e.g., confidence intervals, collinearity and residual [...truncated...]
Author: Takuya Yanagida [aut, cre]
Maintainer: Takuya Yanagida <takuya.yanagida@univie.ac.at>
Diff between misty versions 0.6.4 dated 2024-06-26 and 0.6.5 dated 2024-06-29
DESCRIPTION | 8 - MD5 | 18 +-- NEWS.md | 13 ++ R/mplus.R | 2 R/mplus.print.R | 6 - R/mplus.run.R | 291 ++++++++++++++++------------------------------------- R/mplus.update.R | 2 R/utils.R | 273 +++++++++++++++++++++++++++++++++++++++++++++++++ man/mplus.print.Rd | 8 - man/mplus.run.Rd | 4 10 files changed, 401 insertions(+), 224 deletions(-)
Title: Markov Chain Gaussian Fields Simulation and Parameter Estimation
Description: Simulating and estimating (regime-switching) Markov chain Gaussian
fields with covariance functions of the Gneiting class (Gneiting 2002)
<doi:10.1198/016214502760047113>. It supports parameter estimation by
weighted least squares and maximum likelihood methods, and produces Kriging
forecasts and intervals for existing and new locations.
Author: Tianxia Jia [aut, cre, cph]
Maintainer: Tianxia Jia <tianxia.jia@ucalgary.ca>
Diff between mcgf versions 1.1.0 dated 2024-04-04 and 1.1.1 dated 2024-06-29
DESCRIPTION | 8 MD5 | 18 NEWS.md | 18 R/estimate.R | 4 R/find_dists.R | 3 R/krige_new.R | 25 - build/vignette.rds |binary inst/doc/mcgf.html | 1069 +++++++++++++++++++++++++------------------------- inst/doc/mcgf_rs.html | 881 ++++++++++++++++++++--------------------- man/krige_new.mcgf.Rd | 6 10 files changed, 1035 insertions(+), 997 deletions(-)
Title: Green Index Quantification, Analysis and Visualization
Description: Quantification, analysis, and visualization of urban greenness within city networks using data from 'OpenStreetMap' <https://www.openstreetmap.org>.
Author: Sachit Mahajan [aut, cre]
Maintainer: Sachit Mahajan <sachitmahajan90@gmail.com>
Diff between greenR versions 0.0.1.1 dated 2024-06-27 and 0.0.1.2 dated 2024-06-29
greenR-0.0.1.1/greenR/vignettes/linestring_map.html |only greenR-0.0.1.2/greenR/DESCRIPTION | 6 ++-- greenR-0.0.1.2/greenR/MD5 | 7 ++--- greenR-0.0.1.2/greenR/R/calculate_green_index.R | 16 ++++++++++-- greenR-0.0.1.2/greenR/inst/doc/introduction.html | 26 ++++++++++---------- 5 files changed, 33 insertions(+), 22 deletions(-)
Title: 'GAMS' Modularization Support Package
Description: A collection of tools to create, use and maintain modularized model code written in the modeling
language 'GAMS' (<https://www.gams.com/>). Out-of-the-box 'GAMS' does not come with support for modularized
model code. This package provides the tools necessary to convert a standard 'GAMS' model to a modularized one
by introducing a modularized code structure together with a naming convention which emulates local
environments. In addition, this package provides tools to monitor the compliance of the model code with
modular coding guidelines.
Author: Jan Philipp Dietrich [aut, cre] ,
David Klein [aut] ,
Anastasis Giannousakis [aut],
Felicitas Beier [aut] ,
Johannes Koch [aut] ,
Lavinia Baumstark [aut] ,
Mika Pflueger [aut],
Oliver Richters [aut]
Maintainer: Jan Philipp Dietrich <dietrich@pik-potsdam.de>
Diff between gms versions 0.4.0 dated 2020-07-01 and 0.31.2 dated 2024-06-29
gms-0.31.2/gms/DESCRIPTION | 45 gms-0.31.2/gms/LICENSE | 2 gms-0.31.2/gms/MD5 | 169 +- gms-0.31.2/gms/NAMESPACE | 22 gms-0.31.2/gms/R/checkAppearance.R | 152 +- gms-0.31.2/gms/R/checkNoTabs.R |only gms-0.31.2/gms/R/checkSwitchAppearance.R | 2 gms-0.31.2/gms/R/check_config.R | 142 +- gms-0.31.2/gms/R/chooseFromList.R |only gms-0.31.2/gms/R/codeCheck.R | 648 ++++++---- gms-0.31.2/gms/R/codeExtract.R | 2 gms-0.31.2/gms/R/convert.modularGAMS.R | 2 gms-0.31.2/gms/R/copy_input.R | 42 gms-0.31.2/gms/R/delete_olddata.R | 2 gms-0.31.2/gms/R/download_distribute.R | 127 + gms-0.31.2/gms/R/download_unpack.R | 159 +- gms-0.31.2/gms/R/escapeRegex.R | 8 gms-0.31.2/gms/R/getLine.R |only gms-0.31.2/gms/R/get_info.R | 21 gms-0.31.2/gms/R/getfiledestinations.R | 58 gms-0.31.2/gms/R/gms-package.R |only gms-0.31.2/gms/R/interfaceplot.R | 206 +-- gms-0.31.2/gms/R/is.modularGAMS.R | 2 gms-0.31.2/gms/R/is_model_locked.R |only gms-0.31.2/gms/R/loadConfig.R |only gms-0.31.2/gms/R/model_dependencies.R | 2 gms-0.31.2/gms/R/model_lock.R | 163 +- gms-0.31.2/gms/R/model_unlock.R | 34 gms-0.31.2/gms/R/module.skeleton.R | 1 gms-0.31.2/gms/R/modules_interfaceplot.R | 8 gms-0.31.2/gms/R/publish_data.R | 94 - gms-0.31.2/gms/R/readDeclarations.R | 133 +- gms-0.31.2/gms/R/readDefaultConfig.R |only gms-0.31.2/gms/R/readFileOrVector.R |only gms-0.31.2/gms/R/readParameterValues.R |only gms-0.31.2/gms/R/readSetglobals.R | 18 gms-0.31.2/gms/R/readSettings.R |only gms-0.31.2/gms/R/read_yaml_header.R | 19 gms-0.31.2/gms/R/replace_in_file.R | 11 gms-0.31.2/gms/R/saveConfig.R |only gms-0.31.2/gms/R/selectScript.R | 171 +- gms-0.31.2/gms/R/setScenario.R | 10 gms-0.31.2/gms/R/settingsCheck.R | 34 gms-0.31.2/gms/R/singleGAMSfile.R | 206 ++- gms-0.31.2/gms/R/tardir.R | 4 gms-0.31.2/gms/R/updateInterfaceMapping.R | 16 gms-0.31.2/gms/R/update_modules_embedding.R | 172 +- gms-0.31.2/gms/R/warning.R | 2 gms-0.31.2/gms/R/writeSets.R |only gms-0.31.2/gms/README.md | 27 gms-0.31.2/gms/build |only gms-0.31.2/gms/inst/CITATION | 2 gms-0.31.2/gms/inst/dummymodel/HOWTOCITE.cff | 1 gms-0.31.2/gms/inst/dummymodel/core/core.gms | 3 gms-0.31.2/gms/inst/dummymodel/core/sets.gms | 1 gms-0.31.2/gms/inst/dummymodel/literature.bib | 1 gms-0.31.2/gms/inst/dummymodel/main.gms | 8 gms-0.31.2/gms/inst/dummymodel/modules/02_crazymodule/complex/realization.gms | 7 gms-0.31.2/gms/inst/dummymodel/modules/03_Rmodule |only gms-0.31.2/gms/inst/dummymodel/modules/include.gms | 1 gms-0.31.2/gms/inst/extdata/full.gms | 34 gms-0.31.2/gms/inst/extdata/full_embed.gms |only gms-0.31.2/gms/man/checkAppearance.Rd | 9 gms-0.31.2/gms/man/checkNoTabs.Rd |only gms-0.31.2/gms/man/check_config.Rd | 11 gms-0.31.2/gms/man/chooseFromList.Rd |only gms-0.31.2/gms/man/codeCheck.Rd | 20 gms-0.31.2/gms/man/download_distribute.Rd | 16 gms-0.31.2/gms/man/download_unpack.Rd | 15 gms-0.31.2/gms/man/getLine.Rd |only gms-0.31.2/gms/man/getfiledestinations.Rd | 11 gms-0.31.2/gms/man/gms-package.Rd |only gms-0.31.2/gms/man/loadConfig.Rd |only gms-0.31.2/gms/man/model_lock.Rd | 62 gms-0.31.2/gms/man/publish_data.Rd | 4 gms-0.31.2/gms/man/readDefaultConfig.Rd |only gms-0.31.2/gms/man/readFileOrVector.Rd |only gms-0.31.2/gms/man/readParameterValues.Rd |only gms-0.31.2/gms/man/readSettings.Rd |only gms-0.31.2/gms/man/replace_in_file.Rd | 2 gms-0.31.2/gms/man/saveConfig.Rd |only gms-0.31.2/gms/man/selectScript.Rd | 2 gms-0.31.2/gms/man/settingsCheck.Rd | 4 gms-0.31.2/gms/man/singleGAMSfile.Rd | 20 gms-0.31.2/gms/man/tardir.Rd | 2 gms-0.31.2/gms/man/update_modules_embedding.Rd | 2 gms-0.31.2/gms/man/writeSets.Rd |only gms-0.31.2/gms/tests/testthat/test-checkConfig.R | 33 gms-0.31.2/gms/tests/testthat/test-checkNoTabs.R |only gms-0.31.2/gms/tests/testthat/test-chooseFromList.R |only gms-0.31.2/gms/tests/testthat/test-codeCheck.R | 53 gms-0.31.2/gms/tests/testthat/test-interfaceplot.R | 24 gms-0.31.2/gms/tests/testthat/test-modellock.R |only gms-0.31.2/gms/tests/testthat/test-readDeclarations.R | 64 gms-0.31.2/gms/tests/testthat/test-readDefaultConfig.R |only gms-0.31.2/gms/tests/testthat/test-readParameterValues.R |only gms-0.31.2/gms/tests/testthat/test-readSetglobals.R |only gms-0.31.2/gms/tests/testthat/test-readSettings.R |only gms-0.31.2/gms/tests/testthat/test-saveConfig.R |only gms-0.31.2/gms/tests/testthat/test-singleGAMSfile.R | 10 gms-0.31.2/gms/tests/testthat/test-update_modules_embedding.R |only gms-0.4.0/gms/tests/testthat/test-travisCI.R |only 102 files changed, 1997 insertions(+), 1361 deletions(-)
Title: Fast Algorithms for Fitting Topic Models and Non-Negative Matrix
Factorizations to Count Data
Description: Implements fast, scalable optimization algorithms for
fitting topic models ("grade of membership" models) and
non-negative matrix factorizations to count data. The methods
exploit the special relationship between the multinomial topic
model (also, "probabilistic latent semantic indexing") and Poisson
non-negative matrix factorization. The package provides tools to
compare, annotate and visualize model fits, including functions to
efficiently create "structure plots" and identify key features in
topics. The 'fastTopics' package is a successor to the
'CountClust' package. For more information, see
<doi:10.48550/arXiv.2105.13440> and
<doi:10.1186/s13059-023-03067-9>.
Author: Peter Carbonetto [aut, cre],
Kevin Luo [aut],
Kushal Dey [aut],
Joyce Hsiao [ctb],
Abhishek Sarkar [ctb],
Anthony Hung [ctb],
Xihui Lin [ctb],
Paul C. Boutros [ctb],
Minzhe Wang [ctb],
Tracy Ke [ctb],
Eric Weine [ctb],
Matthew Stephens [aut]
Maintainer: Peter Carbonetto <peter.carbonetto@gmail.com>
Diff between fastTopics versions 0.6-163 dated 2024-01-15 and 0.6-186 dated 2024-06-29
fastTopics-0.6-163/fastTopics/data/datalist |only fastTopics-0.6-186/fastTopics/DESCRIPTION | 30 - fastTopics-0.6-186/fastTopics/MD5 | 57 +- fastTopics-0.6-186/fastTopics/NAMESPACE | 2 fastTopics-0.6-186/fastTopics/R/de_analysis.R | 34 + fastTopics-0.6-186/fastTopics/R/fit_poisson_nmf.R | 76 +++ fastTopics-0.6-186/fastTopics/R/init_poisson_nmf.R | 9 fastTopics-0.6-186/fastTopics/R/pbmc_facs.R | 3 fastTopics-0.6-186/fastTopics/R/structure_plot.R | 61 ++- fastTopics-0.6-186/fastTopics/README.md | 2 fastTopics-0.6-186/fastTopics/build/partial.rdb |binary fastTopics-0.6-186/fastTopics/build/vignette.rds |binary fastTopics-0.6-186/fastTopics/data/pbmc_facs.RData |binary fastTopics-0.6-186/fastTopics/inst/doc/relationship.html | 197 +++++---- fastTopics-0.6-186/fastTopics/inst/doc/single_cell_rnaseq_basic.R |only fastTopics-0.6-186/fastTopics/inst/doc/single_cell_rnaseq_basic.Rmd |only fastTopics-0.6-186/fastTopics/inst/doc/single_cell_rnaseq_basic.html |only fastTopics-0.6-186/fastTopics/inst/doc/topics_vs_clusters.html | 199 ++++------ fastTopics-0.6-186/fastTopics/man/de_analysis.Rd | 22 - fastTopics-0.6-186/fastTopics/man/fit_poisson_nmf.Rd | 22 - fastTopics-0.6-186/fastTopics/man/pbmc_facs.Rd | 8 fastTopics-0.6-186/fastTopics/man/plot_progress.Rd | 3 fastTopics-0.6-186/fastTopics/man/structure_plot.Rd | 46 +- fastTopics-0.6-186/fastTopics/src/Makevars | 1 fastTopics-0.6-186/fastTopics/src/ccd.cpp | 4 fastTopics-0.6-186/fastTopics/src/misc.cpp | 12 fastTopics-0.6-186/fastTopics/src/pnmfem.cpp | 9 fastTopics-0.6-186/fastTopics/src/poismix.cpp | 4 fastTopics-0.6-186/fastTopics/src/poisson.cpp | 9 fastTopics-0.6-186/fastTopics/src/scd.cpp | 4 fastTopics-0.6-186/fastTopics/tests/testthat/test_plots.R | 6 fastTopics-0.6-186/fastTopics/vignettes/single_cell_rnaseq_basic.Rmd |only 32 files changed, 485 insertions(+), 335 deletions(-)
Title: Bayesian Modal Regression Based on the GUD Family
Description: Provides probability density functions and sampling algorithms for three key distributions from the General Unimodal Distribution (GUD) family: the Flexible Gumbel (FG) distribution, the Double Two-Piece (DTP) Student-t distribution, and the Two-Piece Scale (TPSC) Student-t distribution. Additionally, this package includes a function for Bayesian linear modal regression, leveraging these three distributions for model fitting. The details of the Bayesian modal regression model based on the GUD family can be found at Liu, Huang, and Bai (2022) <doi:10.1016/j.csda.2024.108012>.
Author: Qingyang Liu [aut, cre] ,
Xianzheng Huang [aut] ,
Ray Bai [aut]
Maintainer: Qingyang Liu <qingyang@email.sc.edu>
Diff between GUD versions 0.0.5 dated 2024-05-27 and 1.0.0 dated 2024-06-29
GUD-0.0.5/GUD/LICENSE |only GUD-0.0.5/GUD/R/GUD.R |only GUD-1.0.0/GUD/DESCRIPTION | 22 +++++--- GUD-1.0.0/GUD/MD5 | 41 +++++++++------- GUD-1.0.0/GUD/NAMESPACE | 2 GUD-1.0.0/GUD/NEWS.md | 11 ++++ GUD-1.0.0/GUD/R/DTP.R | 10 ++- GUD-1.0.0/GUD/R/FG.R | 6 +- GUD-1.0.0/GUD/R/GUD-package.R |only GUD-1.0.0/GUD/R/Modalregression.R | 2 GUD-1.0.0/GUD/R/TPSC.R | 5 + GUD-1.0.0/GUD/R/data.R |only GUD-1.0.0/GUD/build |only GUD-1.0.0/GUD/data |only GUD-1.0.0/GUD/inst/CITATION |only GUD-1.0.0/GUD/inst/REFERENCES.bib | 12 +++- GUD-1.0.0/GUD/inst/doc |only GUD-1.0.0/GUD/inst/examples/Modalregression_example.R | 43 ++++++++-------- GUD-1.0.0/GUD/man/GUD.Rd | 4 - GUD-1.0.0/GUD/man/crime.Rd |only GUD-1.0.0/GUD/man/dDTP.Rd | 10 ++- GUD-1.0.0/GUD/man/dFG.Rd | 6 +- GUD-1.0.0/GUD/man/dTPSC.Rd | 5 + GUD-1.0.0/GUD/man/modal_regression.Rd | 46 +++++++++--------- GUD-1.0.0/GUD/vignettes |only 25 files changed, 134 insertions(+), 91 deletions(-)