Thu, 11 Jul 2024

Package eSDM updated to version 0.4.2 with previous version 0.4.1 dated 2024-02-14

Title: Ensemble Tool for Predictions from Species Distribution Models
Description: A tool which allows users to create and evaluate ensembles of species distribution model (SDM) predictions. Functionality is offered through R functions or a GUI (R Shiny app). This tool can assist users in identifying spatial uncertainties and making informed conservation and management decisions. The package is further described in Woodman et al (2019) <doi:10.1111/2041-210X.13283>.
Author: Sam Woodman [aut, cre]
Maintainer: Sam Woodman <sam.woodman@noaa.gov>

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Package PAMpal updated to version 1.2.1 with previous version 1.0.0 dated 2023-08-11

Title: Load and Process Passive Acoustic Data
Description: Tools for loading and processing passive acoustic data. Read in data that has been processed in 'Pamguard' (<https://www.pamguard.org/>), apply a suite processing functions, and export data for reports or external modeling tools. Parameter calculations implement methods by Oswald et al (2007) <doi:10.1121/1.2743157>, Griffiths et al (2020) <doi:10.1121/10.0001229> and Baumann-Pickering et al (2010) <doi:10.1121/1.3479549>.
Author: Taiki Sakai [aut, cre], Jay Barlow [ctb], Emily Griffiths [ctb], Michael Oswald [ctb], Simone Baumann-Pickering [ctb], Julie Oswald [ctb]
Maintainer: Taiki Sakai <taiki.sakai@noaa.gov>

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Package ltable updated to version 2.0.4 with previous version 2.0.3 dated 2023-08-16

Title: Easy to Make (Lazy) Tables
Description: Constructs tables of counts and proportions out of data sets with possibility to insert tables to Excel, Word, HTML, and PDF documents. Transforms tables to data suitable for modelling. Features Gibbs sampling based log-linear (NB2) and power analyses (original by Oleksandr Ocheredko <doi:10.35566/isdsa2019c5>) for tabulated data.
Author: Ocheredko Oleksandr
Maintainer: Ocheredko Oleksandr <Ocheredko@yahoo.com>

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Package genieBPC updated to version 2.0.1 with previous version 1.1.1 dated 2024-03-29

Title: Project GENIE BioPharma Collaborative Data Processing Pipeline
Description: The American Association Research (AACR) Project Genomics Evidence Neoplasia Information Exchange (GENIE) BioPharma Collaborative represents a multi-year, multi-institution effort to build a pan-cancer repository of linked clinico-genomic data. The genomic and clinical data are provided in multiple releases (separate releases for each cancer cohort with updates following data corrections), which are stored on the data sharing platform 'Synapse' <https://www.synapse.org/>. The 'genieBPC' package provides a seamless way to obtain the data corresponding to each release from 'Synapse' and to prepare datasets for analysis.
Author: Jessica A. Lavery [aut, cre] , Michael A. Curry [aut] , Samantha Brown [aut] , Karissa Whiting [aut] , Hannah Fuchs [aut] , Axel Martin [aut], Daniel D. Sjoberg [ctb]
Maintainer: Jessica A. Lavery <laveryj@mskcc.org>

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Package spaths updated to version 1.1.3 with previous version 1.1.2 dated 2024-05-30

Title: Shortest Paths Between Points in Grids
Description: Shortest paths between points in grids. Optional barriers and custom transition functions. Applications regarding planet Earth, as well as generally spheres and planes. Optimized for computational performance, customizability, and user friendliness. Graph-theoretical implementation tailored to gridded data. Currently focused on Dijkstra's (1959) <doi:10.1007/BF01386390> algorithm. Future updates broaden the scope to other least cost path algorithms and to centrality measures.
Author: Christian Dueben [aut, cre]
Maintainer: Christian Dueben <cdueben.ml+cran@proton.me>

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Package samc updated to version 3.3.0 with previous version 3.2.1 dated 2023-05-09

Title: Spatial Absorbing Markov Chains
Description: Implements functions for working with absorbing Markov chains. The implementation is based on the framework described in "Toward a unified framework for connectivity that disentangles movement and mortality in space and time" by Fletcher et al. (2019) <doi:10.1111/ele.13333>, which applies them to spatial ecology. This framework incorporates both resistance and absorption with spatial absorbing Markov chains (SAMC) to provide several short-term and long-term predictions for metrics related to connectivity in landscapes. Despite the ecological context of the framework, this package can be used in any application of absorbing Markov chains.
Author: Andrew Marx [aut, cre, cph] , Robert Fletcher [ctb] , Miguel Acevedo [ctb] , Jorge Sefair [ctb] , Chao Wang [ctb] , Hughes Josie [ctb] , Barrett Griffin [ctb]
Maintainer: Andrew Marx <ajm.rpackages@gmail.com>

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Package mstate updated to version 0.3.3 with previous version 0.3.2 dated 2021-11-08

Title: Data Preparation, Estimation and Prediction in Multi-State Models
Description: Contains functions for data preparation, descriptives, hazard estimation and prediction with Aalen-Johansen or simulation in competing risks and multi-state models, see Putter, Fiocco, Geskus (2007) <doi:10.1002/sim.2712>.
Author: Hein Putter [aut, cre], Liesbeth C. de Wreede [aut], Marta Fiocco [aut], Ronald B. Geskus [ctb], Edouard F. Bonneville [aut], Damjan Manevski [ctb]
Maintainer: Hein Putter <H.Putter@lumc.nl>

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Package rmdHelpers updated to version 1.3.1 with previous version 1.2 dated 2016-07-11

Title: Helper Functions for Rmd Documents
Description: A series of functions to aid in repeated tasks for Rmd documents. All details are to my personal preference, though I am happy to add flexibility if there are use cases I am missing. I will continue updating with new functions as I add utility functions for myself.
Author: Mark Peterson
Maintainer: Mark Peterson <mark.phillip.peterson@gmail.com>

Diff between rmdHelpers versions 1.2 dated 2016-07-11 and 1.3.1 dated 2024-07-11

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Package isnullptr updated to version 1.0.2 with previous version 1.0.1 dated 2017-09-28

Title: Check if an 'externalptr' is a Null Pointer
Description: Check if an 'externalptr' is a null pointer. R does currently not have a native function for that purpose. This package contains a C function that returns TRUE in case of a null pointer.
Author: Jonas Foerster [aut, cre]
Maintainer: Jonas Foerster <jonasfoerster@gmail.com>

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Package rfacebookstat updated to version 2.11.0 with previous version 2.10.0 dated 2024-01-25

Title: Load Data from Facebook API Marketing
Description: Load data by campaigns, ads, ad sets and insights, ad account and business manager from Facebook Marketing API into R. For more details see official documents by Facebook Marketing API <https://developers.facebook.com/docs/marketing-apis/>.
Author: Alexey Seleznev [aut, cre]
Maintainer: Alexey Seleznev <selesnow@gmail.com>

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Package mvtsplot updated to version 1.0-5 with previous version 1.0-4 dated 2022-05-10

Title: Multivariate Time Series Plot
Description: A function for plotting multivariate time series data.
Author: Roger D. Peng <roger.peng@austin.utexas.edu>
Maintainer: Roger D. Peng <roger.peng@austin.utexas.edu>

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Package metap updated to version 1.11 with previous version 1.10 dated 2024-04-15

Title: Meta-Analysis of Significance Values
Description: The canonical way to perform meta-analysis involves using effect sizes. When they are not available this package provides a number of methods for meta-analysis of significance values including the methods of Edgington, Fisher, Lancaster, Stouffer, Tippett, and Wilkinson; a number of data-sets to replicate published results; and routines for graphical display.
Author: Michael Dewey [aut, cre]
Maintainer: Michael Dewey <lists@dewey.myzen.co.uk>

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Package CICA updated to version 1.1.0 with previous version 1.0.2 dated 2024-02-05

Title: Clusterwise Independent Component Analysis
Description: Clustering multi-subject resting state functional Magnetic Resonance Imaging data. This methods enables the clustering of subjects based on multi-subject resting state functional Magnetic Resonance Imaging data. Objects are clustered based on similarities and differences in cluster-specific estimated components obtained by Independent Component Analysis.
Author: Jeffrey Durieux [aut, cre], Tom Wilderjans [aut], Juan Claramunt Gonzalez [ctb]
Maintainer: Jeffrey Durieux <durieux.jeffrey@gmail.com>

Diff between CICA versions 1.0.2 dated 2024-02-05 and 1.1.0 dated 2024-07-11

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Package RCurl updated to version 1.98-1.16 with previous version 1.98-1.14 dated 2024-01-09

Title: General Network (HTTP/FTP/...) Client Interface for R
Description: A wrapper for 'libcurl' <https://curl.se/libcurl/> Provides functions to allow one to compose general HTTP requests and provides convenient functions to fetch URIs, get & post forms, etc. and process the results returned by the Web server. This provides a great deal of control over the HTTP/FTP/... connection and the form of the request while providing a higher-level interface than is available just using R socket connections. Additionally, the underlying implementation is robust and extensive, supporting FTP/FTPS/TFTP (uploads and downloads), SSL/HTTPS, telnet, dict, ldap, and also supports cookies, redirects, authentication, etc.
Author: CRAN Team [ctb, cre] , Duncan Temple Lang [aut]
Maintainer: CRAN Team <CRAN@r-project.org>

Diff between RCurl versions 1.98-1.14 dated 2024-01-09 and 1.98-1.16 dated 2024-07-11

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New package quantspec with initial version 1.2-4
Package: quantspec
Version: 1.2-4
Encoding: UTF-8
Date: 2024-07-10
Title: Quantile-Based Spectral Analysis of Time Series
Depends: R (>= 3.0.0), stats4
Suggests: testthat
Imports: methods, graphics, quantreg, abind, zoo, snowfall, Rcpp (>= 0.11.0)
Description: Methods to determine, smooth and plot quantile periodograms for univariate and multivariate time series. See Kley (2016) <doi:10.18637/jss.v070.i03> for a description and tutorial.
License: GPL (>= 2)
URL: https://github.com/tobiaskley/quantspec
BugReports: https://github.com/tobiaskley/quantspec/issues
LazyData: TRUE
LinkingTo: Rcpp
NeedsCompilation: yes
Packaged: 2024-07-10 13:05:01 UTC; tkley
Author: Tobias Kley [aut, cre], Stefan Birr [ctb]
Maintainer: Tobias Kley <tobias.kley@uni-goettingen.de>
Repository: CRAN
Date/Publication: 2024-07-11 12:50:02 UTC

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Package openalexR updated to version 1.4.0 with previous version 1.3.1 dated 2024-05-08

Title: Getting Bibliographic Records from 'OpenAlex' Database Using 'DSL' API
Description: A set of tools to extract bibliographic content from 'OpenAlex' database using API <https://docs.openalex.org>.
Author: Massimo Aria [aut, cre, cph] , Corrado Cuccurullo [ctb] , Trang Le [aut] , June Choe [aut]
Maintainer: Massimo Aria <aria@unina.it>

Diff between openalexR versions 1.3.1 dated 2024-05-08 and 1.4.0 dated 2024-07-11

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More information about openalexR at CRAN
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Package datawizard updated to version 0.12.0 with previous version 0.11.0 dated 2024-06-05

Title: Easy Data Wrangling and Statistical Transformations
Description: A lightweight package to assist in key steps involved in any data analysis workflow: (1) wrangling the raw data to get it in the needed form, (2) applying preprocessing steps and statistical transformations, and (3) compute statistical summaries of data properties and distributions. It is also the data wrangling backend for packages in 'easystats' ecosystem. References: Patil et al. (2022) <doi:10.21105/joss.04684>.
Author: Indrajeet Patil [aut] , Etienne Bacher [aut, cre] , Dominique Makowski [aut] , Daniel Luedecke [aut] , Mattan S. Ben-Shachar [aut] , Brenton M. Wiernik [aut] , Remi Theriault [ctb] , Thomas J. Faulkenberry [rev], Robert Garrett [rev]
Maintainer: Etienne Bacher <etienne.bacher@protonmail.com>

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Package catregs updated to version 0.2.1 with previous version 0.2.0 dated 2024-06-11

Title: Post-Estimation Functions for Generalized Linear Mixed Models
Description: Several functions for working with mixed effects regression models for limited dependent variables. The functions facilitate post-estimation of model predictions or margins, and comparisons between model predictions for assessing or probing moderation. Additional helper functions facilitate model comparisons and implements simulation-based inference for model predictions of alternative-specific outcome models. See also, Melamed and Doan (2024, ISBN: 978-1032509518).
Author: David Melamed [aut, cre]
Maintainer: David Melamed <dmmelamed@gmail.com>

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Package spant updated to version 2.22.0 with previous version 2.21.0 dated 2024-05-30

Title: MR Spectroscopy Analysis Tools
Description: Tools for reading, visualising and processing Magnetic Resonance Spectroscopy data. The package includes methods for spectral fitting: Wilson (2021) <DOI:10.1002/mrm.28385> and spectral alignment: Wilson (2018) <DOI:10.1002/mrm.27605>.
Author: Martin Wilson [cre, aut] , Yong Wang [ctb], John Muschelli [ctb]
Maintainer: Martin Wilson <martin@pipegrep.co.uk>

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Package disaggR updated to version 1.0.5.3 with previous version 1.0.5.2 dated 2024-02-09

Title: Two-Steps Benchmarks for Time Series Disaggregation
Description: The twoStepsBenchmark() and threeRuleSmooth() functions allow you to disaggregate a low-frequency time series with higher frequency time series, using the French National Accounts methodology. The aggregated sum of the resulting time series is strictly equal to the low-frequency time series within the benchmarking window. Typically, the low-frequency time series is an annual one, unknown for the last year, and the high frequency one is either quarterly or monthly. See "Methodology of quarterly national accounts", Insee Méthodes N°126, by Insee (2012, ISBN:978-2-11-068613-8, <https://www.insee.fr/en/information/2579410>).
Author: Arnaud Feldmann [aut] , Pauline Meinzel [cre], Thomas Laurent [ctb] , Franck Arnaud [ctb] , Institut national de la statistique et des etudes economiques [cph]
Maintainer: Pauline Meinzel <pauline.meinzel@insee.fr>

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