Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data management
system with support for the Structured Query Language (SQL). This
package includes all of DuckDB and a R Database Interface (DBI)
connector.
Author: Hannes Muehleisen [aut] ,
Mark Raasveldt [aut] ,
Kirill Mueller [cre] ,
Stichting DuckDB Foundation [cph],
Apache Software Foundation [cph],
PostgreSQL Global Development Group [cph],
The Regents of the University of California [cph],
Cameron Desrocher [...truncated...]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between duckdb versions 1.0.0 dated 2024-06-13 and 1.0.0-1 dated 2024-07-09
duckdb-1.0.0-1/duckdb/DESCRIPTION | 8 duckdb-1.0.0-1/duckdb/MD5 | 82 +- duckdb-1.0.0-1/duckdb/NEWS.md | 9 duckdb-1.0.0-1/duckdb/R/Connection.R | 4 duckdb-1.0.0-1/duckdb/R/Driver.R | 2 duckdb-1.0.0-1/duckdb/R/Result.R | 2 duckdb-1.0.0-1/duckdb/R/dbConnect__duckdb_driver.R | 3 duckdb-1.0.0-1/duckdb/R/dbExistsTable__duckdb_connection_ANY.R |only duckdb-1.0.0-1/duckdb/R/dbGetInfo__duckdb_connection.R | 1 duckdb-1.0.0-1/duckdb/R/dbGetInfo__duckdb_driver.R | 1 duckdb-1.0.0-1/duckdb/R/dbGetInfo__duckdb_result.R | 1 duckdb-1.0.0-1/duckdb/R/dbWriteTable__duckdb_connection_character_data.frame.R | 1 duckdb-1.0.0-1/duckdb/inst/include/cpp11.hpp | 4 duckdb-1.0.0-1/duckdb/inst/include/cpp11/R.hpp | 23 duckdb-1.0.0-1/duckdb/inst/include/cpp11/altrep.hpp | 4 duckdb-1.0.0-1/duckdb/inst/include/cpp11/as.hpp | 331 +++++----- duckdb-1.0.0-1/duckdb/inst/include/cpp11/attribute_proxy.hpp | 4 duckdb-1.0.0-1/duckdb/inst/include/cpp11/data_frame.hpp | 4 duckdb-1.0.0-1/duckdb/inst/include/cpp11/declarations.hpp | 15 duckdb-1.0.0-1/duckdb/inst/include/cpp11/doubles.hpp | 27 duckdb-1.0.0-1/duckdb/inst/include/cpp11/environment.hpp | 4 duckdb-1.0.0-1/duckdb/inst/include/cpp11/external_pointer.hpp | 4 duckdb-1.0.0-1/duckdb/inst/include/cpp11/function.hpp | 4 duckdb-1.0.0-1/duckdb/inst/include/cpp11/integers.hpp | 29 duckdb-1.0.0-1/duckdb/inst/include/cpp11/list.hpp | 6 duckdb-1.0.0-1/duckdb/inst/include/cpp11/list_of.hpp | 12 duckdb-1.0.0-1/duckdb/inst/include/cpp11/logicals.hpp | 19 duckdb-1.0.0-1/duckdb/inst/include/cpp11/matrix.hpp | 4 duckdb-1.0.0-1/duckdb/inst/include/cpp11/named_arg.hpp | 4 duckdb-1.0.0-1/duckdb/inst/include/cpp11/protect.hpp | 193 +---- duckdb-1.0.0-1/duckdb/inst/include/cpp11/r_bool.hpp | 11 duckdb-1.0.0-1/duckdb/inst/include/cpp11/r_string.hpp | 11 duckdb-1.0.0-1/duckdb/inst/include/cpp11/r_vector.hpp | 30 duckdb-1.0.0-1/duckdb/inst/include/cpp11/raws.hpp | 21 duckdb-1.0.0-1/duckdb/inst/include/cpp11/sexp.hpp | 15 duckdb-1.0.0-1/duckdb/inst/include/cpp11/strings.hpp | 7 duckdb-1.0.0-1/duckdb/man/duckdb.Rd | 5 duckdb-1.0.0-1/duckdb/man/duckdb_connection-class.Rd | 16 duckdb-1.0.0-1/duckdb/man/duckdb_driver-class.Rd | 6 duckdb-1.0.0-1/duckdb/man/duckdb_read_csv.Rd | 2 duckdb-1.0.0-1/duckdb/man/duckdb_result-class.Rd | 6 duckdb-1.0.0-1/duckdb/src/rfuns.cpp | 6 duckdb-1.0.0/duckdb/R/dbExistsTable__duckdb_connection_character.R |only 43 files changed, 454 insertions(+), 487 deletions(-)
Title: Easily Create Presentation-Ready Display Tables
Description: Build display tables from tabular data with an easy-to-use
set of functions. With its progressive approach, we can construct
display tables with a cohesive set of table parts. Table values can be
formatted using any of the included formatting functions. Footnotes
and cell styles can be precisely added through a location targeting
system. The way in which 'gt' handles things for you means that you
don't often have to worry about the fine details.
Author: Richard Iannone [aut, cre] ,
Joe Cheng [aut],
Barret Schloerke [aut] ,
Ellis Hughes [aut] ,
Alexandra Lauer [aut] ,
JooYoung Seo [aut] ,
Ken Brevoort [aut] ,
Olivier Roy [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Richard Iannone <rich@posit.co>
Diff between gt versions 0.10.1 dated 2024-01-17 and 0.11.0 dated 2024-07-09
gt-0.10.1/gt/man/define_units.Rd |only gt-0.10.1/gt/man/print.gt_group.Rd |only gt-0.10.1/gt/man/print.rtf_text.Rd |only gt-0.11.0/gt/DESCRIPTION | 87 gt-0.11.0/gt/LICENSE | 2 gt-0.11.0/gt/MD5 | 609 - gt-0.11.0/gt/NAMESPACE | 62 gt-0.11.0/gt/NEWS.md | 128 gt-0.11.0/gt/R/build_data.R | 2 gt-0.11.0/gt/R/compile_scss.R | 4 gt-0.11.0/gt/R/data_color.R | 176 gt-0.11.0/gt/R/datasets.R | 410 + gt-0.11.0/gt/R/dt_boxhead.R | 7 gt-0.11.0/gt/R/dt_data.R | 25 gt-0.11.0/gt/R/dt_footnotes.R | 18 gt-0.11.0/gt/R/dt_groups_rows.R | 17 gt-0.11.0/gt/R/dt_heading.R | 2 gt-0.11.0/gt/R/dt_options.R | 3 gt-0.11.0/gt/R/dt_row_groups.R | 6 gt-0.11.0/gt/R/dt_spanners.R | 63 gt-0.11.0/gt/R/dt_stub_df.R | 29 gt-0.11.0/gt/R/dt_stubhead.R | 2 gt-0.11.0/gt/R/dt_styles.R | 14 gt-0.11.0/gt/R/dt_summary.R | 123 gt-0.11.0/gt/R/export.R | 559 + gt-0.11.0/gt/R/format_data.R | 4660 ++++++++++---- gt-0.11.0/gt/R/format_vec.R | 967 -- gt-0.11.0/gt/R/gt-package.R | 9 gt-0.11.0/gt/R/gt.R | 38 gt-0.11.0/gt/R/gt_group.R | 135 gt-0.11.0/gt/R/gt_preview.R | 8 gt-0.11.0/gt/R/gt_split.R | 26 gt-0.11.0/gt/R/helpers.R | 1557 +--- gt-0.11.0/gt/R/image.R | 74 gt-0.11.0/gt/R/import-standalone-obj-type.R |only gt-0.11.0/gt/R/import-standalone-types-check.R |only gt-0.11.0/gt/R/info_tables.R | 863 +- gt-0.11.0/gt/R/knitr-utils.R | 8 gt-0.11.0/gt/R/location_methods.R | 52 gt-0.11.0/gt/R/modify_columns.R | 626 + gt-0.11.0/gt/R/modify_rows.R | 15 gt-0.11.0/gt/R/opts.R | 115 gt-0.11.0/gt/R/print.R | 26 gt-0.11.0/gt/R/render_as_html.R | 2 gt-0.11.0/gt/R/render_as_i_html.R | 545 + gt-0.11.0/gt/R/resolver.R | 212 gt-0.11.0/gt/R/rows_add.R | 55 gt-0.11.0/gt/R/shiny.R | 32 gt-0.11.0/gt/R/substitution.R | 225 gt-0.11.0/gt/R/summary_rows.R | 71 gt-0.11.0/gt/R/sysdata.rda |binary gt-0.11.0/gt/R/tab_create_modify.R | 824 +- gt-0.11.0/gt/R/tab_info.R | 98 gt-0.11.0/gt/R/tab_remove.R | 112 gt-0.11.0/gt/R/tab_style_body.R | 42 gt-0.11.0/gt/R/text_transform.R | 171 gt-0.11.0/gt/R/topics.R |only gt-0.11.0/gt/R/utils.R | 894 +- gt-0.11.0/gt/R/utils_examples.R | 111 gt-0.11.0/gt/R/utils_formatters.R | 96 gt-0.11.0/gt/R/utils_general_str_formatting.R | 85 gt-0.11.0/gt/R/utils_plots.R | 107 gt-0.11.0/gt/R/utils_render_common.R | 57 gt-0.11.0/gt/R/utils_render_grid.R |only gt-0.11.0/gt/R/utils_render_html.R | 99 gt-0.11.0/gt/R/utils_render_latex.R | 865 ++ gt-0.11.0/gt/R/utils_render_rtf.R | 84 gt-0.11.0/gt/R/utils_render_xml.R | 434 - gt-0.11.0/gt/R/utils_units.R | 408 + gt-0.11.0/gt/R/z_utils_render_footnotes.R | 176 gt-0.11.0/gt/R/zzz.R | 57 gt-0.11.0/gt/data/constants.rda |binary gt-0.11.0/gt/data/countrypops.rda |binary gt-0.11.0/gt/data/exibble.rda |binary gt-0.11.0/gt/data/films.rda |only gt-0.11.0/gt/data/gibraltar.rda |only gt-0.11.0/gt/data/gtcars.rda |binary gt-0.11.0/gt/data/illness.rda |binary gt-0.11.0/gt/data/metro.rda |binary gt-0.11.0/gt/data/nuclides.rda |only gt-0.11.0/gt/data/peeps.rda |only gt-0.11.0/gt/data/photolysis.rda |only gt-0.11.0/gt/data/pizzaplace.rda |binary gt-0.11.0/gt/data/reactions.rda |only gt-0.11.0/gt/data/rx_addv.rda |binary gt-0.11.0/gt/data/rx_adsl.rda |binary gt-0.11.0/gt/data/sp500.rda |binary gt-0.11.0/gt/data/sza.rda |binary gt-0.11.0/gt/data/towny.rda |binary gt-0.11.0/gt/inst/css/gt_styles_default.scss | 10 gt-0.11.0/gt/inst/gt_tables/fa_icons_vec.rds |only gt-0.11.0/gt/inst/gt_tables/info_conversions.rds |only gt-0.11.0/gt/inst/gt_tables/info_flags.rds |binary gt-0.11.0/gt/inst/gt_tables/info_icons.rds |binary gt-0.11.0/gt/inst/gt_tables/info_paletteer.rds |binary gt-0.11.0/gt/man/adjust_luminance.Rd | 20 gt-0.11.0/gt/man/as_gtable.Rd |only gt-0.11.0/gt/man/as_latex.Rd | 3 gt-0.11.0/gt/man/as_raw_html.Rd | 5 gt-0.11.0/gt/man/as_rtf.Rd | 1 gt-0.11.0/gt/man/as_word.Rd | 5 gt-0.11.0/gt/man/cell_borders.Rd | 33 gt-0.11.0/gt/man/cell_fill.Rd | 27 gt-0.11.0/gt/man/cell_text.Rd | 36 gt-0.11.0/gt/man/cells_body.Rd | 92 gt-0.11.0/gt/man/cells_column_labels.Rd | 80 gt-0.11.0/gt/man/cells_column_spanners.Rd | 89 gt-0.11.0/gt/man/cells_footnotes.Rd | 87 gt-0.11.0/gt/man/cells_grand_summary.Rd | 93 gt-0.11.0/gt/man/cells_group.Rd | 7 gt-0.11.0/gt/man/cells_row_groups.Rd | 90 gt-0.11.0/gt/man/cells_source_notes.Rd | 81 gt-0.11.0/gt/man/cells_stub.Rd | 81 gt-0.11.0/gt/man/cells_stub_grand_summary.Rd | 90 gt-0.11.0/gt/man/cells_stub_summary.Rd | 92 gt-0.11.0/gt/man/cells_stubhead.Rd | 73 gt-0.11.0/gt/man/cells_summary.Rd | 104 gt-0.11.0/gt/man/cells_title.Rd | 75 gt-0.11.0/gt/man/cols_add.Rd | 34 gt-0.11.0/gt/man/cols_align.Rd | 15 gt-0.11.0/gt/man/cols_align_decimal.Rd | 23 gt-0.11.0/gt/man/cols_hide.Rd | 46 gt-0.11.0/gt/man/cols_label.Rd | 30 gt-0.11.0/gt/man/cols_label_with.Rd | 13 gt-0.11.0/gt/man/cols_merge.Rd | 27 gt-0.11.0/gt/man/cols_merge_n_pct.Rd | 32 gt-0.11.0/gt/man/cols_merge_range.Rd | 45 gt-0.11.0/gt/man/cols_merge_uncert.Rd | 34 gt-0.11.0/gt/man/cols_move.Rd | 18 gt-0.11.0/gt/man/cols_move_to_end.Rd | 31 gt-0.11.0/gt/man/cols_move_to_start.Rd | 31 gt-0.11.0/gt/man/cols_nanoplot.Rd | 170 gt-0.11.0/gt/man/cols_unhide.Rd | 30 gt-0.11.0/gt/man/cols_units.Rd | 25 gt-0.11.0/gt/man/cols_width.Rd | 22 gt-0.11.0/gt/man/constants.Rd | 8 gt-0.11.0/gt/man/countrypops.Rd | 6 gt-0.11.0/gt/man/currency.Rd | 18 gt-0.11.0/gt/man/data_color.Rd | 85 gt-0.11.0/gt/man/default_fonts.Rd | 37 gt-0.11.0/gt/man/escape_latex.Rd | 26 gt-0.11.0/gt/man/exibble.Rd | 6 gt-0.11.0/gt/man/extract_body.Rd | 13 gt-0.11.0/gt/man/extract_cells.Rd | 21 gt-0.11.0/gt/man/extract_summary.Rd | 9 gt-0.11.0/gt/man/films.Rd |only gt-0.11.0/gt/man/fmt.Rd | 29 gt-0.11.0/gt/man/fmt_auto.Rd | 53 gt-0.11.0/gt/man/fmt_bins.Rd | 51 gt-0.11.0/gt/man/fmt_bytes.Rd | 71 gt-0.11.0/gt/man/fmt_chem.Rd |only gt-0.11.0/gt/man/fmt_country.Rd |only gt-0.11.0/gt/man/fmt_currency.Rd | 81 gt-0.11.0/gt/man/fmt_date.Rd | 70 gt-0.11.0/gt/man/fmt_datetime.Rd | 70 gt-0.11.0/gt/man/fmt_duration.Rd | 47 gt-0.11.0/gt/man/fmt_email.Rd |only gt-0.11.0/gt/man/fmt_engineering.Rd | 145 gt-0.11.0/gt/man/fmt_flag.Rd | 141 gt-0.11.0/gt/man/fmt_fraction.Rd | 74 gt-0.11.0/gt/man/fmt_icon.Rd | 127 gt-0.11.0/gt/man/fmt_image.Rd | 66 gt-0.11.0/gt/man/fmt_index.Rd | 67 gt-0.11.0/gt/man/fmt_integer.Rd | 74 gt-0.11.0/gt/man/fmt_markdown.Rd | 124 gt-0.11.0/gt/man/fmt_missing.Rd | 16 gt-0.11.0/gt/man/fmt_number.Rd | 88 gt-0.11.0/gt/man/fmt_partsper.Rd | 67 gt-0.11.0/gt/man/fmt_passthrough.Rd | 47 gt-0.11.0/gt/man/fmt_percent.Rd | 75 gt-0.11.0/gt/man/fmt_roman.Rd | 49 gt-0.11.0/gt/man/fmt_scientific.Rd | 168 gt-0.11.0/gt/man/fmt_spelled_num.Rd | 131 gt-0.11.0/gt/man/fmt_tf.Rd |only gt-0.11.0/gt/man/fmt_time.Rd | 69 gt-0.11.0/gt/man/fmt_units.Rd | 32 gt-0.11.0/gt/man/fmt_url.Rd | 120 gt-0.11.0/gt/man/from_column.Rd | 33 gt-0.11.0/gt/man/ggplot_image.Rd | 12 gt-0.11.0/gt/man/gibraltar.Rd |only gt-0.11.0/gt/man/google_font.Rd | 46 gt-0.11.0/gt/man/grand_summary_rows.Rd | 15 gt-0.11.0/gt/man/grp_add.Rd | 6 gt-0.11.0/gt/man/grp_clone.Rd | 4 gt-0.11.0/gt/man/grp_options.Rd | 10 gt-0.11.0/gt/man/grp_pull.Rd | 14 gt-0.11.0/gt/man/grp_replace.Rd | 17 gt-0.11.0/gt/man/grp_rm.Rd | 4 gt-0.11.0/gt/man/gt-package.Rd | 3 gt-0.11.0/gt/man/gt.Rd | 38 gt-0.11.0/gt/man/gt_group.Rd | 2 gt-0.11.0/gt/man/gt_latex_dependencies.Rd | 33 gt-0.11.0/gt/man/gt_output.Rd | 14 gt-0.11.0/gt/man/gt_split.Rd | 7 gt-0.11.0/gt/man/gtcars.Rd | 6 gt-0.11.0/gt/man/gtsave.Rd | 3 gt-0.11.0/gt/man/html.Rd | 22 gt-0.11.0/gt/man/illness.Rd | 8 gt-0.11.0/gt/man/info_currencies.Rd | 25 gt-0.11.0/gt/man/info_date_style.Rd | 26 gt-0.11.0/gt/man/info_flags.Rd | 11 gt-0.11.0/gt/man/info_google_fonts.Rd | 3 gt-0.11.0/gt/man/info_icons.Rd | 8 gt-0.11.0/gt/man/info_locales.Rd | 18 gt-0.11.0/gt/man/info_paletteer.Rd | 27 gt-0.11.0/gt/man/info_time_style.Rd | 26 gt-0.11.0/gt/man/info_unit_conversions.Rd |only gt-0.11.0/gt/man/local_image.Rd | 18 gt-0.11.0/gt/man/location-helper.Rd |only gt-0.11.0/gt/man/md.Rd | 24 gt-0.11.0/gt/man/metro.Rd | 44 gt-0.11.0/gt/man/nanoplot_options.Rd | 22 gt-0.11.0/gt/man/nuclides.Rd |only gt-0.11.0/gt/man/opt_css.Rd | 10 gt-0.11.0/gt/man/opt_horizontal_padding.Rd | 2 gt-0.11.0/gt/man/opt_interactive.Rd | 8 gt-0.11.0/gt/man/opt_row_striping.Rd | 2 gt-0.11.0/gt/man/opt_stylize.Rd | 4 gt-0.11.0/gt/man/opt_table_font.Rd | 22 gt-0.11.0/gt/man/opt_table_lines.Rd | 4 gt-0.11.0/gt/man/opt_vertical_padding.Rd | 2 gt-0.11.0/gt/man/pct.Rd | 18 gt-0.11.0/gt/man/peeps.Rd |only gt-0.11.0/gt/man/photolysis.Rd |only gt-0.11.0/gt/man/pizzaplace.Rd | 16 gt-0.11.0/gt/man/print.gt_tbl.Rd | 11 gt-0.11.0/gt/man/px.Rd | 18 gt-0.11.0/gt/man/random_id.Rd | 25 gt-0.11.0/gt/man/reactions.Rd |only gt-0.11.0/gt/man/render_gt.Rd | 16 gt-0.11.0/gt/man/rm_caption.Rd | 8 gt-0.11.0/gt/man/rm_footnotes.Rd | 12 gt-0.11.0/gt/man/rm_header.Rd | 6 gt-0.11.0/gt/man/rm_source_notes.Rd | 18 gt-0.11.0/gt/man/rm_spanners.Rd | 12 gt-0.11.0/gt/man/rm_stubhead.Rd | 10 gt-0.11.0/gt/man/row_group.Rd |only gt-0.11.0/gt/man/row_group_order.Rd | 13 gt-0.11.0/gt/man/rows_add.Rd | 30 gt-0.11.0/gt/man/rx_addv.Rd | 8 gt-0.11.0/gt/man/rx_adsl.Rd | 8 gt-0.11.0/gt/man/sp500.Rd | 6 gt-0.11.0/gt/man/stub.Rd | 18 gt-0.11.0/gt/man/sub_large_vals.Rd | 34 gt-0.11.0/gt/man/sub_missing.Rd | 37 gt-0.11.0/gt/man/sub_small_vals.Rd | 42 gt-0.11.0/gt/man/sub_values.Rd | 33 gt-0.11.0/gt/man/sub_zero.Rd | 33 gt-0.11.0/gt/man/summary_rows.Rd | 26 gt-0.11.0/gt/man/system_fonts.Rd | 37 gt-0.11.0/gt/man/sza.Rd | 6 gt-0.11.0/gt/man/tab_caption.Rd | 10 gt-0.11.0/gt/man/tab_footnote.Rd | 31 gt-0.11.0/gt/man/tab_header.Rd | 83 gt-0.11.0/gt/man/tab_info.Rd | 15 gt-0.11.0/gt/man/tab_options.Rd | 18 gt-0.11.0/gt/man/tab_row_group.Rd | 39 gt-0.11.0/gt/man/tab_source_note.Rd | 12 gt-0.11.0/gt/man/tab_spanner.Rd | 64 gt-0.11.0/gt/man/tab_spanner_delim.Rd | 82 gt-0.11.0/gt/man/tab_stub_indent.Rd | 111 gt-0.11.0/gt/man/tab_stubhead.Rd | 86 gt-0.11.0/gt/man/tab_style.Rd | 96 gt-0.11.0/gt/man/tab_style_body.Rd | 44 gt-0.11.0/gt/man/text_case_match.Rd | 23 gt-0.11.0/gt/man/text_case_when.Rd | 32 gt-0.11.0/gt/man/text_replace.Rd | 38 gt-0.11.0/gt/man/text_transform.Rd | 21 gt-0.11.0/gt/man/towny.Rd | 6 gt-0.11.0/gt/man/unit_conversion.Rd |only gt-0.11.0/gt/man/vec_fmt_bytes.Rd | 17 gt-0.11.0/gt/man/vec_fmt_currency.Rd | 56 gt-0.11.0/gt/man/vec_fmt_date.Rd | 11 gt-0.11.0/gt/man/vec_fmt_datetime.Rd | 17 gt-0.11.0/gt/man/vec_fmt_duration.Rd | 9 gt-0.11.0/gt/man/vec_fmt_engineering.Rd | 23 gt-0.11.0/gt/man/vec_fmt_fraction.Rd | 9 gt-0.11.0/gt/man/vec_fmt_index.Rd | 9 gt-0.11.0/gt/man/vec_fmt_integer.Rd | 16 gt-0.11.0/gt/man/vec_fmt_markdown.Rd | 8 gt-0.11.0/gt/man/vec_fmt_number.Rd | 20 gt-0.11.0/gt/man/vec_fmt_partsper.Rd | 15 gt-0.11.0/gt/man/vec_fmt_percent.Rd | 17 gt-0.11.0/gt/man/vec_fmt_roman.Rd | 2 gt-0.11.0/gt/man/vec_fmt_scientific.Rd | 23 gt-0.11.0/gt/man/vec_fmt_spelled_num.Rd | 9 gt-0.11.0/gt/man/vec_fmt_time.Rd | 13 gt-0.11.0/gt/man/web_image.Rd | 29 gt-0.11.0/gt/tests/testthat/Rplots.pdf |only gt-0.11.0/gt/tests/testthat/_snaps |only gt-0.11.0/gt/tests/testthat/helper-gt_attr_expectations.R | 2 gt-0.11.0/gt/tests/testthat/helper-render_formats.R | 2 gt-0.11.0/gt/tests/testthat/helper-tab_info.R |only gt-0.11.0/gt/tests/testthat/helper-tab_style.R |only gt-0.11.0/gt/tests/testthat/helper.R |only gt-0.11.0/gt/tests/testthat/test-as_latex.R | 104 gt-0.11.0/gt/tests/testthat/test-cols_align.R | 6 gt-0.11.0/gt/tests/testthat/test-cols_hide.R | 11 gt-0.11.0/gt/tests/testthat/test-cols_move.R | 10 gt-0.11.0/gt/tests/testthat/test-cols_units.R |only gt-0.11.0/gt/tests/testthat/test-conditional_fmt.R | 30 gt-0.11.0/gt/tests/testthat/test-gt_preview.R | 59 gt-0.11.0/gt/tests/testthat/test-l_cols_align.R | 5 gt-0.11.0/gt/tests/testthat/test-l_cols_merge.R | 9 gt-0.11.0/gt/tests/testthat/test-l_cols_move.R | 9 gt-0.11.0/gt/tests/testthat/test-l_conditional_fmt.R | 46 gt-0.11.0/gt/tests/testthat/test-l_fmt_currency.R | 108 gt-0.11.0/gt/tests/testthat/test-l_fmt_date_time.R | 262 gt-0.11.0/gt/tests/testthat/test-l_fmt_engineering.R | 216 gt-0.11.0/gt/tests/testthat/test-l_fmt_integer.R | 64 gt-0.11.0/gt/tests/testthat/test-l_fmt_markdown.R | 2 gt-0.11.0/gt/tests/testthat/test-l_fmt_missing.R | 6 gt-0.11.0/gt/tests/testthat/test-l_fmt_number.R | 82 gt-0.11.0/gt/tests/testthat/test-l_fmt_passthrough.R | 2 gt-0.11.0/gt/tests/testthat/test-l_fmt_percent.R | 86 gt-0.11.0/gt/tests/testthat/test-l_fmt_scientific.R | 74 gt-0.11.0/gt/tests/testthat/test-l_row_group_order.R | 2 gt-0.11.0/gt/tests/testthat/test-l_tab_spanner_delim.R | 5 gt-0.11.0/gt/tests/testthat/test-render_as_gtable.R |only gt-0.11.0/gt/tests/testthat/test-resolver.R | 24 gt-0.11.0/gt/tests/testthat/test-row_group_order.R | 14 gt-0.11.0/gt/tests/testthat/test-tab_caption.R | 14 322 files changed, 14319 insertions(+), 10823 deletions(-)
Title: Clinical Trial Registry History
Description: Retrieves historical versions of clinical trial registry
entries from <https://ClinicalTrials.gov>. Package functionality
and implementation for v 1.0.0 is documented in Carlisle (2022)
<DOI:10.1371/journal.pone.0270909>.
Author: Benjamin Gregory Carlisle [aut, cre]
Maintainer: Benjamin Gregory Carlisle <murph@bgcarlisle.com>
Diff between cthist versions 2.1.9 dated 2024-06-01 and 2.1.10 dated 2024-07-09
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 8 ++++++++ R/clinicaltrials_gov_download.R | 30 ++++++++++++++++++------------ build/partial.rdb |binary man/clinicaltrials_gov_download.Rd | 9 ++++++++- man/clinicaltrials_gov_version.Rd | 8 ++++---- 7 files changed, 48 insertions(+), 27 deletions(-)
Title: Compute and Plot Zonohedra from Vector Generators
Description: Computes a zonohedron from real vector generators. The package also computes zonogons (2D zonotopes) and zonosegs (1D zonotopes). An elementary S3 class for matroids is included, which supports matroids with rank 3, 2, and 1. Optimization methods are taken from Heckbert (1985) <https://www.cs.cmu.edu/~ph/zono.ps.gz>.
Author: Glenn Davis [aut, cre]
Maintainer: Glenn Davis <gdavis@gluonics.com>
Diff between zonohedra versions 0.2-2 dated 2023-05-31 and 0.3-0 dated 2024-07-09
DESCRIPTION | 8 MD5 | 80 +++++---- NEWS.md | 12 + R/matroid.R | 47 ++++- R/trans2.R | 40 ++++ build/vignette.rds |binary inst/doc/matroids.R | 2 inst/doc/matroids.html | 22 +- inst/doc/raytrace.R | 32 +-- inst/doc/raytrace.Rmd | 16 - inst/doc/raytrace.html | 53 +++--- inst/doc/transitions.R | 18 +- inst/doc/transitions.Rmd | 11 - inst/doc/transitions.html | 156 ++++++++++++------- inst/doc/zonohedra-guide.R | 18 +- inst/doc/zonohedra-guide.Rmd | 8 inst/doc/zonohedra-guide.html | 156 ++++++++++++------- inst/doc/zonotopes.R | 8 inst/doc/zonotopes.Rmd | 19 +- inst/doc/zonotopes.html | 46 ++--- man/inside2trans.Rd | 36 ++-- src/CharSEXP.h | 2 src/area.c |only src/area.h |only src/clipping.c |only src/clipping.h |only src/dbl_dig.c | 2 src/dupAtomMatHash.cpp | 28 +-- src/init.c | 7 src/linking.c | 343 ------------------------------------------ src/linking2.c |only src/linking3.c |only src/matdat.c | 2 src/matroid.c | 223 ++++++++++++++------------- src/pgram.c | 59 +++---- src/trans2.c | 20 +- src/transitions.c | 10 - src/utils.c | 16 - src/zonohedron.c | 88 ++++++---- vignettes/bibliography.bib | 15 + vignettes/raytrace.Rmd | 16 - vignettes/transitions.Rmd | 11 - vignettes/zonohedra-guide.Rmd | 8 vignettes/zonotopes.Rmd | 19 +- 44 files changed, 779 insertions(+), 878 deletions(-)
Title: Tools for Summarising and Analysing Soundscape Data
Description: A variety of tools relevant to the analysis
of marine soundscape data. There are tools for downloading AIS (automatic identification system)
data from Marine Cadastre <https://marinecadastre.gov/ais/>,
connecting AIS data to GPS coordinates, plotting summaries of various soundscape
measurements, and downloading relevant environmental variables (wind, swell height) from the
National Center for Atmospheric Research data server <https://rda.ucar.edu/datasets/ds084.1/>.
Most tools were developed to work well with output from 'Triton' software, but can be adapted
to work with any similar measurements.
Author: Taiki Sakai [aut, cre],
Anne Simonis [ctb],
Shannon Rankin [ctb],
Megan McKenna [ctb],
Kaitlin Palmer [ctb]
Maintainer: Taiki Sakai <taiki.sakai@noaa.gov>
Diff between PAMscapes versions 0.5.8 dated 2024-06-11 and 0.6.0 dated 2024-07-09
DESCRIPTION | 6 ++-- MD5 | 36 +++++++++++++------------- NAMESPACE | 4 ++ NEWS.md | 8 +++++ R/checkSoundscapeInput.R | 4 +- R/downloadMarCadAIS.R | 7 ++--- R/loadMantaNc.R | 56 +++++++++++++++++++++++++++++++++++++---- R/matchGFS.R | 5 ++- R/plotAcousticScene.R | 9 +++++- R/plotHourlyLevel.R | 13 ++++++--- R/plotLTSA.R |only R/plotPSD.R | 23 ++++++++++------ R/plotTimeseries.R | 47 +++++++++++++--------------------- R/utils.R | 55 ++++++++++++++++++++++++++-------------- man/downloadMarCadAIS.Rd | 7 ++--- man/plotAcousticScene.Rd | 3 ++ man/plotHourlyLevel.Rd | 2 - man/plotLTSA.Rd |only man/plotTimeseries.Rd | 2 - tests/testthat/test-dataprep.R | 3 ++ 20 files changed, 190 insertions(+), 100 deletions(-)
Title: Stable Balancing Weights for Causal Inference and Missing Data
Description: Implements the Stable Balancing Weights by Zubizarreta (2015) <DOI:10.1080/01621459.2015.1023805>. These are the weights of minimum variance that approximately balance the empirical distribution of the observed covariates. For an overview, see Chattopadhyay, Hase and Zubizarreta (2020) <DOI:10.1002/sim.8659>. To solve the optimization problem in 'sbw', the default solver is 'quadprog', which is readily available through CRAN. The solver 'osqp' is also posted on CRAN. To enhance the performance of 'sbw', users are encouraged to install other solvers such as 'gurobi' and 'Rmosek', which require special installation. For the installation of gurobi and pogs, please follow the instructions at <https://www.gurobi.com/documentation/current/refman/r_ins_the_r_package.html> and <http://foges.github.io/pogs/stp/r>.
Author: Jose R. Zubizarreta [aut, cre],
Yige Li [aut],
Kwangho Kim [aut],
Amine Allouah [ctb],
Noah Greifer [ctb]
Maintainer: Jose R. Zubizarreta <zubizarreta@hcp.med.harvard.edu>
Diff between sbw versions 1.1.5 dated 2021-09-22 and 1.1.8 dated 2024-07-09
DESCRIPTION | 15 ++++++------ MD5 | 34 ++++++++++++++--------------- NAMESPACE | 2 - R/data.R | 4 +-- R/estimate.R | 42 ++++++++++++++++++------------------ R/propar.R | 8 ++++-- R/sbw.R | 64 +++++++++++++++++++++++++++++++------------------------ R/sbwauxfix.R | 16 +++++++------ R/sbwcaufix.R | 8 +++--- R/sbwcautun.R | 8 +++--- R/sbwfix.R | 2 - R/sbwpri.R | 43 ++++++++++++++++++------------------ R/sbwtun.R | 2 - R/summarize.R | 22 +++++++++--------- R/visualize.R | 22 +++++++++--------- man/lalonde.Rd | 8 ++++-- man/sbw.Rd | 49 ++++++++++++++++++++++-------------------- man/summarize.Rd | 10 ++++---- 18 files changed, 189 insertions(+), 170 deletions(-)
Title: Automated Cleaning of Fossil Occurrence Data
Description: Functions to automate the detection and resolution of taxonomic and stratigraphic errors in fossil occurrence datasets. Functions were developed using data from the Paleobiology Database.
Author: Joe Flannery-Sutherland [aut, cre]
,
Nussaibah Raja-Schoob [aut, ctb],
Adam Kocsis [aut, ctb],
Wolfgang Kiessling [aut]
Maintainer: Joe Flannery-Sutherland <jf15558@bristol.ac.uk>
Diff between fossilbrush versions 1.0.3 dated 2022-07-21 and 1.0.5 dated 2024-07-09
fossilbrush-1.0.3/fossilbrush/R/GTS2020.R |only fossilbrush-1.0.3/fossilbrush/R/GTS2020_changelog.R |only fossilbrush-1.0.3/fossilbrush/R/get_pbdb.R |only fossilbrush-1.0.3/fossilbrush/data/GTS2020.rda |only fossilbrush-1.0.3/fossilbrush/data/GTS2020_changelog.rda |only fossilbrush-1.0.3/fossilbrush/man/GTS2020.Rd |only fossilbrush-1.0.3/fossilbrush/man/GTS2020_changelog.Rd |only fossilbrush-1.0.3/fossilbrush/man/get_pbdb.Rd |only fossilbrush-1.0.5/fossilbrush/DESCRIPTION | 12 fossilbrush-1.0.5/fossilbrush/MD5 | 49 fossilbrush-1.0.5/fossilbrush/NAMESPACE | 4 fossilbrush-1.0.5/fossilbrush/R/GTS_2020.R |only fossilbrush-1.0.5/fossilbrush/R/GTS_2020_changelog.R |only fossilbrush-1.0.5/fossilbrush/R/add_itp.R | 144 - fossilbrush-1.0.5/fossilbrush/R/age_ranges.R | 210 +- fossilbrush-1.0.5/fossilbrush/R/check_taxonomy.R | 1005 +++++----- fossilbrush-1.0.5/fossilbrush/R/chrono_scale.R | 337 +-- fossilbrush-1.0.5/fossilbrush/R/densify.R | 4 fossilbrush-1.0.5/fossilbrush/R/format_check.R | 154 - fossilbrush-1.0.5/fossilbrush/R/spell_check.R | 519 ++--- fossilbrush-1.0.5/fossilbrush/build/vignette.rds |binary fossilbrush-1.0.5/fossilbrush/data/GTS_2020.rda |only fossilbrush-1.0.5/fossilbrush/data/GTS_2020_changelog.rda |only fossilbrush-1.0.5/fossilbrush/inst/CITATION |only fossilbrush-1.0.5/fossilbrush/inst/doc/fossilbrush_vignette.R | 6 fossilbrush-1.0.5/fossilbrush/inst/doc/fossilbrush_vignette.Rmd | 14 fossilbrush-1.0.5/fossilbrush/inst/doc/fossilbrush_vignette.pdf |binary fossilbrush-1.0.5/fossilbrush/man/GTS_2020.Rd |only fossilbrush-1.0.5/fossilbrush/man/GTS_2020_changelog.Rd |only fossilbrush-1.0.5/fossilbrush/man/add_itp.Rd | 2 fossilbrush-1.0.5/fossilbrush/man/check_taxonomy.Rd | 8 fossilbrush-1.0.5/fossilbrush/man/chrono_scale.Rd | 6 fossilbrush-1.0.5/fossilbrush/vignettes/fossilbrush_vignette.Rmd | 14 33 files changed, 1255 insertions(+), 1233 deletions(-)
Title: Causal Effect Identification from Multiple Incomplete Data
Sources
Description: Identification of causal effects from arbitrary observational and
experimental probability distributions via do-calculus and standard
probability manipulations using a search-based algorithm by
Tikka, Hyttinen and Karvanen (2021) <doi:10.18637/jss.v099.i05>.
Allows for the presence of mechanisms related to selection bias
(Bareinboim and Tian, 2015) <doi:10.1609/aaai.v29i1.9679>,
transportability (Bareinboim and Pearl, 2014)
<http://ftp.cs.ucla.edu/pub/stat_ser/r443.pdf>,
missing data (Mohan, Pearl, and Tian, 2013)
<http://ftp.cs.ucla.edu/pub/stat_ser/r410.pdf>) and arbitrary combinations
of these. Also supports identification in the presence of context-specific
independence (CSI) relations through labeled directed acyclic graphs
(LDAG). For details on CSIs see (Corander et al., 2019)
<doi:10.1016/j.apal.2019.04.004>.
Author: Santtu Tikka [aut, cre] ,
Antti Hyttinen [ctb] ,
Juha Karvanen [ctb]
Maintainer: Santtu Tikka <santtuth@gmail.com>
Diff between dosearch versions 1.0.8 dated 2021-08-19 and 1.0.10 dated 2024-07-09
dosearch-1.0.10/dosearch/DESCRIPTION | 39 dosearch-1.0.10/dosearch/MD5 | 75 dosearch-1.0.10/dosearch/NAMESPACE | 19 dosearch-1.0.10/dosearch/NEWS.md |only dosearch-1.0.10/dosearch/R/RcppExports.R | 54 dosearch-1.0.10/dosearch/R/dosearch-package.R |only dosearch-1.0.10/dosearch/R/dosearch.R | 951 +++++++-- dosearch-1.0.10/dosearch/R/internal.R | 1346 +++--------- dosearch-1.0.10/dosearch/R/internal_dag.R |only dosearch-1.0.10/dosearch/R/internal_ldag.R |only dosearch-1.0.10/dosearch/R/srr-stats-standards.R |only dosearch-1.0.10/dosearch/build |only dosearch-1.0.10/dosearch/data/bivariate_missingness.rda |only dosearch-1.0.10/dosearch/inst/doc |only dosearch-1.0.10/dosearch/man/bivariate_missingness.Rd | 45 dosearch-1.0.10/dosearch/man/dosearch-package.Rd | 151 - dosearch-1.0.10/dosearch/man/dosearch.Rd | 497 +++- dosearch-1.0.10/dosearch/man/print.summary.dosearch.Rd |only dosearch-1.0.10/dosearch/src/csisearch.cpp | 1261 +++++------- dosearch-1.0.10/dosearch/src/csisearch.h | 83 dosearch-1.0.10/dosearch/src/dcongraph.cpp | 290 +- dosearch-1.0.10/dosearch/src/dcongraph.h | 89 dosearch-1.0.10/dosearch/src/derivation.cpp | 32 dosearch-1.0.10/dosearch/src/derivation.h | 20 dosearch-1.0.10/dosearch/src/dosearch.cpp | 1564 ++++++--------- dosearch-1.0.10/dosearch/src/dosearch.h | 87 dosearch-1.0.10/dosearch/src/initialize_csisearch.cpp | 226 +- dosearch-1.0.10/dosearch/src/initialize_dosearch.cpp | 194 - dosearch-1.0.10/dosearch/src/ldag.cpp | 537 ++--- dosearch-1.0.10/dosearch/src/ldag.h | 108 - dosearch-1.0.10/dosearch/src/search.cpp | 462 ++-- dosearch-1.0.10/dosearch/src/search.h | 123 - dosearch-1.0.10/dosearch/src/set.cpp | 54 dosearch-1.0.10/dosearch/src/set.h | 2 dosearch-1.0.10/dosearch/tests |only dosearch-1.0.10/dosearch/vignettes |only dosearch-1.0.8/dosearch/NEWS |only dosearch-1.0.8/dosearch/data/bivariate_missingness.RData |only dosearch-1.0.8/dosearch/man/get_benchmark.Rd |only dosearch-1.0.8/dosearch/man/get_derivation.Rd |only dosearch-1.0.8/dosearch/man/get_formula.Rd |only dosearch-1.0.8/dosearch/man/is_identifiable.Rd |only dosearch-1.0.8/dosearch/src/Makevars |only dosearch-1.0.8/dosearch/src/Makevars.win |only 44 files changed, 4102 insertions(+), 4207 deletions(-)
Title: Multiple Imputation for Recurrent Events
Description: Performs reference based multiple imputation of recurrent event data
based on a negative binomial regression model, as described
by Keene et al (2014) <doi:10.1002/pst.1624>.
Author: Nikolas Burkoff [aut],
Paul Metcalfe [aut],
Jonathan Bartlett [aut, cre],
David Ruau [aut]
Maintainer: Jonathan Bartlett <jonathan.bartlett1@lshtm.ac.uk>
Diff between dejaVu versions 0.3.0 dated 2021-04-27 and 0.3.1 dated 2024-07-09
DESCRIPTION | 12 MD5 | 148 ++-- NAMESPACE | 92 +- NEWS.md | 22 R/DropoutMechanism.R | 152 ++-- R/ImputeMechanism.R | 140 ++-- R/ImputeSim.R | 200 ++--- R/ImputeSimFit.R | 256 +++---- R/SingleSim.R | 492 +++++++------- R/SingleSimFit.R | 306 ++++---- R/common.R | 202 ++--- R/copyRefImpute.r | 152 ++-- R/data.r | 32 R/dejaData.R | 202 ++--- R/expander.R | 100 +- R/import.R | 436 ++++++------ R/internalSingleSim.R | 178 ++--- R/scenario.R | 362 +++++----- R/specificDropoutMechanisms.R | 222 +++--- R/specificImputeMechanisms.R | 250 +++---- R/uncertainty.R | 166 ++-- R/validate.R | 258 +++---- README.md | 67 - build/vignette.rds |binary inst/data-raw/genExampleData.r | 102 +- inst/doc/UserGuide.R | 696 +++++++++---------- inst/doc/UserGuide.Rnw | 1120 ++++++++++++++++---------------- inst/doc/UserGuide.pdf |binary inst/doc/analysingExistingDatasets.R | 82 +- inst/doc/analysingExistingDatasets.Rnw | 222 +++--- inst/doc/analysingExistingDatasets.pdf |binary man/ConstantRateDrop.Rd | 58 - man/CreateNewDropoutMechanism.Rd | 76 +- man/CreateNewImputeMechanism.Rd | 74 +- man/CreateScenario.Rd | 48 - man/DejaData.object.Rd | 46 - man/DropoutMechanism.object.Rd | 82 +- man/GetImputedDataSet.Rd | 66 - man/ImportSim.Rd | 150 ++-- man/Impute.Rd | 64 - man/ImputeMechanism.object.Rd | 80 +- man/ImputeSim.object.Rd | 60 - man/ImputeSimFit.object.Rd | 50 - man/LinearRateChangeDrop.Rd | 66 - man/MakeDejaData.Rd | 76 +- man/Scenario.object.Rd | 42 - man/Simfit.Rd | 84 +- man/SimulateComplete.Rd | 104 +- man/SimulateDropout.Rd | 66 - man/SingleSim.object.Rd | 86 +- man/SingleSimFit.object.Rd | 50 - man/copy_reference.Rd | 70 +- man/expandEventCount.Rd | 60 - man/extract_results.Rd | 52 - man/numberSubjects.Rd | 44 - man/simData.Rd | 56 - man/subjectsPerArm.Rd | 44 - man/summary.ImputeSimFit.object.Rd | 68 - man/summary.Scenario.object.Rd | 64 - man/summary.SingleSim.object.Rd | 50 - man/summary.SingleSimFit.Rd | 92 +- man/weighted_j2r.Rd | 110 +-- tests/classdiagram.Rmd | 82 +- tests/testthat.R | 6 tests/testthat/test-CopyReference.R | 266 +++---- tests/testthat/test-Impute.R | 492 +++++++------- tests/testthat/test-Scenario.R | 310 ++++---- tests/testthat/test-SimFit.R | 434 ++++++------ tests/testthat/test-SingleSim.R | 358 +++++----- tests/testthat/test-dejaData.R | 164 ++-- tests/testthat/test-expandEventCount.R | 172 ++-- tests/testthat/test-uncertainty.R | 154 ++-- vignettes/UserGuide.Rnw | 1120 ++++++++++++++++---------------- vignettes/analysingExistingDatasets.Rnw | 222 +++--- vignettes/userguide.bib | 10 75 files changed, 6304 insertions(+), 6293 deletions(-)
Title: Check User-Supplied Function Arguments
Description: For developers to check user-supplied function arguments. It
is designed to be simple, fast and customizable. Error messages
follow the tidyverse style guide.
Author: Joe Thorley [aut, cre] ,
Kirill Mueller [aut] ,
Ayla Pearson [aut] ,
Nadine Hussein [ctb] ,
Evan Amies-Galonski [ctb] ,
Poisson Consulting [cph, fnd]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between chk versions 0.9.1 dated 2023-10-05 and 0.9.2 dated 2024-07-09
DESCRIPTION | 8 +- LICENSE | 2 MD5 | 62 ++++++++++---------- NEWS.md | 6 + R/check-key.R | 4 - R/chk-join.R | 1 README.md | 11 ++- build/vignette.rds |binary inst/WORDLIST | 1 inst/doc/chk-families.html | 136 ++++++++++++++++++++++----------------------- inst/doc/chk.html | 4 - man/chk_all_equal.Rd | 4 - man/chk_all_equivalent.Rd | 4 - man/chk_all_identical.Rd | 4 - man/chk_count.Rd | 2 man/chk_double.Rd | 2 man/chk_environment.Rd | 2 man/chk_factor.Rd | 2 man/chk_gt.Rd | 2 man/chk_gte.Rd | 2 man/chk_integer.Rd | 2 man/chk_list.Rd | 2 man/chk_logical.Rd | 2 man/chk_lt.Rd | 2 man/chk_lte.Rd | 2 man/chk_number.Rd | 2 man/chk_range.Rd | 6 - man/chk_scalar.Rd | 2 man/chk_string.Rd | 2 man/chk_tz.Rd | 2 man/chk_whole_number.Rd | 2 man/p.Rd | 3 32 files changed, 151 insertions(+), 137 deletions(-)
Title: Query 'SWI'-'Prolog' from R
Description: This R package connects to SWI-Prolog, <https://www.swi-prolog.org/>, so that R can send deterministic and non-deterministic queries to prolog (consult, query/submit, once, findall).
Author: Matthias Gondan [aut, com, cre] ,
European Commission [fnd]
Maintainer: Matthias Gondan <Matthias.Gondan-Rochon@uibk.ac.at>
Diff between rolog versions 0.9.17 dated 2024-05-01 and 0.9.18 dated 2024-07-09
DESCRIPTION | 8 - MD5 | 10 +- NEWS.md | 6 + inst/doc/rolog.html | 34 +++---- src/Makevars | 2 src/crolog.cpp | 225 ++++++++++++++++++++++++++++------------------------ 6 files changed, 155 insertions(+), 130 deletions(-)
Title: Power Analyses for Interaction Effects in Cross-Sectional
Regressions
Description: Power analysis for regression models which test the interaction of
two or three independent variables on a single dependent variable. Includes options
for correlated interacting variables and specifying variable reliability.
Two-way interactions can include continuous, binary, or ordinal variables.
Power analyses can be done either analytically or via simulation. Includes
tools for simulating single data sets and visualizing power analysis results.
The primary functions are power_interaction_r2() and power_interaction() for two-way
interactions, and power_interaction_3way_r2() for three-way interactions.
Please cite as: Baranger DAA, Finsaas MC, Goldstein BL, Vize CE, Lynam DR,
Olino TM (2023). "Tutorial: Power analyses for interaction effects in
cross-sectional regressions." <doi:10.1177/25152459231187531>.
Author: David Baranger [aut, cre] ,
Brandon Goldstein [ctb],
Megan Finsaas [ctb],
Thomas Olino [ctb],
Colin Vize [ctb],
Don Lynam [ctb]
Maintainer: David Baranger <dbaranger@gmail.com>
Diff between InteractionPoweR versions 0.2.1 dated 2023-04-18 and 0.2.2 dated 2024-07-09
DESCRIPTION | 25 +++++++++-------- MD5 | 30 +++++++++++++-------- NAMESPACE | 41 ++++++++++++++++------------- NEWS.md | 14 +++++++++ R/generate_interaction.R | 24 ++++++++++++++++- R/plot_power_curve.R | 15 ++++++++++ R/plots.3way.R |only R/power_estimate.R | 46 +++++++++++++++++++++----------- R/power_interaction.R | 4 +- R/power_interaction_3way_r2.R |only R/power_interaction_r2.R | 48 +++++++++++++++++++++++----------- R/power_interaction_r2_covs.R |only README.md | 45 +++++++++++++++++-------------- inst/CITATION | 8 +++-- man/cor.mat.3way.Rd |only man/generate.interaction.cov.input.Rd |only man/power_interaction_3way_r2.Rd |only man/power_interaction_r2.Rd | 8 ++--- man/power_interaction_r2_covs.Rd |only man/simple.slopes.3way.Rd |only 20 files changed, 205 insertions(+), 103 deletions(-)
More information about InteractionPoweR at CRAN
Permanent link
Title: Wrangle and Analyze Growth Curve Data
Description: Easy wrangling and model-free analysis of
microbial growth curve data, as commonly output by plate readers.
Tools for reshaping common plate reader outputs into 'tidy' formats and
merging them with design information, making data easy to work with using
'gcplyr' and other packages. Also streamlines common growth curve
processing steps, like smoothing and calculating derivatives, and
facilitates model-free characterization and analysis of growth data.
See methods at <https://mikeblazanin.github.io/gcplyr/>.
Author: Mike Blazanin [aut, cre]
Maintainer: Mike Blazanin <mikeblazanin@gmail.com>
Diff between gcplyr versions 1.9.0 dated 2024-03-11 and 1.10.0 dated 2024-07-09
DESCRIPTION | 10 MD5 | 115 - NAMESPACE | 4 NEWS.md | 14 R/functions.R | 594 ++++++---- R/utility_functions.R | 5 README.md | 7 inst/CITATION | 12 inst/doc/gc01_gcplyr.pdf |binary inst/doc/gc02_import_reshape.pdf |binary inst/doc/gc03_incorporate_designs.pdf |binary inst/doc/gc04_preprocess_plot.pdf |binary inst/doc/gc05_process.pdf |binary inst/doc/gc06_analyze.R | 14 inst/doc/gc06_analyze.Rmd | 30 inst/doc/gc06_analyze.pdf |binary inst/doc/gc07_noise.pdf |binary inst/doc/gc08_conclusion.Rmd | 12 inst/doc/gc08_conclusion.pdf |binary inst/doc/gc09_multiple_plates.Rmd | 1 inst/doc/gc09_multiple_plates.pdf |binary inst/doc/gc10_using_make_design.pdf |binary man/CentroidFunctions.Rd |only man/ExtremaFunctions.Rd | 2 man/block_tidydesign.Rd | 2 man/calc_deriv.Rd | 4 man/first_peak.Rd | 4 man/gc_smooth.spline.Rd | 8 man/import_blockdesigns.Rd | 104 + man/import_blockmeasures.Rd | 20 man/make_design.Rd | 4 man/make_designpattern.Rd | 2 man/makemethod_train_smooth_data.Rd | 14 man/merge_dfs.Rd | 11 man/paste_blocks.Rd | 4 man/read_blocks.Rd | 40 man/read_tidys.Rd | 36 man/read_wides.Rd | 32 man/separate_tidy.Rd | 14 man/smooth_data.Rd | 27 man/train_smooth_data.Rd | 27 man/trans_block_to_wide.Rd | 4 man/trans_wide_to_tidy.Rd | 4 man/write_blocks.Rd | 4 tests/testthat/allfunctions_argumentsmatching_files/full_matches_ref.csv | 2 tests/testthat/allfunctions_argumentsmatching_files/gcplyr_function_subfunction_calls.csv | 4 tests/testthat/test_analysisfunctions.R | 48 tests/testthat/test_importfunctions.R | 30 vignettes/gc01_gcplyr.html | 60 - vignettes/gc02_import_reshape.html | 14 vignettes/gc03_incorporate_designs.html | 90 - vignettes/gc06_analyze.Rmd | 30 vignettes/gc06_analyze.html | 312 +++-- vignettes/gc07_noise.html | 16 vignettes/gc08_conclusion.Rmd | 12 vignettes/gc08_conclusion.html | 38 vignettes/gc09_multiple_plates.Rmd | 1 vignettes/gc09_multiple_plates.html | 90 - vignettes/gc10_using_make_design.html | 47 59 files changed, 1218 insertions(+), 761 deletions(-)
Title: Recursive Non-Additive Emulator for Multi-Fidelity Data
Description: Performs RNA emulation and active learning proposed by Heo and Sung (2024) <doi:10.1080/00401706.2024.2376173> for multi-fidelity computer experiments. The RNA emulator is particularly useful when the simulations with different fidelity level are nonlinearly correlated. The hyperparameters in the model are estimated by maximum likelihood estimation.
Author: Junoh Heo [aut, cre],
Chih-Li Sung [aut]
Maintainer: Junoh Heo <heojunoh@msu.edu>
Diff between RNAmf versions 0.1.2 dated 2024-03-22 and 1.0.0 dated 2024-07-09
DESCRIPTION | 8 +- MD5 | 39 +++++++------- NAMESPACE | 2 R/ALC.R | 48 ++++++++--------- R/ALD.R |only R/ALM.R | 61 ++++++++++------------ R/ALMC.R | 70 +++++++++++--------------- R/GP.R | 13 ++-- R/NestedX.R | 2 R/RNAmf_three_level.R | 2 R/RNAmf_two_level.R | 2 R/matGP.R | 12 ++-- R/predict.RNAmf.R | 126 +++++++++++++++++++++++------------------------ build |only man/ALC_RNAmf.Rd | 6 +- man/ALD_RNAmf.Rd |only man/ALMC_RNAmf.Rd | 8 +- man/ALM_RNAmf.Rd | 7 +- man/NestedX.Rd | 2 man/RNAmf_three_level.Rd | 2 man/RNAmf_two_level.Rd | 2 man/predict.Rd | 2 22 files changed, 206 insertions(+), 208 deletions(-)
Title: A Shiny App for Design of Experiments in Life Sciences
Description: A shiny design of experiments (DOE) app that aids in the creation of traditional,
un-replicated, augmented and partially-replicated designs applied to agriculture,
plant breeding, forestry, animal and biological sciences.
Author: Didier Murillo [cre, aut],
Salvador Gezan [aut],
Ana Heilman [ctb],
Thomas Walk [ctb],
Johan Aparicio [ctb],
Matthew Seefeldt [ctb],
Jean-Marc Montpetit [ctb],
Richard Horsley [ctb],
North Dakota State University [cph]
Maintainer: Didier Murillo <didier.murilloflorez@ndsu.edu>
Diff between FielDHub versions 1.3.7 dated 2024-03-28 and 1.4.0 dated 2024-07-09
FielDHub-1.3.7/FielDHub/inst/doc/incomplete_blocks.R |only FielDHub-1.3.7/FielDHub/inst/doc/incomplete_blocks.Rmd |only FielDHub-1.3.7/FielDHub/inst/doc/incomplete_blocks.html |only FielDHub-1.3.7/FielDHub/inst/doc/rectangular_lattice.R |only FielDHub-1.3.7/FielDHub/inst/doc/rectangular_lattice.Rmd |only FielDHub-1.3.7/FielDHub/inst/doc/rectangular_lattice.html |only FielDHub-1.3.7/FielDHub/inst/doc/square_lattice.R |only FielDHub-1.3.7/FielDHub/inst/doc/square_lattice.Rmd |only FielDHub-1.3.7/FielDHub/inst/doc/square_lattice.html |only FielDHub-1.3.7/FielDHub/vignettes/incomplete_blocks.Rmd |only FielDHub-1.3.7/FielDHub/vignettes/rectangular_lattice.Rmd |only FielDHub-1.3.7/FielDHub/vignettes/square_lattice.Rmd |only FielDHub-1.4.0/FielDHub/DESCRIPTION | 8 FielDHub-1.4.0/FielDHub/MD5 | 85 ++-- FielDHub-1.4.0/FielDHub/R/app_ui.R | 2 FielDHub-1.4.0/FielDHub/R/fct_alpha_lattice.R | 3 FielDHub-1.4.0/FielDHub/R/fct_do_optim.R | 17 FielDHub-1.4.0/FielDHub/R/fct_incomplete_blocks.R | 54 -- FielDHub-1.4.0/FielDHub/R/fct_rectangular_lattice.R | 3 FielDHub-1.4.0/FielDHub/R/fct_square_lattice.R | 7 FielDHub-1.4.0/FielDHub/R/globals.R | 2 FielDHub-1.4.0/FielDHub/R/ibd_reorder_treatments.R |only FielDHub-1.4.0/FielDHub/R/mod_Alpha_Lattice.R | 16 FielDHub-1.4.0/FielDHub/R/mod_IBD.R | 17 FielDHub-1.4.0/FielDHub/R/mod_RCBD_augmented.R | 218 ++++++++---- FielDHub-1.4.0/FielDHub/R/mod_Rectangular_Lattice.R | 16 FielDHub-1.4.0/FielDHub/R/mod_Square_Lattice.R | 18 FielDHub-1.4.0/FielDHub/R/mod_pREPS.R | 15 FielDHub-1.4.0/FielDHub/R/run_app.R | 5 FielDHub-1.4.0/FielDHub/R/utils_S3_methods.R | 22 + FielDHub-1.4.0/FielDHub/R/utils_diagonals_checks.R | 34 - FielDHub-1.4.0/FielDHub/R/utils_names_layout.R | 21 - FielDHub-1.4.0/FielDHub/R/utils_plot_RCBD.R | 14 FielDHub-1.4.0/FielDHub/R/utils_plot_diagonal_arrangement.R | 21 + FielDHub-1.4.0/FielDHub/R/utils_plot_iblocks_1.R | 32 + FielDHub-1.4.0/FielDHub/R/utils_plot_latinSQ.R | 9 FielDHub-1.4.0/FielDHub/R/utils_plot_layout.R | 2 FielDHub-1.4.0/FielDHub/R/utils_plot_splitPlots.R | 35 - FielDHub-1.4.0/FielDHub/build/vignette.rds |binary FielDHub-1.4.0/FielDHub/inst/doc/RCBD_augmented.html | 4 FielDHub-1.4.0/FielDHub/inst/doc/alpha_lattice.html | 47 +- FielDHub-1.4.0/FielDHub/inst/doc/diagonal_arrangement.html | 4 FielDHub-1.4.0/FielDHub/inst/doc/full_factorial.html | 2 FielDHub-1.4.0/FielDHub/inst/doc/multi_location_prep.html | 68 +-- FielDHub-1.4.0/FielDHub/inst/doc/optimized_arrangement.html | 46 +- FielDHub-1.4.0/FielDHub/inst/doc/partially_replicated.html | 5 FielDHub-1.4.0/FielDHub/inst/doc/rcbd.html | 2 FielDHub-1.4.0/FielDHub/inst/doc/row_column.html | 42 +- FielDHub-1.4.0/FielDHub/inst/doc/sparse_allocation.html | 26 - FielDHub-1.4.0/FielDHub/inst/doc/split_plot.html | 2 50 files changed, 556 insertions(+), 368 deletions(-)
Title: Multivariate t Distribution
Description: Distance between multivariate t distributions, as presented by N. Bouhlel and D. Rousseau (2023) <doi:10.1109/LSP.2023.3324594>.
Author: Pierre Santagostini [aut, cre],
Nizar Bouhlel [aut]
Maintainer: Pierre Santagostini <pierre.santagostini@agrocampus-ouest.fr>
Diff between mstudentd versions 1.0.0 dated 2024-03-22 and 1.1.1 dated 2024-07-09
mstudentd-1.0.0/mstudentd/README.md |only mstudentd-1.1.1/mstudentd/DESCRIPTION | 10 mstudentd-1.1.1/mstudentd/MD5 | 25 - mstudentd-1.1.1/mstudentd/NAMESPACE | 1 mstudentd-1.1.1/mstudentd/R/dlauricella.R |only mstudentd-1.1.1/mstudentd/R/kldstudent.R | 486 ++++------------------------ mstudentd-1.1.1/mstudentd/R/lauricella.R | 145 ++++++-- mstudentd-1.1.1/mstudentd/R/plotmtd.R | 8 mstudentd-1.1.1/mstudentd/R/rmtd.R | 2 mstudentd-1.1.1/mstudentd/build/partial.rdb |binary mstudentd-1.1.1/mstudentd/man/kldstudent.Rd | 10 mstudentd-1.1.1/mstudentd/man/plotmtd.Rd | 8 mstudentd-1.1.1/mstudentd/man/rmtd.Rd | 2 mstudentd-1.1.1/mstudentd/tests |only 14 files changed, 225 insertions(+), 472 deletions(-)
Title: Topographic and Geologic Mapping
Description: Set of routines for making map projections (forward and inverse), topographic maps, perspective plots, geological maps, geological map symbols, geological databases, interactive plotting and selection of focus regions.
Author: Jonathan M. Lees [aut, cre]
Maintainer: Jonathan M. Lees <jonathan.lees@unc.edu>
Diff between GEOmap versions 2.5-5 dated 2023-09-01 and 2.5-11 dated 2024-07-09
DESCRIPTION | 8 +-- MD5 | 100 ++++++++++++++++++++++++----------------------- R/DUMPLOC.R | 17 ++++--- R/Ellipsoidal.Distance.R | 4 - R/ExplodeSymbols.R | 61 +++++++++++++++++----------- R/GEOTOPO.R | 6 +- R/GEOmap.cat.R | 2 R/GEOmap.limit.R | 4 - R/GLOB.XY.R | 2 R/GlobeView.R | 2 R/KINOUT.R | 2 R/LLsmallcircMap.R |only R/LOCPOLIMAP.R | 6 +- R/LandSeaCol.R | 2 R/NoOverlap.R | 35 ++++++++-------- R/SELGEOmap.R | 9 ++-- R/XSECDEMg.R | 12 ++--- R/XSECEQ.R | 23 +++++----- R/XSECwin.R | 4 - R/XY.GLOB.R | 2 R/addLLXY.R | 2 R/addTIX.R | 4 - R/antipolygon.R | 46 +++++++++++++++++---- R/fixCoastwrap.R | 14 +++--- R/geoLEGEND.R | 2 R/insertNA.R | 4 - R/inside.R | 4 - R/jarea.R |only R/lambert.cc.ll.R | 10 ++-- R/lambert.cc.xy.R | 6 +- R/lambert.ea.ll.R | 10 ++-- R/lambert.ea.xy.R | 6 +- R/locworld.R | 2 R/mapTeleSeis.R | 10 ++-- R/maps2GEOmap.R | 3 - R/niceLLtix.R | 6 +- R/plotGEOmap.R | 12 ++--- R/plotGEOmapXY.R | 34 +++++++-------- R/plotworldmap.R | 2 R/polyintern.R | 2 R/printGEOinfo.R | 4 + R/printGEOmap.R | 6 +- R/projtype.R | 24 +++++------ R/rose.R | 8 +++ R/setMarkup.R | 8 +-- R/sqrTICXY.R | 6 +- R/stereo.sphr.ll.R | 2 R/stereo.sphr.xy.R | 4 - R/subsetTOPO.R | 4 - R/targetLL.R | 12 +++-- R/utmbox.R | 2 man/LLsmallcircMap.Rd |only man/jarea.Rd |only 53 files changed, 314 insertions(+), 246 deletions(-)
Title: Access and Harmonize Childfree Demographic Data
Description: Reads demographic data from a variety of public data sources, extracting and harmonizing variables useful for the study of childfree individuals. The identification of childfree individuals and those with other family statuses uses Neal & Neal's (2024) "A Framework for Studying Adults who Neither have Nor Want Children" <doi:10.1177/10664807231198869>; A pre-print is available at <doi:10.31234/osf.io/fa89m>.
Author: Zachary Neal [aut, cre] ,
Jennifer Watling Neal [aut]
Maintainer: Zachary Neal <zpneal@msu.edu>
Diff between childfree versions 0.0.1 dated 2024-04-05 and 0.0.2 dated 2024-07-09
DESCRIPTION | 8 MD5 | 40 ++-- NEWS.md | 5 R/childfree.R | 4 R/dhs.R | 129 ++++++++------ R/nsfg.R | 428 ++++++++++++++++++++++++++++++++++++++++++++++-- R/soss.R | 17 + README.md | 9 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/childfree.Rmd | 4 inst/doc/childfree.html | 73 +++----- inst/doc/codebooks.Rmd | 51 +++-- inst/doc/codebooks.html | 147 ++++++++++------ man/childfree.Rd | 22 ++ man/dhs.Rd | 33 +-- man/figures/logo.png |binary man/nsfg.Rd | 7 man/soss.Rd | 6 vignettes/childfree.Rmd | 4 vignettes/codebooks.Rmd | 51 +++-- 21 files changed, 781 insertions(+), 257 deletions(-)
Title: Sorted L1 Penalized Estimation
Description: Efficient implementations for Sorted L-One Penalized Estimation
(SLOPE): generalized linear models regularized with the sorted L1-norm
(Bogdan et al. 2015). Supported models include
ordinary least-squares regression, binomial regression, multinomial
regression, and Poisson regression. Both dense and sparse predictor
matrices are supported. In addition, the package features predictor
screening rules that enable fast and efficient solutions to high-dimensional
problems.
Author: Johan Larsson [aut, cre] ,
Jonas Wallin [aut] ,
Malgorzata Bogdan [aut],
Ewout van den Berg [aut],
Chiara Sabatti [aut],
Emmanuel Candes [aut],
Evan Patterson [aut],
Weijie Su [aut],
Jakub Kala [aut],
Krystyna Grzesiak [aut],
Michal Burdukiewicz [aut [...truncated...]
Maintainer: Johan Larsson <johanlarsson@outlook.com>
Diff between SLOPE versions 0.5.0 dated 2022-06-09 and 0.5.1 dated 2024-07-09
SLOPE-0.5.0/SLOPE/build/partial.rdb |only SLOPE-0.5.1/SLOPE/DESCRIPTION | 28 SLOPE-0.5.1/SLOPE/MD5 | 73 - SLOPE-0.5.1/SLOPE/NEWS.md | 157 +- SLOPE-0.5.1/SLOPE/R/SLOPE.R | 9 SLOPE-0.5.1/SLOPE/R/predict.R | 2 SLOPE-0.5.1/SLOPE/R/sortedL1Prox.R | 2 SLOPE-0.5.1/SLOPE/R/utils.R | 13 SLOPE-0.5.1/SLOPE/README.md | 2 SLOPE-0.5.1/SLOPE/build/vignette.rds |binary SLOPE-0.5.1/SLOPE/inst/CITATION | 62 - SLOPE-0.5.1/SLOPE/inst/WORDLIST | 4 SLOPE-0.5.1/SLOPE/inst/doc/introduction.R | 6 SLOPE-0.5.1/SLOPE/inst/doc/introduction.Rmd | 2 SLOPE-0.5.1/SLOPE/inst/doc/introduction.html | 583 +++++++--- SLOPE-0.5.1/SLOPE/inst/doc/prox-algs.R | 4 SLOPE-0.5.1/SLOPE/inst/doc/prox-algs.html | 423 +++++-- SLOPE-0.5.1/SLOPE/man/SLOPE-package.Rd | 5 SLOPE-0.5.1/SLOPE/man/SLOPE.Rd | 7 SLOPE-0.5.1/SLOPE/man/sortedL1Prox.Rd | 2 SLOPE-0.5.1/SLOPE/src/Makevars | 1 SLOPE-0.5.1/SLOPE/src/SLOPE.h | 22 SLOPE-0.5.1/SLOPE/src/families/binomial.h | 2 SLOPE-0.5.1/SLOPE/src/families/family.h | 4 SLOPE-0.5.1/SLOPE/src/families/gaussian.h | 2 SLOPE-0.5.1/SLOPE/src/families/multinomial.h | 2 SLOPE-0.5.1/SLOPE/src/families/poisson.h | 2 SLOPE-0.5.1/SLOPE/src/prox.cpp | 19 SLOPE-0.5.1/SLOPE/src/standardize.cpp | 4 SLOPE-0.5.1/SLOPE/tests/testthat/_snaps/diagnostics/plotdiagnostics-in-test.svg | 14 SLOPE-0.5.1/SLOPE/tests/testthat/_snaps/plotting/binom-plot-trainedslope-in-test.svg | 12 SLOPE-0.5.1/SLOPE/tests/testthat/_snaps/plotting/plot-slope-in-test.svg | 110 - SLOPE-0.5.1/SLOPE/tests/testthat/_snaps/plotting/plot-slope-multinomial-in-test.svg | 80 - SLOPE-0.5.1/SLOPE/tests/testthat/_snaps/plotting/plot-slope-parameters-in-test.svg | 118 +- SLOPE-0.5.1/SLOPE/tests/testthat/_snaps/plotting/plot-trainedslope-in-test.svg | 16 SLOPE-0.5.1/SLOPE/tests/testthat/_snaps/plotting/q-plot-trainedslope-in-test.svg | 20 SLOPE-0.5.1/SLOPE/vignettes/SLOPE.bib | 45 SLOPE-0.5.1/SLOPE/vignettes/introduction.Rmd | 2 38 files changed, 1165 insertions(+), 694 deletions(-)
Title: Quick and Essential 'R' Tricks for Better Scripts
Description: The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to improve your scripts. Improve the quality and reproducibility of 'R' scripts.
Author: Obinna Obianom [aut, cre],
Brice Richard [aut]
Maintainer: Obinna Obianom <idonshayo@gmail.com>
Diff between quickcode versions 0.8 dated 2024-04-06 and 0.9 dated 2024-07-09
quickcode-0.8/quickcode/man/add_key.Rd |only quickcode-0.8/quickcode/man/not.empty.Rd |only quickcode-0.9/quickcode/DESCRIPTION | 8 quickcode-0.9/quickcode/MD5 | 75 +++++--- quickcode-0.9/quickcode/NAMESPACE | 14 + quickcode-0.9/quickcode/NEWS.md | 10 + quickcode-0.9/quickcode/R/aaa.R | 2 quickcode-0.9/quickcode/R/add_key.R | 60 ++++++ quickcode-0.9/quickcode/R/clean.R | 30 +-- quickcode-0.9/quickcode/R/cybersec.R |only quickcode-0.9/quickcode/R/dat2week.R |only quickcode-0.9/quickcode/R/data_pop_filter.R | 17 + quickcode-0.9/quickcode/R/decimals.R |only quickcode-0.9/quickcode/R/duplicate.R | 2 quickcode-0.9/quickcode/R/filename.R | 26 ++ quickcode-0.9/quickcode/R/getDate.R |only quickcode-0.9/quickcode/R/getMyIP.R |only quickcode-0.9/quickcode/R/getdist.R |only quickcode-0.9/quickcode/R/github.R | 2 quickcode-0.9/quickcode/R/libraryAll.R | 15 + quickcode-0.9/quickcode/R/mutate_filter.R |only quickcode-0.9/quickcode/R/nin.R | 4 quickcode-0.9/quickcode/R/not.empty.R | 7 quickcode-0.9/quickcode/R/randomImage.R | 90 ++++++---- quickcode-0.9/quickcode/R/sort.R |only quickcode-0.9/quickcode/R/supervariable.R | 60 +++--- quickcode-0.9/quickcode/R/uniquelen.R |only quickcode-0.9/quickcode/R/zsore.R |only quickcode-0.9/quickcode/README.md | 4 quickcode-0.9/quickcode/build/vignette.rds |binary quickcode-0.9/quickcode/inst/doc/add_today_date_to_filenames_quickcode.R |only quickcode-0.9/quickcode/inst/doc/add_today_date_to_filenames_quickcode.Rmd |only quickcode-0.9/quickcode/inst/doc/add_today_date_to_filenames_quickcode.html |only quickcode-0.9/quickcode/inst/doc/quickcode_r_introduction.Rmd | 8 quickcode-0.9/quickcode/inst/doc/quickcode_r_introduction.html | 19 +- quickcode-0.9/quickcode/man/addkey.Rd |only quickcode-0.9/quickcode/man/ai.duplicate.Rd | 2 quickcode-0.9/quickcode/man/cybersecurity.Rd |only quickcode-0.9/quickcode/man/date-topic.Rd |only quickcode-0.9/quickcode/man/distribution_check.Rd | 12 + quickcode-0.9/quickcode/man/empty.Rd |only quickcode-0.9/quickcode/man/fAddDate.Rd | 13 + quickcode-0.9/quickcode/man/genRandImg.Rd | 19 +- quickcode-0.9/quickcode/man/libraryAll.Rd | 18 +- quickcode-0.9/quickcode/man/mutate_filter.Rd |only quickcode-0.9/quickcode/man/ndecimal.Rd |only quickcode-0.9/quickcode/man/sort_length.Rd |only quickcode-0.9/quickcode/man/unique_len.Rd |only quickcode-0.9/quickcode/man/zscore.Rd |only quickcode-0.9/quickcode/vignettes/add_today_date_to_filenames_quickcode.Rmd |only quickcode-0.9/quickcode/vignettes/quickcode_r_introduction.Rmd | 8 51 files changed, 377 insertions(+), 148 deletions(-)
Title: An Interactive Introduction to Life Data Analysis
Description: An interactive introduction to Life Data Analysis that depends on 'WeibullR'
by David Silkworth and Jurgen Symynck (2022) <https://CRAN.R-project.org/package=WeibullR>,
a R package for Weibull Analysis, and 'learnr' by Garrick Aden-Buie et al. (2023)
<https://CRAN.R-project.org/package=learnr>, a framework for building interactive learning
modules in R.
Author: Paul Govan [aut, cre, cph]
Maintainer: Paul Govan <paul.govan2@gmail.com>
Diff between WeibullR.learnr versions 0.1.1 dated 2023-06-06 and 0.1.3 dated 2024-07-09
WeibullR.learnr-0.1.1/WeibullR.learnr/inst/learnr |only WeibullR.learnr-0.1.3/WeibullR.learnr/DESCRIPTION | 17 ++-- WeibullR.learnr-0.1.3/WeibullR.learnr/MD5 | 53 +++++++------- WeibullR.learnr-0.1.3/WeibullR.learnr/NAMESPACE | 7 + WeibullR.learnr-0.1.3/WeibullR.learnr/NEWS.md |only WeibullR.learnr-0.1.3/WeibullR.learnr/R/RAMR.learnr.R |only WeibullR.learnr-0.1.3/WeibullR.learnr/R/WeibullR.learnr.R | 2 WeibullR.learnr-0.1.3/WeibullR.learnr/R/availability.R |only WeibullR.learnr-0.1.3/WeibullR.learnr/R/lambda.R |only WeibullR.learnr-0.1.3/WeibullR.learnr/R/mtbf.R |only WeibullR.learnr-0.1.3/WeibullR.learnr/R/mttf.R |only WeibullR.learnr-0.1.3/WeibullR.learnr/R/reliability.R |only WeibullR.learnr-0.1.3/WeibullR.learnr/R/serviceability.R |only WeibullR.learnr-0.1.3/WeibullR.learnr/README.md |only WeibullR.learnr-0.1.3/WeibullR.learnr/inst/CITATION |only WeibullR.learnr-0.1.3/WeibullR.learnr/inst/paper |only WeibullR.learnr-0.1.3/WeibullR.learnr/inst/tutorials |only WeibullR.learnr-0.1.3/WeibullR.learnr/man/RAMR.learnr.Rd |only WeibullR.learnr-0.1.3/WeibullR.learnr/man/avail.Rd |only WeibullR.learnr-0.1.3/WeibullR.learnr/man/fr.Rd |only WeibullR.learnr-0.1.3/WeibullR.learnr/man/mtbf.Rd |only WeibullR.learnr-0.1.3/WeibullR.learnr/man/mttf.Rd |only WeibullR.learnr-0.1.3/WeibullR.learnr/man/rel.Rd |only WeibullR.learnr-0.1.3/WeibullR.learnr/man/serv.Rd |only 24 files changed, 44 insertions(+), 35 deletions(-)
More information about WeibullR.learnr at CRAN
Permanent link
Title: Open Perimetry Interface
Description: Implementation of the Open Perimetry Interface (OPI) for simulating and controlling visual field machines using R. The OPI is a standard for interfacing with visual field testing machines (perimeters) first started as an open source project with support of Haag-Streit in 2010. It specifies basic functions that allow many visual field tests to be constructed. As of February 2022 it is fully implemented on the Haag-Streit Octopus 900 and 'CrewT ImoVifa' ('Topcon Tempo') with partial implementations on the Centervue Compass, Kowa AP 7000 and Android phones. It also has a cousin: the R package 'visualFields', which has tools for analysing and manipulating visual field data.
Author: Andrew Turpin [cre, aut, cph] ,
David Lawson [ctb, cph],
Ivan Marin-Franch [ctb, cph],
Matthias Muller [ctb],
Jonathan Denniss [ctb, cph],
Astrid Zeman [ctb],
Giovanni Montesano [ctb]
Maintainer: Andrew Turpin <andrew.turpin@lei.org.au>
Diff between OPI versions 3.0.1 dated 2024-07-03 and 3.0.2 dated 2024-07-09
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 3 +++ R/ImoVifa.r | 30 +++++++++++++++++++----------- man/opiPresent_for_ImoVifa.Rd | 23 +++++++++++++---------- man/opiQueryDevice_for_ImoVifa.Rd | 6 ++++++ 6 files changed, 50 insertions(+), 30 deletions(-)
Title: Estimate Bayesian Multilevel Models for Compositional Data
Description: Implement Bayesian Multilevel Modelling for compositional data
in a multilevel framework. Compute multilevel compositional data and
Isometric log ratio (ILR) at between and within-person levels,
fit Bayesian multilevel models for compositional predictors and outcomes,
and run post-hoc analyses such as isotemporal substitution models.
Author: Flora Le [aut, cre] ,
Joshua F. Wiley [aut]
Maintainer: Flora Le <13florale@gmail.com>
Diff between multilevelcoda versions 1.3.0.1 dated 2024-06-30 and 1.3.0.2 dated 2024-07-09
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NAMESPACE | 2 +- R/substitution-helpers.R | 26 ++++++++++---------------- man/build.rg.Rd | 5 +---- 5 files changed, 20 insertions(+), 29 deletions(-)
More information about multilevelcoda at CRAN
Permanent link
Title: Read and Write 'jamovi' Files ('.omv')
Description: The free and open a statistical spreadsheet 'jamovi'
(<https://www.jamovi.org>) aims to make statistical analyses easy and
intuitive. 'jamovi' produces syntax that can directly be used in R (in
connection with the R-package 'jmv'). Having import / export routines for
the data files 'jamovi' produces ('.omv') permits an easy transfer of
data and analyses between 'jamovi' and R.
Author: Sebastian Jentschke [aut, cre, cph]
Maintainer: Sebastian Jentschke <sebastian.jentschke@uib.no>
Diff between jmvReadWrite versions 0.4.6 dated 2024-05-22 and 0.4.7 dated 2024-07-09
DESCRIPTION | 12 ++-- MD5 | 21 ++++---- NAMESPACE | 1 NEWS.md | 17 +++++- R/read_omv.R | 2 R/transform_vars_omv.R |only R/write_omv.R | 3 - README.md | 23 +-------- build/vignette.rds |binary inst/CITATION | 2 inst/doc/jmvReadWrite.html | 78 +++++++++++++++---------------- man/transform_vars_omv.Rd |only tests/testthat/test-transform_vars_omv.R |only 13 files changed, 81 insertions(+), 78 deletions(-)
Title: Group Sequential Design
Description: Derives group sequential clinical trial designs and describes
their properties. Particular focus on time-to-event, binary, and
continuous outcomes. Largely based on methods described in
Jennison, Christopher and Turnbull, Bruce W., 2000,
"Group Sequential Methods with Applications to Clinical Trials"
ISBN: 0-8493-0316-8.
Author: Keaven Anderson [aut, cre]
Maintainer: Keaven Anderson <keaven_anderson@merck.com>
Diff between gsDesign versions 3.6.2 dated 2024-04-09 and 3.6.3 dated 2024-07-09
DESCRIPTION | 12 MD5 | 51 NAMESPACE | 3 NEWS.md | 20 R/gsMethods.R | 2 R/gsSurv.R | 3 R/sfXG.R |only build/vignette.rds |binary inst/doc/ConditionalErrorSpending.R |only inst/doc/ConditionalErrorSpending.Rmd |only inst/doc/ConditionalErrorSpending.html |only inst/doc/GentleIntroductionToGSD.Rmd | 4 inst/doc/GentleIntroductionToGSD.html | 822 ++---- inst/doc/PoissonMixtureModel.html | 106 inst/doc/VaccineEfficacy.R | 6 inst/doc/VaccineEfficacy.Rmd | 20 inst/doc/VaccineEfficacy.html | 1282 ++++------ inst/doc/binomialSPRTExample.Rmd | 11 inst/doc/binomialSPRTExample.html | 2014 +++-------------- inst/doc/gsSurvBasicExamples.html | 318 +- inst/doc/nNormal.html | 2 man/gsBoundSummary.Rd | 2 man/sfXG.Rd |only tests/testthat/test-independent-test-gsBinomialExact.R | 78 tests/testthat/test-independent-test-gsSurvCalendar.R |only vignettes/ConditionalErrorSpending.Rmd |only vignettes/GentleIntroductionToGSD.Rmd | 4 vignettes/VaccineEfficacy.Rmd | 20 vignettes/binomialSPRTExample.Rmd | 11 vignettes/gsDesign.bib | 39 30 files changed, 1729 insertions(+), 3101 deletions(-)
Title: Procedures for Gaussian and Non Gaussian Geostatistical (Large)
Data Analysis
Description: Functions for Gaussian and Non Gaussian (bivariate) spatial and spatio-temporal data analysis are provided for a) (fast) simulation of random fields, b) inference for random fields using standard likelihood and a likelihood approximation method called weighted composite likelihood based on pairs and b) prediction using (local) best linear unbiased prediction. Weighted composite likelihood can be very efficient for estimating massive datasets. Both regression and spatial (temporal) dependence analysis can be jointly performed. Flexible covariance models for spatial and spatial-temporal data on Euclidean domains and spheres are provided. There are also many useful functions for plotting and performing diagnostic analysis. Different non Gaussian random fields can be considered in the analysis. Among them, random fields with marginal distributions such as Skew-Gaussian, Student-t, Tukey-h, Sin-Arcsin, Two-piece, Weibull, Gamma, Log-Gaussian, Binomial, Negative Binomial and Poisson. Se [...truncated...]
Author: Moreno Bevilacqua [aut, cre] ,
Victor Morales-Onate [aut] ,
Christian Caamano-Carrillo [aut]
Maintainer: Moreno Bevilacqua <moreno.bevilacqua89@gmail.com>
Diff between GeoModels versions 2.0.3 dated 2024-06-07 and 2.0.4 dated 2024-07-09
DESCRIPTION | 8 - MD5 | 16 +-- R/GeoCompositeLik2.R | 24 ++++- R/GeoSim.r | 2 R/Utility.r | 10 +- man/GeoCovmatrix.Rd | 3 src/CorrelationFunction.c | 198 ++++++++++++++++++++++++++++++++++++++++++++-- src/Distributions.c | 106 +++++++++++++++++++++++- src/header.h | 8 + 9 files changed, 346 insertions(+), 29 deletions(-)
Title: 'Burgle': Stealing the Necessary Parts of Model Objects
Description: Provides a way to reduce model objects to necessary parts, making them easier to work with, store, share and simulate multiple values for new responses while allowing for parameter uncertainty.
Author: Paul R. Gunsalus [aut, cre] ,
Jarrod E. Dalton [aut]
Maintainer: Paul R. Gunsalus <gunsalp@ccf.org>
Diff between burgle versions 0.1.0 dated 2024-05-15 and 0.1.1 dated 2024-07-09
burgle-0.1.0/burgle/R/prep_burgle.R |only burgle-0.1.1/burgle/DESCRIPTION | 8 burgle-0.1.1/burgle/MD5 | 24 +- burgle-0.1.1/burgle/NAMESPACE | 2 burgle-0.1.1/burgle/NEWS.md | 11 + burgle-0.1.1/burgle/R/burgle.R | 26 ++ burgle-0.1.1/burgle/R/burgle_CSC.R |only burgle-0.1.1/burgle/R/burgle_flexsurv.R | 32 ++- burgle-0.1.1/burgle/R/burgle_multinom.R |only burgle-0.1.1/burgle/R/burgle_survival.R | 231 ++++++++++++++++------ burgle-0.1.1/burgle/R/predict_burgle.R | 307 ------------------------------ burgle-0.1.1/burgle/R/utils.R |only burgle-0.1.1/burgle/README.md | 15 - burgle-0.1.1/burgle/man/burgle_.Rd | 13 - burgle-0.1.1/burgle/man/predict_burgle.Rd | 72 ++++--- 15 files changed, 319 insertions(+), 422 deletions(-)
Title: Define and Work with Parameter Spaces for Complex Algorithms
Description: Define parameter spaces, constraints and
dependencies for arbitrary algorithms, to program on such spaces. Also
includes statistical designs and random samplers. Objects are
implemented as 'R6' classes.
Author: Michel Lang [aut] ,
Bernd Bischl [aut] ,
Jakob Richter [aut] ,
Xudong Sun [aut] ,
Martin Binder [aut, cre],
Marc Becker [ctb]
Maintainer: Martin Binder <mlr.developer@mb706.com>
Diff between paradox versions 1.0.0 dated 2024-06-11 and 1.0.1 dated 2024-07-09
DESCRIPTION | 8 MD5 | 34 NEWS.md | 4 R/Domain.R | 63 - R/Domain_methods.R | 28 R/ParamDbl.R | 2 R/ParamFct.R | 2 R/ParamInt.R | 12 R/ParamLgl.R | 2 R/ParamSet.R | 202 +++-- R/ParamSetCollection.R | 125 ++- R/ParamUty.R | 2 R/helper.R | 12 build/vignette.rds |binary inst/doc/indepth.html | 1801 ++++++++++++++++++++++++++++------------------ man/ParamSet.Rd | 24 man/ParamSetCollection.Rd | 6 man/domain_check.Rd | 14 18 files changed, 1475 insertions(+), 866 deletions(-)
Title: Mixed Integer Evolution Strategies
Description: Evolutionary black box optimization algorithms building on the
'bbotk' package. 'miesmuschel' offers both ready-to-use optimization
algorithms, as well as their fundamental building blocks that can be used to
manually construct specialized optimization loops. The Mixed Integer Evolution
Strategies as described by Li et al. (2013) <doi:10.1162/EVCO_a_00059> can be
implemented, as well as the multi-objective optimization algorithms NSGA-II
by Deb, Pratap, Agarwal, and Meyarivan (2002) <doi:10.1109/4235.996017>.
Author: Martin Binder [aut, cre],
Lennart Schneider [ctb] ,
Susanne Dandl [ctb] ,
Andreas Hofheinz [ctb]
Maintainer: Martin Binder <mlr.developer@mb706.com>
Diff between miesmuschel versions 0.0.4-1 dated 2024-06-07 and 0.0.4-2 dated 2024-07-09
DESCRIPTION | 8 ++-- MD5 | 52 ++++++++++++++--------------- NEWS.md | 4 ++ R/OptimizerMies.R | 2 - R/ParamSetShadow.R | 2 - inst/tinytest/test_mies_filter_offspring.R | 1 man/OptimInstanceMultiCrit.Rd | 2 - man/OptimInstanceSingleCrit.Rd | 2 - man/Optimizer.Rd | 2 - man/OptimizerMies.Rd | 20 +++++------ man/ParamSetShadow.Rd | 5 ++ man/TuningInstanceMultiCrit.Rd | 2 - man/TuningInstanceSingleCrit.Rd | 2 - man/mies_aggregate_generations.Rd | 4 +- man/mies_evaluate_offspring.Rd | 4 +- man/mies_filter_offspring.Rd | 2 - man/mies_generate_offspring.Rd | 2 - man/mies_generation.Rd | 6 +-- man/mies_get_fitnesses.Rd | 4 +- man/mies_get_generation_results.Rd | 6 +-- man/mies_init_population.Rd | 8 ++-- man/mies_prime_operators.Rd | 2 - man/mies_select_from_archive.Rd | 4 +- man/mies_step_fidelity.Rd | 2 - man/mies_survival_comma.Rd | 2 - man/mies_survival_plus.Rd | 2 - man/mut.Rd | 5 +- 27 files changed, 82 insertions(+), 75 deletions(-)
Title: Utilities for Interacting with the 'CTX' APIs
Description: Access chemical, hazard, bioactivity, and exposure data from the
Computational Toxicology and Exposure ('CTX') APIs
<https://api-ccte.epa.gov/docs/>. 'ccdR' was developed to streamline the
process of accessing the information available through the 'CTX' APIs
without requiring prior knowledge of how to use APIs. Most data is also
available on the CompTox Chemical Dashboard ('CCD')
<https://comptox.epa.gov/dashboard/> and other resources found at the
EPA Computational Toxicology and Exposure Online Resources
<https://www.epa.gov/comptox-tools>.
Author: Paul Kruse [aut, cre] ,
Caroline Ring [aut] ,
Madison Feshuk [ctb] ,
Carter Thunes [ctb],
Jason Brown [ctb]
Maintainer: Paul Kruse <kruse.paul@epa.gov>
Diff between ccdR versions 1.0.0 dated 2024-03-29 and 1.1.0 dated 2024-07-09
ccdR-1.0.0/ccdR/R/register_ccte.R |only ccdR-1.0.0/ccdR/man/register_ccte.Rd |only ccdR-1.0.0/ccdR/tests/testthat/chemical-batch/chemical/file/image/search/by-dtxcid/DTXCID30182-44e992.R |only ccdR-1.0.0/ccdR/tests/testthat/chemical-batch/chemical/file/image/search/by-dtxsid-aebbc6.R |only ccdR-1.0.0/ccdR/tests/testthat/chemical-batch/chemical/search/equal |only ccdR-1.0.0/ccdR/tests/testthat/chemical/chemical/detail/search/by-dtxsid-9e51f1-3d4f3a-POST.json |only ccdR-1.0.0/ccdR/tests/testthat/chemical/chemical/file/image/search/by-dtxcid/DTXCID30182-44e992.R |only ccdR-1.0.0/ccdR/tests/testthat/chemical/chemical/file/image/search/by-dtxsid-aebbc6.R |only ccdR-1.0.0/ccdR/vignettes/Pictures/CCTE_API_Key_authentication.png |only ccdR-1.0.0/ccdR/vignettes/Pictures/CCTE_Chemical_API_endpoints.png |only ccdR-1.1.0/ccdR/DESCRIPTION | 26 ccdR-1.1.0/ccdR/MD5 | 432 - ccdR-1.1.0/ccdR/NAMESPACE | 25 ccdR-1.1.0/ccdR/NEWS.md | 93 ccdR-1.1.0/ccdR/R/attach.R | 26 ccdR-1.1.0/ccdR/R/bioactivity-APIs-batch.R | 18 ccdR-1.1.0/ccdR/R/bioactivity-APIs.R | 38 ccdR-1.1.0/ccdR/R/ccdr_options.R | 12 ccdR-1.1.0/ccdR/R/chemical-APIs-batch.R | 383 - ccdR-1.1.0/ccdR/R/chemical-APIs.R | 311 ccdR-1.1.0/ccdR/R/data.R | 8 ccdR-1.1.0/ccdR/R/exposure-APIs-batch.R |only ccdR-1.1.0/ccdR/R/exposure-APIs.R | 92 ccdR-1.1.0/ccdR/R/hazard-APIs-batch.R | 70 ccdR-1.1.0/ccdR/R/hazard-APIs.R | 57 ccdR-1.1.0/ccdR/R/register_ctx.R |only ccdR-1.1.0/ccdR/README.md | 23 ccdR-1.1.0/ccdR/build/vignette.rds |binary ccdR-1.1.0/ccdR/data/exposure_api_server.rda |only ccdR-1.1.0/ccdR/inst/doc/Bioactivity.R | 89 ccdR-1.1.0/ccdR/inst/doc/Bioactivity.Rmd | 155 ccdR-1.1.0/ccdR/inst/doc/Bioactivity.html | 2877 ++++++++ ccdR-1.1.0/ccdR/inst/doc/Chemical.R | 21 ccdR-1.1.0/ccdR/inst/doc/Chemical.Rmd | 23 ccdR-1.1.0/ccdR/inst/doc/Chemical.html | 1374 ++-- ccdR-1.1.0/ccdR/inst/doc/Exposure.R |only ccdR-1.1.0/ccdR/inst/doc/Exposure.Rmd |only ccdR-1.1.0/ccdR/inst/doc/Exposure.html |only ccdR-1.1.0/ccdR/inst/doc/Hazard.R | 8 ccdR-1.1.0/ccdR/inst/doc/Hazard.Rmd | 18 ccdR-1.1.0/ccdR/inst/doc/Hazard.html | 1514 ++-- ccdR-1.1.0/ccdR/inst/doc/Introduction.R | 40 ccdR-1.1.0/ccdR/inst/doc/Introduction.Rmd | 46 ccdR-1.1.0/ccdR/inst/doc/Introduction.html | 346 - ccdR-1.1.0/ccdR/inst/httptest/request.R | 4 ccdR-1.1.0/ccdR/man/ccdr_options.Rd | 12 ccdR-1.1.0/ccdR/man/chemical_contains.Rd | 8 ccdR-1.1.0/ccdR/man/chemical_contains_batch.Rd | 8 ccdR-1.1.0/ccdR/man/chemical_equal.Rd | 2 ccdR-1.1.0/ccdR/man/chemical_equal_batch.Rd | 4 ccdR-1.1.0/ccdR/man/chemical_starts_with.Rd | 11 ccdR-1.1.0/ccdR/man/chemical_starts_with_batch.Rd | 8 ccdR-1.1.0/ccdR/man/exposure_api_server.Rd |only ccdR-1.1.0/ccdR/man/get_all_assays.Rd | 2 ccdR-1.1.0/ccdR/man/get_all_public_chemical_lists.Rd | 4 ccdR-1.1.0/ccdR/man/get_annotation_by_aeid.Rd | 2 ccdR-1.1.0/ccdR/man/get_annotation_by_aeid_batch.Rd | 2 ccdR-1.1.0/ccdR/man/get_bioactivity_details.Rd | 2 ccdR-1.1.0/ccdR/man/get_bioactivity_details_batch.Rd | 2 ccdR-1.1.0/ccdR/man/get_bioactivity_endpoint_status.Rd |only ccdR-1.1.0/ccdR/man/get_bioactivity_summary.Rd | 2 ccdR-1.1.0/ccdR/man/get_bioactivity_summary_batch.Rd | 2 ccdR-1.1.0/ccdR/man/get_cancer_hazard.Rd | 2 ccdR-1.1.0/ccdR/man/get_cancer_hazard_batch.Rd | 2 ccdR-1.1.0/ccdR/man/get_chem_info.Rd | 2 ccdR-1.1.0/ccdR/man/get_chem_info_batch.Rd | 2 ccdR-1.1.0/ccdR/man/get_chemical_by_property_range.Rd | 2 ccdR-1.1.0/ccdR/man/get_chemical_by_property_range_batch.Rd | 2 ccdR-1.1.0/ccdR/man/get_chemical_details.Rd | 10 ccdR-1.1.0/ccdR/man/get_chemical_details_batch.Rd | 8 ccdR-1.1.0/ccdR/man/get_chemical_endpoint_status.Rd |only ccdR-1.1.0/ccdR/man/get_chemical_image.Rd | 5 ccdR-1.1.0/ccdR/man/get_chemical_image_batch.Rd | 5 ccdR-1.1.0/ccdR/man/get_chemical_lists_by_type.Rd | 2 ccdR-1.1.0/ccdR/man/get_chemical_lists_by_type_batch.Rd | 2 ccdR-1.1.0/ccdR/man/get_chemical_mol.Rd | 2 ccdR-1.1.0/ccdR/man/get_chemical_mol_batch.Rd | 2 ccdR-1.1.0/ccdR/man/get_chemical_mrv.Rd | 2 ccdR-1.1.0/ccdR/man/get_chemical_mrv_batch.Rd | 2 ccdR-1.1.0/ccdR/man/get_chemical_synonym.Rd | 2 ccdR-1.1.0/ccdR/man/get_chemical_synonym_batch.Rd | 2 ccdR-1.1.0/ccdR/man/get_chemicals_in_list.Rd | 2 ccdR-1.1.0/ccdR/man/get_chemicals_in_list_batch.Rd | 2 ccdR-1.1.0/ccdR/man/get_ecotox_hazard_by_dtxsid.Rd | 2 ccdR-1.1.0/ccdR/man/get_ecotox_hazard_by_dtxsid_batch.Rd | 2 ccdR-1.1.0/ccdR/man/get_exposure_endpoint_status.Rd |only ccdR-1.1.0/ccdR/man/get_exposure_functional_use.Rd | 8 ccdR-1.1.0/ccdR/man/get_exposure_functional_use_batch.Rd |only ccdR-1.1.0/ccdR/man/get_exposure_functional_use_category.Rd | 8 ccdR-1.1.0/ccdR/man/get_exposure_functional_use_probability.Rd | 8 ccdR-1.1.0/ccdR/man/get_exposure_functional_use_probability_batch.Rd |only ccdR-1.1.0/ccdR/man/get_exposure_list_presence_tags.Rd | 8 ccdR-1.1.0/ccdR/man/get_exposure_list_presence_tags_by_dtxsid.Rd | 8 ccdR-1.1.0/ccdR/man/get_exposure_list_presence_tags_by_dtxsid_batch.Rd |only ccdR-1.1.0/ccdR/man/get_exposure_product_data.Rd | 8 ccdR-1.1.0/ccdR/man/get_exposure_product_data_batch.Rd |only ccdR-1.1.0/ccdR/man/get_exposure_product_data_puc.Rd | 8 ccdR-1.1.0/ccdR/man/get_fate_by_dtxsid.Rd | 2 ccdR-1.1.0/ccdR/man/get_fate_by_dtxsid_batch.Rd | 2 ccdR-1.1.0/ccdR/man/get_genetox_details.Rd | 2 ccdR-1.1.0/ccdR/man/get_genetox_details_batch.Rd | 2 ccdR-1.1.0/ccdR/man/get_genetox_summary.Rd | 2 ccdR-1.1.0/ccdR/man/get_genetox_summary_batch.Rd | 2 ccdR-1.1.0/ccdR/man/get_hazard_by_dtxsid.Rd | 2 ccdR-1.1.0/ccdR/man/get_hazard_by_dtxsid_batch.Rd | 2 ccdR-1.1.0/ccdR/man/get_hazard_endpoint_status.Rd |only ccdR-1.1.0/ccdR/man/get_human_hazard_by_dtxsid.Rd | 2 ccdR-1.1.0/ccdR/man/get_human_hazard_by_dtxsid_batch.Rd | 2 ccdR-1.1.0/ccdR/man/get_inchi.Rd |only ccdR-1.1.0/ccdR/man/get_inchikey.Rd |only ccdR-1.1.0/ccdR/man/get_lists_containing_chemical.Rd | 2 ccdR-1.1.0/ccdR/man/get_lists_containing_chemical_batch.Rd | 2 ccdR-1.1.0/ccdR/man/get_msready_by_dtxcid.Rd | 2 ccdR-1.1.0/ccdR/man/get_msready_by_dtxcid_batch.Rd | 2 ccdR-1.1.0/ccdR/man/get_msready_by_formula.Rd | 2 ccdR-1.1.0/ccdR/man/get_msready_by_formula_batch.Rd | 2 ccdR-1.1.0/ccdR/man/get_msready_by_mass.Rd | 2 ccdR-1.1.0/ccdR/man/get_msready_by_mass_batch.Rd | 2 ccdR-1.1.0/ccdR/man/get_msready_by_mass_with_error_batch.Rd |only ccdR-1.1.0/ccdR/man/get_public_chemical_list_by_name.Rd | 2 ccdR-1.1.0/ccdR/man/get_public_chemical_list_by_name_batch.Rd | 2 ccdR-1.1.0/ccdR/man/get_skin_eye_hazard.Rd | 2 ccdR-1.1.0/ccdR/man/get_skin_eye_hazard_batch.Rd | 2 ccdR-1.1.0/ccdR/man/get_smiles.Rd |only ccdR-1.1.0/ccdR/man/register_ccdr.Rd |only ccdR-1.1.0/ccdR/tests/testthat/IUPAC |only ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/detail/search/by-dtxcid/DTXCID30182-9e51f1.json | 24 ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/detail/search/by-dtxsid-9e51f1-cd40e5-POST.R | 28 ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/detail/search/by-dtxsid-9e51f1-cd40e5-POST.json | 24 ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/fate/search/by-dtxsid-cd40e5-POST.R | 28 ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/fate/search/by-dtxsid-cd40e5-POST.json | 264 ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/file/image/search/by-dtxcid/DTXCID30182-ac797a.R |only ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/file/image/search/by-dtxsid-85b7e8.R |only ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/file/image/search/by-dtxsid/DTXSID7020182.R | 32 ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/file/mol/search/by-dtxsid.R | 32 ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/file/mrv/search/by-dtxsid.R | 32 ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/list/search/by-dtxsid.R | 32 ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/list/search/by-dtxsid/DTXSID7020182.R | 28 ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/list/search/by-dtxsid/DTXSID7020182.json | 3414 +++++----- ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/list/search/by-name-8b6df7.R | 32 ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/list/search/by-name.R | 32 ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/list/search/by-name/BIOSOLDIS2021-8b6df7.R | 45 ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/list/search/by-name/BIOSOLIDS2021.R | 28 ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/list/search/by-name/BIOSOLIDS2021.json | 2 ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/list/search/by-name/DTXSID7020182-8b6df7.R | 32 ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/list/search/by-type.R | 32 ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/list/search/by-type/federal.R | 28 ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/list/search/by-type/federal.json | 574 + ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/msready/search/by-dtxcid.R | 32 ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/msready/search/by-dtxcid/DTXCID30182.R | 26 ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/msready/search/by-formula.R | 30 ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/msready/search/by-formula/CH4.R | 28 ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/msready/search/by-mass-3083de-POST.R |only ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/msready/search/by-mass-8e72d4-POST.json |only ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/msready/search/by-mass-d40255-POST.R |only ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/property/search/by-dtxsid-33d060-POST.json | 832 +- ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/property/search/by-dtxsid-cd40e5-POST.R | 28 ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/property/search/by-dtxsid-cd40e5-POST.json | 452 - ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/search/contain |only ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/search/equal-a5c27e-POST.R |only ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/search/equal-a5c27e-POST.json |only ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/search/equal-b2fb80-POST.json |only ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/search/start-with/DTXSID7020182.R | 28 ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/search/start-with/DTXSID7020182.json | 8 ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/search/start-with/gvfdsr7.R | 32 ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/synonym/search/by-dtxsid.R | 32 ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/synonym/search/by-dtxsid/DTXSID7020182.R | 28 ccdR-1.1.0/ccdR/tests/testthat/chemical-batch/chemical/synonym/search/by-dtxsid/DTXSID7020182.json | 355 - ccdR-1.1.0/ccdR/tests/testthat/chemical/chemical/detail/search/by-dtxcid/DTXCID30182-9e51f1.json | 22 ccdR-1.1.0/ccdR/tests/testthat/chemical/chemical/detail/search/by-dtxsid-9e51f1-67ad88-POST.json |only ccdR-1.1.0/ccdR/tests/testthat/chemical/chemical/detail/search/by-dtxsid-9e51f1.R | 32 ccdR-1.1.0/ccdR/tests/testthat/chemical/chemical/detail/search/by-dtxsid/DTXSID7020182-975bf8.json | 14 ccdR-1.1.0/ccdR/tests/testthat/chemical/chemical/detail/search/by-dtxsid/DTXSID7020182-9e51f1.json | 22 ccdR-1.1.0/ccdR/tests/testthat/chemical/chemical/fate/search/by-dtxsid.R | 32 ccdR-1.1.0/ccdR/tests/testthat/chemical/chemical/fate/search/by-dtxsid/DTXSID7020182.json | 198 ccdR-1.1.0/ccdR/tests/testthat/chemical/chemical/file/image/search/by-dtxcid/DTXCID30182-ac797a.R |only ccdR-1.1.0/ccdR/tests/testthat/chemical/chemical/file/image/search/by-dtxsid-85b7e8.R |only ccdR-1.1.0/ccdR/tests/testthat/chemical/chemical/file/image/search/by-dtxsid/DTXSID7020182.R | 32 ccdR-1.1.0/ccdR/tests/testthat/chemical/chemical/file/mol/search/by-dtxsid.R | 32 ccdR-1.1.0/ccdR/tests/testthat/chemical/chemical/file/mrv/search/by-dtxsid.R | 32 ccdR-1.1.0/ccdR/tests/testthat/chemical/chemical/list.json | 1860 +++-- ccdR-1.1.0/ccdR/tests/testthat/chemical/chemical/list/search/by-dtxsid.R | 32 ccdR-1.1.0/ccdR/tests/testthat/chemical/chemical/list/search/by-dtxsid/DTXSID7020182.json | 3414 +++++----- ccdR-1.1.0/ccdR/tests/testthat/chemical/chemical/list/search/by-name-8b6df7.R | 32 ccdR-1.1.0/ccdR/tests/testthat/chemical/chemical/list/search/by-name.R | 32 ccdR-1.1.0/ccdR/tests/testthat/chemical/chemical/list/search/by-name/Biosolids2021.json | 2 ccdR-1.1.0/ccdR/tests/testthat/chemical/chemical/list/search/by-name/CCL4-8b6df7.json | 4 ccdR-1.1.0/ccdR/tests/testthat/chemical/chemical/list/search/by-name/federal.R | 45 ccdR-1.1.0/ccdR/tests/testthat/chemical/chemical/list/search/by-type.R | 32 ccdR-1.1.0/ccdR/tests/testthat/chemical/chemical/list/search/by-type/federal.json | 574 + 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ccdR-1.1.0/ccdR/tests/testthat/chemical/chemical/synonym/search/by-dtxsid.R | 32 ccdR-1.1.0/ccdR/tests/testthat/chemical/chemical/synonym/search/by-dtxsid/DTXSID7020182.json | 367 - ccdR-1.1.0/ccdR/tests/testthat/exposure |only ccdR-1.1.0/ccdR/tests/testthat/exposure-batch |only ccdR-1.1.0/ccdR/tests/testthat/test-bioactivity-APIs-batch.R | 14 ccdR-1.1.0/ccdR/tests/testthat/test-bioactivity-APIs.R | 12 ccdR-1.1.0/ccdR/tests/testthat/test-chemical-APIs-batch.R | 184 ccdR-1.1.0/ccdR/tests/testthat/test-chemical-APIs.R | 121 ccdR-1.1.0/ccdR/tests/testthat/test-exposure-APIs-batch.R |only ccdR-1.1.0/ccdR/tests/testthat/test-exposure-APIs.R |only ccdR-1.1.0/ccdR/tests/testthat/test-hazard-APIs-batch.R | 64 ccdR-1.1.0/ccdR/tests/testthat/test-hazard-APIs.R | 36 ccdR-1.1.0/ccdR/vignettes/4 |only ccdR-1.1.0/ccdR/vignettes/5 |only ccdR-1.1.0/ccdR/vignettes/Bioactivity.Rmd | 155 ccdR-1.1.0/ccdR/vignettes/Chemical.Rmd | 23 ccdR-1.1.0/ccdR/vignettes/Exposure.Rmd |only ccdR-1.1.0/ccdR/vignettes/Hazard.Rmd | 18 ccdR-1.1.0/ccdR/vignettes/Introduction.Rmd | 46 ccdR-1.1.0/ccdR/vignettes/Pictures/CTX_API_Key_authentication.png |only ccdR-1.1.0/ccdR/vignettes/Pictures/CTX_Chemical_API_endpoints.png |only 222 files changed, 15010 insertions(+), 9933 deletions(-)
Title: Embed 'SWI'-'Prolog'
Description: Interface to 'SWI'-'Prolog', <https://www.swi-prolog.org/>. This package is normally not loaded directly, please refer to package 'rolog' instead. The purpose of this package is to provide the 'Prolog' runtime on systems that do not have a software installation of 'SWI'-'Prolog'.
Author: Matthias Gondan [aut, com, cre] ,
Jan Wielemaker [ctb, cph] ,
European Commission [fnd]
Maintainer: Matthias Gondan <Matthias.Gondan-Rochon@uibk.ac.at>
Diff between rswipl versions 9.3.5.1 dated 2024-05-13 and 9.3.7.2 dated 2024-07-09
rswipl-9.3.5.1/rswipl/src/swipl-devel/src/pl-xterm.h |only rswipl-9.3.5.1/rswipl/tests |only rswipl-9.3.7.2/rswipl/DESCRIPTION | 12 rswipl-9.3.7.2/rswipl/MD5 | 212 +-- rswipl-9.3.7.2/rswipl/NEWS.md | 10 rswipl-9.3.7.2/rswipl/R/RcppExports.R | 4 rswipl-9.3.7.2/rswipl/R/query.R | 54 rswipl-9.3.7.2/rswipl/R/rswipl.R | 21 rswipl-9.3.7.2/rswipl/man/clear.Rd | 7 rswipl-9.3.7.2/rswipl/man/query.Rd | 29 rswipl-9.3.7.2/rswipl/man/submit.Rd | 15 rswipl-9.3.7.2/rswipl/man/swipl.Rd |only rswipl-9.3.7.2/rswipl/src/Makevars | 30 rswipl-9.3.7.2/rswipl/src/Makevars.old |only rswipl-9.3.7.2/rswipl/src/Makevars.win | 3 rswipl-9.3.7.2/rswipl/src/RcppExports.cpp | 13 rswipl-9.3.7.2/rswipl/src/install.libs.R | 2 rswipl-9.3.7.2/rswipl/src/rswipl.cpp | 294 ---- rswipl-9.3.7.2/rswipl/src/swipl-devel/CMAKE.md | 48 rswipl-9.3.7.2/rswipl/src/swipl-devel/CMakeLists.txt | 3 rswipl-9.3.7.2/rswipl/src/swipl-devel/VERSION | 2 rswipl-9.3.7.2/rswipl/src/swipl-devel/bench/run.pl | 2 rswipl-9.3.7.2/rswipl/src/swipl-devel/boot/autoload.pl | 50 rswipl-9.3.7.2/rswipl/src/swipl-devel/boot/init.pl | 4 rswipl-9.3.7.2/rswipl/src/swipl-devel/boot/messages.pl | 2 rswipl-9.3.7.2/rswipl/src/swipl-devel/boot/syspred.pl | 6 rswipl-9.3.7.2/rswipl/src/swipl-devel/boot/toplevel.pl | 7 rswipl-9.3.7.2/rswipl/src/swipl-devel/cmake/BuildType.cmake | 5 rswipl-9.3.7.2/rswipl/src/swipl-devel/cmake/Config.cmake | 3 rswipl-9.3.7.2/rswipl/src/swipl-devel/library/dialect/swi/syspred_options.pl | 8 rswipl-9.3.7.2/rswipl/src/swipl-devel/library/make.pl | 5 rswipl-9.3.7.2/rswipl/src/swipl-devel/library/random.pl | 13 rswipl-9.3.7.2/rswipl/src/swipl-devel/library/sandbox.pl | 1 rswipl-9.3.7.2/rswipl/src/swipl-devel/library/statistics.pl | 14 rswipl-9.3.7.2/rswipl/src/swipl-devel/library/thread.pl | 7 rswipl-9.3.7.2/rswipl/src/swipl-devel/library/threadutil.pl | 218 +-- rswipl-9.3.7.2/rswipl/src/swipl-devel/packages/clib/nonblockio.c | 2 rswipl-9.3.7.2/rswipl/src/swipl-devel/packages/clib/sha1/sha1.c | 4 rswipl-9.3.7.2/rswipl/src/swipl-devel/packages/clib/sha1/sha2.c | 4 rswipl-9.3.7.2/rswipl/src/swipl-devel/packages/clib/socket.pl | 9 rswipl-9.3.7.2/rswipl/src/swipl-devel/packages/cpp/SWI-cpp2.h | 2 rswipl-9.3.7.2/rswipl/src/swipl-devel/packages/http/CMakeLists.txt | 4 rswipl-9.3.7.2/rswipl/src/swipl-devel/packages/http/cgi_stream.c | 17 rswipl-9.3.7.2/rswipl/src/swipl-devel/packages/http/htmx.pl |only rswipl-9.3.7.2/rswipl/src/swipl-devel/packages/http/http.doc | 53 rswipl-9.3.7.2/rswipl/src/swipl-devel/packages/http/http_header.pl | 27 rswipl-9.3.7.2/rswipl/src/swipl-devel/packages/http/http_wrapper.pl | 3 rswipl-9.3.7.2/rswipl/src/swipl-devel/packages/http/mimetype.pl | 1 rswipl-9.3.7.2/rswipl/src/swipl-devel/packages/plunit/plunit.pl | 20 rswipl-9.3.7.2/rswipl/src/swipl-devel/packages/sgml/sgml2pl.c | 3 rswipl-9.3.7.2/rswipl/src/swipl-devel/packages/ssl/ssl4pl.c | 19 rswipl-9.3.7.2/rswipl/src/swipl-devel/packages/ssl/test_ssl.pl | 2 rswipl-9.3.7.2/rswipl/src/swipl-devel/scripts/make-distribution | 6 rswipl-9.3.7.2/rswipl/src/swipl-devel/scripts/swipl-activate | 20 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/ATOMS | 2 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/SWI-Prolog.h | 6 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/Tests/core/test_answer.pl | 29 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/Tests/core/test_term.pl | 8 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/Tests/debug/test_interrupt.pl | 16 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/Tests/tabling/test_trie.pl | 42 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/config.h.cmake | 1 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/os/pl-files.c | 3 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/os/pl-option.c | 1 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/os/pl-prologflag.c | 2 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/os/pl-stream.h | 2 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-arith.c | 27 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-atom.c | 16 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-atom.h | 3 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-attvar.c | 14 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-attvar.h | 27 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-builtin.h | 4 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-comp.c | 4 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-dict.c | 20 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-dict.h | 1 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-error.c | 69 - rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-error.h | 6 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-ext.c | 9 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-fli.c | 669 +++++++--- rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-fli.h | 36 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-gc.c | 2 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-gmp.c | 23 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-incl.h | 28 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-index.c | 22 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-index.h | 8 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-init.c | 83 - rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-inline.h | 2 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-prims.c | 270 ++-- rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-prims.h | 5 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-pro.c | 5 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-qlf.c | 40 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-ressymbol.c | 8 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-segstack.c | 23 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-segstack.h | 18 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-srcfile.c | 36 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-termwalk.c | 4 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-thread.c | 181 +- rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-thread.h | 3 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-trie.c | 36 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-variant.c | 27 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-vmi.c | 88 - rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-wam.c | 25 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-wam.h | 13 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-xterm.c | 65 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/pl-zip.c | 6 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/wasm/bind.html | 5 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/wasm/cbg.html | 8 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/wasm/chat80.html | 14 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/wasm/shell.html | 8 rswipl-9.3.7.2/rswipl/src/swipl-devel/src/wasm/test.html | 19 109 files changed, 2054 insertions(+), 1338 deletions(-)
Title: Convert Various Meta-Analysis Heterogeneity Measures
Description: Published meta-analyses routinely present one of the
measures of heterogeneity introduced in Higgins and Thompson
(2002) <doi:10.1002/sim.1186>. For critiquing articles
it is often better to convert to another of
those measures. Some
conversions are provided here and confidence intervals are also
available.
Author: Michael Dewey [aut, cre]
Maintainer: Michael Dewey <lists@dewey.myzen.co.uk>
Diff between heterometa versions 0.2 dated 2024-03-05 and 0.3 dated 2024-07-09
DESCRIPTION | 12 +++++--- MD5 | 22 ++++++++-------- NEWS | 7 +++++ R/higgins.R | 61 ++++++++++++++++++++++----------------------- R/parchck.R |only R/print.higgins.R | 24 ++++++++++++----- build/heterometa.pdf |binary build/partial.rdb |binary build/stage23.rdb |binary man/dat.higgins02.Rd | 12 ++++---- man/heterometa-internal.Rd |only man/heterometa-package.Rd | 3 ++ man/higgins.Rd | 47 ++++++++++++++++++++++++++++++---- 13 files changed, 123 insertions(+), 65 deletions(-)
Title: Fast Algorithms for Fitting Topic Models and Non-Negative Matrix
Factorizations to Count Data
Description: Implements fast, scalable optimization algorithms for
fitting topic models ("grade of membership" models) and
non-negative matrix factorizations to count data. The methods
exploit the special relationship between the multinomial topic
model (also, "probabilistic latent semantic indexing") and Poisson
non-negative matrix factorization. The package provides tools to
compare, annotate and visualize model fits, including functions to
efficiently create "structure plots" and identify key features in
topics. The 'fastTopics' package is a successor to the
'CountClust' package. For more information, see
<doi:10.48550/arXiv.2105.13440> and
<doi:10.1186/s13059-023-03067-9>. Please also see the GitHub
repository for additional vignettes not included in the package on
CRAN.
Author: Peter Carbonetto [aut, cre],
Kevin Luo [aut],
Kushal Dey [aut],
Joyce Hsiao [ctb],
Abhishek Sarkar [ctb],
Anthony Hung [ctb],
Xihui Lin [ctb],
Paul C. Boutros [ctb],
Minzhe Wang [ctb],
Tracy Ke [ctb],
Eric Weine [ctb],
Matthew Stephens [aut]
Maintainer: Peter Carbonetto <peter.carbonetto@gmail.com>
Diff between fastTopics versions 0.6-186 dated 2024-06-29 and 0.6-192 dated 2024-07-09
fastTopics-0.6-186/fastTopics/inst/doc/single_cell_rnaseq_basic.R |only fastTopics-0.6-186/fastTopics/inst/doc/single_cell_rnaseq_basic.Rmd |only fastTopics-0.6-186/fastTopics/inst/doc/single_cell_rnaseq_basic.html |only fastTopics-0.6-186/fastTopics/vignettes/single_cell_rnaseq_basic.Rmd |only fastTopics-0.6-192/fastTopics/DESCRIPTION | 15 +++--- fastTopics-0.6-192/fastTopics/MD5 | 20 +++------ fastTopics-0.6-192/fastTopics/R/fit_poisson_nmf.R | 2 fastTopics-0.6-192/fastTopics/README.md | 3 - fastTopics-0.6-192/fastTopics/build/vignette.rds |binary fastTopics-0.6-192/fastTopics/data/pbmc_facs.RData |binary fastTopics-0.6-192/fastTopics/inst/doc/relationship.html | 4 - fastTopics-0.6-192/fastTopics/inst/doc/topics_vs_clusters.html | 4 - fastTopics-0.6-192/fastTopics/tests/testthat/test_plots.R | 22 +++++----- 13 files changed, 34 insertions(+), 36 deletions(-)
Title: Airborne LiDAR Data Manipulation and Visualization for Forestry
Applications
Description: Airborne LiDAR (Light Detection and Ranging) interface for data
manipulation and visualization. Read/write 'las' and 'laz' files, computation
of metrics in area based approach, point filtering, artificial point reduction,
classification from geographic data, normalization, individual tree segmentation
and other manipulations.
Author: Jean-Romain Roussel [aut, cre, cph],
David Auty [aut, ctb] ,
Florian De Boissieu [ctb] ,
Andrew Sanchez Meador [ctb] for
segment_snags),
Bourdon Jean-Francois [ctb] for
track_sensor),
Gatziolis Demetrios [ctb] for
track_sensor),
Leon Steinmeier [c [...truncated...]
Maintainer: Jean-Romain Roussel <jean-romain.roussel.1@ulaval.ca>
Diff between lidR versions 4.1.1 dated 2024-03-05 and 4.1.2 dated 2024-07-09
DESCRIPTION | 8 +- MD5 | 84 ++++++++++----------- NEWS.md | 22 ++++- R/Class-LAScatalog.R | 23 +++-- R/RcppExports.R | 8 -- R/algorithm-dec.R | 15 ++- R/algorithm-dtm.R | 5 - R/algorithm-gnd.R | 6 + R/catalog_apply.R | 4 - R/classify.R | 3 R/io_readLAS.R | 17 ++++ R/metrics_point.R | 15 +++ R/metrics_stdmetrics.R | 3 R/plot.R | 9 +- R/st_hull.R | 5 + R/utils_geometry.R | 27 ++++++ R/utils_threads.R | 3 build/vignette.rds |binary inst/doc/lidR-LAScatalog-class.html | 10 +- inst/include/lidR/Octree.h | 2 inst/include/lidR/QuadTree.h | 2 inst/include/lidR/Shapes.h | 30 ++++--- man/LAScatalog-class.Rd | 2 man/catalog_apply.Rd | 4 - man/classify.Rd | 3 man/dtm_kriging.Rd | 4 - man/gnd_csf.Rd | 3 man/gnd_mcc.Rd | 3 man/nstdmetrics.Rd | 3 man/plot.Rd | 4 - man/sample_homogenize.Rd | 2 man/sample_random.Rd | 4 - src/LAS.cpp | 136 ++++++++++++++++++---------------- src/LAS.h | 4 - src/RcppExports.cpp | 26 +----- src/RcppFunction.cpp | 8 +- src/concaveman/concaveman.h | 2 tests/testthat/Rplots.pdf |binary tests/testthat/setup-testthat.R | 1 tests/testthat/test-classify_ground.R | 24 +++++- tests/testthat/test-metrics_points.R | 2 tests/testthat/test-print.R | 2 tests/testthat/test-segment_shape.R | 2 43 files changed, 335 insertions(+), 205 deletions(-)
Title: Enhanced 'PAM50' Subtyping of Breast Cancer
Description: Accurate classification of breast cancer tumors based on gene expression data is not a trivial task, and it lacks standard practices.The 'PAM50' classifier, which uses 50 gene centroid correlation distances to classify tumors, faces challenges with balancing estrogen receptor (ER) status and gene centering. The 'PCAPAM50' package leverages principal component analysis and iterative 'PAM50' calls to create a gene expression-based ER-balanced subset for gene centering, avoiding the use of protein expression-based ER data resulting into an enhanced Breast Cancer subtyping.
Author: Praveen-Kumar Raj-Kumar [aut, cre, cph],
Boyi Chen [aut],
Ming-Wen Hu [aut],
Tyler Hohenstein [aut],
Jianfang Liu [aut],
Craig D. Shriver [aut],
Xiaoying Lin [aut, cph],
Hai Hu [aut, cph]
Maintainer: Praveen-Kumar Raj-Kumar <p.rajkumar@wriwindber.org>
Diff between PCAPAM50 versions 1.0.0 dated 2024-07-08 and 1.0.1 dated 2024-07-09
DESCRIPTION | 15 ++++++++------- MD5 | 4 ++-- inst/doc/PCAPAM50_vignette.html | 4 ++-- 3 files changed, 12 insertions(+), 11 deletions(-)
Title: 'DataSHIELD' Client for 'MOLGENIS Armadillo'
Description: 'DataSHIELD' is an infrastructure and series of R packages that
enables the remote and 'non-disclosive' analysis of sensitive research data.
This package is the 'DataSHIELD' interface implementation to analyze data
shared on a 'MOLGENIS Armadillo' server. 'MOLGENIS Armadillo' is a
light-weight 'DataSHIELD' server using a file store and an 'RServe' server.
Author: Mariska Slofstra [aut, cre] ,
Sido Haakma [aut] ,
Tommy de Boer [aut] ,
Fleur Kelpin [aut] ,
MOLGENIS org [cph, fnd]
Maintainer: Mariska Slofstra <m.k.slofstra@umcg.nl>
Diff between DSMolgenisArmadillo versions 2.0.5 dated 2023-10-30 and 2.0.9 dated 2024-07-09
DESCRIPTION | 11 MD5 | 50 NAMESPACE | 5 R/ArmadilloConnection.R | 14 R/ArmadilloDriver.R | 2 R/ArmadilloResult.R | 8 R/utils.R | 30 README.md | 17 build/vignette.rds |binary inst/doc/DSMolgenisArmadillo.html | 931 ++++++---- inst/doc/development.html | 1790 +++++++++++---------- inst/doc/workspaces.Rmd | 36 inst/doc/workspaces.html | 470 ++++- man/ArmadilloConnection-class.Rd | 2 man/ArmadilloDriver-class.Rd | 2 man/ArmadilloResult-class.Rd | 2 man/dsAssignResource-ArmadilloConnection-method.Rd | 2 man/dsDisconnect-ArmadilloConnection-method.Rd | 2 man/dsIsAsync-ArmadilloConnection-method.Rd | 2 man/dsListResources-ArmadilloConnection-method.Rd | 2 man/dsListTables-ArmadilloConnection-method.Rd | 2 tests/testthat/test-ArmadilloConnection.R | 20 tests/testthat/test-ArmadilloResult.R | 20 tests/testthat/test-utils.R | 82 vignettes/workspaces.Rmd | 36 vignettes/workspaces.Rmd.orig | 4 26 files changed, 2154 insertions(+), 1388 deletions(-)
More information about DSMolgenisArmadillo at CRAN
Permanent link
Title: Easy Dockerfile Creation from R
Description: Build a Dockerfile straight from your R session.
'dockerfiler' allows you to create step by step a Dockerfile, and
provide convenient tools to wrap R code inside this Dockerfile.
Author: Colin Fay [cre, aut] ,
Vincent Guyader [aut] ,
Josiah Parry [aut] ,
Sebastien Rochette [aut]
Maintainer: Colin Fay <contact@colinfay.me>
Diff between dockerfiler versions 0.2.2 dated 2023-11-13 and 0.2.3 dated 2024-07-09
DESCRIPTION | 14 +-- MD5 | 41 +++++------ NAMESPACE | 6 - NEWS.md | 14 +++ R/compact_sysreqs.R | 2 R/dock_from_renv.R | 116 ++++++++++---------------------- R/gen_base_image.R | 12 +-- R/get_sysreqs.R | 78 +-------------------- build/vignette.rds |binary inst/doc/dockerfile-from-renv-lock.R | 4 - inst/doc/dockerfile-from-renv-lock.Rmd | 14 +-- inst/doc/dockerfiler.R | 4 - inst/doc/dockerfiler.html | 4 - man/compact_sysreqs.Rd | 2 man/dock_from_renv.Rd | 23 +++++- man/get_sysreqs.Rd | 3 tests/testthat/setup_cache_dir.R |only tests/testthat/test-dock_from_desc.R | 31 ++++++-- tests/testthat/test-dock_from_renv.R | 48 +++++++++++-- tests/testthat/test-dockerbuild.R | 1 tests/testthat/test-get_sysreqs.R | 32 -------- vignettes/dockerfile-from-renv-lock.Rmd | 14 +-- 22 files changed, 203 insertions(+), 260 deletions(-)
Title: 'Arrow' Database Connectivity ('ADBC') 'PostgreSQL' Driver
Description: Provides a developer-facing interface to the 'Arrow' Database
Connectivity ('ADBC') 'PostgreSQL' driver for the purposes of building high-level
database interfaces for users. 'ADBC' <https://arrow.apache.org/adbc/> is
an API standard for database access libraries that uses 'Arrow' for result
sets and query parameters.
Author: Dewey Dunnington [aut, cre] ,
Apache Arrow [aut, cph],
Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between adbcpostgresql versions 0.12.0 dated 2024-05-22 and 0.13.0 dated 2024-07-09
DESCRIPTION | 6 MD5 | 16 - src/c/driver/common/utils.c | 6 src/c/driver/postgresql/connection.cc | 68 ++--- src/c/driver/postgresql/copy/writer.h | 2 src/c/driver/postgresql/statement.cc | 23 + src/c/vendor/nanoarrow/nanoarrow.c | 105 ++++++-- src/c/vendor/nanoarrow/nanoarrow.h | 171 +++++++++----- src/c/vendor/nanoarrow/nanoarrow.hpp | 415 +++++++++++++++++++++++++++++++++- 9 files changed, 680 insertions(+), 132 deletions(-)
More information about adbcpostgresql at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-06-25 1.1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-05-16 0.0.31
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-06 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-07-14 1.1-1
Title: Lightweight Well-Known Geometry Parsing
Description: Provides a minimal R and C++ API for parsing
well-known binary and well-known text representation of
geometries to and from R-native formats.
Well-known binary is compact
and fast to parse; well-known text is human-readable
and is useful for writing tests. These formats are
useful in R only if the information they contain can be
accessed in R, for which high-performance functions
are provided here.
Author: Dewey Dunnington [aut, cre] ,
Edzer Pebesma [aut] ,
Anthony North [ctb]
Maintainer: Dewey Dunnington <dewey@fishandwhistle.net>
Diff between wk versions 0.9.1 dated 2023-11-29 and 0.9.2 dated 2024-07-09
DESCRIPTION | 6 +-- MD5 | 16 ++++---- NAMESPACE | 2 + NEWS.md | 20 ++++++---- R/pkg-sf.R | 11 +++++ src/internal/fast_float/fast_float.h | 20 +++++----- src/transform.c | 2 - tests/testthat/test-pkg-sf.R | 13 ++++++ tests/testthat/test-transform.R | 70 +++++++++++++++++++++++++++++++++++ 9 files changed, 131 insertions(+), 29 deletions(-)
Title: Modelling of Extreme Values
Description: Various tools for the analysis of univariate, multivariate and functional extremes. Exact simulation from max-stable processes [Dombry, Engelke and Oesting (2016) <doi:10.1093/biomet/asw008>, R-Pareto processes for various parametric models, including Brown-Resnick (Wadsworth and Tawn, 2014, <doi:10.1093/biomet/ast042>) and Extremal Student (Thibaud and Opitz, 2015, <doi:10.1093/biomet/asv045>). Threshold selection methods, including Wadsworth (2016) <doi:10.1080/00401706.2014.998345>, and Northrop and Coleman (2014) <doi:10.1007/s10687-014-0183-z>. Multivariate extreme diagnostics. Estimation and likelihoods for univariate extremes, e.g., Coles (2001) <doi:10.1007/978-1-4471-3675-0>.
Author: Leo Belzile [aut, cre] ,
Jennifer L. Wadsworth [aut],
Paul J. Northrop [aut],
Scott D. Grimshaw [aut],
Jin Zhang [ctb],
Michael A. Stephens [ctb],
Art B. Owen [ctb],
Raphael Huser [aut]
Maintainer: Leo Belzile <belzilel@gmail.com>
Diff between mev versions 1.16 dated 2023-11-30 and 1.17 dated 2024-07-09
mev-1.16/mev/inst/doc/mev-vignette.Rnw |only mev-1.16/mev/inst/doc/mev-vignette.pdf |only mev-1.16/mev/vignettes/mev-vignette.Rnw |only mev-1.17/mev/DESCRIPTION | 10 mev-1.17/mev/MD5 | 67 ++-- mev-1.17/mev/NAMESPACE | 6 mev-1.17/mev/NEWS.md | 10 mev-1.17/mev/R/NCdiag.R | 2 mev-1.17/mev/R/Wdiag.R | 2 mev-1.17/mev/R/datasets.R | 16 - mev-1.17/mev/R/gp.R | 20 - mev-1.17/mev/R/mgplikelihoods.R | 15 mev-1.17/mev/R/multivar.R | 5 mev-1.17/mev/R/penultimate.R | 22 - mev-1.17/mev/R/profile.R | 21 + mev-1.17/mev/R/taildep.R | 1 mev-1.17/mev/R/tailindex.R | 2 mev-1.17/mev/R/threshold.R | 488 ++++++++++++++++++++------------ mev-1.17/mev/R/univdist.R | 7 mev-1.17/mev/R/vartymetric.R | 2 mev-1.17/mev/build/partial.rdb |binary mev-1.17/mev/build/vignette.rds |binary mev-1.17/mev/data/frwind.rda |binary mev-1.17/mev/data/pandemics.rda |binary mev-1.17/mev/inst/doc/mev-vignette.R |only mev-1.17/mev/inst/doc/mev-vignette.Rmd |only mev-1.17/mev/inst/doc/mev-vignette.html |only mev-1.17/mev/inst/sticker |only mev-1.17/mev/inst/tinytest/test-mle.R | 111 +++---- mev-1.17/mev/man/PickandsXU.Rd | 2 mev-1.17/mev/man/abisko.Rd | 2 mev-1.17/mev/man/angextrapo.Rd | 2 mev-1.17/mev/man/frwind.Rd | 12 mev-1.17/mev/man/geomagnetic.Rd | 2 mev-1.17/mev/man/lambdadep.Rd | 4 mev-1.17/mev/man/tstab.gpd.Rd | 3 mev-1.17/mev/vignettes/mev-vignette.Rmd |only mev-1.17/mev/vignettes/mevvignette.bib | 2 38 files changed, 510 insertions(+), 326 deletions(-)
Title: 'Arrow' Database Connectivity ('ADBC') Driver Manager
Description: Provides a developer-facing interface to 'Arrow' Database
Connectivity ('ADBC') for the purposes of driver development, driver
testing, and building high-level database interfaces for users. 'ADBC'
<https://arrow.apache.org/adbc/> is an API standard for database access
libraries that uses 'Arrow' for result sets and query parameters.
Author: Dewey Dunnington [aut, cre] ,
Apache Arrow [aut, cph],
Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between adbcdrivermanager versions 0.12.0 dated 2024-05-22 and 0.13.0 dated 2024-07-09
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/helpers.R | 2 +- man/read_adbc.Rd | 2 +- src/radbc.cc | 10 ++++++---- 5 files changed, 16 insertions(+), 14 deletions(-)
More information about adbcdrivermanager at CRAN
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