Title: Statistical Methods for the Analysis of Excess Lifetimes
Description: A collection of parametric and nonparametric methods for the analysis of survival data. Parametric families implemented include Gompertz-Makeham, exponential and generalized Pareto models and extended models. The package includes an implementation of the nonparametric maximum likelihood estimator for arbitrary truncation and censoring pattern based on Turnbull (1976) <doi:10.1111/j.2517-6161.1976.tb01597.x>, along with graphical goodness-of-fit diagnostics. Parametric models for positive random variables and peaks over threshold models based on extreme value theory are described in Rootzén and Zholud (2017) <doi:10.1007/s10687-017-0305-5>; Belzile et al. (2021) <doi:10.1098/rsos.202097> and Belzile et al. (2022) <doi:10.1146/annurev-statistics-040120-025426>.
Author: Leo Belzile [aut, cre]
Maintainer: Leo Belzile <belzilel@gmail.com>
Diff between longevity versions 1.0.0 dated 2023-11-12 and 1.1 dated 2024-07-05
longevity-1.0.0/longevity/man/uq1_qqplot_elife.Rd |only longevity-1.0.0/longevity/vignettes/introduction_cache |only longevity-1.0.0/longevity/vignettes/introduction_files |only longevity-1.1/longevity/DESCRIPTION | 8 longevity-1.1/longevity/MD5 | 82 - longevity-1.1/longevity/NAMESPACE | 13 longevity-1.1/longevity/NEWS.md |only longevity-1.1/longevity/R/RcppExports.R | 32 longevity-1.1/longevity/R/datasets.R | 1 longevity-1.1/longevity/R/distributions.R | 64 + longevity-1.1/longevity/R/doubletruncation.R | 51 - longevity-1.1/longevity/R/hazard.R | 104 +- longevity-1.1/longevity/R/misc.R | 64 + longevity-1.1/longevity/R/nonparametric.R | 130 ++ longevity-1.1/longevity/R/northrop.R | 4 longevity-1.1/longevity/R/parametric.R | 253 +++++ longevity-1.1/longevity/R/plots.R | 668 +++++++++----- longevity-1.1/longevity/R/simulation.R | 1 longevity-1.1/longevity/R/threshstab.R | 4 longevity-1.1/longevity/build/partial.rdb |binary longevity-1.1/longevity/build/vignette.rds |binary longevity-1.1/longevity/inst/doc/introduction.R | 4 longevity-1.1/longevity/inst/doc/introduction.Rmd | 15 longevity-1.1/longevity/inst/doc/introduction.html | 48 - longevity-1.1/longevity/inst/doc/nonparametric.html | 18 longevity-1.1/longevity/inst/tinytest/test-S3methods.R | 16 longevity-1.1/longevity/inst/tinytest/test-anova.R | 90 + longevity-1.1/longevity/inst/tinytest/test-npmle.R | 18 longevity-1.1/longevity/man/beard.Rd | 21 longevity-1.1/longevity/man/dot-censTruncLimitsDtrunc.Rd |only longevity-1.1/longevity/man/dot-turnbull_em_dtrunc.Rd |only longevity-1.1/longevity/man/elife.Rd | 13 longevity-1.1/longevity/man/fit_elife.Rd | 3 longevity-1.1/longevity/man/np_elife.Rd | 3 longevity-1.1/longevity/man/plot.elife_northropcoleman.Rd | 15 longevity-1.1/longevity/man/plot.elife_par.Rd | 17 longevity-1.1/longevity/man/plot.elife_profile.Rd | 7 longevity-1.1/longevity/man/plot.elife_tstab.Rd |only longevity-1.1/longevity/man/samp_elife.Rd | 3 longevity-1.1/longevity/src/RcppExports.cpp | 44 longevity-1.1/longevity/src/npmle.cpp | 285 +++++ longevity-1.1/longevity/vignettes/introduction.Rmd | 15 42 files changed, 1618 insertions(+), 496 deletions(-)
Title: Quantile Recalibration for Regression Models
Description: Enables the diagnostics and enhancement of regression model calibration.It offers both global and local visualization tools for calibration diagnostics and provides one recalibration method: Torres R, Nott DJ, Sisson SA, Rodrigues T, Reis JG, Rodrigues GS (2024) <doi:10.48550/arXiv.2403.05756>. The method leverages on Probabilistic Integral Transform (PIT) values to both evaluate and perform the calibration of statistical models. For a more detailed description of the package, please refer to the bachelor's thesis available bellow.
Author: Carolina Musso [aut, cre, cph]
,
Ricardo Torres [aut, cph] ,
Joao Reis [aut, cph],
Guilherme Rodrigues [aut, ths, cph]
Maintainer: Carolina Musso <cmusso86@gmail.com>
Diff between recalibratiNN versions 0.2.0 dated 2024-04-15 and 0.3.0 dated 2024-07-05
DESCRIPTION | 17 ++++--- MD5 | 66 ++++++++++++++++++------------ NEWS.md | 12 +++++ R/PIT_global.R | 28 ++++++++---- R/PIT_local.R | 31 ++++++++------ R/gg_CD_global.R | 22 +++++----- R/gg_CD_local.R | 33 +++++++++------ R/gg_PIT_global.R | 26 +++++++---- R/gg_PIT_local.R | 31 ++++++++------ R/recalibrate.R | 57 ++++++++++++++----------- README.md | 44 +++++++++++++++----- build/partial.rdb |binary build/vignette.rds |only inst/REFERENCES.bib | 11 +++++ inst/doc |only inst/extdata |only man/PIT_global.Rd | 22 ++++++---- man/PIT_local.Rd | 30 ++++++++----- man/figures/README-unnamed-chunk-20-1.png |binary man/figures/README-unnamed-chunk-21-1.png |binary man/figures/disp.png |binary man/figures/ggP.png |binary man/figures/ggQ.png |binary man/figures/plot1PL.png |binary man/figures/plot2PL.png |binary man/gg_CD_global.Rd | 18 +++++--- man/gg_CD_local.Rd | 26 +++++++---- man/gg_PIT_global.Rd | 25 +++++++---- man/gg_PIT_local.Rd | 28 +++++++----- man/recalibrate.Rd | 52 ++++++++++++----------- vignettes |only 31 files changed, 364 insertions(+), 215 deletions(-)
Title: An Alternative 'Rcpp' Wrapper of 'MeCab'
Description: A plain 'Rcpp' wrapper of 'MeCab' that can segment Chinese,
Japanese, and Korean text into tokens. The main goal of this package
is to provide an alternative to 'tidytext' using morphological
analysis.
Author: Akiru Kato [aut, cre],
Shogo Ichinose [aut],
Taku Kudo [aut],
Jorge Nocedal [ctb],
Nippon Telegraph and Telephone Corporation [cph]
Maintainer: Akiru Kato <paithiov909@gmail.com>
Diff between gibasa versions 1.1.0 dated 2024-02-16 and 1.1.1 dated 2024-07-05
DESCRIPTION | 15 ++++----- MD5 | 62 +++++++++++++++++++------------------- NEWS.md | 4 ++ R/bind_lr.R | 8 +++- R/bind_tf_idf2.R | 5 +-- R/collapse_tokens.R | 5 +-- R/gibasa-package.R | 10 ++++-- R/lex_density.R | 4 +- R/mute_tokens.R | 5 +-- R/pack.R | 7 ++-- R/prettify.R | 19 +++++++---- R/tokenize.R | 15 +++++---- R/utils.R | 4 +- README.md | 33 ++++++++++++++++++-- build/partial.rdb |binary man/as_tokens.Rd | 4 +- man/bind_lr.Rd | 8 +++- man/bind_tf_idf2.Rd | 5 +-- man/collapse_tokens.Rd | 5 +-- man/gbs_tokenize.Rd | 10 +++--- man/get_dict_features.Rd | 14 ++++++-- man/ginga.Rd | 7 +++- man/lex_density.Rd | 2 - man/mute_tokens.Rd | 5 +-- man/pack.Rd | 5 +-- man/prettify.Rd | 2 - man/tokenize.Rd | 12 ++++--- src/common.h | 4 +- src/posDebug.cpp | 61 ++++++++++++++++++++----------------- src/posParallel.cpp | 51 ++++++++++++++++++------------- tests/testthat/test-other-utils.R | 2 - tests/testthat/test-tokenize.R | 14 ++++++++ 32 files changed, 251 insertions(+), 156 deletions(-)
Title: Unconstrained Optimization using the Subplex Algorithm
Description: The subplex algorithm for unconstrained optimization, developed by Tom Rowan.
Author: Aaron A. King [aut, trl, cre] ,
Tom Rowan [aut]
Maintainer: Aaron A. King <kingaa@umich.edu>
Diff between subplex versions 1.8 dated 2022-04-12 and 1.9 dated 2024-07-05
subplex-1.8/subplex/R/subplex-package.R |only subplex-1.9/subplex/DESCRIPTION | 22 +++++++-------- subplex-1.9/subplex/MD5 | 23 +++++++++------- subplex-1.9/subplex/R/package.R |only subplex-1.9/subplex/R/subplex.R | 40 +++++++---------------------- subplex-1.9/subplex/inst/NEWS | 17 ++++++++++++ subplex-1.9/subplex/inst/NEWS.Rd | 16 +++++++++++ subplex-1.9/subplex/inst/doc |only subplex-1.9/subplex/inst/tinytest |only subplex-1.9/subplex/man/subplex-package.Rd | 9 +++--- subplex-1.9/subplex/man/subplex.Rd | 32 ++++++++++------------- subplex-1.9/subplex/src/init.c | 5 ++- subplex-1.9/subplex/tests/ripple.Rout.save | 4 +- subplex-1.9/subplex/tests/rosen.Rout.save | 4 +- subplex-1.9/subplex/tests/tinytest.R |only 15 files changed, 94 insertions(+), 78 deletions(-)
Title: Read from/Write to Disk Matrices with any Data Type in a Binary
Format
Description: A mainly instrumental package meant to allow other packages whose core is written in 'C++' to read, write
and manipulate matrices in a binary format so that the memory used for them is no more than strictly needed. Its functionality
is already inside 'parallelpam' and 'scellpam', so if you have installed any of these, you do not need to install 'jmatrix'.
Using just the needed memory is not always true with 'R' matrices or vectors, since by default they are of double type. Trials
like the 'float' package have been done, but to use them you have to coerce a matrix already loaded in 'R' memory to a float matrix,
and then you can delete it. The problem comes when your computer has not memory enough to hold the matrix in the first place, so
you are forced to load it by chunks. This is the problem this package tries to address (with partial success, but this is a
difficult problem since 'R' is not a strictly typed language, which is anyway quite hard to get in an interpreted language).
This [...truncated...]
Author: Juan Domingo [aut, cre] ,
Guillermo Ayala [ctb] ,
Spanish Ministry of Science and Innovation, MCIN/AEI
<doi:10.13039/501100011033> [fnd]
Maintainer: Juan Domingo <Juan.Domingo@uv.es>
Diff between jmatrix versions 1.5 dated 2023-10-08 and 1.5.2 dated 2024-07-05
DESCRIPTION | 8 MD5 | 27 - NEWS | 6 TODO |only build/vignette.rds |binary inst/doc/jmatrix.R | 2 inst/doc/jmatrix.html | 602 ++++++++++++++++++++--------------------- inst/include/fullmatrix.h | 10 inst/include/jmatrix.h | 15 - inst/include/sparsematrix.h | 4 inst/include/symmetricmatrix.h | 4 src/fullmatrix.cpp | 62 ++-- src/jmatrix.cpp | 73 +++- src/sparsematrix.cpp | 43 +- src/symmetricmatrix.cpp | 52 ++- 15 files changed, 504 insertions(+), 404 deletions(-)
Title: Resampling Algorithms for 'mlr3' Framework
Description: A supervised learning algorithm inputs a train set,
and outputs a prediction function, which can be used on a test set.
If each data point belongs to a group
(such as geographic region, year, etc), then
how do we know if it is possible to train on one group, and predict
accurately on another group? Cross-validation can be used to determine
the extent to which this is possible, by first assigning fold IDs from
1 to K to all data (possibly using stratification, usually by group
and label). Then we loop over test sets (group/fold combinations),
train sets (same group, other groups, all groups), and compute
test/prediction accuracy for each combination. Comparing
test/prediction accuracy between same and other, we can determine the
extent to which it is possible (perfect if same/other have similar
test accuracy for each group; other is usually somewhat less accurate
than same; other can be just as bad as featureless baseline when the
groups have different patterns).
For more information,
[...truncated...]
Author: Toby Hocking [aut, cre] ,
Michel Lang [ctb] ,
Bernd Bischl [ctb] ,
Jakob Richter [ctb] ,
Patrick Schratz [ctb] ,
Giuseppe Casalicchio [ctb] ,
Stefan Coors [ctb] ,
Quay Au [ctb] ,
Martin Binder [ctb],
Florian Pfisterer [ctb] ,
Raphael Sonabend [ctb] , [...truncated...]
Maintainer: Toby Hocking <toby.hocking@r-project.org>
Diff between mlr3resampling versions 2024.4.14 dated 2024-04-16 and 2024.7.3 dated 2024-07-05
mlr3resampling-2024.4.14/mlr3resampling/inst/doc/ResamplingSameOtherCV.R |only mlr3resampling-2024.4.14/mlr3resampling/inst/doc/ResamplingSameOtherCV.Rmd |only mlr3resampling-2024.4.14/mlr3resampling/inst/doc/ResamplingSameOtherCV.html |only mlr3resampling-2024.4.14/mlr3resampling/inst/doc/ResamplingSameOtherSizesCV.R |only mlr3resampling-2024.4.14/mlr3resampling/inst/doc/ResamplingSameOtherSizesCV.Rmd |only mlr3resampling-2024.4.14/mlr3resampling/inst/doc/ResamplingSameOtherSizesCV.html |only mlr3resampling-2024.4.14/mlr3resampling/inst/doc/ResamplingVariableSizeTrainCV.R |only mlr3resampling-2024.4.14/mlr3resampling/inst/doc/ResamplingVariableSizeTrainCV.Rmd |only mlr3resampling-2024.4.14/mlr3resampling/inst/doc/ResamplingVariableSizeTrainCV.html |only mlr3resampling-2024.4.14/mlr3resampling/vignettes/ResamplingSameOtherCV.Rmd |only mlr3resampling-2024.4.14/mlr3resampling/vignettes/ResamplingSameOtherSizesCV.Rmd |only mlr3resampling-2024.4.14/mlr3resampling/vignettes/ResamplingVariableSizeTrainCV.Rmd |only mlr3resampling-2024.7.3/mlr3resampling/DESCRIPTION | 12 mlr3resampling-2024.7.3/mlr3resampling/MD5 | 55 mlr3resampling-2024.7.3/mlr3resampling/NAMESPACE | 7 mlr3resampling-2024.7.3/mlr3resampling/NEWS | 122 - mlr3resampling-2024.7.3/mlr3resampling/R/ResamplingBase.R | 166 +- mlr3resampling-2024.7.3/mlr3resampling/R/ResamplingSameOtherCV.R | 242 +-- mlr3resampling-2024.7.3/mlr3resampling/R/ResamplingSameOtherSizesCV.R | 348 ++-- mlr3resampling-2024.7.3/mlr3resampling/R/ResamplingVariableSizeTrainCV.R | 189 +- mlr3resampling-2024.7.3/mlr3resampling/R/score.R | 28 mlr3resampling-2024.7.3/mlr3resampling/R/zzz.R |only mlr3resampling-2024.7.3/mlr3resampling/build/vignette.rds |binary mlr3resampling-2024.7.3/mlr3resampling/data/AZtrees.RData |binary mlr3resampling-2024.7.3/mlr3resampling/inst/doc/Newer_resamplers.R |only mlr3resampling-2024.7.3/mlr3resampling/inst/doc/Newer_resamplers.Rmd |only mlr3resampling-2024.7.3/mlr3resampling/inst/doc/Newer_resamplers.html |only mlr3resampling-2024.7.3/mlr3resampling/inst/doc/Older_resamplers.R |only mlr3resampling-2024.7.3/mlr3resampling/inst/doc/Older_resamplers.Rmd |only mlr3resampling-2024.7.3/mlr3resampling/inst/doc/Older_resamplers.html |only mlr3resampling-2024.7.3/mlr3resampling/man/AZtrees.Rd | 118 - mlr3resampling-2024.7.3/mlr3resampling/man/ResamplingSameOtherCV.Rd | 337 ++-- mlr3resampling-2024.7.3/mlr3resampling/man/ResamplingSameOtherSizesCV.Rd | 413 ++--- mlr3resampling-2024.7.3/mlr3resampling/man/ResamplingVariableSizeTrainCV.Rd | 311 +-- mlr3resampling-2024.7.3/mlr3resampling/man/score.Rd | 150 - mlr3resampling-2024.7.3/mlr3resampling/tests/testthat.R | 4 mlr3resampling-2024.7.3/mlr3resampling/tests/testthat/test-CRAN.R | 784 +++++----- mlr3resampling-2024.7.3/mlr3resampling/vignettes/Newer_resamplers.Rmd |only mlr3resampling-2024.7.3/mlr3resampling/vignettes/Older_resamplers.Rmd |only 39 files changed, 1653 insertions(+), 1633 deletions(-)
More information about mlr3resampling at CRAN
Permanent link
Title: Read Mouse Genome Informatics Reports
Description: Provides readers for easy and consistent importing of
Mouse Genome Informatics (MGI) report files:
<https://www.informatics.jax.org/downloads/reports/index.html>. These data
are provided by Baldarelli RM, Smith CL, Ringwald M, Richardson JE, Bult CJ,
Mouse Genome Informatics Group (2024) <doi:10.1093/genetics/iyae031>.
Author: Ramiro Magno [aut, cre] ,
David Shaw [aut] ,
Isabel Duarte [aut] ,
Ismail Gbadamosi [aut] ,
Ali Jawaid [aut] ,
Nencki Institute of Experimental Biology [fnd],
University of Algarve [fnd],
The Jackson Laboratory [fnd],
Pattern Institute [cph, fnd]
Maintainer: Ramiro Magno <rmagno@pattern.institute>
Diff between mgi.report.reader versions 0.0.1 dated 2024-06-28 and 0.1.2 dated 2024-07-05
mgi.report.reader-0.0.1/mgi.report.reader/R/data.R |only mgi.report.reader-0.0.1/mgi.report.reader/R/report_column_processing.R |only mgi.report.reader-0.0.1/mgi.report.reader/data/feature_types.rda |only mgi.report.reader-0.0.1/mgi.report.reader/man/read_mrk_list_rpt.Rd |only mgi.report.reader-0.1.2/mgi.report.reader/DESCRIPTION | 19 mgi.report.reader-0.1.2/mgi.report.reader/MD5 | 70 mgi.report.reader-0.1.2/mgi.report.reader/NAMESPACE | 11 mgi.report.reader-0.1.2/mgi.report.reader/NEWS.md | 23 mgi.report.reader-0.1.2/mgi.report.reader/R/browser.R |only mgi.report.reader-0.1.2/mgi.report.reader/R/col_to_lst_col.R |only mgi.report.reader-0.1.2/mgi.report.reader/R/crosswalks.R |only mgi.report.reader-0.1.2/mgi.report.reader/R/docs.R |only mgi.report.reader-0.1.2/mgi.report.reader/R/feature_types.R |only mgi.report.reader-0.1.2/mgi.report.reader/R/is_url.R |only mgi.report.reader-0.1.2/mgi.report.reader/R/lst_col_na_to_empty.R |only mgi.report.reader-0.1.2/mgi.report.reader/R/marker_types.R | 10 mgi.report.reader-0.1.2/mgi.report.reader/R/predicates.R |only mgi.report.reader-0.1.2/mgi.report.reader/R/read_gene_model_coord_rpt.R |only mgi.report.reader-0.1.2/mgi.report.reader/R/read_gtgup_rpt.R |only mgi.report.reader-0.1.2/mgi.report.reader/R/read_mgi_biotype_conflict_rpt.R |only mgi.report.reader-0.1.2/mgi.report.reader/R/read_mgi_inter_pro_domains_rpt.R |only mgi.report.reader-0.1.2/mgi.report.reader/R/read_mrk_coord_rpt.R |only mgi.report.reader-0.1.2/mgi.report.reader/R/read_mrk_ensembl_rpt.R |only mgi.report.reader-0.1.2/mgi.report.reader/R/read_mrk_genetrap_rpt.R |only mgi.report.reader-0.1.2/mgi.report.reader/R/read_mrk_list1_rpt.R |only mgi.report.reader-0.1.2/mgi.report.reader/R/read_mrk_list2_rpt.R |only mgi.report.reader-0.1.2/mgi.report.reader/R/read_mrk_sequence_rpt.R |only mgi.report.reader-0.1.2/mgi.report.reader/R/read_mrk_swissprot_rpt.R |only mgi.report.reader-0.1.2/mgi.report.reader/R/read_mrk_swissprot_tr_embl_rpt.R |only mgi.report.reader-0.1.2/mgi.report.reader/R/read_prb_primerseq_rpt.R |only mgi.report.reader-0.1.2/mgi.report.reader/R/read_report.R | 737 ---------- mgi.report.reader-0.1.2/mgi.report.reader/R/report_source.R |only mgi.report.reader-0.1.2/mgi.report.reader/R/reports.R |only mgi.report.reader-0.1.2/mgi.report.reader/R/reports_readers.R |only mgi.report.reader-0.1.2/mgi.report.reader/R/sure.R |only mgi.report.reader-0.1.2/mgi.report.reader/R/sysdata.rda |binary mgi.report.reader-0.1.2/mgi.report.reader/R/variable_labels.R |only mgi.report.reader-0.1.2/mgi.report.reader/R/variable_types.R |only mgi.report.reader-0.1.2/mgi.report.reader/README.md | 119 - mgi.report.reader-0.1.2/mgi.report.reader/data/feature_type_definitions.rda |only mgi.report.reader-0.1.2/mgi.report.reader/data/reports.rda |only mgi.report.reader-0.1.2/mgi.report.reader/man/common-args.Rd |only mgi.report.reader-0.1.2/mgi.report.reader/man/convert_to_marker_id.Rd |only mgi.report.reader-0.1.2/mgi.report.reader/man/feature_type_definitions.Rd |only mgi.report.reader-0.1.2/mgi.report.reader/man/feature_types.Rd | 30 mgi.report.reader-0.1.2/mgi.report.reader/man/is_mgi_identifier.Rd |only mgi.report.reader-0.1.2/mgi.report.reader/man/marker_types.Rd |only mgi.report.reader-0.1.2/mgi.report.reader/man/mgi.report.reader-package.Rd | 4 mgi.report.reader-0.1.2/mgi.report.reader/man/mgi_base_url.Rd |only mgi.report.reader-0.1.2/mgi.report.reader/man/mgi_reports_base_url.Rd |only mgi.report.reader-0.1.2/mgi.report.reader/man/mgi_reports_index_url.Rd |only mgi.report.reader-0.1.2/mgi.report.reader/man/open_marker_in_mgi.Rd |only mgi.report.reader-0.1.2/mgi.report.reader/man/read_report.Rd | 90 - mgi.report.reader-0.1.2/mgi.report.reader/man/report-attributes.Rd |only mgi.report.reader-0.1.2/mgi.report.reader/man/report_last_modified.Rd |only mgi.report.reader-0.1.2/mgi.report.reader/man/report_source.Rd |only mgi.report.reader-0.1.2/mgi.report.reader/man/reports.Rd |only mgi.report.reader-0.1.2/mgi.report.reader/man/sure.Rd |only mgi.report.reader-0.1.2/mgi.report.reader/man/update_marker_symbol.Rd |only mgi.report.reader-0.1.2/mgi.report.reader/tests |only 60 files changed, 320 insertions(+), 793 deletions(-)
More information about mgi.report.reader at CRAN
Permanent link
Title: Doubly Robust Difference-in-Differences Estimators
Description: Implements the locally efficient doubly robust difference-in-differences (DiD)
estimators for the average treatment effect proposed by Sant'Anna and Zhao (2020)
<doi:10.1016/j.jeconom.2020.06.003>. The estimator combines inverse probability weighting and outcome
regression estimators (also implemented in the package) to form estimators with
more attractive statistical properties. Two different estimation methods can be used
to estimate the nuisance functions.
Author: Pedro H. C. Sant'Anna [aut, cre],
Jun Zhao [aut]
Maintainer: Pedro H. C. Sant'Anna <pedrosantanna@causal-solutions.com>
Diff between DRDID versions 1.0.6 dated 2023-05-18 and 1.0.7 dated 2024-07-05
DRDID-1.0.6/DRDID/R/drdid_package.R |only DRDID-1.0.7/DRDID/DESCRIPTION | 15 ++-- DRDID-1.0.7/DRDID/MD5 | 92 +++++++++++++++-------------- DRDID-1.0.7/DRDID/NAMESPACE | 2 DRDID-1.0.7/DRDID/NEWS.md | 4 + DRDID-1.0.7/DRDID/R/DRDID-package.R |only DRDID-1.0.7/DRDID/R/RcppExports.R |only DRDID-1.0.7/DRDID/R/aipw.did.panel.R | 1 DRDID-1.0.7/DRDID/R/aipw_did_rc.R | 1 DRDID-1.0.7/DRDID/R/aipw_did_rc1.R | 2 DRDID-1.0.7/DRDID/R/drdid.R | 2 DRDID-1.0.7/DRDID/R/drdid_imp_panel.R | 5 + DRDID-1.0.7/DRDID/R/drdid_imp_rc.R | 5 + DRDID-1.0.7/DRDID/R/drdid_imp_rc1.R | 3 DRDID-1.0.7/DRDID/R/drdid_panel.R | 5 + DRDID-1.0.7/DRDID/R/drdid_rc.R | 5 + DRDID-1.0.7/DRDID/R/drdid_rc1.R | 4 - DRDID-1.0.7/DRDID/R/ipw_did_panel.R | 5 - DRDID-1.0.7/DRDID/R/ipw_did_rc.R | 4 - DRDID-1.0.7/DRDID/R/ipwdid.R | 2 DRDID-1.0.7/DRDID/R/ordid.R | 2 DRDID-1.0.7/DRDID/R/pre_process_drdid.R | 20 +++--- DRDID-1.0.7/DRDID/R/reg_did_panel.R | 4 - DRDID-1.0.7/DRDID/R/reg_did_rc.R | 5 - DRDID-1.0.7/DRDID/R/std_ipw_did_panel.R | 4 - DRDID-1.0.7/DRDID/R/std_ipw_did_rc.R | 4 - DRDID-1.0.7/DRDID/R/twfe_did_panel.R | 4 - DRDID-1.0.7/DRDID/R/twfe_did_rc.R | 4 - DRDID-1.0.7/DRDID/R/wols_rc.R | 2 DRDID-1.0.7/DRDID/R/zzz.R |only DRDID-1.0.7/DRDID/README.md | 10 +-- DRDID-1.0.7/DRDID/man/DRDID-package.Rd | 35 ++++++----- DRDID-1.0.7/DRDID/man/drdid.Rd | 2 DRDID-1.0.7/DRDID/man/drdid_imp_panel.Rd | 2 DRDID-1.0.7/DRDID/man/drdid_imp_rc.Rd | 2 DRDID-1.0.7/DRDID/man/drdid_panel.Rd | 2 DRDID-1.0.7/DRDID/man/drdid_rc.Rd | 2 DRDID-1.0.7/DRDID/man/drdid_rc1.Rd | 2 DRDID-1.0.7/DRDID/man/ipw_did_panel.Rd | 2 DRDID-1.0.7/DRDID/man/ipw_did_rc.Rd | 2 DRDID-1.0.7/DRDID/man/ipwdid.Rd | 2 DRDID-1.0.7/DRDID/man/ordid.Rd | 2 DRDID-1.0.7/DRDID/man/reg_did_panel.Rd | 2 DRDID-1.0.7/DRDID/man/reg_did_rc.Rd | 2 DRDID-1.0.7/DRDID/man/std_ipw_did_panel.Rd | 2 DRDID-1.0.7/DRDID/man/std_ipw_did_rc.Rd | 2 DRDID-1.0.7/DRDID/man/twfe_did_panel.Rd | 2 DRDID-1.0.7/DRDID/man/twfe_did_rc.Rd | 2 DRDID-1.0.7/DRDID/src |only 49 files changed, 170 insertions(+), 113 deletions(-)
Title: Canonical Correlation for Survey Data
Description: Performs canonical correlation for survey data, including
multiple tests of significance for secondary canonical correlations.
A key feature of this package is that it incorporates survey data structure
directly in a novel test of significance via a sequence of simple linear
regression models on the canonical variates. See reference - Cruz-Cano,
Cohen, and Mead-Morse (2024) "Canonical Correlation Analysis of Survey data: the SurveyCC R package"
The R Journal under review.
Author: Raul Cruz-Cano [aut, cre]
Maintainer: Raul Cruz-Cano <raulcruz@iu.edu>
Diff between SurveyCC versions 0.1.1 dated 2024-01-09 and 0.2.1 dated 2024-07-05
DESCRIPTION | 8 +- MD5 | 21 +++---- NAMESPACE | 1 NEWS.md | 4 + R/cancor_tables.R | 4 - R/plot_canon.R | 59 +++++++++++++++----- R/surv_reg.R | 22 ------- R/surveycc.R | 70 ++++++++++-------------- man/plot.surveycc.Rd |only man/reducedNYTS2021data.Rd | 14 ++-- man/reducedPATHdata.Rd | 14 ++-- man/surveycc.Rd | 129 ++++++++++++++++++++------------------------- 12 files changed, 167 insertions(+), 179 deletions(-)
Title: Bayesian Gaussian Graphical Models
Description: Fit Bayesian Gaussian graphical models. The methods are separated into
two Bayesian approaches for inference: hypothesis testing and estimation. There are
extensions for confirmatory hypothesis testing, comparing Gaussian graphical models,
and node wise predictability. These methods were recently introduced in the Gaussian
graphical model literature, including
Williams (2019) <doi:10.31234/osf.io/x8dpr>,
Williams and Mulder (2019) <doi:10.31234/osf.io/ypxd8>,
Williams, Rast, Pericchi, and Mulder (2019) <doi:10.31234/osf.io/yt386>.
Author: Donald Williams [aut],
Joris Mulder [aut],
Philippe Rast [aut, cre]
Maintainer: Philippe Rast <rast.ph@gmail.com>
Diff between BGGM versions 2.1.2 dated 2024-06-22 and 2.1.3 dated 2024-07-05
DESCRIPTION | 6 ++--- MD5 | 44 +++++++++++++++++++-------------------- NEWS.md | 5 ++++ R/confirm.R | 4 +-- R/estimate.R | 4 +-- R/explore.default.R | 4 +-- R/ggm_compare_bf.default.R | 6 ++--- R/ggm_compare_confirm.R | 4 +-- R/ggm_compare_estimate.default.R | 6 +---- R/helpers.R | 20 +++++++++-------- R/plot_prior.R | 4 +-- R/var_estimate.R | 4 +-- build/partial.rdb |binary inst/doc/ppc_custom.html | 12 +++++----- man/confirm.Rd | 4 +-- man/estimate.Rd | 4 +-- man/explore.Rd | 4 +-- man/ggm_compare_confirm.Rd | 4 +-- man/ggm_compare_estimate.Rd | 6 +---- man/ggm_compare_explore.Rd | 6 ++--- man/plot_prior.Rd | 4 +-- man/var_estimate.Rd | 4 +-- src/bggm_fast.cpp | 40 +++++++++++++++++------------------ 23 files changed, 101 insertions(+), 98 deletions(-)
Title: 'Amber' Electronic Data Capture Client
Description: 'Amber' is a server application for capturing electronic data records.
Rich forms are used to collect data. This 'Amber' client allows
to perform data extraction for reporting or data transfer at persistent location
purposes.
Author: Yannick Marcon [aut, cre] ,
OBiBa group [cph]
Maintainer: Yannick Marcon <yannick.marcon@obiba.org>
Diff between amberr versions 1.0.0 dated 2023-12-13 and 1.1.0 dated 2024-07-05
DESCRIPTION | 8 ++-- MD5 | 51 +++++++++++++++--------------- R/amber.interviews.R | 34 ++++++++++++++++++-- inst/examples/amber-interview-queries.R | 13 ++++++- inst/examples/amber-interviews-analysis.R |only man/amber.campaign.Rd | 10 ++--- man/amber.campaigns.Rd | 10 ++--- man/amber.case_report_export.Rd | 12 +++---- man/amber.case_report_form.Rd | 10 ++--- man/amber.case_report_forms.Rd | 10 ++--- man/amber.case_reports.Rd | 12 +++---- man/amber.form.Rd | 10 ++--- man/amber.form_revision.Rd | 10 ++--- man/amber.form_revisions.Rd | 10 ++--- man/amber.forms.Rd | 12 +++---- man/amber.group.Rd | 4 +- man/amber.groups.Rd | 4 +- man/amber.interview_design.Rd | 10 ++--- man/amber.interview_designs.Rd | 10 ++--- man/amber.interview_export.Rd | 18 +++++++--- man/amber.interviews.Rd | 20 +++++++---- man/amber.participant.Rd | 10 ++--- man/amber.participants.Rd | 15 +++++--- man/amber.studies.Rd | 12 +++---- man/amber.study.Rd | 12 +++---- man/amber.user.Rd | 2 - man/amber.users.Rd | 2 - 27 files changed, 192 insertions(+), 139 deletions(-)
Title: Client for US Treasury XML Feed and Published Data
Description: Download daily interest rates from the US Treasury XML feed.
Leveraging
<https://home.treasury.gov/treasury-daily-interest-rate-xml-feed>,
this package serves as a wrapper, facilitating the retrieval of daily
treasury rates across various categories, including par yield curves,
treasury bills, long-term rates, and real yield curves.
Author: Maximilian Muecke [aut, cre]
Maintainer: Maximilian Muecke <muecke.maximilian@gmail.com>
Diff between treasury versions 0.1.0 dated 2024-03-22 and 0.2.0 dated 2024-07-05
treasury-0.1.0/treasury/R/feed.R |only treasury-0.1.0/treasury/man/figures/README-demo-1.png |only treasury-0.1.0/treasury/tests/testthat/test-feed.R |only treasury-0.2.0/treasury/DESCRIPTION | 12 +-- treasury-0.2.0/treasury/MD5 | 34 ++++---- treasury-0.2.0/treasury/NAMESPACE | 3 treasury-0.2.0/treasury/NEWS.md | 8 ++ treasury-0.2.0/treasury/R/interest-rate.R |only treasury-0.2.0/treasury/R/treasury-package.R | 2 treasury-0.2.0/treasury/R/utils.R | 9 ++ treasury-0.2.0/treasury/R/yield-curve.R |only treasury-0.2.0/treasury/README.md | 46 +++++------- treasury-0.2.0/treasury/man/figures/README-plot-1.png |only treasury-0.2.0/treasury/man/tr_bill_rates.Rd | 33 ++++++-- treasury-0.2.0/treasury/man/tr_curve_rate.Rd |only treasury-0.2.0/treasury/man/tr_long_term_rate.Rd | 24 +++--- treasury-0.2.0/treasury/man/tr_real_long_term.Rd | 21 ++--- treasury-0.2.0/treasury/man/tr_real_yield_curve.Rd | 25 +++--- treasury-0.2.0/treasury/man/tr_yield_curve.Rd | 23 +++--- treasury-0.2.0/treasury/man/treasury-package.Rd | 2 treasury-0.2.0/treasury/tests/testthat/fixtures |only treasury-0.2.0/treasury/tests/testthat/test-interest-rate.R |only treasury-0.2.0/treasury/tests/testthat/test-yield-curve.R |only 23 files changed, 146 insertions(+), 96 deletions(-)
Title: Tidy Dataframes and Expressions with Statistical Details
Description: Utilities for producing dataframes with rich details for the
most common types of statistical approaches and tests: parametric,
nonparametric, robust, and Bayesian t-test, one-way ANOVA, correlation
analyses, contingency table analyses, and meta-analyses. The functions
are pipe-friendly and provide a consistent syntax to work with tidy
data. These dataframes additionally contain expressions with
statistical details, and can be used in graphing packages. This
package also forms the statistical processing backend for
'ggstatsplot'. References: Patil (2021) <doi:10.21105/joss.03236>.
Author: Indrajeet Patil [cre, aut, cph]
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between statsExpressions versions 1.5.4 dated 2024-03-20 and 1.5.5 dated 2024-07-05
statsExpressions-1.5.4/statsExpressions/man/stats_type_switch.Rd |only statsExpressions-1.5.5/statsExpressions/DESCRIPTION | 42 statsExpressions-1.5.5/statsExpressions/LICENSE | 4 statsExpressions-1.5.5/statsExpressions/MD5 | 92 - statsExpressions-1.5.5/statsExpressions/NAMESPACE | 1 statsExpressions-1.5.5/statsExpressions/NEWS.md | 10 statsExpressions-1.5.5/statsExpressions/R/add-expression-col.R | 356 ++--- statsExpressions-1.5.5/statsExpressions/R/centrality-description.R | 151 +- statsExpressions-1.5.5/statsExpressions/R/contingency-table.R | 302 ++-- statsExpressions-1.5.5/statsExpressions/R/corr-test.R | 111 - statsExpressions-1.5.5/statsExpressions/R/helpers-easystats.R | 129 +- statsExpressions-1.5.5/statsExpressions/R/long-to-wide-converter.R | 187 +-- statsExpressions-1.5.5/statsExpressions/R/meta-analysis.R | 193 +-- statsExpressions-1.5.5/statsExpressions/R/one-sample-test.R | 203 +-- statsExpressions-1.5.5/statsExpressions/R/oneway-anova.R | 571 ++++----- statsExpressions-1.5.5/statsExpressions/R/pairwise-comparisons.R | 613 +++++----- statsExpressions-1.5.5/statsExpressions/R/switch-functions.R | 25 statsExpressions-1.5.5/statsExpressions/R/tidy-model-expressions.R | 243 ++- statsExpressions-1.5.5/statsExpressions/R/two-sample-test.R | 270 ++-- statsExpressions-1.5.5/statsExpressions/README.md | 233 +-- statsExpressions-1.5.5/statsExpressions/build/vignette.rds |binary statsExpressions-1.5.5/statsExpressions/inst/CITATION | 1 statsExpressions-1.5.5/statsExpressions/inst/WORDLIST | 2 statsExpressions-1.5.5/statsExpressions/inst/doc/statsExpressions.html | 139 +- statsExpressions-1.5.5/statsExpressions/inst/doc/stats_details.html | 205 +-- statsExpressions-1.5.5/statsExpressions/man/add_expression_col.Rd | 16 statsExpressions-1.5.5/statsExpressions/man/centrality_description.Rd | 4 statsExpressions-1.5.5/statsExpressions/man/corr_test.Rd | 4 statsExpressions-1.5.5/statsExpressions/man/examples/examples-contingency-table.R | 158 +- statsExpressions-1.5.5/statsExpressions/man/extract_stats_type.Rd |only statsExpressions-1.5.5/statsExpressions/man/figures/README-anova_parametric2-1.png |binary statsExpressions-1.5.5/statsExpressions/man/figures/README-anova_rob1-1.png |binary statsExpressions-1.5.5/statsExpressions/man/long_to_wide_converter.Rd | 5 statsExpressions-1.5.5/statsExpressions/man/meta_analysis.Rd | 6 statsExpressions-1.5.5/statsExpressions/man/one_sample_test.Rd | 4 statsExpressions-1.5.5/statsExpressions/man/oneway_anova.Rd | 8 statsExpressions-1.5.5/statsExpressions/man/pairwise_comparisons.Rd | 4 statsExpressions-1.5.5/statsExpressions/man/tidy_model_expressions.Rd | 4 statsExpressions-1.5.5/statsExpressions/man/tidy_model_parameters.Rd | 5 statsExpressions-1.5.5/statsExpressions/man/two_sample_test.Rd | 4 statsExpressions-1.5.5/statsExpressions/tests/testthat/_snaps/centrality-description.md | 6 statsExpressions-1.5.5/statsExpressions/tests/testthat/test-centrality-description.R | 127 +- statsExpressions-1.5.5/statsExpressions/tests/testthat/test-meta-random-bayes.R | 41 statsExpressions-1.5.5/statsExpressions/tests/testthat/test-one-two-sample-dataframes.R | 196 +-- statsExpressions-1.5.5/statsExpressions/tests/testthat/test-oneway-anova-bayes.R | 191 +-- statsExpressions-1.5.5/statsExpressions/tests/testthat/test-stats-type-switch.R | 14 statsExpressions-1.5.5/statsExpressions/tests/testthat/test-tidy-model-expressions.R | 4 statsExpressions-1.5.5/statsExpressions/vignettes/paper.bib | 2 48 files changed, 2491 insertions(+), 2395 deletions(-)
More information about statsExpressions at CRAN
Permanent link
Title: Methods to Convert R Data to YAML and Back
Description: Implements the 'libyaml' 'YAML' 1.1 parser and emitter
(<https://pyyaml.org/wiki/LibYAML>) for R.
Author: Shawn P Garbett [aut], Jeremy Stephens [aut, cre], Kirill Simonov [aut], Yihui Xie [ctb],
Zhuoer Dong [ctb], Hadley Wickham [ctb], Jeffrey Horner [ctb], reikoch [ctb],
Will Beasley [ctb], Brendan O'Connor [ctb], Gregory R. Warnes [ctb],
Michael Quinn [...truncated...]
Maintainer: Shawn Garbett <shawn.garbett@vumc.org>
Diff between yaml versions 2.3.8 dated 2023-12-11 and 2.3.9 dated 2024-07-05
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- man/yaml.load.Rd | 6 +++--- src/r_emit.c | 21 +++++++++++++++++---- src/r_ext.h | 1 + 5 files changed, 30 insertions(+), 16 deletions(-)
Title: R6-Based ML Survival Learners for 'mlexperiments'
Description: Enhances 'mlexperiments'
<https://CRAN.R-project.org/package=mlexperiments> with additional
machine learning ('ML') learners for survival analysis. The package
provides R6-based survival learners for the following algorithms:
'glmnet' <https://CRAN.R-project.org/package=glmnet>, 'ranger'
<https://CRAN.R-project.org/package=ranger>, 'xgboost'
<https://CRAN.R-project.org/package=xgboost>, and 'rpart'
<https://CRAN.R-project.org/package=rpart>. These can be used directly
with the 'mlexperiments' R package.
Author: Lorenz A. Kapsner [cre, aut, cph]
Maintainer: Lorenz A. Kapsner <lorenz.kapsner@gmail.com>
Diff between mlsurvlrnrs versions 0.0.3 dated 2024-03-08 and 0.0.4 dated 2024-07-05
mlsurvlrnrs-0.0.3/mlsurvlrnrs/inst/doc/mlsurvlrnrs_glmnet_survival.Rmd |only mlsurvlrnrs-0.0.3/mlsurvlrnrs/inst/doc/mlsurvlrnrs_ranger_survival.Rmd |only mlsurvlrnrs-0.0.3/mlsurvlrnrs/inst/doc/mlsurvlrnrs_rpart_survival.Rmd |only mlsurvlrnrs-0.0.3/mlsurvlrnrs/inst/doc/mlsurvlrnrs_xgboost_survival_aft.Rmd |only mlsurvlrnrs-0.0.3/mlsurvlrnrs/inst/doc/mlsurvlrnrs_xgboost_survival_cox.Rmd |only mlsurvlrnrs-0.0.3/mlsurvlrnrs/vignettes/mlsurvlrnrs_glmnet_survival.Rmd |only mlsurvlrnrs-0.0.3/mlsurvlrnrs/vignettes/mlsurvlrnrs_ranger_survival.Rmd |only mlsurvlrnrs-0.0.3/mlsurvlrnrs/vignettes/mlsurvlrnrs_rpart_survival.Rmd |only mlsurvlrnrs-0.0.3/mlsurvlrnrs/vignettes/mlsurvlrnrs_xgboost_survival_aft.Rmd |only mlsurvlrnrs-0.0.3/mlsurvlrnrs/vignettes/mlsurvlrnrs_xgboost_survival_cox.Rmd |only mlsurvlrnrs-0.0.4/mlsurvlrnrs/DESCRIPTION | 14 mlsurvlrnrs-0.0.4/mlsurvlrnrs/MD5 | 66 mlsurvlrnrs-0.0.4/mlsurvlrnrs/R/learner_surv_glmnet_cox.R | 526 ++-- mlsurvlrnrs-0.0.4/mlsurvlrnrs/R/learner_surv_ranger_cox.R | 2 mlsurvlrnrs-0.0.4/mlsurvlrnrs/R/learner_surv_xgboost_aft.R | 504 ++-- mlsurvlrnrs-0.0.4/mlsurvlrnrs/R/learner_surv_xgboost_cox.R | 332 +- mlsurvlrnrs-0.0.4/mlsurvlrnrs/build/vignette.rds |binary mlsurvlrnrs-0.0.4/mlsurvlrnrs/inst/doc/mlsurvlrnrs_glmnet_survival.R | 880 +++---- mlsurvlrnrs-0.0.4/mlsurvlrnrs/inst/doc/mlsurvlrnrs_glmnet_survival.html | 1198 +++------- mlsurvlrnrs-0.0.4/mlsurvlrnrs/inst/doc/mlsurvlrnrs_glmnet_survival.qmd |only mlsurvlrnrs-0.0.4/mlsurvlrnrs/inst/doc/mlsurvlrnrs_ranger_survival.R | 774 +++--- mlsurvlrnrs-0.0.4/mlsurvlrnrs/inst/doc/mlsurvlrnrs_ranger_survival.html | 1097 +++------ mlsurvlrnrs-0.0.4/mlsurvlrnrs/inst/doc/mlsurvlrnrs_ranger_survival.qmd |only mlsurvlrnrs-0.0.4/mlsurvlrnrs/inst/doc/mlsurvlrnrs_rpart_survival.R | 736 +++--- mlsurvlrnrs-0.0.4/mlsurvlrnrs/inst/doc/mlsurvlrnrs_rpart_survival.html | 1059 +++----- mlsurvlrnrs-0.0.4/mlsurvlrnrs/inst/doc/mlsurvlrnrs_rpart_survival.qmd |only mlsurvlrnrs-0.0.4/mlsurvlrnrs/inst/doc/mlsurvlrnrs_xgboost_survival_aft.R | 788 +++--- mlsurvlrnrs-0.0.4/mlsurvlrnrs/inst/doc/mlsurvlrnrs_xgboost_survival_aft.html | 1112 +++------ mlsurvlrnrs-0.0.4/mlsurvlrnrs/inst/doc/mlsurvlrnrs_xgboost_survival_aft.qmd |only mlsurvlrnrs-0.0.4/mlsurvlrnrs/inst/doc/mlsurvlrnrs_xgboost_survival_cox.R | 768 +++--- mlsurvlrnrs-0.0.4/mlsurvlrnrs/inst/doc/mlsurvlrnrs_xgboost_survival_cox.html | 1092 +++------ mlsurvlrnrs-0.0.4/mlsurvlrnrs/inst/doc/mlsurvlrnrs_xgboost_survival_cox.qmd |only mlsurvlrnrs-0.0.4/mlsurvlrnrs/man/LearnerSurvCoxPHCox.Rd | 16 mlsurvlrnrs-0.0.4/mlsurvlrnrs/man/LearnerSurvGlmnetCox.Rd | 20 mlsurvlrnrs-0.0.4/mlsurvlrnrs/man/LearnerSurvRangerCox.Rd | 20 mlsurvlrnrs-0.0.4/mlsurvlrnrs/man/LearnerSurvRpartCox.Rd | 46 mlsurvlrnrs-0.0.4/mlsurvlrnrs/man/LearnerSurvXgboostAft.Rd | 30 mlsurvlrnrs-0.0.4/mlsurvlrnrs/man/LearnerSurvXgboostCox.Rd | 22 mlsurvlrnrs-0.0.4/mlsurvlrnrs/man/c_index.Rd | 6 mlsurvlrnrs-0.0.4/mlsurvlrnrs/vignettes/mlsurvlrnrs_glmnet_survival.qmd |only mlsurvlrnrs-0.0.4/mlsurvlrnrs/vignettes/mlsurvlrnrs_ranger_survival.qmd |only mlsurvlrnrs-0.0.4/mlsurvlrnrs/vignettes/mlsurvlrnrs_rpart_survival.qmd |only mlsurvlrnrs-0.0.4/mlsurvlrnrs/vignettes/mlsurvlrnrs_xgboost_survival_aft.qmd |only mlsurvlrnrs-0.0.4/mlsurvlrnrs/vignettes/mlsurvlrnrs_xgboost_survival_cox.qmd |only 44 files changed, 4933 insertions(+), 6175 deletions(-)
Title: Multivariate Cauchy Distribution; Kullback-Leibler Divergence
Description: Distance between multivariate Cauchy distributions, as presented by N. Bouhlel and D. Rousseau (2022) <doi:10.3390/e24060838>. Manipulation of multivariate Cauchy distributions.
Author: Pierre Santagostini [aut, cre],
Nizar Bouhlel [aut]
Maintainer: Pierre Santagostini <pierre.santagostini@agrocampus-ouest.fr>
Diff between mcauchyd versions 1.2.0 dated 2024-01-10 and 1.3.2 dated 2024-07-05
mcauchyd-1.2.0/mcauchyd/R/mcauchyd.R |only mcauchyd-1.3.2/mcauchyd/DESCRIPTION | 10 mcauchyd-1.3.2/mcauchyd/MD5 | 27 mcauchyd-1.3.2/mcauchyd/NAMESPACE | 3 mcauchyd-1.3.2/mcauchyd/R/dlauricella.R |only mcauchyd-1.3.2/mcauchyd/R/kldcauchy.R | 438 ++-------------- mcauchyd-1.3.2/mcauchyd/R/lnpochhammer.R |only mcauchyd-1.3.2/mcauchyd/R/mcauchyd-package.R |only mcauchyd-1.3.2/mcauchyd/R/plotmcd.R | 8 mcauchyd-1.3.2/mcauchyd/R/rmcd.R | 2 mcauchyd-1.3.2/mcauchyd/build/partial.rdb |binary mcauchyd-1.3.2/mcauchyd/man/kldcauchy.Rd | 10 mcauchyd-1.3.2/mcauchyd/man/lnpochhammer.Rd |only mcauchyd-1.3.2/mcauchyd/man/mcauchyd-package.Rd | 11 mcauchyd-1.3.2/mcauchyd/man/plotmcd.Rd | 8 mcauchyd-1.3.2/mcauchyd/man/rmcd.Rd | 2 mcauchyd-1.3.2/mcauchyd/tests/testthat/test_kldcauchy.R | 21 17 files changed, 142 insertions(+), 398 deletions(-)
Title: Machine Learning
Description: Machine learning, containing several algorithms for supervised and unsupervised classification, in addition to a function that plots the Receiver Operating Characteristic (ROC) and Precision-Recall (PRC) curve graphs, and also a function that returns several metrics used for model evaluation, the latter can be used in ranking results from other packs.
Author: Paulo Cesar Ossani [aut, cre]
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between Kira versions 1.0.4 dated 2024-06-22 and 1.0.5 dated 2024-07-05
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++++----- NAMESPACE | 2 +- R/brute.force.R |only R/vote.R |only man/Kira-package.Rd | 6 ++++-- man/brute.force.Rd |only man/knn.Rd | 2 +- man/regression.Rd | 2 +- man/vote.Rd |only 10 files changed, 20 insertions(+), 14 deletions(-)
Title: Covariance Measure Tests for Conditional Independence
Description: Covariance measure tests for conditional independence testing
against conditional covariance and nonlinear conditional mean alternatives.
Contains versions of the generalised covariance measure test
(Shah and Peters, 2020, <doi:10.1214/19-aos1857>) and projected covariance
measure test (Lundborg et al., 2023, <doi:10.48550/arXiv.2211.02039>).
Applications can be found in
Kook and Lundborg (2024, <doi:10.48550/arXiv.2402.14416>).
Author: Lucas Kook [aut, cre],
Anton Rask Lundborg [ctb]
Maintainer: Lucas Kook <lucasheinrich.kook@gmail.com>
Diff between comets versions 0.0-1 dated 2024-02-26 and 0.0-2 dated 2024-07-05
DESCRIPTION | 12 +- MD5 | 26 +++-- NAMESPACE | 12 ++ R/comet.R | 11 +- R/equiv.R |only R/gcm.R | 169 +++++++++++++++++++++------------- R/pcm.R | 221 +++++++++++++++++++++++---------------------- R/regressions.R |only R/wgcm.R |only build/partial.rdb |binary man/comet.Rd | 8 - man/gcm.Rd | 45 ++++++--- man/pcm.Rd | 57 +++++++++-- man/plm_equiv_test.Rd |only man/regressions.Rd |only man/wgcm.Rd |only tests/testthat/test_main.R | 18 +++ 17 files changed, 363 insertions(+), 216 deletions(-)
Title: Read and Manipulate Camera Trap Data Packages
Description: Read and manipulate Camera Trap Data Packages ('Camtrap DP').
'Camtrap DP' (<https://camtrap-dp.tdwg.org>) is a data exchange format
for camera trap data. With 'camtrapdp' you can read, filter and
transform data (including to Darwin Core) before further analysis in
e.g. 'camtraptor' or 'camtrapR'.
Author: Peter Desmet [aut, cre] ),
Sanne Govaert [aut] ),
Pieter Huybrechts [aut] ),
Damiano Oldoni [aut] ),
Research Institute for Nature and Forest [cph]
,
LifeWatch Belgium [fnd]
Maintainer: Peter Desmet <peter.desmet@inbo.be>
Diff between camtrapdp versions 0.2.1 dated 2024-06-05 and 0.3.1 dated 2024-07-05
DESCRIPTION | 31 ++++++++----- MD5 | 69 ++++++++++++++++--------------- NAMESPACE | 1 NEWS.md | 13 +++++ R/build_taxonomy.R | 2 R/convert.R | 2 R/deployments.R | 4 - R/events.R | 4 - R/filter_deployments.R | 2 R/filter_media.R | 2 R/filter_observations.R | 2 R/locations.R | 4 - R/media.R | 4 - R/observations.R | 4 - R/print.R |only R/taxa.R | 4 - R/utils-pipe.R | 2 R/write_dwc.R | 6 +- README.md | 15 ++++-- inst/extdata/meta.xml | 4 - man/camtrapdp-package.Rd | 8 +-- man/deployments.Rd | 5 -- man/events.Rd | 5 -- man/filter_deployments.Rd | 3 - man/filter_media.Rd | 3 - man/filter_observations.Rd | 3 - man/locations.Rd | 5 -- man/media.Rd | 5 -- man/observations.Rd | 5 -- man/pipe.Rd | 2 man/print.camtrapdp.Rd |only man/taxa.Rd | 5 -- man/write_dwc.Rd | 3 - tests/testthat/_snaps/write_dwc/meta.xml | 4 - tests/testthat/helper.R | 4 - tests/testthat/test-print.R |only tests/testthat/test-write_dwc.R | 4 - 37 files changed, 128 insertions(+), 111 deletions(-)
Title: An Interface to ArcGIS Data Services
Description: Enables users of 'ArcGIS Enterprise', 'ArcGIS Online', or
'ArcGIS Platform' to read, write, publish, or manage vector and raster
data via ArcGIS location services REST API endpoints
<https://developers.arcgis.com/rest/>.
Author: Josiah Parry [aut, cre] ,
Eli Pousson [ctb] ,
Kenneth Vernon [ctb] ,
Martha Bass [ctb]
Maintainer: Josiah Parry <josiah.parry@gmail.com>
Diff between arcgislayers versions 0.2.0 dated 2024-02-27 and 0.3.0 dated 2024-07-05
DESCRIPTION | 14 MD5 | 39 +- NAMESPACE | 3 NEWS.md | 14 R/arc-open.R | 90 ++--- R/arc-raster.R | 13 R/arc-read.R | 230 ++++++++++---- R/arc-select.R | 485 +++++++++++++++++++++--------- R/attachments.R |only R/import-standalone-obj-type.R |only R/import-standalone-types-check.R |only R/sf-methods.R | 30 + R/utils.R | 88 ++--- man/arc_read.Rd | 51 ++- man/arc_select.Rd | 30 - man/attachments.Rd |only man/figures/README-unnamed-chunk-16-1.png |only man/figures/README-unnamed-chunk-8-1.png |binary man/update_params.Rd | 12 man/utils.Rd | 39 +- tests/testthat/test-arc_read.R | 45 ++ tests/testthat/test-date-parsing.R | 2 tests/testthat/test-pbf.R |only tests/testthat/test-returned-fields.R |only 24 files changed, 799 insertions(+), 386 deletions(-)
Title: Adaptive Smoothing of Digital Images
Description: Implements tools for manipulation of digital
images and the Propagation Separation approach
by Polzehl and Spokoiny (2006) <DOI:10.1007/s00440-005-0464-1>
for smoothing digital images, see Polzehl and Tabelow (2007)
<DOI:10.18637/jss.v019.i01>.
Author: Karsten Tabelow <tabelow@wias-berlin.de>,
Joerg Polzehl <polzehl@wias-berlin.de>
Maintainer: Karsten Tabelow <tabelow@wias-berlin.de>
Diff between adimpro versions 0.9.6 dated 2023-09-06 and 0.9.7 dated 2024-07-05
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- src/awsimage.f | 5 +++-- src/shrink.f | 10 ++++++---- 4 files changed, 17 insertions(+), 14 deletions(-)
Title: R6-Based ML Learners for 'mlexperiments'
Description: Enhances 'mlexperiments'
<https://CRAN.R-project.org/package=mlexperiments> with additional
machine learning ('ML') learners. The package provides R6-based
learners for the following algorithms: 'glmnet'
<https://CRAN.R-project.org/package=glmnet>, 'ranger'
<https://CRAN.R-project.org/package=ranger>, 'xgboost'
<https://CRAN.R-project.org/package=xgboost>, and 'lightgbm'
<https://CRAN.R-project.org/package=lightgbm>. These can be used
directly with the 'mlexperiments' R package.
Author: Lorenz A. Kapsner [cre, aut, cph]
Maintainer: Lorenz A. Kapsner <lorenz.kapsner@gmail.com>
Diff between mllrnrs versions 0.0.3 dated 2024-03-07 and 0.0.4 dated 2024-07-05
mllrnrs-0.0.3/mllrnrs/inst/doc/mllrnrs_glmnet_binary.Rmd |only mllrnrs-0.0.3/mllrnrs/inst/doc/mllrnrs_glmnet_multiclass.Rmd |only mllrnrs-0.0.3/mllrnrs/inst/doc/mllrnrs_glmnet_regression.Rmd |only mllrnrs-0.0.3/mllrnrs/inst/doc/mllrnrs_lightgbm_binary.Rmd |only mllrnrs-0.0.3/mllrnrs/inst/doc/mllrnrs_lightgbm_multiclass.Rmd |only mllrnrs-0.0.3/mllrnrs/inst/doc/mllrnrs_lightgbm_regression.Rmd |only mllrnrs-0.0.3/mllrnrs/inst/doc/mllrnrs_ranger_binary.Rmd |only mllrnrs-0.0.3/mllrnrs/inst/doc/mllrnrs_ranger_multiclass.Rmd |only mllrnrs-0.0.3/mllrnrs/inst/doc/mllrnrs_ranger_regression.Rmd |only mllrnrs-0.0.3/mllrnrs/inst/doc/mllrnrs_xgboost_binary.Rmd |only mllrnrs-0.0.3/mllrnrs/inst/doc/mllrnrs_xgboost_multiclass.Rmd |only mllrnrs-0.0.3/mllrnrs/inst/doc/mllrnrs_xgboost_regression.Rmd |only mllrnrs-0.0.3/mllrnrs/vignettes/mllrnrs_glmnet_binary.Rmd |only mllrnrs-0.0.3/mllrnrs/vignettes/mllrnrs_glmnet_multiclass.Rmd |only mllrnrs-0.0.3/mllrnrs/vignettes/mllrnrs_glmnet_regression.Rmd |only mllrnrs-0.0.3/mllrnrs/vignettes/mllrnrs_lightgbm_binary.Rmd |only mllrnrs-0.0.3/mllrnrs/vignettes/mllrnrs_lightgbm_multiclass.Rmd |only mllrnrs-0.0.3/mllrnrs/vignettes/mllrnrs_lightgbm_regression.Rmd |only mllrnrs-0.0.3/mllrnrs/vignettes/mllrnrs_ranger_binary.Rmd |only mllrnrs-0.0.3/mllrnrs/vignettes/mllrnrs_ranger_multiclass.Rmd |only mllrnrs-0.0.3/mllrnrs/vignettes/mllrnrs_ranger_regression.Rmd |only mllrnrs-0.0.3/mllrnrs/vignettes/mllrnrs_xgboost_binary.Rmd |only mllrnrs-0.0.3/mllrnrs/vignettes/mllrnrs_xgboost_multiclass.Rmd |only mllrnrs-0.0.3/mllrnrs/vignettes/mllrnrs_xgboost_regression.Rmd |only mllrnrs-0.0.4/mllrnrs/DESCRIPTION | 18 mllrnrs-0.0.4/mllrnrs/MD5 | 120 mllrnrs-0.0.4/mllrnrs/R/learner_glmnet.R | 637 +-- mllrnrs-0.0.4/mllrnrs/R/learner_lightgbm.R | 108 mllrnrs-0.0.4/mllrnrs/R/learner_ranger.R | 725 +-- mllrnrs-0.0.4/mllrnrs/R/learner_xgboost.R | 658 +-- mllrnrs-0.0.4/mllrnrs/build/vignette.rds |binary mllrnrs-0.0.4/mllrnrs/inst/doc/mllrnrs_glmnet_binary.R | 738 +-- mllrnrs-0.0.4/mllrnrs/inst/doc/mllrnrs_glmnet_binary.html | 1063 ++--- mllrnrs-0.0.4/mllrnrs/inst/doc/mllrnrs_glmnet_binary.qmd |only mllrnrs-0.0.4/mllrnrs/inst/doc/mllrnrs_glmnet_multiclass.R | 821 ++-- mllrnrs-0.0.4/mllrnrs/inst/doc/mllrnrs_glmnet_multiclass.html | 1146 ++--- mllrnrs-0.0.4/mllrnrs/inst/doc/mllrnrs_glmnet_multiclass.qmd |only mllrnrs-0.0.4/mllrnrs/inst/doc/mllrnrs_glmnet_regression.R | 728 +-- mllrnrs-0.0.4/mllrnrs/inst/doc/mllrnrs_glmnet_regression.html | 1053 +---- mllrnrs-0.0.4/mllrnrs/inst/doc/mllrnrs_glmnet_regression.qmd |only mllrnrs-0.0.4/mllrnrs/inst/doc/mllrnrs_lightgbm_binary.R | 1342 +++--- mllrnrs-0.0.4/mllrnrs/inst/doc/mllrnrs_lightgbm_binary.html | 1661 +++----- mllrnrs-0.0.4/mllrnrs/inst/doc/mllrnrs_lightgbm_binary.qmd |only mllrnrs-0.0.4/mllrnrs/inst/doc/mllrnrs_lightgbm_multiclass.R | 1680 ++++---- mllrnrs-0.0.4/mllrnrs/inst/doc/mllrnrs_lightgbm_multiclass.html | 1999 ++++------ mllrnrs-0.0.4/mllrnrs/inst/doc/mllrnrs_lightgbm_multiclass.qmd |only mllrnrs-0.0.4/mllrnrs/inst/doc/mllrnrs_lightgbm_regression.R | 1048 ++--- mllrnrs-0.0.4/mllrnrs/inst/doc/mllrnrs_lightgbm_regression.html | 1373 ++---- mllrnrs-0.0.4/mllrnrs/inst/doc/mllrnrs_lightgbm_regression.qmd |only mllrnrs-0.0.4/mllrnrs/inst/doc/mllrnrs_ranger_binary.R | 858 ++-- mllrnrs-0.0.4/mllrnrs/inst/doc/mllrnrs_ranger_binary.html | 1183 ++--- mllrnrs-0.0.4/mllrnrs/inst/doc/mllrnrs_ranger_binary.qmd |only mllrnrs-0.0.4/mllrnrs/inst/doc/mllrnrs_ranger_multiclass.R | 959 ++-- mllrnrs-0.0.4/mllrnrs/inst/doc/mllrnrs_ranger_multiclass.html | 1284 ++---- mllrnrs-0.0.4/mllrnrs/inst/doc/mllrnrs_ranger_multiclass.qmd |only mllrnrs-0.0.4/mllrnrs/inst/doc/mllrnrs_ranger_regression.R | 860 ++-- mllrnrs-0.0.4/mllrnrs/inst/doc/mllrnrs_ranger_regression.html | 1185 ++--- mllrnrs-0.0.4/mllrnrs/inst/doc/mllrnrs_ranger_regression.qmd |only mllrnrs-0.0.4/mllrnrs/inst/doc/mllrnrs_xgboost_binary.R | 742 +-- mllrnrs-0.0.4/mllrnrs/inst/doc/mllrnrs_xgboost_binary.html | 1067 ++--- mllrnrs-0.0.4/mllrnrs/inst/doc/mllrnrs_xgboost_binary.qmd |only mllrnrs-0.0.4/mllrnrs/inst/doc/mllrnrs_xgboost_multiclass.R | 888 ++-- mllrnrs-0.0.4/mllrnrs/inst/doc/mllrnrs_xgboost_multiclass.html | 1213 ++---- mllrnrs-0.0.4/mllrnrs/inst/doc/mllrnrs_xgboost_multiclass.qmd |only mllrnrs-0.0.4/mllrnrs/inst/doc/mllrnrs_xgboost_regression.R | 744 +-- mllrnrs-0.0.4/mllrnrs/inst/doc/mllrnrs_xgboost_regression.html | 1069 ++--- mllrnrs-0.0.4/mllrnrs/inst/doc/mllrnrs_xgboost_regression.qmd |only mllrnrs-0.0.4/mllrnrs/tests/testthat/test-glmnet_multiclass.R | 208 - mllrnrs-0.0.4/mllrnrs/tests/testthat/test-lightgbm_binary.R | 229 - mllrnrs-0.0.4/mllrnrs/tests/testthat/test-lightgbm_multiclass.R | 4 mllrnrs-0.0.4/mllrnrs/tests/testthat/test-ranger_binary.R | 215 - mllrnrs-0.0.4/mllrnrs/tests/testthat/test-ranger_multiclass.R | 214 - mllrnrs-0.0.4/mllrnrs/tests/testthat/test-xgboost_multiclass.R | 228 - mllrnrs-0.0.4/mllrnrs/vignettes/mllrnrs_glmnet_binary.qmd |only mllrnrs-0.0.4/mllrnrs/vignettes/mllrnrs_glmnet_multiclass.qmd |only mllrnrs-0.0.4/mllrnrs/vignettes/mllrnrs_glmnet_regression.qmd |only mllrnrs-0.0.4/mllrnrs/vignettes/mllrnrs_lightgbm_binary.qmd |only mllrnrs-0.0.4/mllrnrs/vignettes/mllrnrs_lightgbm_multiclass.qmd |only mllrnrs-0.0.4/mllrnrs/vignettes/mllrnrs_lightgbm_regression.qmd |only mllrnrs-0.0.4/mllrnrs/vignettes/mllrnrs_ranger_binary.qmd |only mllrnrs-0.0.4/mllrnrs/vignettes/mllrnrs_ranger_multiclass.qmd |only mllrnrs-0.0.4/mllrnrs/vignettes/mllrnrs_ranger_regression.qmd |only mllrnrs-0.0.4/mllrnrs/vignettes/mllrnrs_xgboost_binary.qmd |only mllrnrs-0.0.4/mllrnrs/vignettes/mllrnrs_xgboost_multiclass.qmd |only mllrnrs-0.0.4/mllrnrs/vignettes/mllrnrs_xgboost_regression.qmd |only 85 files changed, 13981 insertions(+), 16087 deletions(-)
Title: Multivariate Generalised Gaussian Distribution; Kullback-Leibler
Divergence
Description: Distance between multivariate generalised Gaussian distributions, as presented by N. Bouhlel and A. Dziri (2019) <doi:10.1109/LSP.2019.2915000>. Manipulation of multivariate generalised Gaussian distributions (methods presented by Gomez, Gomez-Villegas and Marin (1998) <doi:10.1080/03610929808832115> and Pascal, Bombrun, Tourneret and Berthoumieu (2013) <doi:10.1109/TSP.2013.2282909>).
Author: Pierre Santagostini [aut, cre],
Nizar Bouhlel [aut]
Maintainer: Pierre Santagostini <pierre.santagostini@agrocampus-ouest.fr>
Diff between mggd versions 1.2.3 dated 2024-03-19 and 1.3.1 dated 2024-07-05
DESCRIPTION | 10 +-- MD5 | 12 ++-- NAMESPACE | 1 R/lauricella.R | 155 ++++++++++++++++++++++++++++++++++++------------------ R/plotmggd.R | 8 +- build/partial.rdb |binary man/plotmggd.Rd | 8 +- 7 files changed, 124 insertions(+), 70 deletions(-)
Title: Process ArcGIS Protocol Buffer FeatureCollections
Description: Fast processing of ArcGIS FeatureCollection protocol buffers in R.
It is designed to work seamlessly with 'httr2' and integrates with 'sf'.
Author: Josiah Parry [aut, cre]
Maintainer: Josiah Parry <josiah.parry@gmail.com>
Diff between arcpbf versions 0.1.0 dated 2023-11-09 and 0.1.2 dated 2024-07-05
DESCRIPTION | 10 +- MD5 | 35 ++++---- NAMESPACE | 2 NEWS.md | 10 ++ R/post-process.R | 56 +++++++++----- R/resp-body-pbf.R | 10 +- inst/ids.pbf | 133 ---------------------------------- man/httr2.Rd | 12 +-- src/rust/Cargo.lock | 12 +-- src/rust/arcpbf/Cargo.toml | 8 +- src/rust/arcpbf/src/geometry/point.rs | 21 ++++- src/rust/arcpbf/src/geometry/poly.rs | 8 ++ src/rust/arcpbf/src/parse.rs | 41 +++++++--- src/rust/arcpbf/src/process.rs | 53 ++++++------- src/rust/arcpbf/src/table.rs | 2 src/rust/vendor-config.toml | 1 src/rust/vendor.tar.xz |binary tests |only 18 files changed, 179 insertions(+), 235 deletions(-)
Title: Rapid Parallel and Distributed Computing
Description: Parallel computing with a network of local and remote
workers. Fast exchange of results between the workers through a
'Redis' database. Key features include task queues, local caching, and
sophisticated error handling.
Author: Marc Becker [cre, aut, cph]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between rush versions 0.1.0 dated 2024-06-20 and 0.1.1 dated 2024-07-05
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NAMESPACE | 2 ++ NEWS.md | 5 +++++ R/Rush.R | 1 + R/zzz.R | 1 + 6 files changed, 18 insertions(+), 9 deletions(-)
Title: Concise Spatial Query and Representation System (c-Squares)
Description: Encode and decode c-squares, from and to simple feature (sf)
or spatiotemporal arrays (stars) objects. Use c-squares codes to quickly
join or query spatial data.
Author: Pepijn de Vries [aut, cre]
Maintainer: Pepijn de Vries <pepijn.devries@outlook.com>
Diff between csquares versions 0.0.3 dated 2024-06-24 and 0.0.5 dated 2024-07-05
csquares-0.0.3/csquares/R/csquares-package.r |only csquares-0.0.5/csquares/DESCRIPTION | 23 +++-- csquares-0.0.5/csquares/MD5 | 55 ++++++++----- csquares-0.0.5/csquares/NAMESPACE | 9 +- csquares-0.0.5/csquares/NEWS.md | 12 ++ csquares-0.0.5/csquares/R/as_csquares.R | 20 +++- csquares-0.0.5/csquares/R/as_stars.R | 9 +- csquares-0.0.5/csquares/R/csquares-package.R |only csquares-0.0.5/csquares/R/csquares_methods.R | 76 ++++++++++++++---- csquares-0.0.5/csquares/R/drop.R |only csquares-0.0.5/csquares/R/expand.R |only csquares-0.0.5/csquares/R/helpers.R | 101 +++++++++++++++++------- csquares-0.0.5/csquares/R/in.R |only csquares-0.0.5/csquares/R/new_csquares.R | 3 csquares-0.0.5/csquares/R/st_as_sf.R | 71 ++++++++++++---- csquares-0.0.5/csquares/R/summarise.R | 7 + csquares-0.0.5/csquares/R/tidyverse.R | 68 ++++++++++++++-- csquares-0.0.5/csquares/R/validate.R | 8 + csquares-0.0.5/csquares/README.md | 6 + csquares-0.0.5/csquares/build/vignette.rds |only csquares-0.0.5/csquares/inst |only csquares-0.0.5/csquares/man/as_csquares.Rd | 8 + csquares-0.0.5/csquares/man/csquare-methods.Rd | 59 +++++++------- csquares-0.0.5/csquares/man/csquares-package.Rd | 11 ++ csquares-0.0.5/csquares/man/drop_csquares.Rd |only csquares-0.0.5/csquares/man/expand_wildcards.Rd |only csquares-0.0.5/csquares/man/in_csquares.Rd |only csquares-0.0.5/csquares/man/st_as_sf.Rd | 14 ++- csquares-0.0.5/csquares/tests |only csquares-0.0.5/csquares/vignettes |only 30 files changed, 411 insertions(+), 149 deletions(-)
Title: Contrast Analyses for Factorial Designs
Description: Contrast analysis for factorial designs provides an
alternative to the traditional ANOVA approach, offering the distinct
advantage of testing targeted hypotheses. The foundation of this
package is primarily rooted in the works of Rosenthal, Rosnow, and
Rubin (2000, ISBN: 978-0521659802) as well as Sedlmeier and Renkewitz
(2018, ISBN: 978-3868943214).
Author: Johannes Titz [aut, cre],
Markus Burkhardt [aut],
Mirka Henninger [ctb],
Simone Malejka [ctb]
Maintainer: Johannes Titz <johannes.titz@gmail.com>
Diff between cofad versions 0.1.1 dated 2020-03-02 and 0.3.0 dated 2024-07-05
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Title: A Collection of Functions for Directional Data Analysis
Description: A collection of functions for directional data (including massive data, with millions of observations) analysis. Hypothesis testing, discriminant and regression analysis, MLE of distributions and more are included. The standard textbook for such data is the "Directional Statistics" by Mardia, K. V. and Jupp, P. E. (2000). Other references include a) Phillip J. Paine, Simon P. Preston Michail Tsagris and Andrew T. A. Wood (2018). "An elliptically symmetric angular Gaussian distribution". Statistics and Computing 28(3): 689-697. <doi:10.1007/s11222-017-9756-4>. b) Tsagris M. and Alenazi A. (2019). "Comparison of discriminant analysis methods on the sphere". Communications in Statistics: Case Studies, Data Analysis and Applications 5(4):467--491. <doi:10.1080/23737484.2019.1684854>. c) P. J. Paine, S. P. Preston, M. Tsagris and Andrew T. A. Wood (2020). "Spherical regression models with general covariates and anisotropic errors". Statistics and Computing 30(1): 153--165. <d [...truncated...]
Author: Michail Tsagris, Giorgos Athineou, Christos Adam, Anamul Sajib, Eli Amson, Micah J. Waldstein
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between Directional versions 6.6 dated 2024-04-11 and 6.7 dated 2024-07-05
DESCRIPTION | 8 +- MD5 | 45 ++++++------ NAMESPACE | 2 R/cipc.mle.R | 78 ++++++++++++++++++--- R/cipc.reg.R | 162 +++++++++++++++++++++++++++++++++++++-------- R/gcpc.mle.R | 3 R/gcpc.reg.R | 14 +-- R/mixvmf.mle.R | 4 - R/sespc.mle.R | 8 +- R/spcauchy.mle.R | 70 +++++++++++-------- R/spcauchy.mle2.R |only man/Directional-package.Rd | 4 - man/colspml.mle.Rd | 16 ++-- man/dvm.Rd | 2 man/esag.mle.Rd | 2 man/etoa.Rd | 4 - man/sespc.mle.Rd | 2 man/spher.vmf.contour.Rd | 6 - man/spml.mle.Rd | 2 man/spml.reg.Rd | 13 +-- man/vm.nb.Rd | 2 man/vmf.contour.Rd | 6 - man/vmf.mle.Rd | 44 ++++++++---- man/vmnb.pred.Rd | 2 24 files changed, 343 insertions(+), 156 deletions(-)
Title: Data Management and Analysis of Tests
Description: A system for the management, assessment, and psychometric analysis of data from educational and psychological tests.
Author: Gunter Maris [aut],
Timo Bechger [aut],
Jesse Koops [aut, cre],
Ivailo Partchev [aut]
Maintainer: Jesse Koops <jesse.koops@cito.nl>
Diff between dexter versions 1.4.2 dated 2024-04-12 and 1.5.0 dated 2024-07-05
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Title: Causal Modeling with Coincidence Analysis
Description: Provides comprehensive functionalities for causal modeling with Coincidence Analysis (CNA), which is a configurational comparative method of causal data analysis that was first introduced in Baumgartner (2009) <doi:10.1177/0049124109339369>, and generalized in Baumgartner & Ambuehl (2018) <doi:10.1017/psrm.2018.45>. CNA is designed to recover INUS-causation from data, which is particularly relevant for analyzing processes featuring conjunctural causation (component causation) and equifinality (alternative causation). CNA is currently the only method for INUS-discovery that allows for multiple effects (outcomes/endogenous factors), meaning it can analyze common-cause and causal chain structures.
Author: Mathias Ambuehl [aut, cre, cph],
Michael Baumgartner [aut, cph],
Ruedi Epple [ctb],
Veli-Pekka Parkkinen [ctb],
Alrik Thiem [ctb]
Maintainer: Mathias Ambuehl <mathias.ambuehl@consultag.ch>
Diff between cna versions 3.6.1 dated 2024-06-28 and 3.6.2 dated 2024-07-05
DESCRIPTION | 8 ++-- MD5 | 16 ++++---- inst/NEWS | 10 +++-- inst/doc/cna.R | 102 +++++++++++++++++++++++++++++++---------------------- inst/doc/cna.Rnw | 99 +++++++++++++++++++++++++++++++-------------------- inst/doc/cna.pdf |binary man/cna-package.Rd | 4 +- man/cna.Rd | 47 ++++++++++++++++++------ vignettes/cna.Rnw | 99 +++++++++++++++++++++++++++++++-------------------- 9 files changed, 239 insertions(+), 146 deletions(-)
Title: Migration Traffic Rate Calculation Package for 'Birdscan MR1'
Radars
Description: Extract data from 'Birdscan MR1' 'SQL' vertical-looking radar databases, filter, and process them to Migration Traffic Rates (#objects per hour and km) or density (#objects per km3) of, for example birds, and insects. Object classifications in the 'Birdscan MR1' databases are based on the dataset of Haest et al. (2021) <doi:10.5281/zenodo.5734960>). Migration Traffic Rates and densities can be calculated separately for different height bins (with a height resolution of choice) as well as over time periods of choice (e.g., 1/2 hour, 1 hour, 1 day, day/night, the full time period of observation, and anything in between). Two plotting functions are also included to explore the data in the 'SQL' databases and the resulting Migration Traffic Rate results. For details on the Migration Traffic Rate calculation procedures, see Schmid et al. (2019) <doi:10.1111/ecog.04025>.
Author: Birgen Haest [aut, cre] ,
Fabian Hertner [aut],
Baptiste Schmid [ctb],
Damiano Preatoni [ctb],
Johannes De Groeve [ctb],
Felix Liechti [ctb]
Maintainer: Birgen Haest <birgen.haest@vogelwarte.ch>
Diff between birdscanR versions 0.2.0 dated 2023-10-06 and 0.3.0 dated 2024-07-05
DESCRIPTION | 14 - MD5 | 26 + NAMESPACE | 4 NEWS.md | 21 + R/computeDensity.R |only R/computeMTR.R | 2 R/extractDbData.R | 23 + R/getBatClassification.R |only R/getCollectionTable.R | 4 R/plotExploration.R | 472 ++++++++++++++++++----------------- R/reclassToBats.R |only build/vignette.rds |binary inst/doc/mtrCalculationWorkflow.html | 2 man/computeDensity.Rd |only man/extractDbData.Rd | 3 man/getBatClassification.Rd |only man/reclassToBats.Rd |only 17 files changed, 314 insertions(+), 257 deletions(-)
Title: Violin Plot
Description: A violin plot is a combination of a box plot and a kernel density plot. This package allows extensive customisation of violin plots.
Author: Daniel Adler [aut, cph],
S. Thomas Kelly [aut, cre],
Tom M. Elliott [aut, ctb],
Jordan Adamson [aut, ctb]
Maintainer: S. Thomas Kelly <tomkellygenetics@gmail.com>
Diff between vioplot versions 0.4.0 dated 2022-12-09 and 0.5.0 dated 2024-07-05
vioplot-0.4.0/vioplot/vignettes/backup |only vioplot-0.5.0/vioplot/DESCRIPTION | 10 vioplot-0.5.0/vioplot/LICENSE | 6 vioplot-0.5.0/vioplot/MD5 | 129 - vioplot-0.5.0/vioplot/NAMESPACE | 81 vioplot-0.5.0/vioplot/NEWS.md | 210 - vioplot-0.5.0/vioplot/R/annotation.R |only vioplot-0.5.0/vioplot/R/histoplot.R | 1176 ++++----- vioplot-0.5.0/vioplot/R/vioplot.R | 1223 +++++----- vioplot-0.5.0/vioplot/R/vioplot.stats.R | 36 vioplot-0.5.0/vioplot/build/vignette.rds |binary vioplot-0.5.0/vioplot/inst/CITATION | 30 vioplot-0.5.0/vioplot/inst/COPYRIGHT | 62 vioplot-0.5.0/vioplot/inst/doc/histogram_customisation.R | 175 - vioplot-0.5.0/vioplot/inst/doc/histogram_customisation.Rmd | 348 +- vioplot-0.5.0/vioplot/inst/doc/histogram_customisation.html | 1011 ++++---- vioplot-0.5.0/vioplot/inst/doc/histogram_formulae.R | 120 vioplot-0.5.0/vioplot/inst/doc/histogram_formulae.Rmd | 262 +- vioplot-0.5.0/vioplot/inst/doc/histogram_formulae.html | 895 +++---- vioplot-0.5.0/vioplot/inst/doc/overlaying_annotations.R | 94 vioplot-0.5.0/vioplot/inst/doc/overlaying_annotations.Rmd | 174 - vioplot-0.5.0/vioplot/inst/doc/overlaying_annotations.html | 868 +++---- vioplot-0.5.0/vioplot/inst/doc/violin_area.R | 146 - vioplot-0.5.0/vioplot/inst/doc/violin_area.Rmd | 286 +- vioplot-0.5.0/vioplot/inst/doc/violin_area.html | 896 +++---- vioplot-0.5.0/vioplot/inst/doc/violin_customisation.R | 161 - vioplot-0.5.0/vioplot/inst/doc/violin_customisation.Rmd | 306 +- vioplot-0.5.0/vioplot/inst/doc/violin_customisation.html | 985 ++++---- vioplot-0.5.0/vioplot/inst/doc/violin_formulae.R | 176 + vioplot-0.5.0/vioplot/inst/doc/violin_formulae.Rmd | 318 +- vioplot-0.5.0/vioplot/inst/doc/violin_formulae.html | 1020 ++++---- vioplot-0.5.0/vioplot/inst/doc/violin_split.R | 203 + vioplot-0.5.0/vioplot/inst/doc/violin_split.Rmd | 398 +-- vioplot-0.5.0/vioplot/inst/doc/violin_split.html | 1084 +++++--- vioplot-0.5.0/vioplot/inst/doc/violin_ylog.R | 54 vioplot-0.5.0/vioplot/inst/doc/violin_ylog.Rmd | 150 - vioplot-0.5.0/vioplot/inst/doc/violin_ylog.html | 836 +++--- vioplot-0.5.0/vioplot/man/add_labels.Rd |only vioplot-0.5.0/vioplot/man/add_outliers.Rd |only vioplot-0.5.0/vioplot/man/histoplot.Rd | 688 ++--- vioplot-0.5.0/vioplot/man/violin.stats.Rd | 50 vioplot-0.5.0/vioplot/man/vioplot.Rd | 669 ++--- vioplot-0.5.0/vioplot/tests/testthat.R | 8 vioplot-0.5.0/vioplot/tests/testthat/Rplots.pdf |only vioplot-0.5.0/vioplot/tests/testthat/test_histoplot_customisation.R | 70 vioplot-0.5.0/vioplot/tests/testthat/test_histoplot_formula.R | 54 vioplot-0.5.0/vioplot/tests/testthat/test_violin_area.R | 46 vioplot-0.5.0/vioplot/tests/testthat/test_violin_classes.R | 52 vioplot-0.5.0/vioplot/tests/testthat/test_violin_customisation.R | 70 vioplot-0.5.0/vioplot/tests/testthat/test_violin_formula.R | 54 vioplot-0.5.0/vioplot/tests/testthat/test_violin_median.R | 48 vioplot-0.5.0/vioplot/tests/testthat/test_violin_na_handle.R | 54 vioplot-0.5.0/vioplot/tests/testthat/test_violin_names.R | 30 vioplot-0.5.0/vioplot/tests/testthat/test_violin_side.R | 20 vioplot-0.5.0/vioplot/tests/testthat/test_violin_unequal_groups.R | 44 vioplot-0.5.0/vioplot/tests/testthat/test_ylog.R | 236 - vioplot-0.5.0/vioplot/vignettes/histogram_customisation.Rmd | 348 +- vioplot-0.5.0/vioplot/vignettes/histogram_formulae.Rmd | 262 +- vioplot-0.5.0/vioplot/vignettes/overlaying_annotations.Rmd | 174 - vioplot-0.5.0/vioplot/vignettes/violin_area.Rmd | 286 +- vioplot-0.5.0/vioplot/vignettes/violin_customisation.Rmd | 306 +- vioplot-0.5.0/vioplot/vignettes/violin_formulae.Rmd | 318 +- vioplot-0.5.0/vioplot/vignettes/violin_split.Rmd | 398 +-- vioplot-0.5.0/vioplot/vignettes/violin_ylog.Rmd | 150 - 64 files changed, 10146 insertions(+), 8218 deletions(-)
Title: Discrete-Event Simulation for R
Description: A process-oriented and trajectory-based Discrete-Event Simulation
(DES) package for R. It is designed as a generic yet powerful framework. The
architecture encloses a robust and fast simulation core written in 'C++' with
automatic monitoring capabilities. It provides a rich and flexible R API that
revolves around the concept of trajectory, a common path in the simulation
model for entities of the same type. Documentation about 'simmer' is provided
by several vignettes included in this package, via the paper by Ucar, Smeets
& Azcorra (2019, <doi:10.18637/jss.v090.i02>), and the paper by Ucar,
Hernández, Serrano & Azcorra (2018, <doi:10.1109/MCOM.2018.1700960>);
see 'citation("simmer")' for details.
Author: Inaki Ucar [aut, cph, cre] ,
Bart Smeets [aut, cph]
Maintainer: Inaki Ucar <iucar@fedoraproject.org>
Diff between simmer versions 4.4.6.3 dated 2023-11-28 and 4.4.6.4 dated 2024-07-05
DESCRIPTION | 6 MD5 | 32 NEWS.md | 3 build/partial.rdb |binary build/vignette.rds |binary inst/doc/simmer-01-introduction.html | 164 ++-- inst/doc/simmer-02-jss.Rmd | 1 inst/doc/simmer-02-jss.pdf |binary inst/doc/simmer-03-trajectories.html | 88 +- inst/doc/simmer-04-bank-1.html | 1022 ++++++++++++++-------------- inst/doc/simmer-04-bank-2.html | 1238 +++++++++++++++++------------------ inst/doc/simmer-05-simpy.html | 8 inst/doc/simmer-06-queueing.html | 32 inst/doc/simmer-07-ctmc.html | 18 inst/doc/simmer-08-philosophers.html | 14 inst/doc/simmer-aa-5G.html | 20 vignettes/simmer-02-jss.Rmd | 1 17 files changed, 1325 insertions(+), 1322 deletions(-)
Title: Machine Learning Experiments
Description: Provides 'R6' objects to perform parallelized hyperparameter
optimization and cross-validation. Hyperparameter optimization can be
performed with Bayesian optimization (via 'ParBayesianOptimization'
<https://cran.r-project.org/package=ParBayesianOptimization>) and grid
search. The optimized hyperparameters can be validated using k-fold
cross-validation. Alternatively, hyperparameter optimization and
validation can be performed with nested cross-validation. While
'mlexperiments' focuses on core wrappers for machine learning
experiments, additional learner algorithms can be supplemented by
inheriting from the provided learner base class.
Author: Lorenz A. Kapsner [cre, aut, cph]
Maintainer: Lorenz A. Kapsner <lorenz.kapsner@gmail.com>
Diff between mlexperiments versions 0.0.3 dated 2024-03-07 and 0.0.4 dated 2024-07-05
mlexperiments-0.0.3/mlexperiments/R/ml_class_base.R |only mlexperiments-0.0.3/mlexperiments/inst/doc/mlexperiments_knn_binary.Rmd |only mlexperiments-0.0.3/mlexperiments/inst/doc/mlexperiments_knn_multiclass.Rmd |only mlexperiments-0.0.3/mlexperiments/inst/doc/mlexperiments_rpart_binary.Rmd |only mlexperiments-0.0.3/mlexperiments/inst/doc/mlexperiments_rpart_multiclass.Rmd |only mlexperiments-0.0.3/mlexperiments/inst/doc/mlexperiments_rpart_regression.Rmd |only mlexperiments-0.0.3/mlexperiments/inst/doc/mlexperiments_starter.Rmd |only mlexperiments-0.0.3/mlexperiments/vignettes/mlexperiments_knn_binary.Rmd |only mlexperiments-0.0.3/mlexperiments/vignettes/mlexperiments_knn_multiclass.Rmd |only mlexperiments-0.0.3/mlexperiments/vignettes/mlexperiments_rpart_binary.Rmd |only mlexperiments-0.0.3/mlexperiments/vignettes/mlexperiments_rpart_multiclass.Rmd |only mlexperiments-0.0.3/mlexperiments/vignettes/mlexperiments_rpart_regression.Rmd |only mlexperiments-0.0.3/mlexperiments/vignettes/mlexperiments_starter.Rmd |only mlexperiments-0.0.4/mlexperiments/DESCRIPTION | 16 mlexperiments-0.0.4/mlexperiments/MD5 | 84 mlexperiments-0.0.4/mlexperiments/R/MLCrossValidation.R | 573 ++-- mlexperiments-0.0.4/mlexperiments/R/MLExperimentsBase.R |only mlexperiments-0.0.4/mlexperiments/R/MLLearnerBase.R | 525 +-- mlexperiments-0.0.4/mlexperiments/R/MLNestedCV.R | 622 ++-- mlexperiments-0.0.4/mlexperiments/R/cv_helper_base.R | 355 +- mlexperiments-0.0.4/mlexperiments/R/cv_helper_nested.R | 14 mlexperiments-0.0.4/mlexperiments/R/learner_rpart.R | 21 mlexperiments-0.0.4/mlexperiments/R/ml_helper_base.R | 202 - mlexperiments-0.0.4/mlexperiments/R/optimizer_helper_bayesian.R | 301 +- mlexperiments-0.0.4/mlexperiments/R/optimizer_helper_grid.R | 161 - mlexperiments-0.0.4/mlexperiments/R/tune_helper_base.R | 344 +- mlexperiments-0.0.4/mlexperiments/build/vignette.rds |binary mlexperiments-0.0.4/mlexperiments/inst/doc/mlexperiments_knn_binary.R | 536 +-- mlexperiments-0.0.4/mlexperiments/inst/doc/mlexperiments_knn_binary.html | 887 ++---- mlexperiments-0.0.4/mlexperiments/inst/doc/mlexperiments_knn_binary.qmd |only mlexperiments-0.0.4/mlexperiments/inst/doc/mlexperiments_knn_multiclass.R | 618 ++-- mlexperiments-0.0.4/mlexperiments/inst/doc/mlexperiments_knn_multiclass.html | 969 ++---- mlexperiments-0.0.4/mlexperiments/inst/doc/mlexperiments_knn_multiclass.qmd |only mlexperiments-0.0.4/mlexperiments/inst/doc/mlexperiments_rpart_binary.R | 933 +++--- mlexperiments-0.0.4/mlexperiments/inst/doc/mlexperiments_rpart_binary.html | 1252 +++----- mlexperiments-0.0.4/mlexperiments/inst/doc/mlexperiments_rpart_binary.qmd |only mlexperiments-0.0.4/mlexperiments/inst/doc/mlexperiments_rpart_multiclass.R | 907 +++--- mlexperiments-0.0.4/mlexperiments/inst/doc/mlexperiments_rpart_multiclass.html | 1224 +++----- mlexperiments-0.0.4/mlexperiments/inst/doc/mlexperiments_rpart_multiclass.qmd |only mlexperiments-0.0.4/mlexperiments/inst/doc/mlexperiments_rpart_regression.R | 955 +++--- mlexperiments-0.0.4/mlexperiments/inst/doc/mlexperiments_rpart_regression.html | 1270 +++------ mlexperiments-0.0.4/mlexperiments/inst/doc/mlexperiments_rpart_regression.qmd |only mlexperiments-0.0.4/mlexperiments/inst/doc/mlexperiments_starter.R | 800 ++--- mlexperiments-0.0.4/mlexperiments/inst/doc/mlexperiments_starter.html | 1403 +++------- mlexperiments-0.0.4/mlexperiments/inst/doc/mlexperiments_starter.qmd |only mlexperiments-0.0.4/mlexperiments/man/LearnerRpart.Rd | 1 mlexperiments-0.0.4/mlexperiments/man/MLBase.Rd | 2 mlexperiments-0.0.4/mlexperiments/man/MLExperimentsBase.Rd | 2 mlexperiments-0.0.4/mlexperiments/man/MLLearnerBase.Rd | 2 mlexperiments-0.0.4/mlexperiments/tests/testthat/test-rpart_classification.R | 498 +-- mlexperiments-0.0.4/mlexperiments/vignettes/mlexperiments_knn_binary.qmd |only mlexperiments-0.0.4/mlexperiments/vignettes/mlexperiments_knn_multiclass.qmd |only mlexperiments-0.0.4/mlexperiments/vignettes/mlexperiments_rpart_binary.qmd |only mlexperiments-0.0.4/mlexperiments/vignettes/mlexperiments_rpart_multiclass.qmd |only mlexperiments-0.0.4/mlexperiments/vignettes/mlexperiments_rpart_regression.qmd |only mlexperiments-0.0.4/mlexperiments/vignettes/mlexperiments_starter.qmd |only 56 files changed, 7060 insertions(+), 8417 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-01-19 1.0.2
2023-05-19 1.0.1