Title: A Common API to Clustering
Description: A common interface to specifying clustering models, in the
same style as 'parsnip'. Creates unified interface across different
functions and computational engines.
Author: Emil Hvitfeldt [aut, cre] ,
Kelly Bodwin [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Emil Hvitfeldt <emil.hvitfeldt@posit.co>
Diff between tidyclust versions 0.2.2 dated 2024-06-17 and 0.2.3 dated 2024-07-02
DESCRIPTION | 8 ++++---- MD5 | 24 ++++++++++++------------ NAMESPACE | 6 ++++++ NEWS.md | 4 ++++ R/hier_clust.R | 1 + R/k_means.R | 1 + R/misc.R | 1 + R/required_pkgs.R | 3 ++- R/tune_helpers.R | 1 + README.md | 24 ++++++++++++------------ man/cut_height.Rd | 2 +- man/dot-k_means_fit_clustMixType.Rd | 5 +++-- tests/testthat/test-k_means-clustMixType.R | 2 +- 13 files changed, 49 insertions(+), 33 deletions(-)
Title: Validate, Share, and Download Data
Description: Designed to enhance data validation and management processes by employing a set of functions that read a set of rules from a 'CSV' or 'Excel' file and apply them to a dataset. Funded by the National Renewable Energy Laboratory and Possibility Lab, maintained by the Moore Institute for Plastic Pollution Research.
Author: Hannah Sherrod [cre, aut] ,
Nick Leong [aut] ,
Hannah Hapich [aut] ,
Fabian Gomez [aut],
Shelly Moore [aut],
Win Cowger [aut] ,
Scott Coffin [ctb],
Tony Hale [ctb],
Diana Lin [ctb],
Gemma Shusterman [ctb],
Rebecca Sutton [ctb],
Adam Wong [ctb],
Haig [...truncated...]
Maintainer: Hannah Sherrod <hannah@mooreplasticresearch.org>
Diff between One4All versions 0.4 dated 2024-02-29 and 0.5 dated 2024-07-02
One4All-0.4/One4All/R/API.R |only One4All-0.4/One4All/vignettes/appimages/ErrorImageValidator.png |only One4All-0.4/One4All/vignettes/appimages/RulesExampleValidator.png |only One4All-0.4/One4All/vignettes/appimages/SuccessValidator.png |only One4All-0.4/One4All/vignettes/appimages/TablesImageValidator.png |only One4All-0.4/One4All/vignettes/appimages/UploadDataValidator.png |only One4All-0.5/One4All/DESCRIPTION | 12 One4All-0.5/One4All/LICENSE |only One4All-0.5/One4All/MD5 | 103 ++-- One4All-0.5/One4All/NAMESPACE | 6 One4All-0.5/One4All/NEWS.md | 2 One4All-0.5/One4All/R/datasets2.R | 2 One4All-0.5/One4All/R/datasets3.R | 2 One4All-0.5/One4All/R/global.R | 215 +++++++--- One4All-0.5/One4All/README.md | 82 +++ One4All-0.5/One4All/build/vignette.rds |binary One4All-0.5/One4All/inst/doc/app.R | 13 One4All-0.5/One4All/inst/doc/app.Rmd | 56 +- One4All-0.5/One4All/inst/doc/app.html | 144 +++--- One4All-0.5/One4All/inst/doc/datavisualization.R |only One4All-0.5/One4All/inst/doc/datavisualization.Rmd |only One4All-0.5/One4All/inst/doc/datavisualization.html |only One4All-0.5/One4All/inst/doc/imageexplorer.R |only One4All-0.5/One4All/inst/doc/imageexplorer.Rmd |only One4All-0.5/One4All/inst/doc/imageexplorer.html |only One4All-0.5/One4All/inst/doc/package.R | 5 One4All-0.5/One4All/inst/doc/package.Rmd | 31 - One4All-0.5/One4All/inst/doc/package.html | 119 ++--- One4All-0.5/One4All/man/certificate_df.Rd | 3 One4All-0.5/One4All/man/check_for_malicious_files.Rd | 4 One4All-0.5/One4All/man/create_valid_excel.Rd | 5 One4All-0.5/One4All/man/download_all.Rd |only One4All-0.5/One4All/man/figures |only One4All-0.5/One4All/man/invalid_example.Rd | 2 One4All-0.5/One4All/man/query_document_by_object_id.Rd | 20 One4All-0.5/One4All/man/read_data.Rd | 2 One4All-0.5/One4All/man/read_rules.Rd | 8 One4All-0.5/One4All/man/reformat_rules.Rd | 2 One4All-0.5/One4All/man/remote_download.Rd | 2 One4All-0.5/One4All/man/remote_raw_download.Rd | 2 One4All-0.5/One4All/man/remote_share.Rd | 10 One4All-0.5/One4All/man/rows_for_rules.Rd | 4 One4All-0.5/One4All/man/rules_broken.Rd | 2 One4All-0.5/One4All/man/run_app.Rd | 23 - One4All-0.5/One4All/man/valid_example.Rd | 2 One4All-0.5/One4All/man/validate_data.Rd | 4 One4All-0.5/One4All/tests/testthat/tests.R | 52 +- One4All-0.5/One4All/vignettes/app.Rmd | 56 +- One4All-0.5/One4All/vignettes/appimages/DataVis1.jpg |only One4All-0.5/One4All/vignettes/appimages/DataVisMap.jpg |only One4All-0.5/One4All/vignettes/appimages/DataVisPlot.jpg |only One4All-0.5/One4All/vignettes/appimages/DataVisSankey.jpg |only One4All-0.5/One4All/vignettes/appimages/DataVisSynthetic1.jpg |only One4All-0.5/One4All/vignettes/appimages/DataVisSynthetic2.jpg |only One4All-0.5/One4All/vignettes/appimages/DataVisSynthetic3.jpg |only One4All-0.5/One4All/vignettes/appimages/DataVisTable.jpg |only One4All-0.5/One4All/vignettes/appimages/DownloadDataValidator.jpg |only One4All-0.5/One4All/vignettes/appimages/ErrorImageValidator.jpg |only One4All-0.5/One4All/vignettes/appimages/ImageExplorerapp.jpg |only One4All-0.5/One4All/vignettes/appimages/ImageExplorerapp2.jpg |only One4All-0.5/One4All/vignettes/appimages/ImageExplorerapp3.jpg |only One4All-0.5/One4All/vignettes/appimages/RulesExampleValidator.jpg |only One4All-0.5/One4All/vignettes/appimages/SuccessValidator.jpg |only One4All-0.5/One4All/vignettes/appimages/TablesImageValidator.jpg |only One4All-0.5/One4All/vignettes/appimages/UploadDataValidator.jpg |only One4All-0.5/One4All/vignettes/datavisualization.Rmd |only One4All-0.5/One4All/vignettes/imageexplorer.Rmd |only One4All-0.5/One4All/vignettes/package.Rmd | 31 - 68 files changed, 643 insertions(+), 383 deletions(-)
Title: Fitting Linear Models with Endogenous Regressors using Latent
Instrumental Variables
Description: Fits linear models with endogenous regressor using latent instrumental variable approaches.
The methods included in the package are Lewbel's (1997) <doi:10.2307/2171884> higher moments approach as well as
Lewbel's (2012) <doi:10.1080/07350015.2012.643126> heteroscedasticity approach, Park and Gupta's (2012) <doi:10.1287/mksc.1120.0718> joint estimation method
that uses Gaussian copula and Kim and Frees's (2007) <doi:10.1007/s11336-007-9008-1> multilevel generalized
method of moment approach that deals with endogeneity in a multilevel setting.
These are statistical techniques to address the endogeneity problem where no external instrumental variables are needed.
See the publication related to this package in the Journal of Statistical Software for more details: <doi:10.18637/jss.v107.i03>.
Note that with version 2.0.0 sweeping changes were introduced which greatly improve functionality and usability but break backwards compatibility.
Author: Raluca Gui [cre, aut],
Markus Meierer [aut],
Rene Algesheimer [aut],
Patrik Schilter [aut]
Maintainer: Raluca Gui <raluca.gui@gmail.com>
Diff between REndo versions 2.4.9 dated 2023-09-05 and 2.4.10 dated 2024-07-02
DESCRIPTION | 10 +++++----- MD5 | 28 ++++++++++++++-------------- NEWS.md | 10 ++++++++++ R/REndo-package.R | 5 ++--- R/RcppExports.R | 4 ++-- R/f_copulacorrection_interface.R | 5 ++++- R/f_copulacorrection_optimizeLL.R | 26 +++++++++++++------------- R/f_copulacorrectionpstar_continuous.R | 7 ++++--- R/f_copulacorrectionpstar_discrete.R | 9 +++++---- build/partial.rdb |binary build/vignette.rds |binary man/REndo.Rd | 21 ++++++++++++++++++++- man/copulaCorrection.Rd | 4 ++++ src/RcppExports.cpp | 11 ++++------- src/f_copulacorrection_LL_rcpp.cpp | 17 ++++++----------- 15 files changed, 93 insertions(+), 64 deletions(-)
Title: Display Idiomatic Code to Construct Most R Objects
Description: Prints code that can be used to recreate R objects. In a
sense it is similar to 'base::dput()' or 'base::deparse()' but
'constructive' strives to use idiomatic constructors.
Author: Antoine Fabri [aut, cre],
Kirill Mueller [ctb]
Maintainer: Antoine Fabri <antoine.fabri@gmail.com>
Diff between constructive versions 0.3.0 dated 2024-03-05 and 1.0.0 dated 2024-07-02
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constructive-1.0.0/constructive/tests/testthat/_snaps/s3-AsIs.md | 5 constructive-1.0.0/constructive/tests/testthat/_snaps/s3-Date.md | 30 constructive-1.0.0/constructive/tests/testthat/_snaps/s3-POSIXlt.md | 82 + constructive-1.0.0/constructive/tests/testthat/_snaps/s3-atomic.md | 560 +++++++++- constructive-1.0.0/constructive/tests/testthat/_snaps/s3-blob.md |only constructive-1.0.0/constructive/tests/testthat/_snaps/s3-citationFooter.md |only constructive-1.0.0/constructive/tests/testthat/_snaps/s3-citationHeader.md |only constructive-1.0.0/constructive/tests/testthat/_snaps/s3-constructive_options.md | 4 constructive-1.0.0/constructive/tests/testthat/_snaps/s3-data.frame.md | 17 constructive-1.0.0/constructive/tests/testthat/_snaps/s3-data.table.md | 2 constructive-1.0.0/constructive/tests/testthat/_snaps/s3-difftime.md |only constructive-1.0.0/constructive/tests/testthat/_snaps/s3-dots.md | 12 constructive-1.0.0/constructive/tests/testthat/_snaps/s3-environment.md | 91 + constructive-1.0.0/constructive/tests/testthat/_snaps/s3-error.md |only constructive-1.0.0/constructive/tests/testthat/_snaps/s3-expression.md |only constructive-1.0.0/constructive/tests/testthat/_snaps/s3-factor.md | 7 constructive-1.0.0/constructive/tests/testthat/_snaps/s3-function.md | 4 constructive-1.0.0/constructive/tests/testthat/_snaps/s3-ggplot2-ggplot.md |only constructive-1.0.0/constructive/tests/testthat/_snaps/s3-hexmode.md |only constructive-1.0.0/constructive/tests/testthat/_snaps/s3-integer64.md |only constructive-1.0.0/constructive/tests/testthat/_snaps/s3-language.md | 11 constructive-1.0.0/constructive/tests/testthat/_snaps/s3-list.md | 4 constructive-1.0.0/constructive/tests/testthat/_snaps/s3-matrix.md | 5 constructive-1.0.0/constructive/tests/testthat/_snaps/s3-numeric_version.md | 6 constructive-1.0.0/constructive/tests/testthat/_snaps/s3-octmode.md |only constructive-1.0.0/constructive/tests/testthat/_snaps/s3-ordered.md | 7 constructive-1.0.0/constructive/tests/testthat/_snaps/s3-person.md |only constructive-1.0.0/constructive/tests/testthat/_snaps/s3-raw.md |only constructive-1.0.0/constructive/tests/testthat/_snaps/s3-simpleCondition.md |only constructive-1.0.0/constructive/tests/testthat/_snaps/s3-simpleError.md |only constructive-1.0.0/constructive/tests/testthat/_snaps/s3-simpleMessage.md |only constructive-1.0.0/constructive/tests/testthat/_snaps/s3-simpleWarning.md |only constructive-1.0.0/constructive/tests/testthat/_snaps/s3-tbl_df.md | 11 constructive-1.0.0/constructive/tests/testthat/_snaps/s3-warning.md |only constructive-1.0.0/constructive/tests/testthat/_snaps/s4.md | 26 constructive-1.0.0/constructive/tests/testthat/setup.R | 20 constructive-1.0.0/constructive/tests/testthat/test-abort.R | 4 constructive-1.0.0/constructive/tests/testthat/test-construct_dput.R |only constructive-1.0.0/constructive/tests/testthat/test-construct_multi.R | 9 constructive-1.0.0/constructive/tests/testthat/test-construct_reprex.R | 3 constructive-1.0.0/constructive/tests/testthat/test-contains_self_reference.R |only constructive-1.0.0/constructive/tests/testthat/test-deparse_call.R | 41 constructive-1.0.0/constructive/tests/testthat/test-others.R | 19 constructive-1.0.0/constructive/tests/testthat/test-repair_attributes.R | 2 constructive-1.0.0/constructive/tests/testthat/test-s3-AsIs.R | 3 constructive-1.0.0/constructive/tests/testthat/test-s3-Date.R | 11 constructive-1.0.0/constructive/tests/testthat/test-s3-POSIXct.R | 2 constructive-1.0.0/constructive/tests/testthat/test-s3-POSIXlt.R | 57 - constructive-1.0.0/constructive/tests/testthat/test-s3-array.R | 2 constructive-1.0.0/constructive/tests/testthat/test-s3-atomic.R | 155 ++ constructive-1.0.0/constructive/tests/testthat/test-s3-blob.R |only constructive-1.0.0/constructive/tests/testthat/test-s3-citationFooter.R |only constructive-1.0.0/constructive/tests/testthat/test-s3-citationHeader.R |only constructive-1.0.0/constructive/tests/testthat/test-s3-constructive_options.R | 3 constructive-1.0.0/constructive/tests/testthat/test-s3-data.frame.R | 5 constructive-1.0.0/constructive/tests/testthat/test-s3-data.table.R | 2 constructive-1.0.0/constructive/tests/testthat/test-s3-difftime.R |only constructive-1.0.0/constructive/tests/testthat/test-s3-dm.R | 2 constructive-1.0.0/constructive/tests/testthat/test-s3-dots.R | 6 constructive-1.0.0/constructive/tests/testthat/test-s3-environment.R | 27 constructive-1.0.0/constructive/tests/testthat/test-s3-error.R |only constructive-1.0.0/constructive/tests/testthat/test-s3-expression.R |only constructive-1.0.0/constructive/tests/testthat/test-s3-externalptr.R | 2 constructive-1.0.0/constructive/tests/testthat/test-s3-factor.R | 4 constructive-1.0.0/constructive/tests/testthat/test-s3-formula.R | 2 constructive-1.0.0/constructive/tests/testthat/test-s3-function.R | 3 constructive-1.0.0/constructive/tests/testthat/test-s3-ggplot2-ggplot.R | 32 constructive-1.0.0/constructive/tests/testthat/test-s3-grouped_df.R | 2 constructive-1.0.0/constructive/tests/testthat/test-s3-hexmode.R |only constructive-1.0.0/constructive/tests/testthat/test-s3-integer64.R |only constructive-1.0.0/constructive/tests/testthat/test-s3-language.R | 12 constructive-1.0.0/constructive/tests/testthat/test-s3-list.R | 3 constructive-1.0.0/constructive/tests/testthat/test-s3-matrix.R | 3 constructive-1.0.0/constructive/tests/testthat/test-s3-mts.R | 2 constructive-1.0.0/constructive/tests/testthat/test-s3-numeric_version.R | 8 constructive-1.0.0/constructive/tests/testthat/test-s3-octmode.R |only constructive-1.0.0/constructive/tests/testthat/test-s3-ordered.R | 4 constructive-1.0.0/constructive/tests/testthat/test-s3-person.R |only constructive-1.0.0/constructive/tests/testthat/test-s3-quosure.R | 2 constructive-1.0.0/constructive/tests/testthat/test-s3-quosures.R | 2 constructive-1.0.0/constructive/tests/testthat/test-s3-raw.R |only constructive-1.0.0/constructive/tests/testthat/test-s3-rowwise_df.R | 2 constructive-1.0.0/constructive/tests/testthat/test-s3-simpleCondition.R |only constructive-1.0.0/constructive/tests/testthat/test-s3-simpleError.R |only constructive-1.0.0/constructive/tests/testthat/test-s3-simpleMessage.R |only constructive-1.0.0/constructive/tests/testthat/test-s3-simpleWarning.R |only constructive-1.0.0/constructive/tests/testthat/test-s3-tbl_df.R | 3 constructive-1.0.0/constructive/tests/testthat/test-s3-ts.R | 2 constructive-1.0.0/constructive/tests/testthat/test-s3-vctrs_list_of.R | 2 constructive-1.0.0/constructive/tests/testthat/test-s3-warning.R |only constructive-1.0.0/constructive/tests/testthat/test-s4.R | 6 constructive-1.0.0/constructive/tests/testthat/test-utils.R | 2 constructive-1.0.0/constructive/vignettes/extend-constructive.Rmd |only 307 files changed, 4668 insertions(+), 2233 deletions(-)
Title: Detect Aberrant Behavior in Test Data
Description: Detect several types of aberrant behavior, including answer
copying, answer similarity, nonparametric misfit, parametric misfit,
preknowledge, rapid guessing, and test tampering.
Author: Kylie Gorney [aut, cph, cre] ,
Jiayi Deng [aut, cph]
Maintainer: Kylie Gorney <kgorney@msu.edu>
Diff between aberrance versions 0.1.0 dated 2024-02-20 and 0.1.1 dated 2024-07-02
DESCRIPTION | 8 MD5 | 21 - NEWS.md | 12 R/checks.R | 192 +++++----- R/detect-as.R | 967 +++++++++++++++++++++++++++---------------------------- R/detect-pk.R | 690 +++++++++++++++++++-------------------- R/detect-pm.R | 922 ++++++++++++++++++++++++++-------------------------- README.md | 3 inst |only man/detect_as.Rd | 5 man/detect_pk.Rd | 4 man/detect_pm.Rd | 10 12 files changed, 1423 insertions(+), 1411 deletions(-)
Title: Superlatively Fast Fuzzy Joins
Description: Empowers users to fuzzily-merge data frames with millions or tens of millions of rows in minutes with low memory usage. The package uses the locality sensitive hashing algorithms developed by Datar, Immorlica, Indyk and Mirrokni (2004) <doi:10.1145/997817.997857>, and Broder (1998) <doi:10.1109/SEQUEN.1997.666900> to avoid having to compare every pair of records in each dataset, resulting in fuzzy-merges that finish in linear time.
Author: Beniamino Green [aut, cre, cph],
Etienne Bacher [ctb] ,
The authors of the dependency Rust crates [ctb, cph]
Maintainer: Beniamino Green <beniamino.green@yale.edu>
Diff between zoomerjoin versions 0.1.4 dated 2024-01-31 and 0.1.5 dated 2024-07-02
zoomerjoin-0.1.4/zoomerjoin/R/jaccard_similarity.R |only zoomerjoin-0.1.4/zoomerjoin/man/euclidean_anti_join.Rd |only zoomerjoin-0.1.4/zoomerjoin/man/euclidean_full_join.Rd |only zoomerjoin-0.1.4/zoomerjoin/man/euclidean_inner_join.Rd |only zoomerjoin-0.1.4/zoomerjoin/man/euclidean_left_join.Rd |only zoomerjoin-0.1.4/zoomerjoin/man/euclidean_right_join.Rd |only zoomerjoin-0.1.4/zoomerjoin/man/jaccard_anti_join.Rd |only zoomerjoin-0.1.4/zoomerjoin/man/jaccard_full_join.Rd |only zoomerjoin-0.1.4/zoomerjoin/man/jaccard_inner_join.Rd |only zoomerjoin-0.1.4/zoomerjoin/man/jaccard_left_join.Rd |only zoomerjoin-0.1.4/zoomerjoin/man/jaccard_right_join.Rd |only zoomerjoin-0.1.4/zoomerjoin/man/zoomerjoin-package.Rd |only zoomerjoin-0.1.5/zoomerjoin/DESCRIPTION | 26 zoomerjoin-0.1.5/zoomerjoin/MD5 | 111 +- zoomerjoin-0.1.5/zoomerjoin/NAMESPACE | 8 zoomerjoin-0.1.5/zoomerjoin/NEWS.md | 15 zoomerjoin-0.1.5/zoomerjoin/R/em_link.R | 51 - zoomerjoin-0.1.5/zoomerjoin/R/euclidean_join_core.R | 162 +-- zoomerjoin-0.1.5/zoomerjoin/R/euclidean_logical_joins.R | 229 +--- zoomerjoin-0.1.5/zoomerjoin/R/extendr-wrappers.R | 5 zoomerjoin-0.1.5/zoomerjoin/R/hamming_join_core.R |only zoomerjoin-0.1.5/zoomerjoin/R/hamming_logical_joins.R |only zoomerjoin-0.1.5/zoomerjoin/R/jaccard_join_core.R | 325 +++--- zoomerjoin-0.1.5/zoomerjoin/R/jaccard_logical_joins.R | 480 +++------- zoomerjoin-0.1.5/zoomerjoin/R/lsh_properties.R | 135 +- zoomerjoin-0.1.5/zoomerjoin/R/on_load.R | 12 zoomerjoin-0.1.5/zoomerjoin/R/string_group.R | 53 - zoomerjoin-0.1.5/zoomerjoin/R/string_similarities.R |only zoomerjoin-0.1.5/zoomerjoin/README.md | 46 zoomerjoin-0.1.5/zoomerjoin/inst/doc/benchmarks.R | 45 zoomerjoin-0.1.5/zoomerjoin/inst/doc/benchmarks.Rmd | 39 zoomerjoin-0.1.5/zoomerjoin/inst/doc/benchmarks.html | 16 zoomerjoin-0.1.5/zoomerjoin/inst/doc/guided_tour.R | 27 zoomerjoin-0.1.5/zoomerjoin/inst/doc/guided_tour.Rmd | 27 zoomerjoin-0.1.5/zoomerjoin/inst/doc/guided_tour.html | 50 - zoomerjoin-0.1.5/zoomerjoin/inst/doc/matching_vectors.R | 31 zoomerjoin-0.1.5/zoomerjoin/inst/doc/matching_vectors.Rmd | 29 zoomerjoin-0.1.5/zoomerjoin/inst/doc/matching_vectors.html | 37 zoomerjoin-0.1.5/zoomerjoin/man/em_link.Rd | 26 zoomerjoin-0.1.5/zoomerjoin/man/euclidean-joins.Rd |only zoomerjoin-0.1.5/zoomerjoin/man/hamming-joins.Rd |only zoomerjoin-0.1.5/zoomerjoin/man/hamming_distance.Rd |only zoomerjoin-0.1.5/zoomerjoin/man/hamming_probability.Rd |only zoomerjoin-0.1.5/zoomerjoin/man/jaccard-joins.Rd |only zoomerjoin-0.1.5/zoomerjoin/man/jaccard_curve.Rd | 2 zoomerjoin-0.1.5/zoomerjoin/man/jaccard_hyper_grid_search.Rd | 2 zoomerjoin-0.1.5/zoomerjoin/man/jaccard_probability.Rd | 5 zoomerjoin-0.1.5/zoomerjoin/man/jaccard_similarity.Rd | 12 zoomerjoin-0.1.5/zoomerjoin/man/jaccard_string_group.Rd | 10 zoomerjoin-0.1.5/zoomerjoin/src/rust/Cargo.lock | 6 zoomerjoin-0.1.5/zoomerjoin/src/rust/Cargo.toml | 8 zoomerjoin-0.1.5/zoomerjoin/src/rust/src/hamminghasher.rs |only zoomerjoin-0.1.5/zoomerjoin/src/rust/src/lib.rs | 153 ++- zoomerjoin-0.1.5/zoomerjoin/src/rust/src/minhashjoiner.rs | 6 zoomerjoin-0.1.5/zoomerjoin/src/rust/vendor.tar.xz |binary zoomerjoin-0.1.5/zoomerjoin/tests/testthat/_snaps |only zoomerjoin-0.1.5/zoomerjoin/tests/testthat/test-curves.R |only zoomerjoin-0.1.5/zoomerjoin/tests/testthat/test-em_link.R | 48 - zoomerjoin-0.1.5/zoomerjoin/tests/testthat/test-hamming_dist.R |only zoomerjoin-0.1.5/zoomerjoin/tests/testthat/test-test_input_validation.R | 127 +- zoomerjoin-0.1.5/zoomerjoin/tests/testthat/test-test_jaccard_sim.R | 22 zoomerjoin-0.1.5/zoomerjoin/tests/testthat/test-test_logical_euclid_join.R | 132 +- zoomerjoin-0.1.5/zoomerjoin/tests/testthat/test-test_logical_lsh_join.R | 337 ++++--- zoomerjoin-0.1.5/zoomerjoin/tests/testthat/test-test_lsh_properties.R | 53 - zoomerjoin-0.1.5/zoomerjoin/tests/testthat/test-test_string_group.R | 21 zoomerjoin-0.1.5/zoomerjoin/vignettes/benchmarks.Rmd | 39 zoomerjoin-0.1.5/zoomerjoin/vignettes/guided_tour.Rmd | 27 zoomerjoin-0.1.5/zoomerjoin/vignettes/matching_vectors.Rmd | 29 68 files changed, 1562 insertions(+), 1462 deletions(-)
Title: 2D and 3D Movement-Based Kernel Density Estimates (MKDEs)
Description: Provides functions to compute and visualize movement-based kernel density estimates (MKDEs) for animal utilization distributions in 2 or 3 spatial dimensions.
Author: Jeff A. Tracey, James Sheppard, Jun Zhu, Robert Sinkovts, Amit Chourasia, Glenn Lockwood, Matthew Wang, and Robert N. Fisher
Maintainer: Robert Sinkovits <sinkovit@sdsc.edu>
Diff between mkde versions 0.2 dated 2023-07-01 and 0.3 dated 2024-07-02
mkde-0.2/mkde/data/condordem.RData |only mkde-0.2/mkde/data/condordem120.RData |only mkde-0.2/mkde/data/dugongdem.RData |only mkde-0.2/mkde/data/pandadem.RData |only mkde-0.2/mkde/man/condordem.Rd |only mkde-0.2/mkde/man/condordem120.Rd |only mkde-0.2/mkde/man/dugongdem.Rd |only mkde-0.2/mkde/man/pandadem.Rd |only mkde-0.3/mkde/DESCRIPTION | 14 mkde-0.3/mkde/MD5 | 73 mkde-0.3/mkde/NAMESPACE | 8 mkde-0.3/mkde/R/mkdeFunctions.R | 1466 ++++++++++---------- mkde-0.3/mkde/data/datalist | 4 mkde-0.3/mkde/inst |only mkde-0.3/mkde/man/computeAreaRaster.Rd | 7 mkde-0.3/mkde/man/computeContourValues.Rd | 1 mkde-0.3/mkde/man/computeSizeMKDE.Rd | 10 mkde-0.3/mkde/man/deselectLocationsOutsideBounds.Rd | 10 mkde-0.3/mkde/man/initializeAreaRaster.Rd | 9 mkde-0.3/mkde/man/initializeDensity.Rd | 9 mkde-0.3/mkde/man/initializeMKDE2D.Rd | 9 mkde-0.3/mkde/man/initializeMKDE3D.Rd | 9 mkde-0.3/mkde/man/mkde2Dgrid.Rd | 1 mkde-0.3/mkde/man/mkde2Dinteraction.Rd | 9 mkde-0.3/mkde/man/mkde3Dgrid.Rd | 1 mkde-0.3/mkde/man/mkde3Dinteraction.Rd | 11 mkde-0.3/mkde/man/mkdeToRaster.Rd | 10 mkde-0.3/mkde/man/plotMKDE.Rd | 10 mkde-0.3/mkde/man/readdem_example.Rd |only mkde-0.3/mkde/man/setMaximumZfromConstant.Rd | 9 mkde-0.3/mkde/man/setMaximumZfromRaster.Rd | 13 mkde-0.3/mkde/man/setMinimumZfromConstant.Rd | 9 mkde-0.3/mkde/man/setMinimumZfromRaster.Rd | 13 mkde-0.3/mkde/man/writeInterpolatedPathVTK.Rd | 9 mkde-0.3/mkde/man/writeObservedLocationVTK.Rd | 9 mkde-0.3/mkde/man/writeRasterToVTK.Rd | 11 mkde-0.3/mkde/man/writeRasterToXDMF.Rd | 6 mkde-0.3/mkde/man/writeToGRASS.Rd | 9 mkde-0.3/mkde/man/writeToVTK.Rd | 11 mkde-0.3/mkde/man/writeToXDMF.Rd | 9 mkde-0.3/mkde/src/mkdeFunctions.cpp | 38 41 files changed, 933 insertions(+), 884 deletions(-)
Title: Family Age-at-Onset Data Simulation and Penetrance Estimation
Description: Simulates age-at-onset traits associated with a segregating major gene in family data
obtained from population-based, clinic-based, or multi-stage designs. Appropriate ascertainment
correction is utilized to estimate age-dependent penetrance functions either parametrically from
the fitted model or nonparametrically from the data. The Expectation and Maximization algorithm
can infer missing genotypes and carrier probabilities estimated from family's genotype and
phenotype information or from a fitted model. Plot functions include pedigrees of simulated
families and predicted penetrance curves based on specified parameter values.
For more information see Choi, Y.-H., Briollais, L., He, W. and Kopciuk, K. (2021) FamEvent: An
R Package for Generating and Modeling Time-to-Event Data in Family Designs,
Journal of Statistical Software 97 (7), 1-30.
Author: Yun-Hee Choi, Karen Kopciuk, Wenqing He, Laurent Briollais
Maintainer: Yun-Hee Choi <yun-hee.choi@schulich.uwo.ca>
Diff between FamEvent versions 3.1 dated 2024-04-03 and 3.2 dated 2024-07-02
DESCRIPTION | 8 +++--- MD5 | 53 +++++++++++++++++++++++++++++++--------------- NAMESPACE | 14 ++++++++---- R/cumhaz.R | 4 +-- R/cumhaz_co.R |only R/cumhaz_pe.R |only R/familyDesign_tvc.R |only R/familyStructure.R | 2 - R/familyStructure2.R | 8 +++--- R/familyStructure_tvc.R |only R/fgeneZC.R |only R/fgeneZXC.R |only R/gh.R | 2 - R/inv.surv_tvc.R |only R/inv.survp_tvc.R |only R/inv2.surv_tvc.R |only R/loglik_frailty.R | 33 +++++++++++++++++++--------- R/penmodel.R | 43 +++++++++++++++++++++++-------------- R/plot.simfam2.R |only R/plot.simfam_tvc.R |only R/simfam_tvc.R |only R/summary.simfam.R | 4 +-- R/summary.simfam2.R | 4 +-- R/summary.simfam_cmp.R | 4 +-- R/summary.simfam_tvc.R |only R/surv.dist_tvc.R |only R/survp.dist_tvc.R |only man/FamEvent-package.Rd | 43 ++++++++++++++++++++++++++++++------- man/plot.simfam2.Rd |only man/plot.simfam_tvc.Rd |only man/simfam.Rd | 2 - man/simfam2.Rd | 8 +++--- man/simfam_tvc.Rd |only man/summary.simfam.Rd | 1 man/summary.simfam2.Rd | 1 man/summary.simfam_cmp.Rd | 1 man/summary.simfam_tvc.Rd |only 37 files changed, 153 insertions(+), 82 deletions(-)
Title: List, Query, Manipulate System Processes
Description: List, query and manipulate all system processes, on
'Windows', 'Linux' and 'macOS'.
Author: Jay Loden [aut],
Dave Daeschler [aut],
Giampaolo Rodola' [aut],
Gabor Csardi [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between ps versions 1.7.6 dated 2024-01-18 and 1.7.7 dated 2024-07-02
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ src/api-macos.c | 14 ++++++++++++-- src/init.c | 11 +++++++++++ 5 files changed, 34 insertions(+), 9 deletions(-)
Title: Kinship Analysis with Linked Markers
Description: A 'shiny' application for forensic kinship testing, based on
the 'pedsuite' R packages. 'KLINK' is closely aligned with the (non-R)
software 'Familias' and 'FamLink', but offers several unique features,
including visualisations and automated report generation. The
calculation of likelihood ratios supports pairs of linked markers, and
all common mutation models.
Author: Magnus Dehli Vigeland [aut, cre]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between KLINK versions 0.7.3 dated 2024-04-05 and 1.0.0 dated 2024-07-02
DESCRIPTION | 13 - MD5 | 43 +++-- NAMESPACE | 14 + NEWS.md | 17 ++ R/KLINK-package.R | 10 - R/data.R | 7 R/getLinkedPairs.R |only R/karyo.R | 40 +++-- R/linkedLR.R | 62 ++++++- R/markerSummary.R | 25 ++- R/parseXML.R |only R/plotPed.R | 20 +- R/prettyTable.R | 93 ++++++++--- R/utils.R | 1 R/writeResult.R | 310 ++++++++++++++++++++++++++------------- data/LINKAGEMAP.rda |binary inst/shiny/app.R | 357 +++++++++++++++++++++++++++++----------------- inst/shiny/www/custom.css |only man/LINKAGEMAP.Rd | 5 man/getLinkedPairs.Rd |only man/linkedLR.Rd | 33 +++- man/markerSummary.Rd | 5 man/parseXML.Rd |only man/paternity.Rd | 2 man/writeResult.Rd | 12 + 25 files changed, 711 insertions(+), 358 deletions(-)
Title: A Vector Spatio-Temporal Data Structure for Data Analysis
Description: A spatiotemperal data object in a relational data structure to separate the recording of time variant/ invariant variables.
Author: H. Sherry Zhang [aut, cre] ,
Dianne Cook [aut] ,
Ursula Laa [aut] ,
Nicolas Langrene [aut] ,
Patricia Menendez [aut]
Maintainer: H. Sherry Zhang <huizezhangsh@gmail.com>
Diff between cubble versions 0.3.0 dated 2023-06-29 and 0.3.1 dated 2024-07-02
cubble-0.3.0/cubble/R/as_cubble.R |only cubble-0.3.0/cubble/R/check_key.R |only cubble-0.3.0/cubble/R/compat-purrr.r |only cubble-0.3.0/cubble/R/cubble-update.R |only cubble-0.3.0/cubble/R/map-glyph.R |only cubble-0.3.0/cubble/R/utils-pipe.R |only cubble-0.3.0/cubble/man/pipe.Rd |only cubble-0.3.0/cubble/tests/spelling.R |only cubble-0.3.0/cubble/tests/testthat/test-cubble-accessors.R |only cubble-0.3.0/cubble/tests/testthat/test-spatial-temporal.R |only cubble-0.3.1/cubble/DESCRIPTION | 17 cubble-0.3.1/cubble/MD5 | 153 ++--- cubble-0.3.1/cubble/NAMESPACE | 5 cubble-0.3.1/cubble/NEWS.md | 4 cubble-0.3.1/cubble/R/as-cubble.R |only cubble-0.3.1/cubble/R/check-key.R |only cubble-0.3.1/cubble/R/checks.R |only cubble-0.3.1/cubble/R/cubble-accessors.R | 2 cubble-0.3.1/cubble/R/cubble-attrs.R | 2 cubble-0.3.1/cubble/R/cubble-class.R | 43 + cubble-0.3.1/cubble/R/cubble-print.R | 5 cubble-0.3.1/cubble/R/data.R | 4 cubble-0.3.1/cubble/R/dplyr.R | 112 ++- cubble-0.3.1/cubble/R/face-spatial-temporal.R | 16 cubble-0.3.1/cubble/R/glyph.R |only cubble-0.3.1/cubble/R/matching.R | 106 +-- cubble-0.3.1/cubble/R/netcdf.R | 8 cubble-0.3.1/cubble/R/sf.R | 33 - cubble-0.3.1/cubble/R/tsibble.R | 8 cubble-0.3.1/cubble/R/unfold.R | 15 cubble-0.3.1/cubble/R/zzz-compat-purrr.r |only cubble-0.3.1/cubble/R/zzz.R | 2 cubble-0.3.1/cubble/README.md | 50 - cubble-0.3.1/cubble/build/vignette.rds |binary cubble-0.3.1/cubble/inst/doc/cb1class.R | 4 cubble-0.3.1/cubble/inst/doc/cb1class.Rmd | 2 cubble-0.3.1/cubble/inst/doc/cb1class.html | 289 ++++----- cubble-0.3.1/cubble/inst/doc/cb2create.R | 12 cubble-0.3.1/cubble/inst/doc/cb2create.Rmd | 10 cubble-0.3.1/cubble/inst/doc/cb2create.html | 283 ++++----- cubble-0.3.1/cubble/inst/doc/cb3tsibblesf.R | 12 cubble-0.3.1/cubble/inst/doc/cb3tsibblesf.Rmd | 10 cubble-0.3.1/cubble/inst/doc/cb3tsibblesf.html | 286 ++++----- cubble-0.3.1/cubble/inst/doc/cb4glyph.R | 36 - cubble-0.3.1/cubble/inst/doc/cb4glyph.Rmd | 34 - cubble-0.3.1/cubble/inst/doc/cb4glyph.html | 271 ++++----- cubble-0.3.1/cubble/inst/doc/cb5match.R | 32 - cubble-0.3.1/cubble/inst/doc/cb5match.Rmd | 32 - cubble-0.3.1/cubble/inst/doc/cb5match.html | 293 ++++------ cubble-0.3.1/cubble/inst/doc/cb6interactive.R | 10 cubble-0.3.1/cubble/inst/doc/cb6interactive.Rmd | 8 cubble-0.3.1/cubble/inst/doc/cb6interactive.html | 247 ++++---- cubble-0.3.1/cubble/inst/doc/cb7misc.R |only cubble-0.3.1/cubble/inst/doc/cb7misc.Rmd |only cubble-0.3.1/cubble/inst/doc/cb7misc.html |only cubble-0.3.1/cubble/man/accessors.Rd | 2 cubble-0.3.1/cubble/man/as_cubble.Rd | 27 cubble-0.3.1/cubble/man/check_key.Rd | 8 cubble-0.3.1/cubble/man/climate-data.Rd | 2 cubble-0.3.1/cubble/man/cubble-class.Rd | 22 cubble-0.3.1/cubble/man/cubble-package.Rd | 6 cubble-0.3.1/cubble/man/dplyr.Rd | 92 +-- cubble-0.3.1/cubble/man/face.Rd | 4 cubble-0.3.1/cubble/man/glyph.Rd | 71 +- cubble-0.3.1/cubble/man/make_spatial_sf.Rd | 2 cubble-0.3.1/cubble/man/make_temporal_tsibble.Rd | 2 cubble-0.3.1/cubble/man/matching.Rd | 2 cubble-0.3.1/cubble/man/test-data.Rd | 2 cubble-0.3.1/cubble/man/tsibble.Rd | 4 cubble-0.3.1/cubble/man/unfold.Rd | 4 cubble-0.3.1/cubble/man/update.Rd | 14 cubble-0.3.1/cubble/tests/testthat.R | 10 cubble-0.3.1/cubble/tests/testthat/test-as-cubble.R |only cubble-0.3.1/cubble/tests/testthat/test-check-key.R |only cubble-0.3.1/cubble/tests/testthat/test-checks.R |only cubble-0.3.1/cubble/tests/testthat/test-cubble-class.R |only cubble-0.3.1/cubble/tests/testthat/test-cubble-print.R |only cubble-0.3.1/cubble/tests/testthat/test-dplyr.R | 186 ++---- cubble-0.3.1/cubble/tests/testthat/test-face-spatial-temporal.R |only cubble-0.3.1/cubble/tests/testthat/test-glyph.R | 2 cubble-0.3.1/cubble/tests/testthat/test-matching.R | 87 -- cubble-0.3.1/cubble/tests/testthat/test-sf.R |only cubble-0.3.1/cubble/tests/testthat/test-tsibble.R | 25 cubble-0.3.1/cubble/tests/testthat/test-unfold.R |only cubble-0.3.1/cubble/vignettes/cb1class.Rmd | 2 cubble-0.3.1/cubble/vignettes/cb2create.Rmd | 10 cubble-0.3.1/cubble/vignettes/cb3tsibblesf.Rmd | 10 cubble-0.3.1/cubble/vignettes/cb4glyph.Rmd | 34 - cubble-0.3.1/cubble/vignettes/cb5match.Rmd | 32 - cubble-0.3.1/cubble/vignettes/cb6interactive.Rmd | 8 cubble-0.3.1/cubble/vignettes/cb7misc.Rmd |only 91 files changed, 1566 insertions(+), 1560 deletions(-)
Title: Transformation Models with Mixed Effects
Description: Likelihood-based estimation of mixed-effects transformation models
using the Template Model Builder ('TMB', Kristensen et al., 2016)
<doi:10.18637/jss.v070.i05>. The technical details of transformation models
are given in Hothorn et al. (2018) <doi:10.1111/sjos.12291>. Likelihood
contributions of exact, randomly censored (left, right, interval) and
truncated observations are supported. The random effects are assumed to be
normally distributed on the scale of the transformation function, the
marginal likelihood is evaluated using the Laplace approximation, and the
gradients are calculated with automatic differentiation (Tamasi & Hothorn,
2021) <doi:10.32614/RJ-2021-075>. Penalized smooth shift terms can be
defined using 'mgcv'.
Author: Balint Tamasi [aut, cre] ,
Torsten Hothorn [ctb]
Maintainer: Balint Tamasi <balint.tamasi+tramME@gmail.com>
Diff between tramME versions 1.0.5 dated 2023-06-29 and 1.0.6 dated 2024-07-02
DESCRIPTION | 20 +-- MD5 | 96 +++++++------- NAMESPACE | 9 + NEWS.md | 25 +++ R/LmME.R | 98 ++++++++++----- R/SurvregME.R | 39 ++++-- R/confband.R |only R/methods.R | 123 +++++++++++++----- R/models.R | 188 ++++++++++++++++++++++++----- R/predict.R | 58 +++++--- R/smooth.R | 1 R/terms.R | 14 +- R/tramTMB.R | 34 +++-- R/util.R | 2 build/vignette.rds |binary inst/doc/RJ-2021-075.R | 67 ++++++++-- inst/doc/RJ-2021-075.Rnw | 72 ++++++++--- inst/doc/RJ-2021-075.pdf |binary inst/doc/mixed-effects-additive-models.pdf |binary man/BoxCoxME.Rd | 46 +++++-- man/ColrME.Rd | 47 +++++-- man/CoxphME.Rd | 49 +++++-- man/LehmannME.Rd | 47 +++++-- man/LmME.Rd | 67 ++++++++-- man/PolrME.Rd | 50 +++++-- man/SurvregME.Rd | 61 ++++++--- man/VarCorr.LmME.Rd | 8 - man/VarCorr.tramME.Rd | 13 +- man/coef.LmME.Rd | 10 + man/coef.SurvregME.Rd | 2 man/coef.tramME.Rd | 23 ++- man/confband.tramME.Rd |only man/confint.LmME.Rd | 6 man/confint.tramME.Rd | 2 man/model.frame.tramME.Rd | 4 man/model.matrix.tramME.Rd | 2 man/optim_control.Rd | 11 + man/plot.tramME.Rd | 22 +-- man/plot_ci.Rd |only man/predict.tramME.Rd | 22 +-- man/ranef.LmME.Rd | 4 man/tramME.Rd | 33 +++-- man/varcov.LmME.Rd | 2 man/vcov.LmME.Rd | 6 man/vcov.tramME.Rd | 8 - src/tramTMB.cpp | 9 - tests/basics.R | 13 ++ tests/confband.R |only tests/predict.R | 4 tests/smooth.R | 13 ++ vignettes/RJ-2021-075.Rnw | 72 ++++++++--- 51 files changed, 1109 insertions(+), 393 deletions(-)
Title: Raw Accelerometer Data Analysis
Description: A tool to process and analyse data collected with wearable raw acceleration sensors as described in Migueles and colleagues (JMPB 2019), and van Hees and colleagues (JApplPhysiol 2014; PLoSONE 2015). The package has been developed and tested for binary data from 'GENEActiv' <https://activinsights.com/>, binary (.gt3x) and .csv-export data from 'Actigraph' <https://theactigraph.com> devices, and binary (.cwa) and .csv-export data from 'Axivity' <https://axivity.com>. These devices are currently widely used in research on human daily physical activity. Further, the package can handle accelerometer data file from any other sensor brand providing that the data is stored in csv format. Also the package allows for external function embedding.
Author: Vincent T van Hees [aut, cre],
Jairo H Migueles [aut] ,
Severine Sabia [ctb],
Matthew R Patterson [ctb],
Zhou Fang [ctb],
Joe Heywood [ctb],
Joan Capdevila Pujol [ctb],
Lena Kushleyeva [ctb],
Mathilde Chen [ctb],
Manasa Yerramalla [ctb],
Patrick Bos [...truncated...]
Maintainer: Vincent T van Hees <v.vanhees@accelting.com>
Diff between GGIR versions 3.1-1 dated 2024-06-04 and 3.1-2 dated 2024-07-02
GGIR-3.1-1/GGIR/inst/doc/CutPoints.R |only GGIR-3.1-1/GGIR/inst/doc/HouseHoldCoanalysis.R |only GGIR-3.1-1/GGIR/inst/doc/HouseHoldCoanalysis.Rmd |only GGIR-3.1-1/GGIR/inst/doc/HouseHoldCoanalysis.html |only GGIR-3.1-1/GGIR/inst/doc/chapter0_Contributing.R |only GGIR-3.1-1/GGIR/inst/doc/chapter0_Contributing.Rmd |only GGIR-3.1-1/GGIR/inst/doc/chapter0_Contributing.html |only GGIR-3.1-1/GGIR/inst/doc/chapter0_GetStarted.R |only GGIR-3.1-1/GGIR/inst/doc/chapter0_GetStarted.Rmd |only GGIR-3.1-1/GGIR/inst/doc/chapter0_GetStarted.html |only GGIR-3.1-1/GGIR/inst/doc/chapter0_Installation.R |only GGIR-3.1-1/GGIR/inst/doc/chapter0_Installation.Rmd |only GGIR-3.1-1/GGIR/inst/doc/chapter0_Installation.html |only GGIR-3.1-1/GGIR/inst/doc/chapter0_Support.Rmd |only GGIR-3.1-1/GGIR/inst/doc/chapter0_Support.html |only GGIR-3.1-1/GGIR/inst/doc/chapter10_CircadianRhythms.R |only GGIR-3.1-1/GGIR/inst/doc/chapter10_CircadianRhythms.Rmd |only GGIR-3.1-1/GGIR/inst/doc/chapter10_CircadianRhythms.html |only GGIR-3.1-1/GGIR/inst/doc/chapter1_WhatIsGGIR.R |only GGIR-3.1-1/GGIR/inst/doc/chapter1_WhatIsGGIR.Rmd |only GGIR-3.1-1/GGIR/inst/doc/chapter1_WhatIsGGIR.html |only GGIR-3.1-1/GGIR/inst/doc/chapter2_Pipeline.R |only GGIR-3.1-1/GGIR/inst/doc/chapter2_Pipeline.Rmd |only GGIR-3.1-1/GGIR/inst/doc/chapter2_Pipeline.html |only GGIR-3.1-1/GGIR/inst/doc/chapter3_QualityAssessment.R |only GGIR-3.1-1/GGIR/inst/doc/chapter3_QualityAssessment.Rmd |only GGIR-3.1-1/GGIR/inst/doc/chapter3_QualityAssessment.html |only GGIR-3.1-1/GGIR/inst/doc/chapter4_AccMetrics.R |only GGIR-3.1-1/GGIR/inst/doc/chapter4_AccMetrics.Rmd |only GGIR-3.1-1/GGIR/inst/doc/chapter4_AccMetrics.html |only GGIR-3.1-1/GGIR/inst/doc/chapter5_StudyProtocol.R |only GGIR-3.1-1/GGIR/inst/doc/chapter5_StudyProtocol.Rmd |only GGIR-3.1-1/GGIR/inst/doc/chapter5_StudyProtocol.html |only GGIR-3.1-1/GGIR/inst/doc/chapter6_DataImputation.R |only GGIR-3.1-1/GGIR/inst/doc/chapter6_DataImputation.Rmd |only GGIR-3.1-1/GGIR/inst/doc/chapter6_DataImputation.html |only GGIR-3.1-1/GGIR/inst/doc/chapter7_DescribingDataWithoutKnowingSleep.R |only GGIR-3.1-1/GGIR/inst/doc/chapter7_DescribingDataWithoutKnowingSleep.Rmd |only GGIR-3.1-1/GGIR/inst/doc/chapter7_DescribingDataWithoutKnowingSleep.html |only GGIR-3.1-1/GGIR/inst/doc/chapter8_24hTimeUseAnalysis.R |only GGIR-3.1-1/GGIR/inst/doc/chapter8_24hTimeUseAnalysis.Rmd |only GGIR-3.1-1/GGIR/inst/doc/chapter8_24hTimeUseAnalysis.html |only GGIR-3.1-1/GGIR/inst/doc/chapter9_PhysicalBehavioursAnalysis.R |only GGIR-3.1-1/GGIR/inst/doc/chapter9_PhysicalBehavioursAnalysis.Rmd |only GGIR-3.1-1/GGIR/inst/doc/chapter9_PhysicalBehavioursAnalysis.html |only GGIR-3.1-1/GGIR/vignettes/HouseHoldCoanalysis.Rmd |only GGIR-3.1-1/GGIR/vignettes/chapter0_Contributing.Rmd |only GGIR-3.1-1/GGIR/vignettes/chapter0_GetStarted.Rmd |only GGIR-3.1-1/GGIR/vignettes/chapter0_Installation.Rmd |only GGIR-3.1-1/GGIR/vignettes/chapter0_Support.Rmd |only GGIR-3.1-1/GGIR/vignettes/chapter10_CircadianRhythms.Rmd |only GGIR-3.1-1/GGIR/vignettes/chapter1_WhatIsGGIR.Rmd |only GGIR-3.1-1/GGIR/vignettes/chapter2_Pipeline.Rmd |only GGIR-3.1-1/GGIR/vignettes/chapter3_QualityAssessment.Rmd |only GGIR-3.1-1/GGIR/vignettes/chapter4_AccMetrics.Rmd |only GGIR-3.1-1/GGIR/vignettes/chapter5_StudyProtocol.Rmd |only GGIR-3.1-1/GGIR/vignettes/chapter6_DataImputation.Rmd |only GGIR-3.1-1/GGIR/vignettes/chapter7_DescribingDataWithoutKnowingSleep.Rmd |only GGIR-3.1-1/GGIR/vignettes/chapter8_24hTimeUseAnalysis.Rmd |only GGIR-3.1-1/GGIR/vignettes/chapter9_PhysicalBehavioursAnalysis.Rmd |only GGIR-3.1-2/GGIR/DESCRIPTION | 8 GGIR-3.1-2/GGIR/MD5 | 157 GGIR-3.1-2/GGIR/NEWS.md | 31 GGIR-3.1-2/GGIR/R/GGIR.R | 2 GGIR-3.1-2/GGIR/R/HASIB.R | 13 GGIR-3.1-2/GGIR/R/HASPT.R | 52 GGIR-3.1-2/GGIR/R/appendRecords.R | 1 GGIR-3.1-2/GGIR/R/checkMilestoneFolders.R |only GGIR-3.1-2/GGIR/R/check_params.R | 15 GGIR-3.1-2/GGIR/R/convertEpochData.R | 3 GGIR-3.1-2/GGIR/R/g.getmeta.R | 6 GGIR-3.1-2/GGIR/R/g.imputeTimegaps.R | 4 GGIR-3.1-2/GGIR/R/g.part2.R | 1 GGIR-3.1-2/GGIR/R/g.part3.R | 10 GGIR-3.1-2/GGIR/R/g.part4.R | 103 GGIR-3.1-2/GGIR/R/g.part5.R | 4 GGIR-3.1-2/GGIR/R/g.part5.addfirstwake.R | 8 GGIR-3.1-2/GGIR/R/g.part5_analyseSegment.R | 2 GGIR-3.1-2/GGIR/R/g.plot5.R | 20 GGIR-3.1-2/GGIR/R/g.report.part4.R | 5 GGIR-3.1-2/GGIR/R/g.report.part5.R | 2 GGIR-3.1-2/GGIR/R/g.report.part5_dictionary.R | 4 GGIR-3.1-2/GGIR/R/g.sib.det.R | 66 GGIR-3.1-2/GGIR/build/vignette.rds |binary GGIR-3.1-2/GGIR/inst/doc/CutPoints.Rmd | 8 GGIR-3.1-2/GGIR/inst/doc/CutPoints.html | 10 GGIR-3.1-2/GGIR/inst/doc/ExternalFunction.Rmd | 3 GGIR-3.1-2/GGIR/inst/doc/ExternalFunction.html | 9 GGIR-3.1-2/GGIR/inst/doc/GGIR.R | 30 GGIR-3.1-2/GGIR/inst/doc/GGIR.Rmd | 1171 ---- GGIR-3.1-2/GGIR/inst/doc/GGIR.html | 2392 ---------- GGIR-3.1-2/GGIR/inst/doc/GGIRParameters.html | 19 GGIR-3.1-2/GGIR/inst/doc/GGIRoutput.R |only GGIR-3.1-2/GGIR/inst/doc/GGIRoutput.Rmd |only 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deletions(-)
Title: Fast Implementation of the Diffusion Decision Model
Description: Provides the probability density function (PDF), cumulative
distribution function (CDF), the first-order and second-order partial
derivatives of the PDF, and a fitting function for the diffusion decision
model (DDM; e.g.,
Ratcliff & McKoon, 2008, <doi:10.1162/neco.2008.12-06-420>) with across-trial
variability in the drift rate. Because the PDF, its partial derivatives, and
the CDF of the DDM both contain an infinite sum, they need to be approximated.
'fddm' implements all published approximations
(Navarro & Fuss, 2009, <doi:10.1016/j.jmp.2009.02.003>;
Gondan, Blurton, & Kesselmeier, 2014, <doi:10.1016/j.jmp.2014.05.002>;
Blurton, Kesselmeier, & Gondan, 2017, <doi:10.1016/j.jmp.2016.11.003>;
Hartmann & Klauer, 2021, <doi:10.1016/j.jmp.2021.102550>) plus
new approximations. All approximations are implemented purely in 'C++'
providing faster speed than existing packages.
Author: Kendal B. Foster [aut],
Henrik Singmann [ctb, cre] ,
Achim Zeileis [ctb]
Maintainer: Henrik Singmann <singmann@gmail.com>
Diff between fddm versions 1.0-1 dated 2024-06-26 and 1.0-2 dated 2024-07-02
DESCRIPTION | 6 MD5 | 28 - NEWS.md | 2 R/ddm.R | 6 inst/doc/benchmark.R | 56 +- inst/doc/benchmark.Rmd | 56 +- inst/doc/benchmark.html | 716 ++++++++++++++--------------- inst/doc/example.html | 120 ++-- inst/doc/math.html | 6 inst/doc/pfddm.html | 6 inst/doc/validity.html | 14 inst/extdata/dfddm_density/bm_fit.Rds |binary man/ddm.Rd | 6 src/helper_functions/fitting/sum_funcs.cpp | 8 vignettes/benchmark.Rmd | 56 +- 15 files changed, 574 insertions(+), 512 deletions(-)
Title: Fast General Purpose Date/Time Converter
Description: Fast general purpose date/time converter using 'Rust'. The package implements date time, date and epoch time parser for heterogeneous vectors of dates.
Author: David Schoch [aut, cre] ,
Rollie Ma [ctb, cph] ,
Brandon W. Maister [ctb, cph] ,
Dirkjan Ochtman [ctb, cph] ,
Seonghoon Kang [ctb, cph] ,
Eric Sheppard [ctb, cph] ,
Paul Dicker [ctb, cph]
Maintainer: David Schoch <david@schochastics.net>
Diff between timeless versions 0.2.1 dated 2024-03-31 and 0.2.2 dated 2024-07-02
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 4 ++++ src/Makevars | 3 ++- src/Makevars.win | 3 ++- src/rust/Cargo.lock | 12 ++++++------ src/rust/Cargo.toml | 2 +- 7 files changed, 24 insertions(+), 18 deletions(-)
Title: Summarize CRAN Check Results in the Terminal
Description: The CRAN check results and where your package stands in the
CRAN submission queue in your R terminal.
Author: Francois Michonneau [aut, cre],
Ben Bolker [ctb]
Maintainer: Francois Michonneau <francois.michonneau@gmail.com>
Diff between foghorn versions 1.5.2 dated 2024-02-02 and 1.6.0 dated 2024-07-02
DESCRIPTION | 15 - MD5 | 39 ++-- NAMESPACE | 16 - NEWS.md | 65 ++++-- R/cran_details.R | 14 - R/cran_files.R | 26 +- R/cran_results.R | 52 ++++- R/deadline.R |only R/defaults.R | 27 +- R/foghorn.R | 33 ++- R/utils.R | 22 ++ README.md | 195 ++++++++++++++------ build/vignette.rds |binary inst/doc/foghorn.Rmd | 190 ++++++++++++++----- inst/doc/foghorn.html | 315 ++++++++++++++++++++------------- man/cran_details.Rd | 16 + man/cran_results.Rd | 36 +++ tests/testthat/test-foghorn.R | 175 ++++++++++++++++-- tests/testthat/test-n_cran_platforms.R | 2 vignettes/foghorn.Rmd | 190 ++++++++++++++----- vignettes/foghorn.Rmd.orig | 4 21 files changed, 1021 insertions(+), 411 deletions(-)
Title: B-Spline Interpolation and Regression
Description: Build and use B-splines for interpolation and regression.
In case of regression, equality constraints as well as monotonicity
and/or positivity of B-spline weights can be imposed. Moreover,
knot positions (not only spline weights) can be part of
optimized parameters too. For this end, 'bspline' is able to calculate
Jacobian of basis vectors as function of knot positions. User is provided with
functions calculating spline values at arbitrary points. These
functions can be differentiated and integrated to obtain B-splines calculating
derivatives/integrals at any point. B-splines of this package can
simultaneously operate on a series of curves sharing the same set of
knots. 'bspline' is written with concern about computing
performance that's why the basis and Jacobian calculation is implemented in C++.
The rest is implemented in R but without notable impact on computing speed.
Author: Serguei Sokol <sokol@insa-toulouse.fr>
Maintainer: Serguei Sokol <sokol@insa-toulouse.fr>
Diff between bspline versions 2.2 dated 2023-05-26 and 2.2.2 dated 2024-07-02
DESCRIPTION | 8 ++++---- MD5 | 23 ++++++++++++----------- NAMESPACE | 1 + NEWS.md | 14 ++++++++++++++ R/RcppExports.R | 27 ++++++++++++++++++++++++++- R/bspline.R | 22 +++++++++++----------- inst/unitTests/runit.bspline.R | 10 ++++++++++ man/bcurve.Rd | 2 +- man/bsc.Rd | 2 +- man/bsp.Rd | 2 +- man/bspline.Rd | 27 ++++++++++++++++++--------- man/pbsc.Rd |only src/bspline.cpp | 36 ++++++++++++++++++++++++++++++------ 13 files changed, 129 insertions(+), 45 deletions(-)
Title: Diagnostics for OMOP Common Data Model Drug Records
Description: Ingredient specific diagnostics for drug exposure records in the Observational Medical Outcomes Partnership (OMOP) common data model.
Author: Ger Inberg [aut, cre] ,
Edward Burn [aut] ,
Theresa Burkard [aut] ,
Yuchen Guo [ctb] ,
Marti Catala [ctb] ,
Mike Du [ctb] ,
Xintong Li [ctb] ,
Ross Williams [ctb] ,
Erasmus MC [cph]
Maintainer: Ger Inberg <g.inberg@erasmusmc.nl>
Diff between DrugExposureDiagnostics versions 1.0.5 dated 2024-06-12 and 1.0.6 dated 2024-07-02
DESCRIPTION | 6 +-- MD5 | 32 ++++++++++---------- NEWS.md | 3 + R/mockDrugExposure.R | 30 +++++++++--------- R/summariseChecks.R | 11 +++--- inst/doc/DiagnosticsSummary.Rmd | 2 - inst/doc/DiagnosticsSummary.html | 4 +- inst/doc/DrugDose.html | 2 - inst/doc/DrugSig.html | 2 - inst/doc/DrugSourceConcepts.html | 2 - inst/doc/DrugTypes.html | 2 - inst/doc/IntroductionToDrugExposureDiagnostics.html | 6 +-- inst/doc/Missingness.html | 2 - inst/doc/Routes.html | 2 - inst/doc/VerbatimEndDate.html | 2 - tests/testthat/test-SummariseChecks.R | 30 ++++++++++++++++++ vignettes/DiagnosticsSummary.Rmd | 2 - 17 files changed, 87 insertions(+), 53 deletions(-)
More information about DrugExposureDiagnostics at CRAN
Permanent link
Title: Time Series Analysis Library
Description: The library allows to perform a multivariate time series
classification based on the use of Discrete Wavelet Transform for
feature extraction, a step wise discriminant to select the most
relevant features and finally, the use of a linear or quadratic
discriminant for classification. Note that all these steps can be done
separately which allows to implement new steps. Velasco, I., Sipols,
A., de Blas, C. S., Pastor, L., & Bayona, S. (2023)
<doi:10.1186/S12938-023-01079-X>. Percival, D. B., & Walden, A. T.
(2000,ISBN:0521640687). Maharaj, E. A., & Alonso, A. M. (2014)
<doi:10.1016/j.csda.2013.09.006>.
Author: Ivan Velasco [aut, cre, cph]
Maintainer: Ivan Velasco <ivan.velasco@urjc.es>
Diff between TSEAL versions 0.1.2 dated 2024-05-01 and 0.1.3 dated 2024-07-02
TSEAL-0.1.2/TSEAL/man/KFCV.WaveAnalysis.Rd |only TSEAL-0.1.2/TSEAL/man/LOOCV.WaveAnalysis.Rd |only TSEAL-0.1.2/TSEAL/man/classify.WaveAnalysis.Rd |only TSEAL-0.1.2/TSEAL/man/trainModel.WaveAnalysis.Rd |only TSEAL-0.1.3/TSEAL/DESCRIPTION | 23 +- TSEAL-0.1.3/TSEAL/MD5 | 50 ++-- TSEAL-0.1.3/TSEAL/NAMESPACE | 12 - TSEAL-0.1.3/TSEAL/R/AuxFuncts.R | 70 +++--- TSEAL-0.1.3/TSEAL/R/Discriminant.R | 194 +++++++++--------- TSEAL-0.1.3/TSEAL/R/MultiWaveAnalisysParallel.R | 42 +-- TSEAL-0.1.3/TSEAL/R/StepDiscrim.R | 82 +++---- TSEAL-0.1.3/TSEAL/man/KFCV.MultiWaveAnalysis.Rd |only TSEAL-0.1.3/TSEAL/man/KFCV.Rd | 4 TSEAL-0.1.3/TSEAL/man/KFCV.array.Rd | 14 - TSEAL-0.1.3/TSEAL/man/LOOCV.MultiWaveAnalysis.Rd |only TSEAL-0.1.3/TSEAL/man/LOOCV.Rd | 4 TSEAL-0.1.3/TSEAL/man/LOOCV.array.Rd | 14 - TSEAL-0.1.3/TSEAL/man/MultiWaveAnalysis.Rd | 8 TSEAL-0.1.3/TSEAL/man/SameDiscrim.Rd | 6 TSEAL-0.1.3/TSEAL/man/StepDiscrim.Rd | 8 TSEAL-0.1.3/TSEAL/man/StepDiscrimV.Rd | 8 TSEAL-0.1.3/TSEAL/man/classify.MultiWaveAnalysis.Rd |only TSEAL-0.1.3/TSEAL/man/classify.Rd | 6 TSEAL-0.1.3/TSEAL/man/extractSubset.Rd | 10 TSEAL-0.1.3/TSEAL/man/generateStepDiscrim.Rd | 18 - TSEAL-0.1.3/TSEAL/man/testFilters.Rd | 12 - TSEAL-0.1.3/TSEAL/man/testModel.Rd | 14 - TSEAL-0.1.3/TSEAL/man/trainModel.MultiWaveAnalysis.Rd |only TSEAL-0.1.3/TSEAL/man/trainModel.Rd | 4 TSEAL-0.1.3/TSEAL/man/trainModel.array.Rd | 10 30 files changed, 307 insertions(+), 306 deletions(-)
Title: Calibration Performance
Description: Plots calibration curves and computes statistics for assessing calibration performance. See De Cock Campo (2023) <doi:10.48550/arXiv.2309.08559> and Van Calster et al. (2016) <doi:10.1016/j.jclinepi.2015.12.005>.
Author: De Cock Bavo [aut, cre],
Nieboer Daan [aut],
Van Calster Ben [aut],
Steyerberg Ewout [aut],
Vergouwe Yvonne [aut]
Maintainer: De Cock Bavo <bavo.decock@kuleuven.be>
Diff between CalibrationCurves versions 2.0.2 dated 2024-06-19 and 2.0.3 dated 2024-07-02
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/helperFunctions.R | 2 +- README.md | 2 +- inst/CITATION | 4 ++-- inst/doc/CalibrationCurves.html | 4 ++-- man/grapes-open-curly-close-grapes.Rd | 2 +- 7 files changed, 16 insertions(+), 16 deletions(-)
More information about CalibrationCurves at CRAN
Permanent link
Title: The 'Seven Bridges Platform' API Client
Description: R client and utilities for 'Seven Bridges Platform' API, from 'Cancer Genomics Cloud'
to other 'Seven Bridges' supported platforms. API documentation is hosted publicly
at <https://docs.sevenbridges.com/docs/the-api>.
Author: Marko Trifunovic [aut, cre],
Marija Gacic [aut],
Vladimir Obucina [aut],
Velsera [cph, fnd]
Maintainer: Marko Trifunovic <marko.trifunovic@velsera.com>
Diff between sevenbridges2 versions 0.1.0 dated 2024-02-03 and 0.2.0 dated 2024-07-02
DESCRIPTION | 19 - MD5 | 139 +++++------ NAMESPACE | 6 NEWS.md | 24 + R/api-http.R | 2 R/api-utils.R | 37 ++- R/class-VolumeFile.R | 4 R/class-VolumePrefix.R | 4 R/class-app.R | 16 - R/class-apps.R | 10 R/class-auth.R | 38 +-- R/class-billing.R | 12 R/class-collection.R | 10 R/class-export.R | 23 + R/class-exports-utils.R |only R/class-exports.R | 303 ++++++++++++++++++++++++ R/class-file.R | 51 +--- R/class-files.R | 271 +++++++++++++++++++++- R/class-import.R | 9 R/class-imports-utils.R |only R/class-imports.R | 354 ++++++++++++++++++++++++++--- R/class-item.R | 4 R/class-project.R | 63 +---- R/class-projects.R | 4 R/class-resource.R | 12 R/class-task.R | 55 +--- R/class-tasks.R | 71 ++++- R/class-upload.R | 42 +-- R/class-user.R | 11 R/class-volume.R | 57 +--- R/class-volumecontent-collection.R | 4 R/class-volumes.R | 26 -- R/utils-validations.R | 157 +++++++++++- build/vignette.rds |binary inst/WORDLIST | 1 inst/doc/Authentication_and_Billing.R | 2 inst/doc/Authentication_and_Billing.html | 16 - inst/doc/Files_upload_and_Volumes.R | 179 ++++++++++++++ inst/doc/Files_upload_and_Volumes.Rmd | 295 +++++++++++++++++++++++- inst/doc/Files_upload_and_Volumes.html | 297 +++++++++++++++++++++++- inst/doc/Projects_and_Tasks_execution.R | 60 ++++ inst/doc/Projects_and_Tasks_execution.Rmd | 174 ++++++++++++++ inst/doc/Projects_and_Tasks_execution.html | 184 ++++++++++++++- inst/doc/quickstart.R | 2 inst/doc/quickstart.html | 16 - man/Apps.Rd | 2 man/Auth.Rd | 2 man/Collection.Rd | 2 man/Exports.Rd | 242 +++++++++++++++++++ man/Files.Rd | 249 ++++++++++++++++++++ man/Imports.Rd | 250 +++++++++++++++++++- man/Task.Rd | 4 man/Tasks.Rd | 58 ++++ man/Upload.Rd | 2 man/prepare_items_for_bulk_export.Rd |only man/prepare_items_for_bulk_import.Rd |only tests/testthat/_snaps/class-billing.md | 20 - tests/testthat/_snaps/utils-validations.md |only tests/testthat/setup.R | 62 +++++ tests/testthat/test-api-utils.R | 57 +++- tests/testthat/test-class-exports-utils.R |only tests/testthat/test-class-exports.R | 159 ++++++++++++- tests/testthat/test-class-file.R | 6 tests/testthat/test-class-files.R | 68 +++++ tests/testthat/test-class-imports-utils.R |only tests/testthat/test-class-imports.R | 268 ++++++++++++++++++++- tests/testthat/test-class-project.R | 2 tests/testthat/test-class-task.R | 2 tests/testthat/test-class-tasks.R | 18 + tests/testthat/test-class-volume.R | 4 tests/testthat/test-class-volumes.R | 2 tests/testthat/test-utils-validations.R | 129 ++++++++++ vignettes/Files_upload_and_Volumes.Rmd | 295 +++++++++++++++++++++++- vignettes/Projects_and_Tasks_execution.Rmd | 174 ++++++++++++++ 74 files changed, 4541 insertions(+), 600 deletions(-)
Title: Access and Analyze Data from the Red Book of Endemic Plants of
Peru
Description: Provides access to and analysis of data from "The Red Book of Endemic Plants of Peru" (León, B., Roque, J., Ulloa, C., Jorgensen, P.M., Pitman, N., Cano, A. 2006) <doi:10.15381/rpb.v13i2.1782>. This package offers comprehensive taxonomic, geographic, and conservation information about Peru's endemic plant species. It includes functions to verify species inclusion, obtain updated taxonomic details, and explore the dataset.
Author: Paul E. Santos Andrade [aut, cre]
,
Lucely L. Vilca Bustamante [aut]
Maintainer: Paul E. Santos Andrade <paulefrens@gmail.com>
Diff between redbookperu versions 0.0.2 dated 2023-08-27 and 0.0.3 dated 2024-07-02
redbookperu-0.0.2/redbookperu/R/redbookperu_data.R |only redbookperu-0.0.2/redbookperu/R/redbookperu_names.R |only redbookperu-0.0.2/redbookperu/R/reg_peru.R |only redbookperu-0.0.2/redbookperu/data/redbook_taxonomy.rda |only redbookperu-0.0.2/redbookperu/data/reg_peru.rda |only redbookperu-0.0.2/redbookperu/man/check_redbook.Rd |only redbookperu-0.0.2/redbookperu/man/redbook_taxonomy.Rd |only redbookperu-0.0.2/redbookperu/man/reg_peru.Rd |only redbookperu-0.0.3/redbookperu/DESCRIPTION | 34 - redbookperu-0.0.3/redbookperu/LICENSE | 4 redbookperu-0.0.3/redbookperu/MD5 | 55 +- redbookperu-0.0.3/redbookperu/NAMESPACE | 8 redbookperu-0.0.3/redbookperu/R/check_redbook.R | 221 ++++------ redbookperu-0.0.3/redbookperu/R/funciones_defensivas.R | 174 ++++++- redbookperu-0.0.3/redbookperu/R/genus_search.R |only redbookperu-0.0.3/redbookperu/R/get_redbook_data.R | 79 +-- redbookperu-0.0.3/redbookperu/R/group_search.R |only redbookperu-0.0.3/redbookperu/R/internal.R | 4 redbookperu-0.0.3/redbookperu/R/match_algorithm.R |only redbookperu-0.0.3/redbookperu/R/redbook_data.R |only redbookperu-0.0.3/redbookperu/R/search_redbook.R |only redbookperu-0.0.3/redbookperu/R/species_class.R |only redbookperu-0.0.3/redbookperu/R/sysdata.rda |binary redbookperu-0.0.3/redbookperu/README.md | 162 +++---- redbookperu-0.0.3/redbookperu/data/redbook_position.rda |only redbookperu-0.0.3/redbookperu/data/redbook_sp_data.rda |only redbookperu-0.0.3/redbookperu/data/redbook_sps_class.rda |only redbookperu-0.0.3/redbookperu/data/redbook_tab.rda |binary redbookperu-0.0.3/redbookperu/inst/CITATION | 2 redbookperu-0.0.3/redbookperu/man/check_redbooklist.Rd |only redbookperu-0.0.3/redbookperu/man/dot-match_algorithm.Rd |only redbookperu-0.0.3/redbookperu/man/get_redbook_data.Rd | 100 ++-- redbookperu-0.0.3/redbookperu/man/redbook_position.Rd |only redbookperu-0.0.3/redbookperu/man/redbook_sp_data.Rd |only redbookperu-0.0.3/redbookperu/man/redbook_sps_class.Rd |only redbookperu-0.0.3/redbookperu/man/redbook_tab.Rd | 93 +--- redbookperu-0.0.3/redbookperu/man/search_redbook.Rd |only redbookperu-0.0.3/redbookperu/tests/testthat.R | 24 - redbookperu-0.0.3/redbookperu/tests/testthat/test_check_redbook.R | 37 - redbookperu-0.0.3/redbookperu/tests/testthat/test_data_check.R | 17 40 files changed, 560 insertions(+), 454 deletions(-)
Title: Bayesian Recurrent Events Analysis
Description: Functions to produce MCMC samples for posterior inference in semiparametric Bayesian discrete time competing risks recurrent events models and multistate models.
Author: Adam J King
Maintainer: Adam J King <king@cpp.edu>
Diff between brea versions 0.2.0 dated 2017-10-08 and 0.3.0 dated 2024-07-02
DESCRIPTION | 12 ++++++------ MD5 | 10 ++++++---- NAMESPACE | 2 +- R/brea_mcmc_ms.R |only R/check_set_predictors.R | 22 +++++++++++----------- R/check_set_priors.R | 4 ++-- man/brea_mcmc_ms.Rd |only 7 files changed, 26 insertions(+), 24 deletions(-)
Title: Ab Initio Uncertainty Quantification
Description: Uncertainty quantification and inverse estimation by probabilistic generative models from the beginning of the data analysis. An example is a Fourier basis method for inverse estimation in scattering analysis of microscopy videos. It does not require specifying a certain range of Fourier bases and it substantially reduces computational cost via the generalized Schur algorithm. See the reference: Mengyang Gu, Yue He, Xubo Liu and Yimin Luo (2023), <doi:10.48550/arXiv.2309.02468>.
Author: Yue He [aut],
Xubo Liu [aut],
Mengyang Gu [aut, cre]
Maintainer: Mengyang Gu <mengyang@pstat.ucsb.edu>
Diff between AIUQ versions 0.5.2 dated 2024-05-04 and 0.5.3 dated 2024-07-02
CHANGELOG | 6 ++++++ DESCRIPTION | 10 ++++++---- MD5 | 22 ++++++++++++++-------- R/AIUQ-package.R | 1 + R/SAM.R | 16 +++++++++++++++- R/functions.R | 7 ++++--- build/partial.rdb |binary build/vignette.rds |only inst |only man/AIUQ-package.Rd |only man/get_dqt.Rd | 2 ++ man/get_isf.Rd | 2 ++ vignettes |only 13 files changed, 50 insertions(+), 16 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-02-23 9.1.3
2022-05-17 9.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-02-24 3.5.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-12-11 0.2.6.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-10-13 1.4.5
2023-06-24 1.4.4
2023-01-09 1.4.1
2022-11-28 1.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-01 0.1.7
2020-02-28 0.1.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-01-08 0.5.0
2023-11-18 0.4.2
2023-07-17 0.4.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-09-11 0.2.4
2022-06-22 0.2.3
2022-05-27 0.2.2
2022-05-23 0.2.1
2022-04-28 0.2.0
2021-10-29 0.1.0
Title: USGS INL Project Office Publications
Description: Contains bibliographic information for the U.S. Geological Survey
(USGS) Idaho National Laboratory (INL) Project Office.
Author: Jason C. Fisher [aut, cre] ,
Kerri C. Treinen [aut] ,
Allison R. Trcka [aut]
Maintainer: Jason C. Fisher <jfisher@usgs.gov>
Diff between inlpubs versions 1.1.1 dated 2024-02-27 and 1.1.3 dated 2024-07-02
inlpubs-1.1.1/inlpubs/R/utils.R |only inlpubs-1.1.3/inlpubs/DESCRIPTION | 21 +- inlpubs-1.1.3/inlpubs/MD5 | 52 +++-- inlpubs-1.1.3/inlpubs/NAMESPACE | 6 inlpubs-1.1.3/inlpubs/NEWS.md | 11 + inlpubs-1.1.3/inlpubs/R/add_content.R |only inlpubs-1.1.3/inlpubs/R/extract_pdf_image.R |only inlpubs-1.1.3/inlpubs/R/extract_pdf_text.R |only inlpubs-1.1.3/inlpubs/R/filter_data_list.R |only inlpubs-1.1.3/inlpubs/R/get_person.R |only inlpubs-1.1.3/inlpubs/R/make_webpages.R | 67 +++---- inlpubs-1.1.3/inlpubs/R/make_wordcloud.R | 29 +-- inlpubs-1.1.3/inlpubs/R/mine_text.R | 177 ++++++++++--------- inlpubs-1.1.3/inlpubs/R/pubs.R | 1 inlpubs-1.1.3/inlpubs/R/search_terms.R |only inlpubs-1.1.3/inlpubs/R/terms.R |only inlpubs-1.1.3/inlpubs/README.md | 58 ++---- inlpubs-1.1.3/inlpubs/build/partial.rdb |binary inlpubs-1.1.3/inlpubs/data/authors.rda |binary inlpubs-1.1.3/inlpubs/data/pubs.rda |binary inlpubs-1.1.3/inlpubs/data/terms.rda |only inlpubs-1.1.3/inlpubs/inst/REFERENCES.bib | 24 +- inlpubs-1.1.3/inlpubs/inst/extdata |only inlpubs-1.1.3/inlpubs/inst/tinytest/test_data.R |only inlpubs-1.1.3/inlpubs/inst/tinytest/test_mine_text.R | 20 -- inlpubs-1.1.3/inlpubs/man/add_content.Rd |only inlpubs-1.1.3/inlpubs/man/extract_pdf_image.Rd |only inlpubs-1.1.3/inlpubs/man/extract_pdf_text.Rd |only inlpubs-1.1.3/inlpubs/man/filter_data_list.Rd |only inlpubs-1.1.3/inlpubs/man/get_person.Rd |only inlpubs-1.1.3/inlpubs/man/make_wordcloud.Rd | 22 +- inlpubs-1.1.3/inlpubs/man/mine_text.Rd | 60 +++--- inlpubs-1.1.3/inlpubs/man/pubs.Rd | 1 inlpubs-1.1.3/inlpubs/man/rmd/JS.Rmd | 7 inlpubs-1.1.3/inlpubs/man/search_terms.Rd |only inlpubs-1.1.3/inlpubs/man/terms.Rd |only 36 files changed, 298 insertions(+), 258 deletions(-)
Title: Authoring Books and Technical Documents with R Markdown
Description: Output formats and utilities for authoring books and technical documents with R Markdown.
Author: Yihui Xie [aut, cre] ,
Christophe Dervieux [ctb] ,
JJ Allaire [ctb],
Albert Kim [ctb],
Alessandro Samuel-Rosa [ctb],
Andrzej Oles [ctb],
Atsushi Yasumoto [ctb] ,
Aust Frederik [ctb] ,
Bastiaan Quast [ctb],
Ben Marwick [ctb],
Chester Ismay [ctb],
Clif [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between bookdown versions 0.39 dated 2024-04-15 and 0.40 dated 2024-07-02
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- R/gitbook.R | 2 +- R/html.R | 18 +++++++++--------- R/latex.R | 11 ++++++----- R/render.R | 5 +++-- build/vignette.rds |binary man/gitbook.Rd | 2 +- man/html_chapters.Rd | 2 +- man/html_document2.Rd | 14 +++++++------- man/pdf_book.Rd | 11 ++++++----- man/render_book.Rd | 5 +++-- 12 files changed, 52 insertions(+), 48 deletions(-)