Title: 'Rcpp' Integration for 'CGAL'
Description: Creates a header only package to link to the 'CGAL'
(Computational Geometry Algorithms Library)
header files in 'Rcpp'. There are a variety of potential uses for
the software such as Hilbert sorting, K-D Tree nearest neighbors,
and convex hull algorithms. For more information about how to use the header files,
see the 'CGAL' documentation at <https://www.cgal.org>. Currently
downloads version 5.6.1 of the 'CGAL' header files.
Author: Eric Dunipace [aut, cre] ,
Tyler Morgan-Wall [ctb],
The CGAL Project [cph]
Maintainer: Eric Dunipace <edunipace@mail.harvard.edu>
Diff between RcppCGAL versions 5.6.3 dated 2024-04-30 and 5.6.4 dated 2024-07-04
DESCRIPTION | 8 - MD5 | 14 +- NEWS.md | 5 + README.md | 22 ++-- build/vignette.rds |binary inst/AUTHORS | 210 ++++++++++++++++++++----------------------- inst/doc/Installation.html | 4 inst/include/CGAL_zip.tar.xz |binary 8 files changed, 129 insertions(+), 134 deletions(-)
Title: Multi-Objective Matching Algorithm
Description: Matching algorithm based on network-flow structure.
Users are able to modify the emphasis on three different
optimization goals: two different distance measures and
the number of treated units left unmatched. The method is proposed by Pimentel
and Kelz (2019) <doi:10.1080/01621459.2020.1720693>.
The 'rrelaxiv' package, which provides an alternative solver for
the underlying network flow problems, carries an
academic license and is not available on CRAN, but
may be downloaded from Github at
<https://github.com/josherrickson/rrelaxiv/>.
Author: Shichao Han [cre, aut],
Samuel D. Pimentel [aut]
Maintainer: Shichao Han <schan21@berkeley.edu>
Diff between MultiObjMatch versions 0.1.3 dated 2023-11-23 and 1.0.0 dated 2024-07-04
MultiObjMatch-0.1.3/MultiObjMatch/man/compareMatching.Rd |only MultiObjMatch-0.1.3/MultiObjMatch/man/compareTables.Rd |only MultiObjMatch-0.1.3/MultiObjMatch/man/distBalMatch.Rd |only MultiObjMatch-0.1.3/MultiObjMatch/man/generateBalanceTable.Rd |only MultiObjMatch-0.1.3/MultiObjMatch/man/generatePairdistanceBalanceGraph.Rd |only MultiObjMatch-0.1.3/MultiObjMatch/man/generatePairdistanceGraph.Rd |only MultiObjMatch-0.1.3/MultiObjMatch/man/generateTVGraph.Rd |only MultiObjMatch-0.1.3/MultiObjMatch/man/getUnmatched.Rd |only MultiObjMatch-0.1.3/MultiObjMatch/man/matchedData.Rd |only MultiObjMatch-0.1.3/MultiObjMatch/man/twoDistMatch.Rd |only MultiObjMatch-1.0.0/MultiObjMatch/DESCRIPTION | 10 MultiObjMatch-1.0.0/MultiObjMatch/MD5 | 55 MultiObjMatch-1.0.0/MultiObjMatch/NAMESPACE | 40 MultiObjMatch-1.0.0/MultiObjMatch/NEWS.md | 5 MultiObjMatch-1.0.0/MultiObjMatch/R/descr_stats.R | 9 MultiObjMatch-1.0.0/MultiObjMatch/R/multiObjMatch.R | 1950 +++++++--- MultiObjMatch-1.0.0/MultiObjMatch/man/check_representative.Rd |only MultiObjMatch-1.0.0/MultiObjMatch/man/combine_match_result.Rd |only MultiObjMatch-1.0.0/MultiObjMatch/man/compare_matching.Rd |only MultiObjMatch-1.0.0/MultiObjMatch/man/compare_tables.Rd |only MultiObjMatch-1.0.0/MultiObjMatch/man/convert_index.Rd | 6 MultiObjMatch-1.0.0/MultiObjMatch/man/convert_names.Rd | 4 MultiObjMatch-1.0.0/MultiObjMatch/man/dist_bal_match.Rd |only MultiObjMatch-1.0.0/MultiObjMatch/man/filter_match_result.Rd |only MultiObjMatch-1.0.0/MultiObjMatch/man/generateRhoObj.Rd | 41 MultiObjMatch-1.0.0/MultiObjMatch/man/getPropensityScore.Rd | 4 MultiObjMatch-1.0.0/MultiObjMatch/man/get_balance_table.Rd |only MultiObjMatch-1.0.0/MultiObjMatch/man/get_five_index.Rd | 6 MultiObjMatch-1.0.0/MultiObjMatch/man/get_pairdist_balance_graph.Rd |only MultiObjMatch-1.0.0/MultiObjMatch/man/get_pairdist_graph.Rd |only MultiObjMatch-1.0.0/MultiObjMatch/man/get_rho_obj.Rd |only MultiObjMatch-1.0.0/MultiObjMatch/man/get_tv_graph.Rd |only MultiObjMatch-1.0.0/MultiObjMatch/man/get_unmatched.Rd |only MultiObjMatch-1.0.0/MultiObjMatch/man/matched_data.Rd |only MultiObjMatch-1.0.0/MultiObjMatch/man/matched_index.Rd | 2 MultiObjMatch-1.0.0/MultiObjMatch/man/summary.multiObjMatch.Rd |only MultiObjMatch-1.0.0/MultiObjMatch/man/two_dist_match.Rd |only MultiObjMatch-1.0.0/MultiObjMatch/man/visualize.Rd | 43 MultiObjMatch-1.0.0/MultiObjMatch/tests/testthat/test-distBal.R | 24 MultiObjMatch-1.0.0/MultiObjMatch/tests/testthat/test-multiObjMatch.R | 18 MultiObjMatch-1.0.0/MultiObjMatch/tests/testthat/test-twoDistMatch.R | 33 41 files changed, 1557 insertions(+), 693 deletions(-)
Title: Hotelling’s T-Squared Statistic and Ellipse
Description: Functions to calculate the Hotelling’s T-squared statistic and corresponding confidence ellipses. Provides the semi-axes of the Hotelling’s T-squared ellipses at 95% and 99% confidence levels. Enables users to obtain the coordinates in two or three dimensions at user-defined confidence levels, allowing for the construction of 2D or 3D ellipses with customized confidence levels. Bro and Smilde (2014) <DOI:10.1039/c3ay41907j>. Brereton (2016) <DOI:10.1002/cem.2763>.
Author: Christian L. Goueguel [aut, cre]
Maintainer: Christian L. Goueguel <christian.goueguel@gmail.com>
Diff between HotellingEllipse versions 1.1.0 dated 2022-06-24 and 1.2.0 dated 2024-07-04
HotellingEllipse-1.1.0/HotellingEllipse/tests/testthat/test-test_fun.R |only HotellingEllipse-1.2.0/HotellingEllipse/DESCRIPTION | 16 HotellingEllipse-1.2.0/HotellingEllipse/MD5 | 60 - HotellingEllipse-1.2.0/HotellingEllipse/NAMESPACE | 4 HotellingEllipse-1.2.0/HotellingEllipse/NEWS.md | 45 HotellingEllipse-1.2.0/HotellingEllipse/R/HotellingEllipse-package.R | 4 HotellingEllipse-1.2.0/HotellingEllipse/R/data.R | 2 HotellingEllipse-1.2.0/HotellingEllipse/R/ellipseCoord.R | 168 ++ HotellingEllipse-1.2.0/HotellingEllipse/R/ellipseParam.R | 292 +++- HotellingEllipse-1.2.0/HotellingEllipse/README.md | 238 ++- HotellingEllipse-1.2.0/HotellingEllipse/build/partial.rdb |binary HotellingEllipse-1.2.0/HotellingEllipse/build/vignette.rds |binary HotellingEllipse-1.2.0/HotellingEllipse/inst/WORDLIST | 6 HotellingEllipse-1.2.0/HotellingEllipse/inst/doc/HotellingEllipse.R | 127 +- HotellingEllipse-1.2.0/HotellingEllipse/inst/doc/HotellingEllipse.Rmd | 194 ++- HotellingEllipse-1.2.0/HotellingEllipse/inst/doc/HotellingEllipse.html | 596 +++++----- HotellingEllipse-1.2.0/HotellingEllipse/inst/figures |only HotellingEllipse-1.2.0/HotellingEllipse/inst/pkgdown.yml | 4 HotellingEllipse-1.2.0/HotellingEllipse/man/HotellingEllipse-package.Rd | 4 HotellingEllipse-1.2.0/HotellingEllipse/man/ellipseCoord.Rd | 62 - HotellingEllipse-1.2.0/HotellingEllipse/man/ellipseParam.Rd | 97 + HotellingEllipse-1.2.0/HotellingEllipse/man/figures/README-unnamed-chunk-14-1.png |binary HotellingEllipse-1.2.0/HotellingEllipse/man/figures/README-unnamed-chunk-15-1.png |binary HotellingEllipse-1.2.0/HotellingEllipse/man/figures/README-unnamed-chunk-16-1.png |binary HotellingEllipse-1.2.0/HotellingEllipse/man/figures/README-unnamed-chunk-18-1.png |binary HotellingEllipse-1.2.0/HotellingEllipse/man/figures/README-unnamed-chunk-20-1-rgl.png |only HotellingEllipse-1.2.0/HotellingEllipse/man/figures/README-unnamed-chunk-21-1-rgl.png |only HotellingEllipse-1.2.0/HotellingEllipse/man/figures/README-unnamed-chunk-21-1.png |only HotellingEllipse-1.2.0/HotellingEllipse/man/figures/README-unnamed-chunk-22-1.png |only HotellingEllipse-1.2.0/HotellingEllipse/man/figures/README-unnamed-chunk-23-1.png |only HotellingEllipse-1.2.0/HotellingEllipse/man/figures/README-unnamed-chunk-24-1.png |only HotellingEllipse-1.2.0/HotellingEllipse/man/figures/logo.png |binary HotellingEllipse-1.2.0/HotellingEllipse/man/specData.Rd | 2 HotellingEllipse-1.2.0/HotellingEllipse/tests/testthat/test-ellipseCoord.R |only HotellingEllipse-1.2.0/HotellingEllipse/tests/testthat/test-ellipseParam.R |only HotellingEllipse-1.2.0/HotellingEllipse/vignettes/HotellingEllipse.Rmd | 194 ++- 36 files changed, 1442 insertions(+), 673 deletions(-)
More information about HotellingEllipse at CRAN
Permanent link
Title: Clustering of Functional Data Based on Measures of Change
Description: Implements a three-step procedure in the spirit of Leffondre et al. (2004) to identify clusters of individual longitudinal trajectories. The procedure involves (1) computing a number of "measures of change" capturing various features of the trajectories; (2) using a Principal Component Analysis based dimension reduction algorithm to select a subset of measures and (3) using the k-means clustering algorithm to identify clusters of trajectories.
Author: Marie-Pierre Sylvestre [aut],
Laurence Boulanger [aut, cre],
Gillis Delmas Tchouangue Dinkou [ctb],
Dan Vatnik [ctb]
Maintainer: Laurence Boulanger <laurence.boulanger@umontreal.ca>
Diff between traj versions 2.1.0 dated 2024-03-28 and 2.2.0 dated 2024-07-04
DESCRIPTION | 12 +- MD5 | 40 +++---- NAMESPACE | 70 ++++++------ NEWS.md | 5 R/CalinskiHarabasz.R |only R/FirstMode.R |only R/Step1Measures.R | 163 ++++++++++++++++++++++-------- R/Step2Selection.R | 54 +++++---- R/Step3Clusters.R | 239 ++++++++++++++++++++++++++++++-------------- R/plot.trajClusters.R | 48 ++++---- README.md | 2 build/vignette.rds |binary data/trajdata.rda |binary inst/doc/traj_vignette.R | 11 -- inst/doc/traj_vignette.Rmd | 33 ++---- inst/doc/traj_vignette.html | 146 ++++++++++++-------------- man/Step1Measures.Rd | 30 ++--- man/Step2Selection.Rd | 7 + man/Step3Clusters.Rd | 68 +++++++----- man/plot.trajClusters.Rd | 9 + man/traj-package.Rd | 2 vignettes/traj_vignette.Rmd | 33 ++---- 22 files changed, 584 insertions(+), 388 deletions(-)
Title: Fast General Purpose Date/Time Converter
Description: Fast general purpose date/time converter using 'Rust'. The package implements date time, date and epoch time parser for heterogeneous vectors of dates.
Author: David Schoch [aut, cre] ,
Rollie Ma [ctb, cph] ,
Brandon W. Maister [ctb, cph] ,
Dirkjan Ochtman [ctb, cph] ,
Seonghoon Kang [ctb, cph] ,
Eric Sheppard [ctb, cph] ,
Paul Dicker [ctb, cph]
Maintainer: David Schoch <david@schochastics.net>
Diff between timeless versions 0.2.2 dated 2024-07-02 and 0.2.3 dated 2024-07-04
timeless-0.2.2/timeless/man/timeless-package.Rd |only timeless-0.2.3/timeless/DESCRIPTION | 11 ++--- timeless-0.2.3/timeless/MD5 | 17 ++++---- timeless-0.2.3/timeless/NEWS.md | 5 ++ timeless-0.2.3/timeless/R/extendr-wrappers.R | 2 timeless-0.2.3/timeless/README.md | 50 ++++++++++++------------ timeless-0.2.3/timeless/configure |only timeless-0.2.3/timeless/configure.win |only timeless-0.2.3/timeless/src/Makevars | 21 ++++++---- timeless-0.2.3/timeless/src/Makevars.win | 28 ++++++++++--- timeless-0.2.3/timeless/src/rust/src/lib.rs | 6 +- 11 files changed, 83 insertions(+), 57 deletions(-)
Title: Develop and Use Modular Health Economic Models
Description: A template model module, tools to help find model modules
derived from this template and a programming syntax to use these
modules in health economic analyses. These elements are the
foundation for a prototype software framework for developing living
and transferable models and using those models in reproducible health
economic analyses. The software framework is extended by other R
libraries. For detailed documentation about the framework and how to
use it visit <https://www.ready4-dev.com/>. For a background to the
methodological issues that the framework is attempting to help solve,
see Hamilton et al. (2024) <doi:10.1007/s40273-024-01378-8>.
Author: Matthew Hamilton [aut, cre, cph]
,
Orygen [cph, fnd],
Australian Government Research Training Program [fnd],
VicHealth [fnd],
Victoria University [fnd]
Maintainer: Matthew Hamilton <matthew.hamilton1@monash.edu>
Diff between ready4 versions 0.1.9 dated 2024-04-16 and 0.1.14 dated 2024-07-04
DESCRIPTION | 23 - MD5 | 118 ++--- NAMESPACE | 4 NEWS.md | 15 R/fn_get.R | 460 ++++++++++++++------ R/fn_make.R | 780 +++++++++++++++++++---------------- R/fn_print.R | 802 +++++++++++++++++++----------------- R/fn_update.R | 53 +- R/fn_write.R | 449 +++++++++++--------- R/grp_generics.R | 930 +++++++++++++++++++++--------------------- README.md | 65 +- build/partial.rdb |binary build/vignette.rds |binary inst/doc/V_01.R | 6 inst/doc/V_01.Rmd | 21 inst/doc/V_01.html | 64 -- inst/doc/V_02.R | 8 inst/doc/V_02.Rmd | 32 - inst/doc/V_02.html | 131 ++--- inst/doc/V_03.Rmd | 2 inst/doc/V_03.html | 4 inst/doc/V_04.R | 8 inst/doc/V_04.Rmd | 23 - inst/doc/V_04.html | 60 +- inst/doc/V_05.R | 2 inst/doc/V_05.Rmd | 22 inst/doc/V_05.html | 53 +- inst/doc/V_06.R |only inst/doc/V_06.Rmd |only inst/doc/V_06.html |only inst/doc/V_07.R |only inst/doc/V_07.Rmd |only inst/doc/V_07.html |only inst/doc/ready4.Rmd | 99 ++-- inst/doc/ready4.html | 90 ++-- man/examples/get_gracefully.R |only man/get_gracefully.Rd |only man/get_rds_from_dv.Rd | 4 man/make_datasets_tb.Rd | 2 man/make_ds_releases_tbl.Rd | 2 man/make_methods_tb.Rd | 2 man/make_modules_tb.Rd | 2 man/make_programs_tbl.Rd | 2 man/print_data.Rd | 2 man/print_methods.Rd | 2 man/print_modules.Rd | 2 man/print_packages.Rd | 5 man/procure-methods.Rd | 38 - man/ready4-package.Rd | 6 man/renewSlot-methods.Rd | 70 +-- man/write_dv_fl_to_loc.Rd | 9 man/write_ingested_dv_fl.Rd | 9 man/write_to_copy_rmds.Rd | 2 man/write_to_render_post.Rd | 2 man/write_ws.Rd | 4 tests/testthat/test-fn_get.R | 28 - tests/testthat/test-fn_make.R | 62 +- vignettes/V_01.Rmd | 21 vignettes/V_02.Rmd | 32 - vignettes/V_03.Rmd | 2 vignettes/V_04.Rmd | 23 - vignettes/V_05.Rmd | 22 vignettes/V_06.Rmd |only vignettes/V_07.Rmd |only vignettes/ready4.Rmd | 99 ++-- 65 files changed, 2653 insertions(+), 2125 deletions(-)
Title: Regularization in Cox Frailty Models
Description: Different regularization approaches for Cox Frailty Models by penalization methods are provided.
Author: Andreas Groll
Maintainer: Andreas Groll <groll@statistik.tu-dortmund.de>
Diff between PenCoxFrail versions 1.0.1 dated 2016-05-06 and 2.0.0 dated 2024-07-04
DESCRIPTION | 16 ++-- MD5 | 33 ++++++--- NAMESPACE | 30 ++++++++- R/RcppExports.R | 4 - R/coxFL.R |only R/coxFLControl.R |only R/coxlasso.R |only R/coxlassoControl.R |only R/coxridge.R |only R/cv.coxlasso.R |only R/helpers.R | 163 +++++++++++++++++++++++++++++++++++++++++++------ R/pencoxfrail.R | 18 ++--- demo/00Index | 3 demo/coxlasso-lung.r |only man/bs.spline.rd | 7 -- man/coxFL.Rd |only man/coxFLControl.rd |only man/coxlasso.rd |only man/coxlassoControl.rd |only man/coxridge.rd |only man/cv.coxlasso.rd |only man/pencoxfrail.rd | 13 +-- src/IntegrMulti.cpp | 10 ++- src/RcppExports.cpp | 27 ++++++-- 24 files changed, 255 insertions(+), 69 deletions(-)
Title: An 'Armadillo' Interface
Description: Provides function declarations and inline function definitions that
facilitate communication between R and the 'Armadillo' 'C++' library for
linear algebra and scientific computing.
Author: Mauricio Vargas Sepulveda [aut, cre]
Maintainer: Mauricio Vargas Sepulveda <m.sepulveda@mail.utoronto.ca>
Diff between cpp11armadillo versions 0.2.5 dated 2024-05-14 and 0.2.8 dated 2024-07-04
cpp11armadillo-0.2.5/cpp11armadillo/inst/rstudio/templates/project/varsityblues_small.png |only cpp11armadillo-0.2.8/cpp11armadillo/DESCRIPTION | 6 cpp11armadillo-0.2.8/cpp11armadillo/MD5 | 19 - cpp11armadillo-0.2.8/cpp11armadillo/NEWS.md | 37 ++ cpp11armadillo-0.2.8/cpp11armadillo/R/vendor.R | 4 cpp11armadillo-0.2.8/cpp11armadillo/README.md | 9 cpp11armadillo-0.2.8/cpp11armadillo/inst/include/cpp11armadillo.hpp | 1 cpp11armadillo-0.2.8/cpp11armadillo/inst/include/cpp11armadillo/matrices.hpp | 58 ++-- cpp11armadillo-0.2.8/cpp11armadillo/inst/include/cpp11armadillo/sparse_matrices.hpp |only cpp11armadillo-0.2.8/cpp11armadillo/inst/include/cpp11armadillo/vectors.hpp | 135 +++++----- cpp11armadillo-0.2.8/cpp11armadillo/inst/rstudio/templates/project/cpp11armadillo_small.png |only cpp11armadillo-0.2.8/cpp11armadillo/man/cpp_vendor.Rd | 4 12 files changed, 165 insertions(+), 108 deletions(-)
More information about cpp11armadillo at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-07-01 0.6.5
2024-04-18 0.6.4
2024-03-26 0.6.3
2024-03-15 0.6.2
2024-02-22 0.6.1
2024-02-09 0.6.0
2023-11-22 0.5.1
2023-10-24 0.5.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-06-20 0.0-6
2024-06-13 0.0-4
2024-06-12 0.0-3
2024-05-19 0.0-2
2024-05-17 0.0-1
Title: Ornstein-Uhlenbeck Models for Phylogenetic Comparative
Hypotheses
Description: Fit and compare Ornstein-Uhlenbeck models for evolution along a phylogenetic tree.
Author: Aaron A. King [aut, cre] ,
Marguerite A. Butler [ctb]
Maintainer: Aaron A. King <kingaa@umich.edu>
Diff between ouch versions 2.19 dated 2023-04-24 and 2.20 dated 2024-07-04
DESCRIPTION | 12 +- MD5 | 57 +++++------ R/anolis.R | 79 +++++++-------- R/ape2ouch.R | 40 +++---- R/as_data_frame.R | 28 ++--- R/bimac.R | 101 +++++++++----------- R/bootstrap.R | 36 +++---- R/brown.R | 140 +++++++++++++-------------- R/coef.R | 18 +-- R/geospiza.R | 37 +++---- R/glssoln.R | 48 ++++----- R/hansen.R | 242 ++++++++++++++++++++++++------------------------ R/logLik.R | 21 +--- R/ouchtree.R | 88 ++++++++--------- R/package.R | 85 ++++++++-------- R/paint.R | 66 ++++++------- R/plot.R | 72 +++++++------- R/print.R | 33 +++--- R/rmvnorm.R | 4 R/simulate.R | 34 +++--- R/summary.R | 15 +- R/update.R | 30 ++--- build |only data/anolis.ssd.rda |binary data/bimac.rda |binary data/geospiza.rda |binary man/macros/citations.Rd | 12 +- man/package.Rd | 10 + man/summary.Rd | 4 src/ouch.h | 3 30 files changed, 654 insertions(+), 661 deletions(-)
Title: Spatial Ecology Miscellaneous Methods
Description: Collection of R functions and data sets for the support of spatial ecology analyses with a focus on pre, core and post modelling analyses of species distribution, niche quantification and community assembly. Written by current and former members and collaborators of the ecospat group of Antoine Guisan, Department of Ecology and Evolution (DEE) and Institute of Earth Surface Dynamics (IDYST), University of Lausanne, Switzerland. Read Di Cola et al. (2016) <doi:10.1111/ecog.02671> for details.
Author: Olivier Broennimann [cre, aut, ctb],
Valeria Di Cola [aut, ctb],
Blaise Petitpierre [ctb],
Frank Breiner [ctb],
Daniel Scherrer [ctb],
Manuela D`Amen [ctb],
Christophe Randin [ctb],
Robin Engler [ctb],
Wim Hordijk [ctb],
Heidi Mod [ctb],
Julien Potti [...truncated...]
Maintainer: Olivier Broennimann <olivier.broennimann@unil.ch>
Diff between ecospat versions 4.1.0 dated 2024-05-24 and 4.1.1 dated 2024-07-04
DESCRIPTION | 8 ++++---- MD5 | 24 ++++++++++++------------ NEWS | 6 ++++++ R/ecospat.co_occ.R | 15 ++++++++++----- inst/doc/vignette_ecospat_package.pdf |binary man/ecospat.CCV.modeling.Rd | 4 ++++ man/ecospat.Cscore.Rd | 6 +++--- man/ecospat.ESM.EnsembleModeling.Rd | 6 +++--- man/ecospat.ESM.Modeling.Rd | 6 +++++- man/ecospat.ESM.Projection.Rd | 2 +- man/ecospat.cons_Cscore.Rd | 8 ++++---- man/ecospat.mantel.correlogram.Rd | 2 +- man/ecospat.plot.contrib.Rd | 6 +++--- 13 files changed, 56 insertions(+), 37 deletions(-)
Title: Varying Coefficient Meta-Analysis
Description: Implements functions for varying coefficient meta-analysis methods.
These methods do not assume effect size homogeneity. Subgroup effect size
comparisons, general linear effect size contrasts, and linear models of
effect sizes based on varying coefficient methods can be used to describe
effect size heterogeneity. Varying coefficient meta-analysis methods do not
require the unrealistic assumptions of the traditional fixed-effect and
random-effects meta-analysis methods.
For details see: Statistical Methods for Psychologists, Volume 5, <https://dgbonett.sites.ucsc.edu/>.
Author: Douglas G. Bonett [aut, cre],
Robert J. Calin-Jageman [ctb]
Maintainer: Douglas G. Bonett <dgbonett@ucsc.edu>
Diff between vcmeta versions 1.3.0 dated 2024-03-04 and 1.4.0 dated 2024-07-04
DESCRIPTION | 6 MD5 | 125 ++++++++------- NAMESPACE | 4 NEWS.md | 12 + R/meta_ave.R | 113 +++++++++++--- R/meta_comp.R | 109 ++++++------- R/meta_model.R | 46 +++-- R/meta_rep.R | 325 ++++++++++++++++++++++++++++++----------- R/meta_se.R | 150 +++++++++++++++--- build/partial.rdb |binary man/meta.ave.cor.gen.Rd |only man/meta.ave.gen.rc.Rd | 2 man/meta.ave.pbcor.Rd | 2 man/meta.ave.semipart.Rd | 3 man/meta.ave.stdmean.ps.Rd | 10 - man/meta.ave.stdmean2.Rd | 8 - man/meta.ave.var.Rd | 4 man/meta.lc.mean.ps.Rd | 8 - man/meta.lc.meanratio.ps.Rd | 8 - man/meta.lc.meanratio2.Rd | 2 man/meta.lc.stdmean.ps.Rd | 12 - man/meta.lm.mean.ps.Rd | 10 - man/meta.lm.meanratio.ps.Rd | 10 - man/meta.lm.semipart.Rd | 3 man/meta.lm.stdmean.ps.Rd | 14 - man/meta.lm.stdmean2.Rd | 4 man/meta.sub.cor.Rd | 12 - man/meta.sub.cronbach.Rd | 12 - man/meta.sub.gen.Rd | 117 +++++++------- man/meta.sub.pbcor.Rd | 22 +- man/meta.sub.semipart.Rd | 11 - man/meta.sub.spear.Rd | 11 - man/replicate.cor.Rd | 6 man/replicate.cor.gen.Rd |only man/replicate.gen.Rd | 6 man/replicate.mean.ps.Rd | 28 +-- man/replicate.mean1.Rd | 6 man/replicate.mean2.Rd | 3 man/replicate.prop.ps.Rd | 128 ++++++++-------- man/replicate.prop1.Rd | 5 man/replicate.prop2.Rd | 5 man/replicate.ratio.prop2.Rd | 132 ++++++++-------- man/replicate.stdmean.ps.Rd | 22 +- man/replicate.stdmean2.Rd | 20 +- man/se.ave.cor.nonover.Rd | 2 man/se.ave.cor.over.Rd | 2 man/se.biphi.Rd | 4 man/se.bscor.Rd |only man/se.cohen.Rd | 86 +++++----- man/se.cor.Rd | 4 man/se.mean.ps.Rd | 2 man/se.mean2.Rd | 2 man/se.meanratio.ps.Rd | 2 man/se.meanratio2.Rd | 2 man/se.pbcor.Rd | 2 man/se.prop.ps.Rd | 2 man/se.prop2.Rd | 2 man/se.semipartial.Rd | 12 - man/se.slope.Rd | 6 man/se.spear.Rd | 4 man/se.stdmean.ps.Rd | 4 man/se.tetra.Rd | 6 tests/testthat/test_meta_ave.R | 16 ++ tests/testthat/test_meta_rep.R | 17 +- tests/testthat/test_meta_se.R | 12 + 65 files changed, 1069 insertions(+), 656 deletions(-)
Title: Nested Cross-Validation with 'glmnet' and 'caret'
Description: Implements nested k*l-fold cross-validation for lasso and elastic-net regularised linear models via the 'glmnet' package and other machine learning models via the 'caret' package. Cross-validation of 'glmnet' alpha mixing parameter and embedded fast filter functions for feature selection are provided. Described as double cross-validation by Stone (1977) <doi:10.1111/j.2517-6161.1977.tb01603.x>. Also implemented is a method using outer CV to measure unbiased model performance metrics when fitting Bayesian linear and logistic regression shrinkage models using the horseshoe prior over parameters to encourage a sparse model as described by Piironen & Vehtari (2017) <doi:10.1214/17-EJS1337SI>.
Author: Myles Lewis [aut, cre] ,
Athina Spiliopoulou [aut] ,
Cankut Cubuk [ctb] ,
Katriona Goldmann [ctb]
Maintainer: Myles Lewis <myles.lewis@qmul.ac.uk>
Diff between nestedcv versions 0.7.8 dated 2024-03-13 and 0.7.9 dated 2024-07-04
DESCRIPTION | 6 +- MD5 | 58 ++++++++++----------- NEWS.md | 17 ++++++ R/cva.glmnet.R | 23 ++++---- R/filters.R | 8 +-- R/innercv_roc.R | 6 +- R/metrics.R | 9 ++- R/nest_filter_balance.R | 6 +- R/nestcv.train.R | 8 +-- R/nestcv_SuperLearner.R | 9 +-- R/nestedcv.R | 17 +++--- R/outercv.R | 10 ++- R/plots.R | 22 ++++---- R/predSummary.R | 23 +++++++- R/randomsample.R | 2 README.md | 1 build/vignette.rds |binary inst/doc/nestedcv.html | 120 ++++++++++++++++++++++----------------------- man/coef.nestcv.glmnet.Rd | 2 man/cva.glmnet.Rd | 6 +- man/glmnet_coefs.Rd | 13 ++-- man/glmnet_filter.Rd | 8 +-- man/innercv_roc.Rd | 2 man/nestcv.SuperLearner.Rd | 7 +- man/nestcv.glmnet.Rd | 14 ++--- man/nestcv.train.Rd | 6 +- man/outercv.Rd | 8 +-- man/plot.cva.glmnet.Rd | 20 +++---- man/plot_caret.Rd | 2 man/train_roc.Rd | 4 - 30 files changed, 244 insertions(+), 193 deletions(-)
Title: Get and Modify 'oTree' Data
Description: Manage data from 'oTree' experiments. Import 'oTree' data
and clean them by using functions to deal with messy data,
dropouts, and other problematic cases. Create IDs, calculate the time,
transfer variables between app data frames, and delete sensitive
information. You can also check your experimental data before running
the experiment.
Information on 'oTree' is found in Chen, D. L.,
Schonger, M., & Wickens, C. (2016) <doi:10.1016/j.jbef.2015.12.001>.
Author: Patricia F. Zauchner [aut, trl, cre, cph]
Maintainer: Patricia F. Zauchner <patricia.zauchner@gmx.at>
Diff between gmoTree versions 1.0.1 dated 2023-10-25 and 1.1.0 dated 2024-07-04
gmoTree-1.0.1/gmoTree/inst/_pkgdown.yml |only gmoTree-1.1.0/gmoTree/DESCRIPTION | 37 gmoTree-1.1.0/gmoTree/MD5 | 92 gmoTree-1.1.0/gmoTree/NEWS.md | 17 gmoTree-1.1.0/gmoTree/R/apptime.R | 911 - gmoTree-1.1.0/gmoTree/R/assignv.R | 21 gmoTree-1.1.0/gmoTree/R/assignv_to_aaw.R | 35 gmoTree-1.1.0/gmoTree/R/constant_col.R | 6 gmoTree-1.1.0/gmoTree/R/delete_cases.R | 61 gmoTree-1.1.0/gmoTree/R/delete_dropouts.R | 120 gmoTree-1.1.0/gmoTree/R/delete_duplicate.R | 16 gmoTree-1.1.0/gmoTree/R/delete_plabels.R | 25 gmoTree-1.1.0/gmoTree/R/delete_sessions.R | 72 gmoTree-1.1.0/gmoTree/R/extime.R | 498 gmoTree-1.1.0/gmoTree/R/import_otree.R | 161 gmoTree-1.1.0/gmoTree/R/make_ids.R | 139 gmoTree-1.1.0/gmoTree/R/messy_chat.R | 68 gmoTree-1.1.0/gmoTree/R/messy_time.R | 75 gmoTree-1.1.0/gmoTree/R/oTree.R | 3 gmoTree-1.1.0/gmoTree/R/pagesec.R | 81 gmoTree-1.1.0/gmoTree/R/show_constant.R | 15 gmoTree-1.1.0/gmoTree/R/show_dropouts.R | 43 gmoTree-1.1.0/gmoTree/README.md | 131 gmoTree-1.1.0/gmoTree/build/vignette.rds |binary gmoTree-1.1.0/gmoTree/inst/CITATION | 10 gmoTree-1.1.0/gmoTree/inst/doc/intro_to_gmoTree.R | 5 gmoTree-1.1.0/gmoTree/inst/doc/intro_to_gmoTree.Rmd | 76 gmoTree-1.1.0/gmoTree/inst/doc/intro_to_gmoTree.html | 1096 - gmoTree-1.1.0/gmoTree/man/apptime.Rd | 180 gmoTree-1.1.0/gmoTree/man/assignv.Rd | 99 gmoTree-1.1.0/gmoTree/man/assignv_to_aaw.Rd | 130 gmoTree-1.1.0/gmoTree/man/delete_cases.Rd | 273 gmoTree-1.1.0/gmoTree/man/delete_dropouts.Rd | 288 gmoTree-1.1.0/gmoTree/man/delete_duplicate.Rd | 100 gmoTree-1.1.0/gmoTree/man/delete_plabels.Rd | 93 gmoTree-1.1.0/gmoTree/man/delete_sessions.Rd | 170 gmoTree-1.1.0/gmoTree/man/extime.Rd | 211 gmoTree-1.1.0/gmoTree/man/figures |only gmoTree-1.1.0/gmoTree/man/import_otree.Rd | 336 gmoTree-1.1.0/gmoTree/man/make_ids.Rd | 217 gmoTree-1.1.0/gmoTree/man/messy_chat.Rd | 157 gmoTree-1.1.0/gmoTree/man/messy_time.Rd | 153 gmoTree-1.1.0/gmoTree/man/oTree.Rd | 43 gmoTree-1.1.0/gmoTree/man/pagesec.Rd | 89 gmoTree-1.1.0/gmoTree/man/show_constant.Rd | 83 gmoTree-1.1.0/gmoTree/man/show_dropouts.Rd | 173 gmoTree-1.1.0/gmoTree/tests/testthat/tests.R |16087 +++++++++---------- gmoTree-1.1.0/gmoTree/vignettes/intro_to_gmoTree.Rmd | 76 48 files changed, 11745 insertions(+), 11027 deletions(-)
Title: A Code Generator for ODE-Based Models
Description: Provides an R6 class and several utility methods to
facilitate the implementation of models based on ordinary
differential equations. The heart of the package is a code generator
that creates compiled 'Fortran' (or 'R') code which can be passed to
a numerical solver. There is direct support for solvers contained
in packages 'deSolve' and 'rootSolve'.
Author: David Kneis <david.kneis@tu-dresden.de>
Maintainer: David Kneis <david.kneis@tu-dresden.de>
Diff between rodeo versions 0.7.8 dated 2023-12-15 and 0.8.1 dated 2024-07-04
rodeo-0.7.8/rodeo/data/funs.r |only rodeo-0.7.8/rodeo/data/pars.r |only rodeo-0.7.8/rodeo/data/pros.r |only rodeo-0.7.8/rodeo/data/stoi.r |only rodeo-0.7.8/rodeo/data/vars.r |only rodeo-0.8.1/rodeo/DESCRIPTION | 17 ++--- rodeo-0.8.1/rodeo/MD5 | 31 +++++----- rodeo-0.8.1/rodeo/NAMESPACE | 3 + rodeo-0.8.1/rodeo/R/0_package.r | 11 ++- rodeo-0.8.1/rodeo/R/class.r | 35 +++++++++--- rodeo-0.8.1/rodeo/R/plainMethod_buildFromWorkbook.r |only rodeo-0.8.1/rodeo/build/vignette.rds |binary rodeo-0.8.1/rodeo/data/funs.rda |only rodeo-0.8.1/rodeo/data/pars.rda |only rodeo-0.8.1/rodeo/data/pros.rda |only rodeo-0.8.1/rodeo/data/stoi.rda |only rodeo-0.8.1/rodeo/data/vars.rda |only rodeo-0.8.1/rodeo/inst/doc/rodeoVignette.R | 58 ++++++++++---------- rodeo-0.8.1/rodeo/inst/doc/rodeoVignette.pdf |binary rodeo-0.8.1/rodeo/inst/models |only rodeo-0.8.1/rodeo/man/buildFromWorkbook.Rd |only rodeo-0.8.1/rodeo/man/rodeo-class.Rd | 35 +++++++++--- rodeo-0.8.1/rodeo/man/rodeo-package.Rd | 9 +++ 23 files changed, 129 insertions(+), 70 deletions(-)
Title: Cluster Analysis with Missing Values by Multiple Imputation
Description: Allows clustering of incomplete observations by addressing missing values using multiple imputation. For achieving this goal, the methodology consists in three steps, following Audigier and Niang 2022 <doi:10.1007/s11634-022-00519-1>. I) Missing data imputation using dedicated models. Four multiple imputation methods are proposed, two are based on joint modelling and two are fully sequential methods, as discussed in Audigier et al. (2021) <doi:10.48550/arXiv.2106.04424>. II) cluster analysis of imputed data sets. Six clustering methods are available (distances-based or model-based), but custom methods can also be easily used. III) Partition pooling. The set of partitions is aggregated using Non-negative Matrix Factorization based method. An associated instability measure is computed by bootstrap (see Fang, Y. and Wang, J., 2012 <doi:10.1016/j.csda.2011.09.003>). Among applications, this instability measure can be used to choose a number of clusters with missing value [...truncated...]
Author: Vincent Audigier [aut, cre] ,
Hang Joon Kim [ctb]
Maintainer: Vincent Audigier <vincent.audigier@cnam.fr>
Diff between clusterMI versions 1.1.1 dated 2024-05-31 and 1.2 dated 2024-07-04
clusterMI-1.1.1/clusterMI/R/RI_dist.intern.R |only clusterMI-1.1.1/clusterMI/R/nmf.R |only clusterMI-1.1.1/clusterMI/man/nmf.Rd |only clusterMI-1.2/clusterMI/DESCRIPTION | 16 clusterMI-1.2/clusterMI/MD5 | 79 - clusterMI-1.2/clusterMI/NAMESPACE | 20 clusterMI-1.2/clusterMI/R/Silhouette.intern.R |only clusterMI-1.2/clusterMI/R/calcul_inter.R |only clusterMI-1.2/clusterMI/R/calculintra.intern.R | 28 clusterMI-1.2/clusterMI/R/chooseB.R | 54 clusterMI-1.2/clusterMI/R/chooseB.intern.R | 42 clusterMI-1.2/clusterMI/R/choosem.R | 3 clusterMI-1.2/clusterMI/R/choosemaxit.R | 60 clusterMI-1.2/clusterMI/R/choosenbclust.R | 163 +- clusterMI-1.2/clusterMI/R/chooser.R | 3 clusterMI-1.2/clusterMI/R/cluster.intern.R |only clusterMI-1.2/clusterMI/R/clusterMI-package.R | 11 clusterMI-1.2/clusterMI/R/clusterMI.R | 227 +-- clusterMI-1.2/clusterMI/R/fastnmf.R | 4 clusterMI-1.2/clusterMI/R/imputedata.R | 94 + clusterMI-1.2/clusterMI/R/myem.mix.R | 63 clusterMI-1.2/clusterMI/R/overimpute.R | 14 clusterMI-1.2/clusterMI/R/prodna.R |only clusterMI-1.2/clusterMI/R/varselbest.R | 5 clusterMI-1.2/clusterMI/build/vignette.rds |binary clusterMI-1.2/clusterMI/inst/doc/clusterMI.R | 1151 +++++++++-------- clusterMI-1.2/clusterMI/inst/doc/clusterMI.Rmd | 1178 +++++++++--------- clusterMI-1.2/clusterMI/inst/doc/clusterMI.html | 440 +++--- clusterMI-1.2/clusterMI/man/Rcpp_modelobject-class.Rd | 4 clusterMI-1.2/clusterMI/man/Silhouette.intern.Rd |only clusterMI-1.2/clusterMI/man/chooseB.Rd | 34 clusterMI-1.2/clusterMI/man/chooseB.intern.Rd | 23 clusterMI-1.2/clusterMI/man/choosem.Rd | 3 clusterMI-1.2/clusterMI/man/choosemaxit.Rd | 24 clusterMI-1.2/clusterMI/man/choosenbclust.Rd | 3 clusterMI-1.2/clusterMI/man/chooser.Rd | 3 clusterMI-1.2/clusterMI/man/cluster.intern.Rd |only clusterMI-1.2/clusterMI/man/clusterMI-package.Rd | 11 clusterMI-1.2/clusterMI/man/clusterMI.Rd | 16 clusterMI-1.2/clusterMI/man/fastnmf.Rd | 3 clusterMI-1.2/clusterMI/man/imputedata.Rd | 5 clusterMI-1.2/clusterMI/man/myem.mix.Rd |only clusterMI-1.2/clusterMI/man/overimpute.Rd | 3 clusterMI-1.2/clusterMI/man/prodna.Rd |only clusterMI-1.2/clusterMI/man/varselbest.Rd | 3 clusterMI-1.2/clusterMI/vignettes/clusterMI.Rmd | 1178 +++++++++--------- 46 files changed, 2654 insertions(+), 2314 deletions(-)
Title: Estimate Univariate Gaussian and Student's t Mixture
Autoregressive Models
Description: Maximum likelihood estimation of univariate Gaussian Mixture Autoregressive (GMAR),
Student's t Mixture Autoregressive (StMAR), and Gaussian and Student's t Mixture Autoregressive (G-StMAR) models,
quantile residual tests, graphical diagnostics, forecast and simulate from GMAR, StMAR and G-StMAR processes.
Leena Kalliovirta, Mika Meitz, Pentti Saikkonen (2015) <doi:10.1111/jtsa.12108>,
Mika Meitz, Daniel Preve, Pentti Saikkonen (2023) <doi:10.1080/03610926.2021.1916531>,
Savi Virolainen (2022) <doi:10.1515/snde-2020-0060>.
Author: Savi Virolainen [aut, cre]
Maintainer: Savi Virolainen <savi.virolainen@helsinki.fi>
Diff between uGMAR versions 3.4.5 dated 2023-08-19 and 3.5.0 dated 2024-07-04
DESCRIPTION | 6 - MD5 | 18 ++--- NEWS.md | 4 + R/GSMARconstructor.R | 9 +- R/MAINest.R | 144 +++++++++++++++++++++++++++++++++++++---------- inst/doc/uGMARpaper.Rnw | 10 ++- inst/doc/uGMARpaper.pdf |binary man/alt_gsmar.Rd | 2 man/fitGSMAR.Rd | 41 ++++++++----- vignettes/uGMARpaper.Rnw | 10 ++- 10 files changed, 177 insertions(+), 67 deletions(-)
Title: Robust Meta-Analysis and Meta-Regression
Description: Performs meta-analysis and meta-regression using standard and robust methods with confidence intervals based on the profile likelihood. Robust methods are based on alternative distributions for the random effect, either the t-distribution (Lee and Thompson, 2008 <doi:10.1002/sim.2897> or Baker and Jackson, 2008 <doi:10.1007/s10729-007-9041-8>) or mixtures of normals (Beath, 2014 <doi:10.1002/jrsm.1114>).
Author: Ken Beath [aut, cre],
Ben Bolker [aut],
R Development Core Team [aut]
Maintainer: Ken Beath <ken@kjbeath.id.au>
Diff between metaplus versions 1.0-4 dated 2022-05-13 and 1.0-5 dated 2024-07-04
DESCRIPTION | 14 +++++++------- MD5 | 26 +++++++++++++------------- NAMESPACE | 3 +++ R/confint.R | 4 ++-- R/mymle.R | 4 ++-- R/profile.R | 2 +- build/vignette.rds |binary inst/NEWS | 6 ++++++ man/metaplus-package.Rd | 2 +- man/metaplus.Rd | 2 +- man/outlierProbs.Rd | 2 +- man/plot.outlierProbs.Rd | 2 +- man/summary.Rd | 2 +- man/testOutliers.Rd | 2 +- 14 files changed, 40 insertions(+), 31 deletions(-)
Title: Network Dynamic Temporal Visualizations
Description: Renders dynamic network data from 'networkDynamic' objects as movies, interactive animations, or other representations of changing relational structures and attributes.
Author: Skye Bender-deMoll [cre, aut],
Martina Morris [ctb]
Maintainer: Skye Bender-deMoll <skyebend@uw.edu>
Diff between ndtv versions 0.13.3 dated 2022-11-20 and 0.13.4 dated 2024-07-04
ChangeLog | 6 ++++- DESCRIPTION | 14 ++++++------ MD5 | 48 +++++++++++++++++++++--------------------- NAMESPACE | 4 ++- R/export.dot.R | 2 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/ndtv.R | 14 +++++++----- inst/doc/ndtv.Rnw | 16 +++++++++----- inst/doc/ndtv.pdf |binary man/export.dot.Rd | 8 +++---- man/export.pajek.net.Rd | 4 +-- man/filmstrip.Rd | 4 +-- man/install.graphviz.Rd | 6 ++--- man/msm.sim.Rd | 2 - man/ndtv-package.Rd | 2 - man/ndtvAnimationWidget.Rd | 2 - man/network.layout.animate.Rd | 12 +++++----- man/proximity.timeline.Rd | 8 +++---- man/render.animation.Rd | 16 +++++++------- man/render.d3movie.Rd | 38 ++++++++++++++++----------------- man/timeline.Rd | 6 ++--- man/toy_epi_sim.Rd | 2 - man/transmissionTimeline.Rd | 6 ++--- vignettes/ndtv.Rnw | 16 +++++++++----- 25 files changed, 129 insertions(+), 107 deletions(-)
Title: Flux Estimation with Static Chamber Data
Description: Statistical analysis of static chamber concentration data for trace gas flux estimation.
Author: Asger R. Pedersen <arpstat@outlook.dk>
Maintainer: Asger R. Pedersen <arpstat@outlook.dk>
Diff between HMR versions 1.0.3 dated 2023-12-11 and 1.0.4 dated 2024-07-04
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- man/HMR.Rd | 2 +- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: Highly Performant String Case Converter
Description: Provides a case conversion between common cases like CamelCase and
snake_case. Using the 'rust crate heck' <https://github.com/withoutboats/heck>
as the backend for a highly performant case conversion for 'R'.
Author: Josiah Parry [aut] ,
Dyfan Jones [cre]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between heck versions 0.1.0 dated 2024-04-12 and 0.1.1 dated 2024-07-04
heck-0.1.0/heck/man/heck-package.Rd |only heck-0.1.1/heck/DESCRIPTION | 10 +++++---- heck-0.1.1/heck/MD5 | 19 ++++++++---------- heck-0.1.1/heck/NEWS.md | 4 +++ heck-0.1.1/heck/R/extendr-wrappers.R | 1 heck-0.1.1/heck/README.md | 30 +++++++++++++++++++++++++++-- heck-0.1.1/heck/inst/WORDLIST | 3 +- heck-0.1.1/heck/src/rust/Cargo.lock | 12 +++++------ heck-0.1.1/heck/src/rust/Cargo.toml | 4 +-- heck-0.1.1/heck/src/rust/vendor.tar.xz |binary heck-0.1.1/heck/tests/testthat/test_case.R | 20 +++++++++---------- 11 files changed, 67 insertions(+), 36 deletions(-)
Title: A Suite of Routines for Working with Jordan Algebras
Description: A Jordan algebra is an algebraic object originally
designed to study observables in quantum mechanics. Jordan
algebras are commutative but non-associative; they satisfy the
Jordan identity. The package follows the ideas and notation of
K. McCrimmon (2004, ISBN:0-387-95447-3) "A Taste of Jordan
Algebras". To cite the package in publications, please use
Hankin (2023) <doi:10.48550/arXiv.2303.06062>.
Author: Robin K. S. Hankin [aut, cre]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between jordan versions 1.0-5 dated 2024-03-28 and 1.0-6 dated 2024-07-04
jordan-1.0-5/jordan/build/jordan.pdf |only jordan-1.0-5/jordan/build/stage23.rdb |only jordan-1.0-6/jordan/DESCRIPTION | 13 jordan-1.0-6/jordan/MD5 | 37 - jordan-1.0-6/jordan/NAMESPACE | 4 jordan-1.0-6/jordan/NEWS.md |only jordan-1.0-6/jordan/R/aaa_allclasses.R | 2 jordan-1.0-6/jordan/R/type_5.R | 2 jordan-1.0-6/jordan/build/partial.rdb |binary jordan-1.0-6/jordan/build/vignette.rds |binary jordan-1.0-6/jordan/inst/CITATION | 2 jordan-1.0-6/jordan/inst/doc/jordan.R | 5 jordan-1.0-6/jordan/inst/doc/jordan.Rmd | 24 - jordan-1.0-6/jordan/inst/doc/jordan.html | 631 ++++++++++++++---------------- jordan-1.0-6/jordan/man/coerce.Rd | 13 jordan-1.0-6/jordan/man/id.Rd | 4 jordan-1.0-6/jordan/man/jordan-package.Rd | 12 jordan-1.0-6/jordan/man/misc.Rd | 3 jordan-1.0-6/jordan/man/r_to_n.Rd | 20 jordan-1.0-6/jordan/vignettes/jordan.Rmd | 24 - jordan-1.0-6/jordan/vignettes/jordan.bib | 4 21 files changed, 395 insertions(+), 405 deletions(-)
Title: Data Only Package to 'healthyR'
Description: Provides data for functions typically used in the 'healthyR' package.
Author: Steven Sanderson [aut, cre, cph]
Maintainer: Steven Sanderson <spsanderson@gmail.com>
Diff between healthyR.data versions 1.1.0 dated 2024-05-23 and 1.1.1 dated 2024-07-04
healthyR.data-1.1.0/healthyR.data/R/get-cms-meta-data.R |only healthyR.data-1.1.0/healthyR.data/R/get-provider-meta-data.R |only healthyR.data-1.1.1/healthyR.data/DESCRIPTION | 10 healthyR.data-1.1.1/healthyR.data/MD5 | 64 +-- healthyR.data-1.1.1/healthyR.data/NAMESPACE | 1 healthyR.data-1.1.1/healthyR.data/NEWS.md | 16 healthyR.data-1.1.1/healthyR.data/R/00-global-variables.R | 22 - healthyR.data-1.1.1/healthyR.data/R/dl-cms-data.R | 173 +++++---- healthyR.data-1.1.1/healthyR.data/R/dl-cur-hosp-data-dict.R | 130 +++---- healthyR.data-1.1.1/healthyR.data/R/dl-provider-data.R | 38 -- healthyR.data-1.1.1/healthyR.data/R/get-cur-asc-data.R | 158 ++++----- healthyR.data-1.1.1/healthyR.data/R/get-cur-asc-qr-data.R | 166 ++++----- healthyR.data-1.1.1/healthyR.data/R/get-cur-comp-death-data.R | 166 ++++----- healthyR.data-1.1.1/healthyR.data/R/get-cur-hai-data.R | 166 ++++----- healthyR.data-1.1.1/healthyR.data/R/get-cur-hcahps-data.R | 168 ++++----- healthyR.data-1.1.1/healthyR.data/R/get-cur-hvbp-data.R | 174 +++++----- healthyR.data-1.1.1/healthyR.data/R/get-cur-image-efficiency.R | 166 ++++----- healthyR.data-1.1.1/healthyR.data/R/get-cur-maternal-data.R | 166 ++++----- healthyR.data-1.1.1/healthyR.data/R/get-cur-opqr-data.R | 166 ++++----- healthyR.data-1.1.1/healthyR.data/R/get-cur-payment-data.R | 166 ++++----- healthyR.data-1.1.1/healthyR.data/R/get-cur-pch-hcahps-data.R | 166 ++++----- healthyR.data-1.1.1/healthyR.data/R/get-cur-pch-oncology-data.R | 126 +++---- healthyR.data-1.1.1/healthyR.data/R/get-cur-pch-outcomes-data.R | 162 ++++----- healthyR.data-1.1.1/healthyR.data/R/get-cur-pchhai-hosp-data.R | 126 +++---- healthyR.data-1.1.1/healthyR.data/R/get-cur-timely-eff-care-data.R | 166 ++++----- healthyR.data-1.1.1/healthyR.data/R/get-cur-unplanned-hosp-data.R | 166 ++++----- healthyR.data-1.1.1/healthyR.data/R/get-cur-va-data.R | 170 ++++----- healthyR.data-1.1.1/healthyR.data/R/meta-get-cms-data.R |only healthyR.data-1.1.1/healthyR.data/R/meta-get-provider-data.R |only healthyR.data-1.1.1/healthyR.data/R/utils-valid-url.R |only healthyR.data-1.1.1/healthyR.data/man/current_hosp_data_dict.Rd | 74 ++-- healthyR.data-1.1.1/healthyR.data/man/fetch_cms_data.Rd | 3 healthyR.data-1.1.1/healthyR.data/man/fetch_provider_data.Rd | 94 ++--- healthyR.data-1.1.1/healthyR.data/man/get_cms_meta_data.Rd | 2 healthyR.data-1.1.1/healthyR.data/man/get_provider_meta_data.Rd | 2 healthyR.data-1.1.1/healthyR.data/man/is_valid_url.Rd |only 36 files changed, 1706 insertions(+), 1667 deletions(-)
Title: Implement Download Buttons in 'rmarkdown'
Description: Implement download buttons in HTML output from 'rmarkdown' without the need for 'runtime:shiny'.
Author: Felipe Mattioni Maturana [aut, cre]
,
John Coene [ctb]
Maintainer: Felipe Mattioni Maturana <felipe.mattioni@med.uni-tuebingen.de>
Diff between downloadthis versions 0.3.3 dated 2023-11-09 and 0.4.0 dated 2024-07-04
DESCRIPTION | 10 - MD5 | 26 +-- NEWS.md | 11 + R/download.R | 6 R/utils.R | 47 +++-- README.md | 2 build/vignette.rds |binary inst/assets/css/all.min.css | 8 - inst/assets/css/v4-shims.min.css | 5 inst/assets/js/script.js | 7 inst/doc/button_types.html | 235 ++++++++++++++++++++--------- inst/doc/customization.html | 121 ++++++++++----- inst/doc/downloadthis.html | 311 ++++++++++++++++++++++++++------------- man/download_this.Rd | 6 14 files changed, 536 insertions(+), 259 deletions(-)
Title: Visual and Non-Visual Spectral Analysis of Light
Description: Analyse light spectra for visual and non-visual (often called
melanopic) needs, wrapped up in a Shiny App. 'Spectran' allows for the import
of spectra in various CSV forms but also provides a wide range of example
spectra and even the creation of own spectral power distributions. The goal of
the app is to provide easy access and a visual overview of the spectral
calculations underlying common parameters used in the field. It is thus ideal
for educational purposes or the creation of presentation ready graphs in
lighting research and application. 'Spectran' uses equations and action spectra
described in CIE S026 (2018) <doi:10.25039/S026.2018>, DIN/TS 5031-100 (2021)
<doi:10.31030/3287213>, and ISO/CIE 23539 (2023)
<doi:10.25039/IS0.CIE.23539.2023>.
Author: Johannes Zauner [aut, cre, cph]
,
LiTG [fnd, cph]
Maintainer: Johannes Zauner <spectran@litg.de>
Diff between Spectran versions 1.0.3 dated 2023-11-09 and 1.0.6 dated 2024-07-04
DESCRIPTION | 11 ++++++----- MD5 | 30 +++++++++++++++--------------- NEWS.md | 14 ++++++++++++++ R/analysis_helpers_plot.R | 4 ++-- R/data.R | 6 +++--- R/impressum.R | 5 +++-- R/sysdata.rda |binary README.md | 33 +++++++++++++++++---------------- build/partial.rdb |binary data/ColorP.rda |binary inst/CITATION | 7 ++++--- inst/app/www/Logo.png |binary inst/app/www/litg-logo.png |binary man/ColorP.Rd | 4 ++-- man/Specs.Rd | 2 +- man/Spectran-package.Rd | 1 + 16 files changed, 68 insertions(+), 49 deletions(-)
Title: Manipulate Dates for Finance
Description: Functions to manipulate dates and count days for quantitative finance analysis. The 'quantdates' package considers leap, holidays and business days for relevant calendars in a financial context to simplify quantitative finance calculations, consistent with International Swaps and Derivatives Association (ISDA) (2006) <https://www.isda.org/book/2006-isda-definitions/> regulations.
Author: Julian Chitiva [aut],
Diego Jara [aut],
Erick Translateur [com],
Juan Pablo Bermudez [aut, cre],
Quantil S.A.S [aut, cph]
Maintainer: Juan Pablo Bermudez <juan.bermudez@quantil.com.co>
Diff between quantdates versions 2.0.2 dated 2024-06-29 and 2.0.4 dated 2024-07-04
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/DateManipulation.R | 8 ++++---- inst/doc/quantdates.html | 16 ++++++++-------- man/AddBusinessDays.Rd | 4 ++-- man/BusinessDays.Rd | 4 ++-- 7 files changed, 29 insertions(+), 25 deletions(-)
Title: Code and Data Accompanying the Eco-Stats Text (Warton 2022)
Description: Functions and data supporting the Eco-Stats text (Warton, 2022, Springer), and solutions to exercises. Functions include tools for using simulation envelopes in diagnostic plots, and a function for diagnostic plots of multivariate linear models. Datasets mentioned in the package are included here (where not available elsewhere) and there is a vignette for each chapter of the text with solutions to exercises.
Author: David Warton [aut, cre],
Christopher Chung [ctb],
Mark Donoghoe [ctb],
Eve Slavich [ctb]
Maintainer: David Warton <david.warton@unsw.edu.au>
Diff between ecostats versions 1.1.11 dated 2022-08-24 and 1.2.1 dated 2024-07-04
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ecostats-1.2.1/ecostats/R/plotenvelope.R | 46 ecostats-1.2.1/ecostats/README.md | 16 ecostats-1.2.1/ecostats/build/vignette.rds |binary ecostats-1.2.1/ecostats/inst/doc/Chapter10Solutions.html | 838 ++--- ecostats-1.2.1/ecostats/inst/doc/Chapter11Solutions.Rmd | 394 -- ecostats-1.2.1/ecostats/inst/doc/Chapter11Solutions.html | 1242 ++----- ecostats-1.2.1/ecostats/inst/doc/Chapter12Solutions.Rmd | 123 ecostats-1.2.1/ecostats/inst/doc/Chapter12Solutions.html | 739 ++-- ecostats-1.2.1/ecostats/inst/doc/Chapter13Solutions.html | 774 ++-- ecostats-1.2.1/ecostats/inst/doc/Chapter14Solutions.Rmd | 89 ecostats-1.2.1/ecostats/inst/doc/Chapter14Solutions.html | 965 ++---- ecostats-1.2.1/ecostats/inst/doc/Chapter15Solutions.Rmd | 67 ecostats-1.2.1/ecostats/inst/doc/Chapter15Solutions.html | 724 ++-- ecostats-1.2.1/ecostats/inst/doc/Chapter16Solutions.html | 668 ++-- ecostats-1.2.1/ecostats/inst/doc/Chapter17Solutions.R | 16 ecostats-1.2.1/ecostats/inst/doc/Chapter17Solutions.Rmd | 16 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ecostats-1.2.1/ecostats/man/maunaloa.Rd | 58 ecostats-1.2.1/ecostats/man/plotenvelope.Rd | 4 ecostats-1.2.1/ecostats/man/qqenvelope.Rd | 166 - ecostats-1.2.1/ecostats/man/ravens.Rd | 74 ecostats-1.2.1/ecostats/man/reveg.Rd | 60 ecostats-1.2.1/ecostats/man/seaweed.Rd | 66 ecostats-1.2.1/ecostats/man/seedsTemp.Rd | 66 ecostats-1.2.1/ecostats/man/simulate.manyglm.Rd | 74 ecostats-1.2.1/ecostats/man/simulate.mlm.Rd | 104 ecostats-1.2.1/ecostats/man/waterQuality.Rd | 58 ecostats-1.2.1/ecostats/man/windFarms.Rd | 82 ecostats-1.2.1/ecostats/vignettes/Chapter11Solutions.Rmd | 394 -- ecostats-1.2.1/ecostats/vignettes/Chapter12Solutions.Rmd | 123 ecostats-1.2.1/ecostats/vignettes/Chapter14Solutions.Rmd | 89 ecostats-1.2.1/ecostats/vignettes/Chapter15Solutions.Rmd | 67 ecostats-1.2.1/ecostats/vignettes/Chapter17Solutions.Rmd | 16 ecostats-1.2.1/ecostats/vignettes/Chapter3Solutions.Rmd | 56 ecostats-1.2.1/ecostats/vignettes/Chapter4Solutions.Rmd | 72 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Title: Bayesian Federated Inference
Description: The Bayesian Federated Inference ('BFI') method combines inference results obtained from local data sets in the separate centers. In this version of the package, the 'BFI' methodology is programmed for linear, logistic and survival regression models. For GLMs, see Jonker, Pazira and Coolen (2024) <doi:10.1002/sim.10072>; for survival models, see Pazira, Massa, Weijers, Coolen and Jonker (2024) <doi:10.48550/arXiv.2404.17464>; and for heterogeneous populations, see Jonker, Pazira and Coolen (2024) <doi:10.48550/arXiv.2402.02898>.
Author: Hassan Pazira [aut, cre] ,
Emanuele Massa [aut] ,
Marianne A. Jonker [aut]
Maintainer: Hassan Pazira <hassan.pazira@radboudumc.nl>
Diff between BFI versions 1.1.4 dated 2024-04-27 and 2.0.1 dated 2024-07-04
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Title: Airborne LiDAR Filtering Method Based on Multiscale Curvature
Description: Multiscale Curvature Classification of ground returns in 3-D LiDAR
point clouds, designed for forested environments. 'RMCC' is a porting to R of the
'MCC-lidar' method by Evans and Hudak (2007) <doi:10.1109/TGRS.2006.890412>.
Author: Jean-Romain Roussel [aut, cre],
Evans Jeffrey S [aut],
Hudak Andrew T [aut],
Green Code LLC [cph] ,
Jarno Elonen [cph] ,
Thomas Becker [cph]
Maintainer: Jean-Romain Roussel <jean-romain.roussel.1@ulaval.ca>
Diff between RMCC versions 0.1.0 dated 2022-02-08 and 0.1.1 dated 2024-07-04
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- inst/tinytest/test_RMCC.R | 4 +++- src/Grid.h | 2 +- src/Makevars | 1 - src/Makevars.win | 1 - 6 files changed, 12 insertions(+), 12 deletions(-)
Title: Preprocessing and Feature Engineering Steps for Modeling
Description: A recipe prepares your data for modeling. We provide an
extensible framework for pipeable sequences of feature engineering
steps provides preprocessing tools to be applied to data. Statistical
parameters for the steps can be estimated from an initial data set and
then applied to other data sets. The resulting processed output can
then be used as inputs for statistical or machine learning models.
Author: Max Kuhn [aut, cre],
Hadley Wickham [aut],
Emil Hvitfeldt [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Max Kuhn <max@posit.co>
Diff between recipes versions 1.0.10 dated 2024-02-18 and 1.1.0 dated 2024-07-04
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recipes-1.1.0/recipes/man/developer_functions.Rd | 14 recipes-1.1.0/recipes/man/juice.Rd | 2 recipes-1.1.0/recipes/man/recipes-internal.Rd | 27 recipes-1.1.0/recipes/man/recipes-role-indicator.Rd |only recipes-1.1.0/recipes/man/recipes.Rd | 2 recipes-1.1.0/recipes/man/recipes_ptype.Rd |only recipes-1.1.0/recipes/man/recipes_ptype_validate.Rd |only recipes-1.1.0/recipes/man/reexports.Rd | 3 recipes-1.1.0/recipes/man/required_pkgs.recipe.Rd | 11 recipes-1.1.0/recipes/man/roles.Rd | 6 recipes-1.1.0/recipes/man/selections.Rd | 9 recipes-1.1.0/recipes/man/step_BoxCox.Rd | 2 recipes-1.1.0/recipes/man/step_YeoJohnson.Rd | 2 recipes-1.1.0/recipes/man/step_arrange.Rd | 4 recipes-1.1.0/recipes/man/step_bagimpute.Rd |only recipes-1.1.0/recipes/man/step_bin2factor.Rd | 2 recipes-1.1.0/recipes/man/step_bs.Rd | 4 recipes-1.1.0/recipes/man/step_classdist.Rd | 8 recipes-1.1.0/recipes/man/step_classdist_shrunken.Rd | 8 recipes-1.1.0/recipes/man/step_count.Rd | 4 recipes-1.1.0/recipes/man/step_date.Rd | 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recipes-1.1.0/recipes/man/step_pca.Rd | 6 recipes-1.1.0/recipes/man/step_percentile.Rd | 2 recipes-1.1.0/recipes/man/step_pls.Rd | 6 recipes-1.1.0/recipes/man/step_poly.Rd | 2 recipes-1.1.0/recipes/man/step_ratio.Rd | 6 recipes-1.1.0/recipes/man/step_regex.Rd | 4 recipes-1.1.0/recipes/man/step_relevel.Rd | 2 recipes-1.1.0/recipes/man/step_relu.Rd | 2 recipes-1.1.0/recipes/man/step_rename.Rd | 2 recipes-1.1.0/recipes/man/step_rename_at.Rd | 4 recipes-1.1.0/recipes/man/step_rollimpute.Rd |only recipes-1.1.0/recipes/man/step_sample.Rd | 4 recipes-1.1.0/recipes/man/step_scale.Rd | 2 recipes-1.1.0/recipes/man/step_select.Rd | 4 recipes-1.1.0/recipes/man/step_slice.Rd | 4 recipes-1.1.0/recipes/man/step_spatialsign.Rd | 6 recipes-1.1.0/recipes/man/step_sqrt.Rd | 2 recipes-1.1.0/recipes/man/step_string2factor.Rd | 2 recipes-1.1.0/recipes/man/step_time.Rd | 2 recipes-1.1.0/recipes/man/step_unknown.Rd | 2 recipes-1.1.0/recipes/man/step_unorder.Rd | 2 recipes-1.1.0/recipes/man/step_window.Rd | 6 recipes-1.1.0/recipes/man/terms_select.Rd | 24 recipes-1.1.0/recipes/tests/testthat/_snaps/R4.2/selections.md | 2 recipes-1.1.0/recipes/tests/testthat/_snaps/R4.3/selections.md | 2 recipes-1.1.0/recipes/tests/testthat/_snaps/basics.md | 83 + recipes-1.1.0/recipes/tests/testthat/_snaps/class.md | 2 recipes-1.1.0/recipes/tests/testthat/_snaps/colcheck.md | 4 recipes-1.1.0/recipes/tests/testthat/_snaps/cut.md | 2 recipes-1.1.0/recipes/tests/testthat/_snaps/deprec-impute_bag.md |only recipes-1.1.0/recipes/tests/testthat/_snaps/deprec-impute_knn.md |only recipes-1.1.0/recipes/tests/testthat/_snaps/deprec-impute_lower.md |only recipes-1.1.0/recipes/tests/testthat/_snaps/deprec-impute_median.md |only recipes-1.1.0/recipes/tests/testthat/_snaps/deprec-impute_mena.md |only recipes-1.1.0/recipes/tests/testthat/_snaps/deprec-impute_mode.md |only recipes-1.1.0/recipes/tests/testthat/_snaps/deprec-impute_roll.md |only recipes-1.1.0/recipes/tests/testthat/_snaps/dummy.md | 39 recipes-1.1.0/recipes/tests/testthat/_snaps/extract-dials.md | 4 recipes-1.1.0/recipes/tests/testthat/_snaps/extract_fit_time.md |only recipes-1.1.0/recipes/tests/testthat/_snaps/impute_bag.md | 9 recipes-1.1.0/recipes/tests/testthat/_snaps/impute_knn.md | 9 recipes-1.1.0/recipes/tests/testthat/_snaps/impute_lower.md | 9 recipes-1.1.0/recipes/tests/testthat/_snaps/impute_mean.md | 9 recipes-1.1.0/recipes/tests/testthat/_snaps/impute_median.md | 9 recipes-1.1.0/recipes/tests/testthat/_snaps/impute_mode.md | 9 recipes-1.1.0/recipes/tests/testthat/_snaps/impute_roll.md | 9 recipes-1.1.0/recipes/tests/testthat/_snaps/interact.md | 10 recipes-1.1.0/recipes/tests/testthat/_snaps/missing.md | 2 recipes-1.1.0/recipes/tests/testthat/_snaps/mutate.md | 17 recipes-1.1.0/recipes/tests/testthat/_snaps/profile.md | 3 recipes-1.1.0/recipes/tests/testthat/_snaps/ptype.md |only recipes-1.1.0/recipes/tests/testthat/_snaps/rm.md | 2 recipes-1.1.0/recipes/tests/testthat/_snaps/roles.md | 32 recipes-1.1.0/recipes/tests/testthat/_snaps/selections.md | 2 recipes-1.1.0/recipes/tests/testthat/_snaps/shuffle.md | 6 recipes-1.1.0/recipes/tests/testthat/_snaps/spline_b.md | 20 recipes-1.1.0/recipes/tests/testthat/_snaps/spline_convex.md | 20 recipes-1.1.0/recipes/tests/testthat/_snaps/spline_monotone.md | 20 recipes-1.1.0/recipes/tests/testthat/_snaps/spline_nonnegative.md | 20 recipes-1.1.0/recipes/tests/testthat/_snaps/unknown.md | 8 recipes-1.1.0/recipes/tests/testthat/test-basics.R | 89 + recipes-1.1.0/recipes/tests/testthat/test-bs.R | 24 recipes-1.1.0/recipes/tests/testthat/test-class.R | 10 recipes-1.1.0/recipes/tests/testthat/test-colcheck.R | 16 recipes-1.1.0/recipes/tests/testthat/test-cut.R | 2 recipes-1.1.0/recipes/tests/testthat/test-deprec-impute_bag.R |only recipes-1.1.0/recipes/tests/testthat/test-deprec-impute_knn.R |only recipes-1.1.0/recipes/tests/testthat/test-deprec-impute_lower.R |only recipes-1.1.0/recipes/tests/testthat/test-deprec-impute_median.R |only recipes-1.1.0/recipes/tests/testthat/test-deprec-impute_mena.R |only recipes-1.1.0/recipes/tests/testthat/test-deprec-impute_mode.R |only recipes-1.1.0/recipes/tests/testthat/test-deprec-impute_roll.R |only recipes-1.1.0/recipes/tests/testthat/test-dummy.R | 29 recipes-1.1.0/recipes/tests/testthat/test-extract_fit_time.R |only recipes-1.1.0/recipes/tests/testthat/test-impute_bag.R | 7 recipes-1.1.0/recipes/tests/testthat/test-impute_knn.R | 7 recipes-1.1.0/recipes/tests/testthat/test-impute_lower.R | 7 recipes-1.1.0/recipes/tests/testthat/test-impute_mean.R | 7 recipes-1.1.0/recipes/tests/testthat/test-impute_median.R | 7 recipes-1.1.0/recipes/tests/testthat/test-impute_mode.R | 7 recipes-1.1.0/recipes/tests/testthat/test-impute_roll.R | 7 recipes-1.1.0/recipes/tests/testthat/test-indicate_na.R | 4 recipes-1.1.0/recipes/tests/testthat/test-interact.R | 45 recipes-1.1.0/recipes/tests/testthat/test-missing.R | 4 recipes-1.1.0/recipes/tests/testthat/test-mutate.R | 45 recipes-1.1.0/recipes/tests/testthat/test-naomit.R | 6 recipes-1.1.0/recipes/tests/testthat/test-ns.R | 24 recipes-1.1.0/recipes/tests/testthat/test-ordinalscore.R | 2 recipes-1.1.0/recipes/tests/testthat/test-other.R | 22 recipes-1.1.0/recipes/tests/testthat/test-profile.R | 2 recipes-1.1.0/recipes/tests/testthat/test-ptype.R |only recipes-1.1.0/recipes/tests/testthat/test-roles.R | 12 recipes-1.1.0/recipes/tests/testthat/test-selections.R | 3 recipes-1.1.0/recipes/tests/testthat/test-shuffle.R | 8 recipes-1.1.0/recipes/tests/testthat/test-spline_b.R | 30 recipes-1.1.0/recipes/tests/testthat/test-spline_convex.R | 30 recipes-1.1.0/recipes/tests/testthat/test-spline_monotone.R | 30 recipes-1.1.0/recipes/tests/testthat/test-spline_nonnegative.R | 30 282 files changed, 1818 insertions(+), 1358 deletions(-)