Title: Access, Retrieve, and Work with CMHC Data
Description: Wrapper around the Canadian Mortgage and Housing Corporation (CMHC) web interface. It enables programmatic and reproducible access to a wide variety of housing data from CMHC.
Author: Jens von Bergmann
Maintainer: Jens von Bergmann <jens@mountainmath.ca>
Diff between cmhc versions 0.2.7 dated 2023-12-13 and 0.2.8 dated 2024-07-12
DESCRIPTION | 8 ++++---- MD5 | 24 ++++++++++++------------ NEWS.md | 6 ++++++ R/cmhc.R | 12 +++++++++++- R/cmhc_geography.R | 9 +++++---- R/cmhc_tables.R | 19 +++++++++++++++---- R/helpers.R | 7 +++++++ README.md | 6 +++--- build/vignette.rds |binary data/cmhc_cma_translation_data.rda |binary inst/doc/basic_usage.html | 12 ++++++------ inst/doc/rental_universe.html | 11 ++++++----- man/get_cmhc.Rd | 3 +++ 13 files changed, 78 insertions(+), 39 deletions(-)
Title: Robust Linear Quantile Regression
Description: It fits a robust linear quantile regression model using a new family of zero-quantile distributions for the error term. Missing values and censored observations can be handled as well. This family of distribution includes skewed versions of the Normal, Student's t, Laplace, Slash and Contaminated Normal distribution. It also performs logistic quantile regression for bounded responses as shown in Galarza et.al.(2020) <doi:10.1007/s13571-020-00231-0>. It provides estimates and full inference. It also provides envelopes plots for assessing the fit and confidences bands when several quantiles are provided simultaneously.
Author: Christian E. Galarza <chedgala@espol.edu.ec>, Luis Benites <lbenitess@pucp.edu.pe>, Marcelo Bourguignon <m.p.bourguignon@gmail.com>, Victor H. Lachos <hlachos@uconn.edu>
Maintainer: Christian E. Galarza <cgalarza88@gmail.com>
Diff between lqr versions 5.1 dated 2024-06-28 and 5.2 dated 2024-07-12
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- man/lqr-package.Rd | 9 --------- 3 files changed, 6 insertions(+), 15 deletions(-)
Title: Quantile Regression for Nonlinear Mixed-Effects Models
Description: Quantile regression (QR) for Nonlinear
Mixed-Effects Models via the asymmetric Laplace distribution (ALD).
It uses the Stochastic Approximation of the EM (SAEM) algorithm for
deriving exact maximum likelihood estimates and full inference results
for the fixed-effects and variance components.
It also provides prediction and graphical summaries for assessing the algorithm
convergence and fitting results.
Author: Christian E. Galarza <chedgala@espol.edu.ec> and Victor H. Lachos <hlachos@uconn.edu>
Maintainer: Christian E. Galarza <cgalarza88@gmail.com>
Diff between qrNLMM versions 3.3 dated 2022-08-18 and 3.4 dated 2024-07-12
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/QRNLMM.R | 12 +++++++----- R/QSAEM_NLMM.R | 29 +++++++++++++++++++---------- build/partial.rdb |binary 5 files changed, 34 insertions(+), 23 deletions(-)
Title: Fast Imputation of Missing Values
Description: Alternative implementation of the beautiful 'MissForest'
algorithm used to impute mixed-type data sets by chaining random
forests, introduced by Stekhoven, D.J. and Buehlmann, P. (2012)
<doi:10.1093/bioinformatics/btr597>. Under the hood, it uses the
lightning fast random forest package 'ranger'. Between the iterative
model fitting, we offer the option of using predictive mean matching.
This firstly avoids imputation with values not already present in the
original data (like a value 0.3334 in 0-1 coded variable). Secondly,
predictive mean matching tries to raise the variance in the resulting
conditional distributions to a realistic level. This would allow,
e.g., to do multiple imputation when repeating the call to
missRanger(). A formula interface allows to control which variables
should be imputed by which.
Author: Michael Mayer [aut, cre]
Maintainer: Michael Mayer <mayermichael79@gmail.com>
Diff between missRanger versions 2.4.0 dated 2023-11-19 and 2.5.0 dated 2024-07-12
DESCRIPTION | 32 +++++++--------- MD5 | 28 +++++++------- NEWS.md | 10 +++++ R/missRanger.R | 6 ++- README.md | 2 - build/vignette.rds |binary inst/doc/missRanger.R | 2 - inst/doc/missRanger.html | 26 ++++++------- inst/doc/multiple_imputation.R | 2 - inst/doc/multiple_imputation.Rmd | 29 +++++++-------- inst/doc/multiple_imputation.html | 66 +++++++++++++++-------------------- inst/doc/working_with_censoring.R | 2 - inst/doc/working_with_censoring.html | 4 +- tests/testthat/test-missRanger.R | 14 +++++++ vignettes/multiple_imputation.Rmd | 29 +++++++-------- 15 files changed, 134 insertions(+), 118 deletions(-)
Title: Computerized Adaptive Testing with Multidimensional Item
Response Theory
Description: Provides tools to generate HTML interfaces for adaptive
and non-adaptive tests using the shiny
package (Chalmers (2016) <doi:10.18637/jss.v071.i05>).
Suitable for applying unidimensional and multidimensional
computerized adaptive tests (CAT) using item response theory methodology and for
creating simple questionnaires forms to collect response data directly in R.
Additionally, optimal test designs (e.g., "shadow testing") are supported
for tests that contain a large number of item selection constraints.
Finally, package contains tools useful for performing Monte Carlo simulations
for studying test item banks.
Author: Phil Chalmers [aut, cre] ,
Magnus Nordmo [ctb]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>
Diff between mirtCAT versions 1.13 dated 2023-10-17 and 1.14 dated 2024-07-12
DESCRIPTION | 8 - MD5 | 44 ++++---- NEWS.md | 7 + R/ShinyGUIClass.R | 7 - R/createShinyGUI.R | 6 - R/extract.mirtCAT.R | 4 R/findNextCATItem.R | 6 - R/generate.mirt_object.R | 8 - R/mirtCAT-package.R | 1 R/mirtCAT.R | 73 ++++++++------ R/mirtCAT_preamble.R | 3 R/server.R | 19 ++- R/zzz-methods.R | 6 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/mirtCAT-vignettes.html | 208 +++++++++++----------------------------- man/createShinyGUI.Rd | 6 - man/extract.mirtCAT.Rd | 4 man/findNextItem.Rd | 4 man/generate.mirt_object.Rd | 8 - man/mirtCAT-package.Rd | 1 man/mirtCAT.Rd | 81 +++++++++------ tests/GUI-tests/GUI-tests.R | 76 ++++++++------ 23 files changed, 277 insertions(+), 303 deletions(-)
Title: Kernel SHAP
Description: Efficient implementation of Kernel SHAP, see Lundberg and Lee
(2017), and Covert and Lee (2021)
<http://proceedings.mlr.press/v130/covert21a>. Furthermore, for up to
14 features, exact permutation SHAP values can be calculated. The
package plays well together with meta-learning packages like
'tidymodels', 'caret' or 'mlr3'. Visualizations can be done using the
R package 'shapviz'.
Author: Michael Mayer [aut, cre] ,
David Watson [aut] ,
Przemyslaw Biecek [ctb]
Maintainer: Michael Mayer <mayermichael79@gmail.com>
Diff between kernelshap versions 0.5.0 dated 2024-05-26 and 0.6.0 dated 2024-07-12
DESCRIPTION | 20 ++++--- MD5 | 24 ++++----- NEWS.md | 13 ++++ R/additive_shap.R | 16 ++++-- R/utils.R | 72 ++++----------------------- R/utils_kernelshap.R | 28 ---------- README.md | 23 +------- man/additive_shap.Rd | 16 ++++-- tests/testthat/test-additive_shap.R | 6 +- tests/testthat/test-kernelshap-multioutput.R | 14 ----- tests/testthat/test-kernelshap.R | 1 tests/testthat/test-permshap-multioutput.R | 13 ---- tests/testthat/test-utils.R | 31 +---------- 13 files changed, 87 insertions(+), 190 deletions(-)
Title: Generalized Convergence Diagnostics for Difficult MCMC
Algorithms
Description: Trace plots and convergence diagnostics for Markov Chain Monte Carlo (MCMC) algorithms on highly multivariate or unordered spaces. Methods outlined in a forthcoming paper.
Author: Luke Duttweiler [aut, cre, cph]
Maintainer: Luke Duttweiler <lduttweiler@hsph.harvard.edu>
Diff between genMCMCDiag versions 0.2.1 dated 2024-05-10 and 0.2.2 dated 2024-07-12
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NEWS.md | 6 +++--- README.md | 2 ++ man/genMCMCDiag-package.Rd | 2 +- 5 files changed, 15 insertions(+), 13 deletions(-)
Title: A Fast 'WHATWG' Compliant URL Parser
Description: A wrapper for 'ada-url', a 'WHATWG' compliant and fast URL parser written in modern 'C++'. Also contains auxiliary functions such as a public suffix extractor.
Author: David Schoch [aut, cre] ,
Chung-hong Chan [aut] ,
Yagiz Nizipli [ctb, cph] ,
Daniel Lemire [ctb, cph]
Maintainer: David Schoch <david@schochastics.net>
Diff between adaR versions 0.3.2 dated 2024-02-08 and 0.3.3 dated 2024-07-12
DESCRIPTION | 6 MD5 | 16 +- NEWS.md | 4 README.md | 16 +- build/vignette.rds |binary inst/doc/adaR.html | 26 +-- src/ada/ada.cpp | 410 +++++++++++++++++++++++++++++------------------------ src/ada/ada.h | 333 ++++++++++++++++++++++++++++++++++--------- src/ada/ada_c.h | 2 9 files changed, 532 insertions(+), 281 deletions(-)
Title: Quantile Regression for Linear Mixed-Effects Models
Description: Quantile regression (QR) for Linear
Mixed-Effects Models via the asymmetric Laplace distribution (ALD).
It uses the Stochastic Approximation of the EM (SAEM) algorithm for
deriving exact maximum likelihood estimates and full inference results
for the fixed-effects and variance components.
It also provides graphical summaries for assessing the algorithm
convergence and fitting results.
Author: Christian E. Galarza <cgalarza88@gmail.com> and Victor H. Lachos <hlachos@ime.unicamp.br>
Maintainer: Christian E. Galarza <cgalarza88@gmail.com>
Diff between qrLMM versions 2.2 dated 2022-10-25 and 2.3 dated 2024-07-12
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/QRLMM.R | 3 ++- 3 files changed, 8 insertions(+), 7 deletions(-)
Title: Kaya Identity Data for Nations and Regions
Description: Provides data for Kaya identity variables (population, gross
domestic product, primary energy consumption, and energy-related
CO2 emissions) for the world and for individual nations, and
utility functions for looking up data, plotting trends of
Kaya variables, and plotting the fuel mix for a given country
or region. The Kaya identity (Yoichi Kaya and Keiichi Yokobori,
"Environment, Energy, and Economy: Strategies for Sustainability"
(United Nations University Press, 1998) and
<https://en.wikipedia.org/wiki/Kaya_identity>) expresses a nation's
or region's greenhouse gas emissions in terms of its population,
per-capita Gross Domestic Product, the energy intensity of its
economy, and the carbon-intensity of its energy supply.
Author: Jonathan Gilligan [cre, aut]
Maintainer: Jonathan Gilligan <jonathan.gilligan@vanderbilt.edu>
Diff between kayadata versions 1.3.0 dated 2023-07-17 and 1.4.0 dated 2024-07-12
DESCRIPTION | 17 - LICENSE | 2 MD5 | 65 ++-- NAMESPACE | 16 - NEWS.md | 11 R/data.R | 6 R/kaya.R | 85 +++--- R/kayadata.R | 13 R/plot_kaya.R | 77 ++++- build/partial.rdb |binary build/vignette.rds |binary data/fuel_mix.rda |binary data/kaya_data.rda |binary data/td_trends.rda |binary data/td_values.rda |binary inst/WORDLIST | 1 inst/doc/kayadata.html | 37 +- inst/doc/policy_analysis.html | 86 +++--- man/figures/README-plot-fuel-mix-1.png |binary man/figures/README-plot-kaya-1.png |binary man/figures/README-plot-kaya-world-1.png |binary man/fuel_mix.Rd | 4 man/kaya_data.Rd | 2 man/kayadata-package.Rd | 17 + man/plot_fuel_mix.Rd | 2 man/plot_kaya.Rd | 7 man/project_top_down.Rd | 2 tests/testthat/_snaps/plot_kaya/fuel-mix-collapsed.svg | 20 - tests/testthat/_snaps/plot_kaya/fuel-mix-colors.svg | 24 - tests/testthat/_snaps/plot_kaya/fuel-mix-full.svg | 24 - tests/testthat/_snaps/plot_kaya/kaya-plot-with-colors.svg | 176 ++++++------ tests/testthat/_snaps/plot_kaya/kaya-plot.svg | 196 +++++++------- tests/testthat/test_consistency_fuel_mix.R | 5 tests/vdiffr.Rout.fail |only 34 files changed, 488 insertions(+), 407 deletions(-)
Title: Create an 'Area of Interest' Around a Constructed Dam for
Comparative Impact Evaluations
Description: Define a spatial 'Area of Interest' (AOI) around a constructed dam using hydrology data.
Dams have environmental and social impacts, both positive and negative.
Current analyses of dams have no consistent way to specify at what spatial extent we should evaluate these impacts.
'damAOI' implements methods to adjust reservoir polygons to match satellite-observed surface water areas, plot upstream and downstream rivers using elevation data and accumulated river flow, and draw buffers clipped by river basins around reservoirs and relevant rivers.
This helps to consistently determine the areas which could be impacted by dam construction, facilitating comparative analysis and informed infrastructure investments.
Author: Chris Littleboy [aut, cre] ,
Isabel Jones [ctb, fnd]
Maintainer: Chris Littleboy <chris.littleboy@stir.ac.uk>
Diff between damAOI versions 0.0 dated 2024-02-07 and 0.1 dated 2024-07-12
damAOI-0.0/damAOI/R/cropdata.R |only damAOI-0.0/damAOI/data/alqueva.rda |only damAOI-0.0/damAOI/data/basins_alqueva.rda |only damAOI-0.0/damAOI/inst/extdata/dem_alqueva.tif |only damAOI-0.0/damAOI/inst/extdata/fac_alqueva.tif |only damAOI-0.0/damAOI/inst/extdata/wb_alqueva.tif |only damAOI-0.0/damAOI/inst/extdata/wb_alqueva.tif.aux.json |only damAOI-0.0/damAOI/inst/extdata/wb_tehri.tif.aux.json |only damAOI-0.0/damAOI/man/alqueva.Rd |only damAOI-0.0/damAOI/man/basins_alqueva.rd |only damAOI-0.0/damAOI/man/basins_tehri.rd |only damAOI-0.0/damAOI/man/tehri.rd |only damAOI-0.1/damAOI/DESCRIPTION | 10 damAOI-0.1/damAOI/MD5 | 92 +- damAOI-0.1/damAOI/NAMESPACE | 2 damAOI-0.1/damAOI/R/adjustreservoirpolygon.R | 4 damAOI-0.1/damAOI/R/autogetpourpoints.R | 6 damAOI-0.1/damAOI/R/basinandbuffers.R | 9 damAOI-0.1/damAOI/R/getimpactedarea.R | 42 damAOI-0.1/damAOI/R/getnextpoint.R | 32 damAOI-0.1/damAOI/R/getriverpoints.R | 16 damAOI-0.1/damAOI/R/getshinyparams.R | 2 damAOI-0.1/damAOI/R/makesystem.R |only damAOI-0.1/damAOI/R/pointstolines.R | 12 damAOI-0.1/damAOI/R/preprocessing.R |only damAOI-0.1/damAOI/README.md | 383 ++++---- damAOI-0.1/damAOI/build/vignette.rds |binary damAOI-0.1/damAOI/data/system.rda |only damAOI-0.1/damAOI/inst/doc/damAOI.R | 197 ++-- damAOI-0.1/damAOI/inst/doc/damAOI.Rmd | 322 ++++--- damAOI-0.1/damAOI/inst/doc/damAOI.html | 434 +++++----- damAOI-0.1/damAOI/inst/extdata/dem_system.tif |only damAOI-0.1/damAOI/man/adjustreservoirpolygon.Rd | 2 damAOI-0.1/damAOI/man/basinandbuffers.Rd | 2 damAOI-0.1/damAOI/man/basins_tehri.Rd |only damAOI-0.1/damAOI/man/damAOI-package.Rd | 10 damAOI-0.1/damAOI/man/figures/README-adjust-1.png |only damAOI-0.1/damAOI/man/figures/README-basins-1.png |only damAOI-0.1/damAOI/man/figures/README-pourpoints-1.png |only damAOI-0.1/damAOI/man/figures/README-riverpoints-1.png |only damAOI-0.1/damAOI/man/figures/README-systems-1.png |only damAOI-0.1/damAOI/man/figures/README-systems-2.png |only damAOI-0.1/damAOI/man/figures/README-unnamed-chunk-2-1.png |binary damAOI-0.1/damAOI/man/figures/README-unnamed-chunk-3-1.png |binary damAOI-0.1/damAOI/man/figures/README-unnamed-chunk-4-1.png |binary damAOI-0.1/damAOI/man/getimpactedarea.Rd | 11 damAOI-0.1/damAOI/man/getshinyparams.Rd | 2 damAOI-0.1/damAOI/man/makesystem.Rd |only damAOI-0.1/damAOI/man/pointstolines.Rd | 4 damAOI-0.1/damAOI/man/preprocessing.Rd |only damAOI-0.1/damAOI/man/system.Rd |only damAOI-0.1/damAOI/man/tehri.Rd |only damAOI-0.1/damAOI/tests/testthat/Rplots.pdf |only damAOI-0.1/damAOI/tests/testthat/test-adjustreservoirpolygon.R | 14 damAOI-0.1/damAOI/tests/testthat/test-basinsandbuffers.R | 48 - damAOI-0.1/damAOI/tests/testthat/test-getimpactedarea.R | 40 damAOI-0.1/damAOI/tests/testthat/test-getriverpoints.R | 41 damAOI-0.1/damAOI/tests/testthat/test-makesystem.R |only damAOI-0.1/damAOI/vignettes/damAOI.Rmd | 322 ++++--- damAOI-0.1/damAOI/vignettes/man |only 60 files changed, 1161 insertions(+), 898 deletions(-)
More information about SmithWilsonYieldCurve at CRAN
Permanent link
Title: Moment Condition Based Estimation of Linear Dynamic Panel Data
Models
Description: Linear dynamic panel data modeling based on linear and
nonlinear moment conditions as proposed by
Holtz-Eakin, Newey, and Rosen (1988) <doi:10.2307/1913103>,
Ahn and Schmidt (1995) <doi:10.1016/0304-4076(94)01641-C>,
and Arellano and Bover (1995) <doi:10.1016/0304-4076(94)01642-D>.
Estimation of the model parameters relies on the Generalized
Method of Moments (GMM) and instrumental variables (IV) estimation,
numerical optimization (when nonlinear moment conditions are
employed) and the computation of closed form solutions (when
estimation is based on linear moment conditions). One-step,
two-step and iterated estimation is available. For inference
and specification
testing, Windmeijer (2005) <doi:10.1016/j.jeconom.2004.02.005>
and doubly corrected standard errors
(Hwang, Kang, Lee, 2021 <doi:10.1016/j.jeconom.2020.09.010>)
are available. Additionally, serial correlation tests, tests for
overidentification, and Wald tests are provided. Functions for
visualiz [...truncated...]
Author: Markus Fritsch [aut, cre],
Joachim Schnurbus [aut],
Andrew Adrian Yu Pua [aut]
Maintainer: Markus Fritsch <Markus.Fritsch@uni-Passau.de>
Diff between pdynmc versions 0.9.10 dated 2023-11-24 and 0.9.11 dated 2024-07-12
pdynmc-0.9.10/pdynmc/inst/tests/CopyOfcheck_incDemo.R |only pdynmc-0.9.11/pdynmc/DESCRIPTION | 28 pdynmc-0.9.11/pdynmc/MD5 | 38 pdynmc-0.9.11/pdynmc/NAMESPACE | 9 pdynmc-0.9.11/pdynmc/NEWS.md | 25 pdynmc-0.9.11/pdynmc/R/globals.R | 2 pdynmc-0.9.11/pdynmc/R/pdynmc_NLIV.R |only pdynmc-0.9.11/pdynmc/R/pdynmc_estFct.R | 550 +++++----- pdynmc-0.9.11/pdynmc/R/pdynmc_furtherHelperFcts.R | 272 ++++ pdynmc-0.9.11/pdynmc/R/pdynmc_instMatFcts.R | 200 ++- pdynmc-0.9.11/pdynmc/R/pdynmc_specTestFcst.R | 1 pdynmc-0.9.11/pdynmc/build/partial.rdb |binary pdynmc-0.9.11/pdynmc/build/vignette.rds |binary pdynmc-0.9.11/pdynmc/inst/CITATION | 6 pdynmc-0.9.11/pdynmc/inst/REFERENCES.bib | 11 pdynmc-0.9.11/pdynmc/inst/doc/pdynmc-introLong.pdf |binary pdynmc-0.9.11/pdynmc/inst/doc/pdynmc-pres-in-a-nutshell.pdf |binary pdynmc-0.9.11/pdynmc/inst/tests/arguments_for_StepByStepFunctionChecksABdata.R | 26 pdynmc-0.9.11/pdynmc/inst/tests/arguments_for_StepByStepFunctionChecksMigration.R |only pdynmc-0.9.11/pdynmc/man/FDLS.Rd |only pdynmc-0.9.11/pdynmc/man/NLIV.Rd |only pdynmc-0.9.11/pdynmc/man/NLIV.alt.Rd |only pdynmc-0.9.11/pdynmc/man/pdynmc.Rd | 17 23 files changed, 813 insertions(+), 372 deletions(-)
Title: Multiple Treatment Effects Regression
Description: Implements contamination bias diagnostics and alternative
estimators for regressions with multiple treatments. The implementation is
based on Goldsmith-Pinkham, Hull, and Kolesár (2024)
<doi:10.48550/arXiv.2106.05024>.
Author: Michal Kolesar [aut, cre] ,
Paul Goldsmith-Pinkham [ctb],
Peter Hull [ctb]
Maintainer: Michal Kolesar <kolesarmi@googlemail.com>
Diff between multe versions 1.0.1 dated 2024-06-19 and 1.1.0 dated 2024-07-12
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NEWS.md | 8 ++++++++ R/functions.R | 4 ++-- R/multe.R | 17 ++++++++++++----- data/fl.rda |binary inst/doc/multe.Rmd | 2 +- inst/doc/multe.pdf |binary man/multe.Rd | 3 +++ tests/testthat/test-EHW-check.R | 4 ++++ vignettes/multe.Rmd | 2 +- 11 files changed, 45 insertions(+), 23 deletions(-)
Title: Resampling Algorithms for 'mlr3' Framework
Description: A supervised learning algorithm inputs a train set,
and outputs a prediction function, which can be used on a test set.
If each data point belongs to a group
(such as geographic region, year, etc), then
how do we know if it is possible to train on one group, and predict
accurately on another group? Cross-validation can be used to determine
the extent to which this is possible, by first assigning fold IDs from
1 to K to all data (possibly using stratification, usually by group
and label). Then we loop over test sets (group/fold combinations),
train sets (same group, other groups, all groups), and compute
test/prediction accuracy for each combination. Comparing
test/prediction accuracy between same and other, we can determine the
extent to which it is possible (perfect if same/other have similar
test accuracy for each group; other is usually somewhat less accurate
than same; other can be just as bad as featureless baseline when the
groups have different patterns).
For more information,
[...truncated...]
Author: Toby Hocking [aut, cre] ,
Michel Lang [ctb] ,
Bernd Bischl [ctb] ,
Jakob Richter [ctb] ,
Patrick Schratz [ctb] ,
Giuseppe Casalicchio [ctb] ,
Stefan Coors [ctb] ,
Quay Au [ctb] ,
Martin Binder [ctb],
Florian Pfisterer [ctb] ,
Raphael Sonabend [ctb] , [...truncated...]
Maintainer: Toby Hocking <toby.hocking@r-project.org>
Diff between mlr3resampling versions 2024.7.3 dated 2024-07-05 and 2024.7.7 dated 2024-07-12
DESCRIPTION | 6 MD5 | 16 - NEWS | 4 build/vignette.rds |binary inst/doc/Newer_resamplers.R | 6 inst/doc/Newer_resamplers.Rmd | 4 inst/doc/Newer_resamplers.html | 400 +++++++++++++++++++---------------------- inst/doc/Older_resamplers.html | 122 +++++------- vignettes/Newer_resamplers.Rmd | 4 9 files changed, 261 insertions(+), 301 deletions(-)
More information about mlr3resampling at CRAN
Permanent link
Title: Nested Cross Validation for the Relaxed Lasso and Other Machine
Learning Models
Description: Cross validation informed Relaxed LASSO, Artificial Neural Network (ANN), gradient boosting machine ('xgboost'), Random Forest ('RandomForestSRC'), Oblique Random Forest ('aorsf'), Recursive Partitioning ('RPART') or step wise regression models are fit. Cross validation leave out samples (leading to nested cross validation) or bootstrap out-of-bag samples are used to evaluate and compare performances between these models with results presented in tabular or graphical means. Calibration plots can also be generated, again based upon (outer nested) cross validation or bootstrap leave out (out of bag) samples.
For some datasets, for example when the design matrix is not of full rank, 'glmnet' may have very long run times when fitting the relaxed lasso model, from our experience when fitting Cox models on data with many predictors and many patients, making it difficult to get solutions from either glmnet() or cv.glmnet(). This may be remedied by using the 'path=TRUE' option when calling [...truncated...]
Author: Walter K Kremers [aut, cre] ,
Nicholas B Larson [ctb]
Maintainer: Walter K Kremers <kremers.walter@mayo.edu>
Diff between glmnetr versions 0.5-1 dated 2024-05-12 and 0.5-2 dated 2024-07-12
glmnetr-0.5-1/glmnetr/R/calplot_240509.R |only glmnetr-0.5-1/glmnetr/R/nested.cis_240510.R |only glmnetr-0.5-1/glmnetr/R/nested.compare_240510.R |only glmnetr-0.5-1/glmnetr/R/nested.glmnetr_240510.R |only glmnetr-0.5-1/glmnetr/R/perform_240510.R |only glmnetr-0.5-1/glmnetr/R/plot.cv.glmnetr_240410.R |only glmnetr-0.5-1/glmnetr/R/plot.perf.glmnetr_240422.R |only glmnetr-0.5-1/glmnetr/R/predict_240510.R |only glmnetr-0.5-1/glmnetr/R/summary.cv.glmnetr_240422.R |only glmnetr-0.5-1/glmnetr/R/summary.nested.glmnetr_240510.R |only glmnetr-0.5-1/glmnetr/R/tools_240423.R |only glmnetr-0.5-1/glmnetr/inst/doc/An_Overview_of_glmnetr_240510.pdf |only glmnetr-0.5-1/glmnetr/inst/doc/An_Overview_of_glmnetr_240510.pdf.asis |only glmnetr-0.5-1/glmnetr/inst/doc/Calibration_240510.pdf |only glmnetr-0.5-1/glmnetr/inst/doc/Calibration_240510.pdf.asis |only glmnetr-0.5-1/glmnetr/inst/doc/Using_ann_tab_cv_240510.pdf |only glmnetr-0.5-1/glmnetr/inst/doc/Using_ann_tab_cv_240510.pdf.asis |only glmnetr-0.5-1/glmnetr/inst/doc/Using_stepreg_240510.pdf |only glmnetr-0.5-1/glmnetr/inst/doc/Using_stepreg_240510.pdf.asis |only glmnetr-0.5-1/glmnetr/vignettes/An_Overview_of_glmnetr_240510.Rmd |only glmnetr-0.5-1/glmnetr/vignettes/An_Overview_of_glmnetr_240510.pdf.asis |only glmnetr-0.5-1/glmnetr/vignettes/Calibration_240510.Rmd |only glmnetr-0.5-1/glmnetr/vignettes/Calibration_240510.pdf.asis |only glmnetr-0.5-1/glmnetr/vignettes/Using_ann_tab_cv_240510.Rmd |only glmnetr-0.5-1/glmnetr/vignettes/Using_ann_tab_cv_240510.pdf.asis |only glmnetr-0.5-1/glmnetr/vignettes/Using_stepreg_240510.Rmd |only glmnetr-0.5-1/glmnetr/vignettes/Using_stepreg_240510.pdf.asis |only glmnetr-0.5-2/glmnetr/DESCRIPTION | 16 - glmnetr-0.5-2/glmnetr/MD5 | 111 +++++----- glmnetr-0.5-2/glmnetr/NAMESPACE | 3 glmnetr-0.5-2/glmnetr/R/calplot_240708.R |only glmnetr-0.5-2/glmnetr/R/nested.cis_240708.R |only glmnetr-0.5-2/glmnetr/R/nested.compare_240708.R |only glmnetr-0.5-2/glmnetr/R/nested.glmnetr_240708.R |only glmnetr-0.5-2/glmnetr/R/perform_240708.R |only glmnetr-0.5-2/glmnetr/R/plot.cv.glmnetr_240708.R |only glmnetr-0.5-2/glmnetr/R/plot.perf.glmnetr_240708.R |only glmnetr-0.5-2/glmnetr/R/predict_240608.R |only glmnetr-0.5-2/glmnetr/R/summary.cv.glmnetr_240608.R |only glmnetr-0.5-2/glmnetr/R/summary.nested.glmnetr_240708.R |only glmnetr-0.5-2/glmnetr/R/tools_240708.R |only glmnetr-0.5-2/glmnetr/build/vignette.rds |binary glmnetr-0.5-2/glmnetr/inst/doc/An_Overview_of_glmnetr_240710.pdf |only glmnetr-0.5-2/glmnetr/inst/doc/An_Overview_of_glmnetr_240710.pdf.asis |only glmnetr-0.5-2/glmnetr/inst/doc/Calibration_240710.pdf |only glmnetr-0.5-2/glmnetr/inst/doc/Calibration_240710.pdf.asis |only glmnetr-0.5-2/glmnetr/inst/doc/Using_ann_tab_cv_240710.pdf |only glmnetr-0.5-2/glmnetr/inst/doc/Using_ann_tab_cv_240710.pdf.asis |only glmnetr-0.5-2/glmnetr/inst/doc/Using_stepreg_240710.pdf |only glmnetr-0.5-2/glmnetr/inst/doc/Using_stepreg_240710.pdf.asis |only glmnetr-0.5-2/glmnetr/man/boot.factor.foldid.Rd |only glmnetr-0.5-2/glmnetr/man/calplot.Rd | 63 +++-- glmnetr-0.5-2/glmnetr/man/cox.sat.dev.Rd | 2 glmnetr-0.5-2/glmnetr/man/devrat_.Rd | 2 glmnetr-0.5-2/glmnetr/man/diff_time.Rd | 2 glmnetr-0.5-2/glmnetr/man/diff_time1.Rd | 2 glmnetr-0.5-2/glmnetr/man/factor.foldid.Rd | 2 glmnetr-0.5-2/glmnetr/man/get.foldid.Rd | 2 glmnetr-0.5-2/glmnetr/man/glmnetr.cis.Rd | 2 glmnetr-0.5-2/glmnetr/man/glmnetr.compcv.Rd | 2 glmnetr-0.5-2/glmnetr/man/glmnetr.simdata.Rd | 2 glmnetr-0.5-2/glmnetr/man/glmnetr_seed.Rd | 2 glmnetr-0.5-2/glmnetr/man/nested.cis.Rd | 2 glmnetr-0.5-2/glmnetr/man/nested.compare.Rd | 8 glmnetr-0.5-2/glmnetr/man/nested.glmnetr.Rd | 61 +++-- glmnetr-0.5-2/glmnetr/man/plot.cv.glmnetr.Rd | 2 glmnetr-0.5-2/glmnetr/man/plot.glmnetr.Rd | 2 glmnetr-0.5-2/glmnetr/man/plot.nested.glmnetr.Rd | 13 - glmnetr-0.5-2/glmnetr/man/plot_perf_glmnetr.Rd | 2 glmnetr-0.5-2/glmnetr/man/predict.cv.glmnetr.Rd | 2 glmnetr-0.5-2/glmnetr/man/predict.glmnetr.Rd | 2 glmnetr-0.5-2/glmnetr/man/predict.nested.glmnetr.Rd | 2 glmnetr-0.5-2/glmnetr/man/print.nested.glmnetr.Rd | 2 glmnetr-0.5-2/glmnetr/man/roundperf.Rd | 6 glmnetr-0.5-2/glmnetr/man/summary.cv.glmnetr.Rd | 2 glmnetr-0.5-2/glmnetr/man/summary.nested.glmnetr.Rd | 7 glmnetr-0.5-2/glmnetr/vignettes/An_Overview_of_glmnetr_240710.Rmd |only glmnetr-0.5-2/glmnetr/vignettes/An_Overview_of_glmnetr_240710.pdf.asis |only glmnetr-0.5-2/glmnetr/vignettes/Calibration_240710.Rmd |only glmnetr-0.5-2/glmnetr/vignettes/Calibration_240710.pdf.asis |only glmnetr-0.5-2/glmnetr/vignettes/Using_ann_tab_cv_240710.Rmd |only glmnetr-0.5-2/glmnetr/vignettes/Using_ann_tab_cv_240710.pdf.asis |only glmnetr-0.5-2/glmnetr/vignettes/Using_stepreg_240710.Rmd |only glmnetr-0.5-2/glmnetr/vignettes/Using_stepreg_240710.pdf.asis |only 84 files changed, 182 insertions(+), 144 deletions(-)
Title: Simple Bootstrap Routines
Description: Simple bootstrap routines.
Author: Roger D. Peng <roger.peng@austin.utexas.edu>
Maintainer: Roger D. Peng <roger.peng@austin.utexas.edu>
Diff between simpleboot versions 1.1-7 dated 2019-02-20 and 1.1-8 dated 2024-07-12
DESCRIPTION | 12 ++++++------ MD5 | 4 ++-- tests/reg-tests.Rout.save | 10 +++++----- 3 files changed, 13 insertions(+), 13 deletions(-)
Title: Spatial Objects of the Czech Republic
Description: Administrative regions and other spatial objects of the Czech Republic.
Author: Jindra Lacko [aut, cre] ,
Nick Bearman [rev]
Maintainer: Jindra Lacko <jindra.lacko@gmail.com>
Diff between RCzechia versions 1.12.0 dated 2023-10-29 and 1.12.2 dated 2024-07-12
DESCRIPTION | 10 +-- MD5 | 103 ++++++++++++++++--------------- NAMESPACE | 1 NEWS.md | 16 ++++ R/RCzechia.R | 24 +++++-- R/casti.R | 4 - R/helpers.R | 2 R/katastry.R |only R/kraje.R | 6 - R/obce_body.R | 4 - R/obce_polygony.R | 4 - R/okresy.R | 4 - R/orp_polygony.R | 6 - R/republika.R | 4 - R/sysdata.rda |binary README.md | 3 build/partial.rdb |binary build/vignette.rds |binary inst/doc/vignette.Rmd | 50 +++++++++------ inst/doc/vignette.html | 123 +++++++++++++++++++++++--------------- man/RCzechia-package.Rd | 38 +++++++++++ man/casti.Rd | 2 man/katastry.Rd |only man/kraje.Rd | 4 - man/obce_body.Rd | 2 man/obce_polygony.Rd | 2 man/okresy.Rd | 2 man/orp_polygony.Rd | 4 - man/republika.Rd | 2 man/set_home.Rd | 2 tests/testthat/test-1-casti.R | 2 tests/testthat/test-1-chr-uzemi.R | 2 tests/testthat/test-1-ctverce.R | 5 + tests/testthat/test-1-geomorfo.R | 16 ++++ tests/testthat/test-1-historie.R | 4 + tests/testthat/test-1-katastr.R |only tests/testthat/test-1-kraje.R | 3 tests/testthat/test-1-lesy.R | 2 tests/testthat/test-1-obce.R | 4 + tests/testthat/test-1-okresy.R | 4 + tests/testthat/test-1-orp.R | 2 tests/testthat/test-1-republika.R | 3 tests/testthat/test-1-transport.R | 5 + tests/testthat/test-1-vodstvo.R | 10 +++ tests/testthat/test-1-volby.R | 6 + tests/testthat/test-1-zip-codes.R | 3 tests/testthat/test-3-integrace.R | 9 ++ vignettes/brno-center-1.png |binary vignettes/census-1.png |binary vignettes/ctverce-1.png |binary vignettes/geocode-1.png |binary vignettes/relief-1.png |binary vignettes/senat-1.png |binary vignettes/vignette.Rmd | 50 +++++++++------ 54 files changed, 378 insertions(+), 174 deletions(-)
Title: Bayesian Meta-Analysis of Diagnostic Test Data
Description: Provides a new class of Bayesian meta-analysis models that incorporates a model for internal and external validity bias. In this way, it is possible to combine studies of diverse quality and different types. For example, we can combine the results of randomized control trials (RCTs) with the results of observational studies (OS).
Author: Pablo Emilio Verde [aut, cre]
Maintainer: Pablo Emilio Verde <pabloemilio.verde@hhu.de>
Diff between bamdit versions 3.4.0 dated 2022-04-04 and 3.4.1 dated 2024-07-12
ChangeLog | 25 ++++++++++++--- DESCRIPTION | 11 +++--- MD5 | 22 +++++++------ NAMESPACE | 2 + R/bamdit-package.R | 45 +++++++++++++++++++++++---- R/metadiag.R | 9 +++-- R/plotcredibility.R |only R/summary.metadiag.R | 2 + data/skin.rda |binary data/skin2.rda |only man/bamdit-package.Rd | 81 +++++++++++++++++++------------------------------ man/metadiag.Rd | 6 +-- man/plotcredibility.Rd |only man/skin2.Rd |only 14 files changed, 123 insertions(+), 80 deletions(-)
Title: Estimation in Optimal Adaptive Two-Stage Designs
Description: Methods to evaluate the performance characteristics of
various point and interval estimators for optimal adaptive two-stage designs as described
in Meis et al. (2024) <doi:10.1002/sim.10020>.
Specifically, this package is written to work with trial designs created by the 'adoptr' package
(Kunzmann et al. (2021) <doi:10.18637/jss.v098.i09>; Pilz et al. (2021) <doi:10.1002/sim.8953>)).
Apart from the a priori evaluation of performance characteristics, this package also allows for the
evaluation of the implemented estimators on real datasets, and it implements methods
to calculate p-values.
Author: Jan Meis [aut, cre] ,
Martin Maechler [cph] .)
Maintainer: Jan Meis <meis@imbi.uni-heidelberg.de>
Diff between adestr versions 0.5.0 dated 2023-09-27 and 1.0.0 dated 2024-07-12
adestr-0.5.0/adestr/man/Normal.Rd |only adestr-0.5.0/adestr/man/Student.Rd |only adestr-0.5.0/adestr/man/TwoStageDesign-class.Rd |only adestr-1.0.0/adestr/DESCRIPTION | 13 adestr-1.0.0/adestr/MD5 | 94 adestr-1.0.0/adestr/NAMESPACE | 6 adestr-1.0.0/adestr/NEWS.md | 14 adestr-1.0.0/adestr/R/adestr_package.R | 2 adestr-1.0.0/adestr/R/analyze.R | 4 adestr-1.0.0/adestr/R/estimators.R | 58 adestr-1.0.0/adestr/R/evaluate_estimator.R | 78 adestr-1.0.0/adestr/R/fastmonoHFC.R | 4 adestr-1.0.0/adestr/R/fisher_information.R | 2 adestr-1.0.0/adestr/R/n2c2_helpers.R | 7 adestr-1.0.0/adestr/R/plot.R | 6 adestr-1.0.0/adestr/R/reference_implementation.R | 10 adestr-1.0.0/adestr/R/twostagedesign_with_cache.R | 113 adestr-1.0.0/adestr/README.md | 43 adestr-1.0.0/adestr/build/partial.rdb |binary adestr-1.0.0/adestr/build/vignette.rds |binary adestr-1.0.0/adestr/inst/CITATION |only adestr-1.0.0/adestr/inst/doc/Introduction.R | 276 + adestr-1.0.0/adestr/inst/doc/Introduction.Rmd | 402 + adestr-1.0.0/adestr/inst/doc/Introduction.html | 2170 +++++++++- adestr-1.0.0/adestr/man/PValue-class.Rd | 3 adestr-1.0.0/adestr/man/TwoStageDesignWithCache.Rd | 32 adestr-1.0.0/adestr/man/analyze.Rd | 2 adestr-1.0.0/adestr/man/c-EstimatorScoreResult-method.Rd | 42 adestr-1.0.0/adestr/man/c-EstimatorScoreResultList-method.Rd | 42 adestr-1.0.0/adestr/man/evaluate_estimator-methods.Rd | 24 adestr-1.0.0/adestr/man/evaluate_estimator.Rd | 2 adestr-1.0.0/adestr/man/evaluate_scenarios_parallel.Rd | 184 adestr-1.0.0/adestr/man/figures/README-unnamed-chunk-4-1.svg |only adestr-1.0.0/adestr/man/get_stagewise_estimators.Rd | 10 adestr-1.0.0/adestr/man/plot-EstimatorScoreResult-method.Rd | 90 adestr-1.0.0/adestr/man/plot-EstimatorScoreResultList-method.Rd | 90 adestr-1.0.0/adestr/man/plot-list-method.Rd | 90 adestr-1.0.0/adestr/man/plot_p.Rd | 116 adestr-1.0.0/adestr/tests/testthat/setup_designs.R | 2 adestr-1.0.0/adestr/tests/testthat/test_LR_boundaries.R | 42 adestr-1.0.0/adestr/tests/testthat/test_against_reference.R | 221 - adestr-1.0.0/adestr/tests/testthat/test_analyze.R | 38 adestr-1.0.0/adestr/tests/testthat/test_densities.R | 1 adestr-1.0.0/adestr/tests/testthat/test_dsmean.R | 64 adestr-1.0.0/adestr/tests/testthat/test_estimators.R |only adestr-1.0.0/adestr/tests/testthat/test_evaluate_estimator.R | 122 adestr-1.0.0/adestr/tests/testthat/test_helpers.R |only adestr-1.0.0/adestr/tests/testthat/test_integrals.R | 68 adestr-1.0.0/adestr/tests/testthat/test_print.R |only adestr-1.0.0/adestr/tests/testthat/test_prior_integral.R | 67 adestr-1.0.0/adestr/tests/testthat/test_pseudo_rao_blackwell.R | 1 adestr-1.0.0/adestr/vignettes/Introduction.Rmd | 402 + 52 files changed, 4295 insertions(+), 762 deletions(-)
Title: Monitoring Rater Reliability
Description: Provides researchers with a simple set of diagnostic tools for monitoring the progress and reliability of raters conducting content coding tasks. Goehring (2024) <https://bengoehring.github.io/improving-content-analysis-tools-for-working-with-undergraduate-research-assistants.pdf> argues that supervisors---especially supervisors of small teams---should utilize computational tools to monitor reliability in real time. As such, this package provides easy-to-use functions for calculating inter-rater reliability statistics and measuring the reliability of one coder compared to the rest of the team.
Author: Benjamin Goehring [aut, cre]
Maintainer: Benjamin Goehring <bengoehr@umich.edu>
Diff between ura versions 1.0.0 dated 2023-09-13 and 1.0.1 dated 2024-07-12
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NEWS.md | 4 +++- R/rater_agreement.R | 2 +- README.md | 18 +++++++++--------- man/ura-package.Rd | 2 +- 6 files changed, 24 insertions(+), 22 deletions(-)
Title: Spatially and Temporally Varying Coefficient Models Using
Generalized Additive Models
Description: A framework for specifying spatially, temporally and spatial-and-temporally varying coefficient models using Generalized Additive Models with Gaussian Process smooths. The smooths are parameterised with location and / or time attributes. Importantly the framework supports the investigation of the presence and nature of any space-time dependencies in the data, allows the user to evaluate different model forms (specifications) and to pick the most probable model or to combine multiple varying coefficient models using Bayesian Model Averaging. For more details see: Brunsdon et al (2023) <doi:10.4230/LIPIcs.GIScience.2023.17>, Comber et al (2023) <doi:10.4230/LIPIcs.GIScience.2023.22> and Comber et al (2024) <doi:10.1080/13658816.2023.2270285>.
Author: Lex Comber [aut, cre],
Paul Harris [ctb],
Chris Brunsdon [ctb]
Maintainer: Lex Comber <a.comber@leeds.ac.uk>
Diff between stgam versions 0.0.1.0 dated 2024-06-25 and 0.0.1.1 dated 2024-07-12
DESCRIPTION | 6 ++-- MD5 | 40 +++++++++++++-------------- NEWS.md | 7 ++++ R/calculate_vc.R | 19 ++++++------ R/data.R | 2 + R/do_bma.R | 24 ++++++++-------- R/evaluate_models.R | 18 ++++++------ R/gam_model_probs.R | 6 ++-- inst/doc/space-time-gam-intro.R | 7 ++-- inst/doc/space-time-gam-intro.Rmd | 9 +++--- inst/doc/space-time-gam-intro.html | 18 ++++++------ inst/doc/space-time-gam-model-probs-BMA.R | 8 ++--- inst/doc/space-time-gam-model-probs-BMA.Rmd | 10 +++--- inst/doc/space-time-gam-model-probs-BMA.html | 26 ++++++++--------- man/calculate_vcs.Rd | 13 ++++---- man/do_bma.Rd | 18 ++++++------ man/evaluate_models.Rd | 8 ++--- man/gam_model_probs.Rd | 6 ++-- man/productivity.Rd | 2 + vignettes/space-time-gam-intro.Rmd | 9 +++--- vignettes/space-time-gam-model-probs-BMA.Rmd | 10 +++--- 21 files changed, 141 insertions(+), 125 deletions(-)
Title: Interaction Statistics
Description: Fast, model-agnostic implementation of different H-statistics
introduced by Jerome H. Friedman and Bogdan E. Popescu (2008)
<doi:10.1214/07-AOAS148>. These statistics quantify interaction
strength per feature, feature pair, and feature triple. The package
supports multi-output predictions and can account for case weights.
In addition, several variants of the original statistics are provided.
The shape of the interactions can be explored through partial
dependence plots or individual conditional expectation plots. 'DALEX'
explainers, meta learners ('mlr3', 'tidymodels', 'caret') and most
other models work out-of-the-box.
Author: Michael Mayer [aut, cre] ,
Przemyslaw Biecek [ctb]
Maintainer: Michael Mayer <mayermichael79@gmail.com>
Diff between hstats versions 1.1.2 dated 2024-02-03 and 1.2.0 dated 2024-07-12
DESCRIPTION | 25 ++++--- MD5 | 42 ++++++------ NEWS.md | 29 ++++++-- R/average_loss.R | 15 +--- R/hstats.R | 2 R/ice.R | 1 R/losses.R | 113 +++++++++++++++++----------------- R/pd_raw.R | 5 - R/perm_importance.R | 13 ++- R/utils_calculate.R | 108 ++------------------------------ R/utils_input.R | 34 ++++++---- README.md | 85 +++++++++---------------- man/average_loss.Rd | 12 --- man/perm_importance.Rd | 15 +--- tests/testthat/test_average_loss.R | 42 ------------ tests/testthat/test_calculate.R | 100 ------------------------------ tests/testthat/test_hstats.R | 6 - tests/testthat/test_ice.R | 9 -- tests/testthat/test_input.R | 7 -- tests/testthat/test_losses.R | 30 --------- tests/testthat/test_partial_dep.R | 8 -- tests/testthat/test_perm_importance.R | 34 ---------- 22 files changed, 209 insertions(+), 526 deletions(-)
Title: Help to Fit of a Parametric Distribution to Non-Censored or
Censored Data
Description: Extends the fitdistr() function (of the MASS package) with several functions
to help the fit of a parametric distribution to non-censored or censored data.
Censored data may contain left censored, right censored and interval censored values,
with several lower and upper bounds. In addition to maximum likelihood estimation (MLE),
the package provides moment matching (MME), quantile matching (QME), maximum goodness-of-fit
estimation (MGE) and maximum spacing estimation (MSE) methods (available only for
non-censored data). Weighted versions of MLE, MME, QME and MSE are available. See e.g.
Casella & Berger (2002), Statistical inference, Pacific Grove, for a general introduction
to parametric estimation.
Author: Marie-Laure Delignette-Muller [aut]
,
Christophe Dutang [aut] ,
Regis Pouillot [ctb],
Jean-Baptiste Denis [ctb],
Aurelie Siberchicot [aut, cre]
Maintainer: Aurelie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
Diff between fitdistrplus versions 1.1-11 dated 2023-04-25 and 1.2-1 dated 2024-07-12
DESCRIPTION | 21 MD5 | 217 +++-- NAMESPACE | 21 NEWS.md | 183 ++-- R/AIC.R |only R/BIC.R |only R/CIcdfplot.R | 33 R/bootdist-graph.R | 27 R/bootdist.R | 454 +++++++---- R/bootdistcens.R | 418 ++++++---- R/cdfcomp.R | 45 - R/cdfcompcens.R | 40 - R/coef.R | 26 R/denscomp.R | 45 - R/descdist.R | 277 +++---- R/detectbound.R | 2 R/fitdist.R | 578 +++++++-------- R/fitdistcens.R | 343 ++++----- R/gofstat.R | 716 ++++++++++-------- R/logLik-surface.R | 38 R/logLik.R | 24 R/mgedist.R | 654 ++++++++--------- R/mledist.R | 698 +++++++++--------- R/mmedist.R | 888 +++++++++++++---------- R/msedist.R | 688 +++++++++--------- R/plotdist.R | 502 ++++++------- R/plotdistcens.R | 42 - R/ppcomp.R | 16 R/ppcompcens.R | 14 R/qmedist.R | 505 ++++++------- R/qqcomp.R | 19 R/qqcompcens.R | 14 R/quantiles.R | 352 ++++----- R/util-Turnbull-intervals.R | 2 R/util-cens2pseudo.R | 128 +-- R/util-check-NAInfNan.R |only R/util-checkparam.R | 19 R/util-checkparamlist.R | 19 R/util-getparam.R | 20 R/util-manageparam.R | 36 R/util-mledist-vcov.R |only R/util-mmedist-vcov.R |only R/util-npmle.R | 1 R/util-startarg.R | 589 +++++++++++++-- R/util-testdensity.R | 19 R/util-wtdstat.R | 1 R/vcov.R | 13 README.md | 47 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/FAQ.R | 331 +++++++- inst/doc/FAQ.Rmd | 368 ++++++++- inst/doc/FAQ.html | 1027 +++++++++++++++++---------- inst/doc/Optimalgo.R | 94 +- inst/doc/Optimalgo.Rmd | 55 - inst/doc/Optimalgo.html | 258 +++--- inst/doc/fitdistrplus_vignette.R | 2 inst/doc/fitdistrplus_vignette.Rmd | 2 inst/doc/fitdistrplus_vignette.html | 152 ++- inst/doc/starting-values.R |only inst/doc/starting-values.Rmd |only inst/doc/starting-values.html |only man/CIcdfplot.Rd | 2 man/Surv2fitdistcens.Rd | 2 man/bootdist.Rd | 41 - man/bootdistcens.Rd | 32 man/descdist.Rd | 22 man/detectbound.Rd | 2 man/endosulfan.Rd | 6 man/fitdist.Rd | 37 man/fitdistcens.Rd | 29 man/fitdistrplus.Rd | 9 man/gofstat.Rd | 66 + man/graphcomp.Rd | 7 man/graphcompcens.Rd | 2 man/logLik-plot.Rd | 2 man/logLik-surface.Rd | 2 man/mgedist.Rd | 9 man/mledist.Rd | 7 man/mmedist.Rd | 23 man/msedist.Rd | 12 man/plotdist.Rd | 2 man/plotdistcens.Rd | 18 man/prefit.Rd | 2 man/qmedist.Rd | 11 man/quantile.Rd | 2 man/toxocara.Rd | 2 tests/t-bootdist.R | 20 tests/t-cdfcomp.R | 4 tests/t-denscomp.R | 10 tests/t-fitdist-hessianpb.R |only tests/t-fitdist-test-arguments.R |only tests/t-fitdist.R | 25 tests/t-fitdistcens.R | 24 tests/t-gofstat.R | 17 tests/t-logLik-vcov-coef.R | 9 tests/t-mgedist.R | 7 tests/t-mledist-asymptotic-vcov.R |only tests/t-mledist-cens.R | 126 +-- tests/t-mledist-nocens.R | 10 tests/t-mmedist-asymptotic-vcov.R |only tests/t-mmedist.R | 54 - tests/t-msedist.R | 12 tests/t-plotdist.R | 4 tests/t-plotdistcens.R | 122 +-- tests/t-ppcomp.R | 3 tests/t-qmedist.R | 10 tests/t-qqcomp.R | 3 tests/t-starting-value-scale-rate.R |only tests/t-startingvalues-fellerpareto-family.R |only tests/t-startingvalues-invtrgamma-family.R |only tests/t-startingvalues-othercont-family.R |only tests/t-startingvalues-trgamma-family.R |only tests/t-startingvalues-zeromod-family.R |only tests/t-startingvalues-zerotrunc-family.R |only tests/t-util-mmedist-vcov.R |only vignettes/FAQ.Rmd | 368 ++++++++- vignettes/Optimalgo.Rmd | 55 - vignettes/fitdistrplus_vignette.Rmd | 2 vignettes/starting-values.Rmd |only 120 files changed, 7484 insertions(+), 4833 deletions(-)
Title: A 'DuckDB'-Backed Version of 'dplyr'
Description: A drop-in replacement for 'dplyr', powered by 'DuckDB' for performance.
Also defines a set of generics that provide a low-level
implementer's interface for the high-level user interface of 'dplyr'.
Author: Hannes Muehleisen [aut] ,
Kirill Mueller [aut, cre] ,
Posit Software, PBC [cph, fnd]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between duckplyr versions 0.4.0 dated 2024-05-21 and 0.4.1 dated 2024-07-12
duckplyr-0.4.0/duckplyr/R/io.R |only duckplyr-0.4.1/duckplyr/DESCRIPTION | 10 duckplyr-0.4.1/duckplyr/MD5 | 69 +- duckplyr-0.4.1/duckplyr/NAMESPACE | 8 duckplyr-0.4.1/duckplyr/NEWS.md | 20 duckplyr-0.4.1/duckplyr/R/arrange.R | 7 duckplyr-0.4.1/duckplyr/R/as_duckplyr_df.R | 13 duckplyr-0.4.1/duckplyr/R/as_duckplyr_tibble.R |only duckplyr-0.4.1/duckplyr/R/construct_constant.R |only duckplyr-0.4.1/duckplyr/R/construct_function.R |only duckplyr-0.4.1/duckplyr/R/construct_reference.R |only duckplyr-0.4.1/duckplyr/R/construct_window.R |only duckplyr-0.4.1/duckplyr/R/dplyr.R | 1 duckplyr-0.4.1/duckplyr/R/duckplyr-package.R | 3 duckplyr-0.4.1/duckplyr/R/fallback.R | 25 - duckplyr-0.4.1/duckplyr/R/handle_desc.R |only duckplyr-0.4.1/duckplyr/R/io-.R |only duckplyr-0.4.1/duckplyr/R/io-csv.R | 4 duckplyr-0.4.1/duckplyr/R/join.R | 39 + duckplyr-0.4.1/duckplyr/R/join_ptype_common.R |only duckplyr-0.4.1/duckplyr/R/relational-duckdb.R | 8 duckplyr-0.4.1/duckplyr/R/relational-expr.R | 2 duckplyr-0.4.1/duckplyr/R/relational-rel.R | 8 duckplyr-0.4.1/duckplyr/R/relational.R | 250 ---------- duckplyr-0.4.1/duckplyr/R/translate.R |only duckplyr-0.4.1/duckplyr/README.md | 43 + duckplyr-0.4.1/duckplyr/man/as_duckplyr_df.Rd | 21 duckplyr-0.4.1/duckplyr/man/df_from_file.Rd | 67 +- duckplyr-0.4.1/duckplyr/man/new_relational.Rd | 7 duckplyr-0.4.1/duckplyr/tests/testthat/_snaps/fallback.md | 2 duckplyr-0.4.1/duckplyr/tests/testthat/_snaps/join.md | 11 duckplyr-0.4.1/duckplyr/tests/testthat/_snaps/relational.md | 16 duckplyr-0.4.1/duckplyr/tests/testthat/_snaps/translate.md |only duckplyr-0.4.1/duckplyr/tests/testthat/test-as_duckplyr_tibble.R |only duckplyr-0.4.1/duckplyr/tests/testthat/test-demo.R | 5 duckplyr-0.4.1/duckplyr/tests/testthat/test-dplyr.R | 3 duckplyr-0.4.1/duckplyr/tests/testthat/test-io-csv.R | 2 duckplyr-0.4.1/duckplyr/tests/testthat/test-io-parquet.R | 4 duckplyr-0.4.1/duckplyr/tests/testthat/test-join.R | 2 duckplyr-0.4.1/duckplyr/tests/testthat/test-rel_api.R | 45 - duckplyr-0.4.1/duckplyr/tests/testthat/test-relational.R | 20 duckplyr-0.4.1/duckplyr/tests/testthat/test-translate.R |only 42 files changed, 288 insertions(+), 427 deletions(-)
Title: Data-Driven Locally Weighted Regression for Trend and
Seasonality in TS
Description: Various methods for the identification of trend and seasonal
components in time series (TS) are provided. Among them is a data-driven locally
weighted regression approach with automatically selected bandwidth for
equidistant short-memory time series. The approach is a
combination / extension of the algorithms by
Feng (2013) <doi:10.1080/02664763.2012.740626> and Feng, Y., Gries, T.,
and Fritz, M. (2020) <doi:10.1080/10485252.2020.1759598> and a brief
description of this new method is provided in the package documentation.
Furthermore, the package allows its users to apply the base model of the
Berlin procedure, version 4.1, as described in Speth (2004) <https://www.destatis.de/DE/Methoden/Saisonbereinigung/BV41-methodenbericht-Heft3_2004.pdf?__blob=publicationFile>.
Permission to include this procedure was kindly provided by the Federal
Statistical Office of Germany.
Author: Yuanhua Feng [aut] ,
Dominik Schulz [aut, cre]
Maintainer: Dominik Schulz <dominik.schulz@uni-paderborn.de>
Diff between deseats versions 1.0.0 dated 2023-11-08 and 1.1.0 dated 2024-07-12
DESCRIPTION | 11 - MD5 | 68 +++++---- NAMESPACE | 5 NEWS.md |only R/RcppExports.R | 28 +-- R/arima_no_warn.R | 4 R/fitting_functions.R | 100 ++++++++++---- R/forecasting_functions.R | 32 +++- R/helper_functions.R | 27 ++- R/linear_filters.R | 4 R/seasonplot.R |only R/ts_conversion.R | 2 README.md | 14 - man/ENERGY.Rd | 56 +++---- man/GDP.Rd | 54 +++---- man/HOUSES.Rd | 54 +++---- man/RAINFALL.Rd | 52 +++---- man/RETAIL.Rd | 56 +++---- man/arma_to_ar.Rd | 2 man/arma_to_ma.Rd | 2 man/deseats.Rd | 28 +++ man/figures/README-example-1.png |binary man/figures/README-example2-1.png |binary man/figures/README-example4-1.png |binary man/figures/README-example5-1.png |binary man/llin_decomp.Rd | 162 +++++++++++------------ man/read_ts.Rd | 2 man/s_semiarma.Rd | 27 +++ man/seasonplot.Rd |only man/seasonplot_gg.Rd |only man/select_bwidth.Rd | 23 ++- src/LinearFilters.cpp | 6 src/RcppExports.cpp | 73 ++++++---- src/bootCast.cpp | 12 - src/deseatsCpp.cpp | 53 ++++--- tests/testthat/test-Cpp_arma_related_functions.R | 29 ++-- tests/testthat/test-linear_filters.R | 24 +-- 37 files changed, 587 insertions(+), 423 deletions(-)
Title: A 'Shiny' App for Weibull Analysis from 'WeibullR'
Description: A 'Shiny' web application for life data analysis that depends on 'WeibullR' by David Silkworth and Jurgen Symynck (2022)
<https://CRAN.R-project.org/package=WeibullR>, an R package for Weibull analysis.
Author: Paul Govan [aut, cre, cph]
Maintainer: Paul Govan <paul.govan2@gmail.com>
Diff between WeibullR.shiny versions 0.2.0 dated 2023-10-18 and 0.2.1 dated 2024-07-12
DESCRIPTION | 16 +++++++++------- MD5 | 4 ++-- inst/CITATION | 2 +- 3 files changed, 12 insertions(+), 10 deletions(-)
More information about WeibullR.shiny at CRAN
Permanent link
Title: Identify Relevant Clinical Codes and Evaluate Their Use
Description: Generate a candidate code list for the Observational Medical Outcomes Partnership (OMOP) common data model based on string matching. For a given search strategy, a candidate code list will be returned.
Author: Edward Burn [aut, cre] ,
Marti Catala [ctb] ,
Xihang Chen [ctb] ,
Mike Du [ctb] ,
Danielle Newby [ctb]
Maintainer: Edward Burn <edward.burn@ndorms.ox.ac.uk>
Diff between CodelistGenerator versions 3.0 dated 2024-05-31 and 3.1.0 dated 2024-07-12
CodelistGenerator-3.0/CodelistGenerator/man/achillesCodeUse.Rd |only CodelistGenerator-3.0/CodelistGenerator/man/figures/hexsticker.png |only CodelistGenerator-3.0/CodelistGenerator/man/findOrphanCodes.Rd |only CodelistGenerator-3.1.0/CodelistGenerator/DESCRIPTION | 25 CodelistGenerator-3.1.0/CodelistGenerator/MD5 | 146 CodelistGenerator-3.1.0/CodelistGenerator/NAMESPACE | 10 CodelistGenerator-3.1.0/CodelistGenerator/NEWS.md | 3 CodelistGenerator-3.1.0/CodelistGenerator/R/CodelistFromCodelistWithDetails.R |only CodelistGenerator-3.1.0/CodelistGenerator/R/codesFromConceptSet.R | 91 CodelistGenerator-3.1.0/CodelistGenerator/R/codesInUse.R | 192 CodelistGenerator-3.1.0/CodelistGenerator/R/data.R |only CodelistGenerator-3.1.0/CodelistGenerator/R/drugCodes.R | 156 CodelistGenerator-3.1.0/CodelistGenerator/R/getDoseUnit.R |only CodelistGenerator-3.1.0/CodelistGenerator/R/getICD10StandardCodes.R | 28 CodelistGenerator-3.1.0/CodelistGenerator/R/getRoutes.R |only CodelistGenerator-3.1.0/CodelistGenerator/R/mockVocabRef.R | 6 CodelistGenerator-3.1.0/CodelistGenerator/R/runSearch.R | 5 CodelistGenerator-3.1.0/CodelistGenerator/R/stratifyByConcept.R |only CodelistGenerator-3.1.0/CodelistGenerator/R/stratifyByDoseUnit.R |only CodelistGenerator-3.1.0/CodelistGenerator/R/stratifyByRoute.R |only CodelistGenerator-3.1.0/CodelistGenerator/R/subsetOnDoseUnit.R |only CodelistGenerator-3.1.0/CodelistGenerator/R/subsetOnRouteCategory.R |only CodelistGenerator-3.1.0/CodelistGenerator/R/summariseAchillesCodeUse.R | 38 CodelistGenerator-3.1.0/CodelistGenerator/R/summariseCodeUse.R | 43 CodelistGenerator-3.1.0/CodelistGenerator/R/summariseOrphanCodes.R | 451 CodelistGenerator-3.1.0/CodelistGenerator/R/tableAchillesCodeUse.R | 57 CodelistGenerator-3.1.0/CodelistGenerator/R/tableCodeUse.R | 22 CodelistGenerator-3.1.0/CodelistGenerator/R/vocabUtilities.R | 8 CodelistGenerator-3.1.0/CodelistGenerator/README.md | 57 CodelistGenerator-3.1.0/CodelistGenerator/build/vignette.rds |binary CodelistGenerator-3.1.0/CodelistGenerator/data |only CodelistGenerator-3.1.0/CodelistGenerator/inst/doc/a01_Introduction_to_CodelistGenerator.html | 2 CodelistGenerator-3.1.0/CodelistGenerator/inst/doc/a02_Candidate_codes_OA.html | 2 CodelistGenerator-3.1.0/CodelistGenerator/inst/doc/a03_Options_for_CodelistGenerator.Rmd | 434 CodelistGenerator-3.1.0/CodelistGenerator/inst/doc/a03_Options_for_CodelistGenerator.html | 18 CodelistGenerator-3.1.0/CodelistGenerator/inst/doc/a04_Vocab_based_codelists.R | 30 CodelistGenerator-3.1.0/CodelistGenerator/inst/doc/a04_Vocab_based_codelists.Rmd | 32 CodelistGenerator-3.1.0/CodelistGenerator/inst/doc/a04_Vocab_based_codelists.html | 156 CodelistGenerator-3.1.0/CodelistGenerator/inst/not_all_concept_sets/cohort_def.json | 5706 +++++----- CodelistGenerator-3.1.0/CodelistGenerator/man/CodelistGenerator-package.Rd | 6 CodelistGenerator-3.1.0/CodelistGenerator/man/codesFromCohort.Rd | 7 CodelistGenerator-3.1.0/CodelistGenerator/man/codesFromConceptSet.Rd | 7 CodelistGenerator-3.1.0/CodelistGenerator/man/codesInUse.Rd | 7 CodelistGenerator-3.1.0/CodelistGenerator/man/doseFormToRoute.Rd |only CodelistGenerator-3.1.0/CodelistGenerator/man/figures/logo.png |only CodelistGenerator-3.1.0/CodelistGenerator/man/getATCCodes.Rd | 23 CodelistGenerator-3.1.0/CodelistGenerator/man/getConceptClassId.Rd | 60 CodelistGenerator-3.1.0/CodelistGenerator/man/getDoseUnit.Rd |only CodelistGenerator-3.1.0/CodelistGenerator/man/getDrugIngredientCodes.Rd | 23 CodelistGenerator-3.1.0/CodelistGenerator/man/getICD10StandardCodes.Rd | 7 CodelistGenerator-3.1.0/CodelistGenerator/man/getRouteCategories.Rd |only CodelistGenerator-3.1.0/CodelistGenerator/man/restrictToCodesInUse.Rd | 11 CodelistGenerator-3.1.0/CodelistGenerator/man/sourceCodesInUse.Rd | 4 CodelistGenerator-3.1.0/CodelistGenerator/man/stratifyByConcept.Rd |only CodelistGenerator-3.1.0/CodelistGenerator/man/stratifyByDoseUnit.Rd |only CodelistGenerator-3.1.0/CodelistGenerator/man/stratifyByRouteCategory.Rd |only CodelistGenerator-3.1.0/CodelistGenerator/man/subsetOnDoseUnit.Rd |only CodelistGenerator-3.1.0/CodelistGenerator/man/subsetOnRouteCategory.Rd |only CodelistGenerator-3.1.0/CodelistGenerator/man/subsetToCodesInUse.Rd |only CodelistGenerator-3.1.0/CodelistGenerator/man/summariseOrphanCodes.Rd | 54 CodelistGenerator-3.1.0/CodelistGenerator/man/tableAchillesCodeUse.Rd | 4 CodelistGenerator-3.1.0/CodelistGenerator/man/tableCodeUse.Rd | 4 CodelistGenerator-3.1.0/CodelistGenerator/man/tableCohortCodeUse.Rd | 4 CodelistGenerator-3.1.0/CodelistGenerator/man/tableOrphanCodes.Rd | 10 CodelistGenerator-3.1.0/CodelistGenerator/tests/testthat/test-codesFrom.R | 44 CodelistGenerator-3.1.0/CodelistGenerator/tests/testthat/test-codesInUse.R | 10 CodelistGenerator-3.1.0/CodelistGenerator/tests/testthat/test-compareCodelists.R | 254 CodelistGenerator-3.1.0/CodelistGenerator/tests/testthat/test-data.R |only CodelistGenerator-3.1.0/CodelistGenerator/tests/testthat/test-dbms.R | 146 CodelistGenerator-3.1.0/CodelistGenerator/tests/testthat/test-drugCodes.R | 646 + CodelistGenerator-3.1.0/CodelistGenerator/tests/testthat/test-findUnmappedCodes.R | 1 CodelistGenerator-3.1.0/CodelistGenerator/tests/testthat/test-getCandidateCodes.R | 668 - CodelistGenerator-3.1.0/CodelistGenerator/tests/testthat/test-getDoseUnit.R |only CodelistGenerator-3.1.0/CodelistGenerator/tests/testthat/test-getICD10StandardCodes.R | 14 CodelistGenerator-3.1.0/CodelistGenerator/tests/testthat/test-getMappings.R | 148 CodelistGenerator-3.1.0/CodelistGenerator/tests/testthat/test-getRouteCategories.R |only CodelistGenerator-3.1.0/CodelistGenerator/tests/testthat/test-mockVocabRef.R | 26 CodelistGenerator-3.1.0/CodelistGenerator/tests/testthat/test-restrictToCodesInUse.R |only CodelistGenerator-3.1.0/CodelistGenerator/tests/testthat/test-stratifyByConcept.R |only CodelistGenerator-3.1.0/CodelistGenerator/tests/testthat/test-stratifyByDoseUnit.R |only CodelistGenerator-3.1.0/CodelistGenerator/tests/testthat/test-stratifyByRouteCategory.R |only CodelistGenerator-3.1.0/CodelistGenerator/tests/testthat/test-subsetOnDoseUnit.R |only CodelistGenerator-3.1.0/CodelistGenerator/tests/testthat/test-subsetOnRouteCategory.R |only CodelistGenerator-3.1.0/CodelistGenerator/tests/testthat/test-summariseCodeUse.R | 4 CodelistGenerator-3.1.0/CodelistGenerator/tests/testthat/test-summariseOrphanCodes.R | 119 CodelistGenerator-3.1.0/CodelistGenerator/tests/testthat/test-tableAchillesCodeUse.R | 142 CodelistGenerator-3.1.0/CodelistGenerator/tests/testthat/test-tableCodeUse.R | 19 CodelistGenerator-3.1.0/CodelistGenerator/tests/testthat/test-vocabUtilities.R | 2 CodelistGenerator-3.1.0/CodelistGenerator/vignettes/a03_Options_for_CodelistGenerator.Rmd | 434 CodelistGenerator-3.1.0/CodelistGenerator/vignettes/a04_Vocab_based_codelists.Rmd | 32 90 files changed, 5747 insertions(+), 4911 deletions(-)
More information about CodelistGenerator at CRAN
Permanent link
Title: Bayesian Network Modeling and Analysis
Description: A "Shiny"" web application for creating interactive Bayesian Network models,
learning the structure and parameters of Bayesian networks, and utilities for classic
network analysis.
Author: Paul Govan [aut, cre, cph]
Maintainer: Paul Govan <paul.govan2@gmail.com>
Diff between BayesianNetwork versions 0.3 dated 2023-06-26 and 0.3.2 dated 2024-07-12
BayesianNetwork-0.3.2/BayesianNetwork/DESCRIPTION | 15 +++--- BayesianNetwork-0.3.2/BayesianNetwork/MD5 | 25 +++------- BayesianNetwork-0.3.2/BayesianNetwork/NEWS.md | 6 ++ BayesianNetwork-0.3.2/BayesianNetwork/README.md |only BayesianNetwork-0.3.2/BayesianNetwork/inst/CITATION |only BayesianNetwork-0.3.2/BayesianNetwork/inst/images/Measures.PNG |only BayesianNetwork-0.3.2/BayesianNetwork/inst/images/Parameters.PNG |only BayesianNetwork-0.3.2/BayesianNetwork/inst/images/Simulation.PNG |only BayesianNetwork-0.3.2/BayesianNetwork/inst/images/Structure.PNG |only BayesianNetwork-0.3.2/BayesianNetwork/man/figures |only BayesianNetwork-0.3/BayesianNetwork/inst/bn/tests |only BayesianNetwork-0.3/BayesianNetwork/inst/images/Measures.png |only BayesianNetwork-0.3/BayesianNetwork/inst/images/Parameters.png |only BayesianNetwork-0.3/BayesianNetwork/inst/images/Simulation.png |only BayesianNetwork-0.3/BayesianNetwork/inst/images/Structure.png |only 15 files changed, 22 insertions(+), 24 deletions(-)
More information about BayesianNetwork at CRAN
Permanent link