Title: Sparse-Group SLOPE: Adaptive Bi-Level Selection with FDR Control
Description: Implementation of Sparse-group SLOPE (SGS) (Feser and Evangelou (2023) <doi:10.48550/arXiv.2305.09467>) models. Linear and logistic regression models are supported, both of which can be fit using k-fold cross-validation. Dense and sparse input matrices are supported. In addition, a general adaptive three operator splitting (ATOS) implementation is provided. Group SLOPE (gSLOPE) (Brzyski et al. (2019) <doi:10.1080/01621459.2017.1411269>) models are also implemented. Both gSLOPE and SGS are available with strong screening rules (Feser and Evangelou (2024) <doi:10.48550/arXiv.2405.15357>) for computational speed-up.
Author: Fabio Feser [aut, cre] ,
Marina Evangelou [aut]
Maintainer: Fabio Feser <ff120@ic.ac.uk>
Diff between sgs versions 0.1.1 dated 2023-08-22 and 0.2.0 dated 2024-07-13
sgs-0.1.1/sgs/R/generate_penalties.R |only sgs-0.1.1/sgs/R/toy_data_gen.R |only sgs-0.1.1/sgs/man/generate_penalties.Rd |only sgs-0.1.1/sgs/man/generate_toy_data.Rd |only sgs-0.1.1/sgs/man/plot.sgs_cv.Rd |only sgs-0.2.0/sgs/DESCRIPTION | 14 sgs-0.2.0/sgs/MD5 | 97 + sgs-0.2.0/sgs/NAMESPACE | 20 sgs-0.2.0/sgs/R/RcppExports.R | 10 sgs-0.2.0/sgs/R/as_sgs.R | 36 sgs-0.2.0/sgs/R/atos.R | 99 - sgs-0.2.0/sgs/R/coef.R |only sgs-0.2.0/sgs/R/fit_gslope.R |only sgs-0.2.0/sgs/R/fit_gslope_cv.R |only sgs-0.2.0/sgs/R/fit_sgs.R | 444 +------- sgs-0.2.0/sgs/R/fit_sgs_cv.R | 157 -- sgs-0.2.0/sgs/R/fitting_code.R |only sgs-0.2.0/sgs/R/gen_pens.R |only sgs-0.2.0/sgs/R/gen_toy_data.R |only sgs-0.2.0/sgs/R/global_wrapper_code.R |only sgs-0.2.0/sgs/R/plot.R | 50 sgs-0.2.0/sgs/R/predict.R | 94 + sgs-0.2.0/sgs/R/print.R | 29 sgs-0.2.0/sgs/R/run_algorithm.R | 102 - sgs-0.2.0/sgs/R/scaled_sgs.R | 80 - sgs-0.2.0/sgs/R/screen.R |only sgs-0.2.0/sgs/R/sgs-package.R | 1 sgs-0.2.0/sgs/R/utils.R | 1269 ++++++++++++----------- sgs-0.2.0/sgs/README.md | 39 sgs-0.2.0/sgs/build/partial.rdb |only sgs-0.2.0/sgs/build/vignette.rds |binary sgs-0.2.0/sgs/inst/CITATION |only sgs-0.2.0/sgs/inst/doc/reproducible_example.R | 63 - sgs-0.2.0/sgs/inst/doc/reproducible_example.Rmd | 370 +++--- sgs-0.2.0/sgs/inst/doc/reproducible_example.html | 779 +++++++++++--- sgs-0.2.0/sgs/man/arma_mv.Rd | 38 sgs-0.2.0/sgs/man/arma_sparse.Rd |only sgs-0.2.0/sgs/man/as_sgs.Rd | 25 sgs-0.2.0/sgs/man/atos.Rd | 34 sgs-0.2.0/sgs/man/coef.sgs.Rd |only sgs-0.2.0/sgs/man/figures/README-gslope-ex.avif |only sgs-0.2.0/sgs/man/figures/README-sgs-ex.avif |only sgs-0.2.0/sgs/man/fit_gslope.Rd |only sgs-0.2.0/sgs/man/fit_gslope_cv.Rd |only sgs-0.2.0/sgs/man/fit_sgs.Rd | 78 - sgs-0.2.0/sgs/man/fit_sgs_cv.Rd | 80 - sgs-0.2.0/sgs/man/gen_pens.Rd |only sgs-0.2.0/sgs/man/gen_toy_data.Rd |only sgs-0.2.0/sgs/man/plot.sgs.Rd |only sgs-0.2.0/sgs/man/predict.sgs.Rd | 29 sgs-0.2.0/sgs/man/print.sgs.Rd | 23 sgs-0.2.0/sgs/man/scaled_sgs.Rd | 27 sgs-0.2.0/sgs/man/sgs-package.Rd | 4 sgs-0.2.0/sgs/src/RcppExports.cpp | 13 sgs-0.2.0/sgs/src/arma_sparse.cpp |only sgs-0.2.0/sgs/tests/testthat/test-gglasso.R | 8 sgs-0.2.0/sgs/tests/testthat/test-grpslope.R |only sgs-0.2.0/sgs/tests/testthat/test-lasso.R | 10 sgs-0.2.0/sgs/tests/testthat/test-ols.R | 4 sgs-0.2.0/sgs/tests/testthat/test-screen.R |only sgs-0.2.0/sgs/tests/testthat/test-sgl.R | 12 sgs-0.2.0/sgs/tests/testthat/test-slope.R | 32 sgs-0.2.0/sgs/vignettes/reproducible_example.Rmd | 370 +++--- 63 files changed, 2575 insertions(+), 1965 deletions(-)
Title: Methods for Colour Vectors and Colour Palettes
Description: Provides a comprehensive library for colour vectors and colour
palettes using a new family of colour classes (palettes_colour and
palettes_palette) that always print as hex codes with colour previews.
Capabilities include: formatting, casting and coercion, extraction and
updating of components, plotting, colour mixing arithmetic, and colour
interpolation.
Author: Michael McCarthy [aut, cre, cph]
Maintainer: Michael McCarthy <m.mccarthy1624@gmail.com>
Diff between palettes versions 0.2.0 dated 2024-02-05 and 0.2.1 dated 2024-07-13
DESCRIPTION | 14 - MD5 | 22 - NEWS.md | 4 R/ggplot2-scales.R | 3 R/sysdata.rda |binary README.md | 2 inst/doc/ggplot2.html | 8 inst/doc/gt.R | 4 inst/doc/gt.Rmd | 4 inst/doc/gt.html | 359 ++++++++++++++++---------------- tests/testthat/_snaps/ggplot2-scales.md | 4 vignettes/gt.Rmd | 4 12 files changed, 227 insertions(+), 201 deletions(-)
Title: Download and Parse Public Data Released by B3 Exchange
Description: Download and parse public files released by B3 and convert them
into useful formats and data structures common to data analysis
practitioners.
Author: Wilson Freitas [aut, cre],
Marcelo Perlin [aut]
Maintainer: Wilson Freitas <wilson.freitas@gmail.com>
Diff between rb3 versions 0.0.10 dated 2023-04-14 and 0.0.11 dated 2024-07-13
rb3-0.0.10/rb3/R/scraper-cdi.R |only rb3-0.0.10/rb3/inst/extdata/templates/CDIIDI.yaml |only rb3-0.0.10/rb3/man/cdi-idi.Rd |only rb3-0.0.10/rb3/tests/fixtures/CDIIDI.yml |only rb3-0.0.10/rb3/tests/testthat/test-cdi.R |only rb3-0.0.10/rb3/tests/testthat/test-cdiidi.R |only rb3-0.0.11/rb3/DESCRIPTION | 12 rb3-0.0.11/rb3/MD5 | 248 rb3-0.0.11/rb3/NAMESPACE | 272 rb3-0.0.11/rb3/NEWS.md | 210 rb3-0.0.11/rb3/R/addin-display-template.R | 154 rb3-0.0.11/rb3/R/addin-show-templates.R | 72 rb3-0.0.11/rb3/R/convert_to.R | 72 rb3-0.0.11/rb3/R/download-data.R | 194 rb3-0.0.11/rb3/R/downloaders.R | 402 rb3-0.0.11/rb3/R/fields.R | 194 rb3-0.0.11/rb3/R/file.R | 68 rb3-0.0.11/rb3/R/handlers.R | 144 rb3-0.0.11/rb3/R/marketdata.R | 522 rb3-0.0.11/rb3/R/rb3-package.R | 146 rb3-0.0.11/rb3/R/readers.R | 932 rb3-0.0.11/rb3/R/scraper-company.R | 798 rb3-0.0.11/rb3/R/scraper-cotahist.R | 642 rb3-0.0.11/rb3/R/scraper-futures.R | 374 rb3-0.0.11/rb3/R/scraper-indexes.R | 664 rb3-0.0.11/rb3/R/scraper-yc.R | 772 rb3-0.0.11/rb3/R/transmute.R | 496 rb3-0.0.11/rb3/R/util.R | 290 rb3-0.0.11/rb3/R/zzz.R | 248 rb3-0.0.11/rb3/README.md | 820 rb3-0.0.11/rb3/build/vignette.rds |binary rb3-0.0.11/rb3/inst/CITATION | 50 rb3-0.0.11/rb3/inst/doc/B3-Indexes.R | 144 rb3-0.0.11/rb3/inst/doc/B3-Indexes.html | 1080 rb3-0.0.11/rb3/inst/doc/Fetching-historical-future-rates.R | 284 rb3-0.0.11/rb3/inst/doc/Fetching-historical-future-rates.Rmd | 404 rb3-0.0.11/rb3/inst/doc/Fetching-historical-future-rates.html | 1022 rb3-0.0.11/rb3/inst/doc/Fetching-historical-yield-curve.R | 278 rb3-0.0.11/rb3/inst/doc/Fetching-historical-yield-curve.Rmd | 338 rb3-0.0.11/rb3/inst/doc/Fetching-historical-yield-curve.html | 935 rb3-0.0.11/rb3/inst/extdata/CDIIDI.json | 10 rb3-0.0.11/rb3/inst/extdata/GetDetailsCompany.json | 2 rb3-0.0.11/rb3/inst/extdata/GetListedCashDividends.json | 2 rb3-0.0.11/rb3/inst/extdata/GetListedSupplementCompany.json | 2 rb3-0.0.11/rb3/inst/extdata/GetStockIndex.json | 2 rb3-0.0.11/rb3/inst/extdata/GetTheoricalPortfolio.json | 2 rb3-0.0.11/rb3/inst/extdata/templates/AjustesDiarios.yaml | 52 rb3-0.0.11/rb3/inst/extdata/templates/BDIN.yaml | 1906 rb3-0.0.11/rb3/inst/extdata/templates/BD_Arbit.yaml | 1016 rb3-0.0.11/rb3/inst/extdata/templates/CONTRCAD.yaml | 430 rb3-0.0.11/rb3/inst/extdata/templates/COTAHIST_DAILY.yaml | 468 rb3-0.0.11/rb3/inst/extdata/templates/COTAHIST_MONTHLY.yaml | 468 rb3-0.0.11/rb3/inst/extdata/templates/COTAHIST_YEARLY.yaml | 468 rb3-0.0.11/rb3/inst/extdata/templates/CenariosCurva.yaml | 108 rb3-0.0.11/rb3/inst/extdata/templates/CenariosPrecoReferencia.yaml | 104 rb3-0.0.11/rb3/inst/extdata/templates/CenariosSpot.yaml | 96 rb3-0.0.11/rb3/inst/extdata/templates/DeltaOpcoes.yaml | 220 rb3-0.0.11/rb3/inst/extdata/templates/Eletro.yaml | 294 rb3-0.0.11/rb3/inst/extdata/templates/FPR.yaml | 116 rb3-0.0.11/rb3/inst/extdata/templates/GetDetailsCompany.yaml | 129 rb3-0.0.11/rb3/inst/extdata/templates/GetListedCashDividends.yaml | 87 rb3-0.0.11/rb3/inst/extdata/templates/GetListedSupplementCompany.yaml | 263 rb3-0.0.11/rb3/inst/extdata/templates/GetPortfolioDay.yaml | 101 rb3-0.0.11/rb3/inst/extdata/templates/GetPortfolioDay_IndexStatistics.yaml | 201 rb3-0.0.11/rb3/inst/extdata/templates/GetStockIndex.yaml | 77 rb3-0.0.11/rb3/inst/extdata/templates/GetTheoricalPortfolio.yaml | 75 rb3-0.0.11/rb3/inst/extdata/templates/ISIND.yaml | 64 rb3-0.0.11/rb3/inst/extdata/templates/ISINS.yaml | 54 rb3-0.0.11/rb3/inst/extdata/templates/IndexReport.yaml | 100 rb3-0.0.11/rb3/inst/extdata/templates/Indic.yaml | 152 rb3-0.0.11/rb3/inst/extdata/templates/NegociosBTB.yml | 108 rb3-0.0.11/rb3/inst/extdata/templates/NegociosBalcao.yml | 82 rb3-0.0.11/rb3/inst/extdata/templates/NegociosIntraday.yml | 114 rb3-0.0.11/rb3/inst/extdata/templates/OpcoesAcoesEmAberto.yaml | 74 rb3-0.0.11/rb3/inst/extdata/templates/PUWEB.yaml | 120 rb3-0.0.11/rb3/inst/extdata/templates/Premio.yaml | 202 rb3-0.0.11/rb3/inst/extdata/templates/PremioOpcaoAcao.yaml | 98 rb3-0.0.11/rb3/inst/extdata/templates/PriceReport.yaml | 144 rb3-0.0.11/rb3/inst/extdata/templates/SupVol.yaml | 68 rb3-0.0.11/rb3/inst/extdata/templates/TaxaSwap.yaml | 160 rb3-0.0.11/rb3/inst/extdata/templates/TaxasReferenciais.yaml | 46 rb3-0.0.11/rb3/inst/rstudio/addins.dcf | 18 rb3-0.0.11/rb3/man/cachedir.Rd | 46 rb3-0.0.11/rb3/man/clearcache.Rd | 38 rb3-0.0.11/rb3/man/convert_to.Rd | 82 rb3-0.0.11/rb3/man/cotahist-extracts.Rd | 184 rb3-0.0.11/rb3/man/cotahist_get.Rd | 102 rb3-0.0.11/rb3/man/futures_get.Rd | 98 rb3-0.0.11/rb3/man/index_comp_get.Rd | 52 rb3-0.0.11/rb3/man/indexes_get.Rd | 48 rb3-0.0.11/rb3/man/indexes_last_update.Rd | 48 rb3-0.0.11/rb3/man/rb3-package.Rd | 20 rb3-0.0.11/rb3/man/read_marketdata.Rd | 110 rb3-0.0.11/rb3/man/yc_get.Rd | 234 rb3-0.0.11/rb3/tests/fixtures/FPR.yml | 1292 rb3-0.0.11/rb3/tests/fixtures/GetDetailsCompany.yml | 86 rb3-0.0.11/rb3/tests/fixtures/GetListedCashDividends.yml | 102 rb3-0.0.11/rb3/tests/fixtures/GetListedSupplementCompany.yml | 74 rb3-0.0.11/rb3/tests/fixtures/GetListedSupplementCompanyEmpty.yml | 72 rb3-0.0.11/rb3/tests/fixtures/GetPortfolioDay.yml | 264 rb3-0.0.11/rb3/tests/fixtures/GetPortfolioDay_IndexStatistics.yml | 72 rb3-0.0.11/rb3/tests/fixtures/GetStockIndex.yml | 626 rb3-0.0.11/rb3/tests/fixtures/GetTheoricalPortfolio.yml | 156 rb3-0.0.11/rb3/tests/fixtures/NegociosBTB.yml |23046 +++++----- rb3-0.0.11/rb3/tests/fixtures/NegociosBalcao.yml | 70 rb3-0.0.11/rb3/tests/testthat.R | 8 rb3-0.0.11/rb3/tests/testthat/helper-help.R | 24 rb3-0.0.11/rb3/tests/testthat/helper-vcr.R | 10 rb3-0.0.11/rb3/tests/testthat/setup.R | 18 rb3-0.0.11/rb3/tests/testthat/test-PUWEB.R | 16 rb3-0.0.11/rb3/tests/testthat/test-bd_arbit.R | 32 rb3-0.0.11/rb3/tests/testthat/test-bdin.R | 24 rb3-0.0.11/rb3/tests/testthat/test-cache.R | 16 rb3-0.0.11/rb3/tests/testthat/test-company.R | 364 rb3-0.0.11/rb3/tests/testthat/test-contrcad.R | 18 rb3-0.0.11/rb3/tests/testthat/test-convert_to.R | 34 rb3-0.0.11/rb3/tests/testthat/test-cotahist.R | 182 rb3-0.0.11/rb3/tests/testthat/test-downloaders.R | 362 rb3-0.0.11/rb3/tests/testthat/test-fields.R | 72 rb3-0.0.11/rb3/tests/testthat/test-file.R | 62 rb3-0.0.11/rb3/tests/testthat/test-futures.R | 156 rb3-0.0.11/rb3/tests/testthat/test-indexes.R | 140 rb3-0.0.11/rb3/tests/testthat/test-indic.R | 24 rb3-0.0.11/rb3/tests/testthat/test-readers.R | 120 rb3-0.0.11/rb3/tests/testthat/test-transmute.R | 630 rb3-0.0.11/rb3/tests/testthat/test-yc.R | 298 rb3-0.0.11/rb3/vignettes/Fetching-historical-future-rates.Rmd | 404 rb3-0.0.11/rb3/vignettes/Fetching-historical-yield-curve.Rmd | 338 128 files changed, 25937 insertions(+), 25921 deletions(-)
Title: Image Processing for Simulated Cameras
Description: Uses convolution-based techniques to generate simulated camera bokeh, depth of field, and other camera effects, using an image and an optional depth map. Accepts both filename inputs and in-memory array representations of images and matrices. Includes functions to perform 2D convolutions, reorient and resize images/matrices, add image overlays, generate camera vignette effects, and add titles to images.
Author: Tyler Morgan-Wall [aut, cph, cre]
,
Sean Barrett [ctb, cph]
Maintainer: Tyler Morgan-Wall <tylermw@gmail.com>
Diff between rayimage versions 0.10.0 dated 2023-12-09 and 0.11.0 dated 2024-07-13
DESCRIPTION | 11 ++- MD5 | 78 +++++++++++++++------------ NAMESPACE | 5 + R/add_image_overlay.R | 56 +++---------------- R/add_title.R | 45 ++++----------- R/add_vignette.R | 40 +++----------- R/generate_2d_disk.R | 2 R/generate_2d_exponential.R | 2 R/generate_2d_gaussian.R | 2 R/get_file_type.R | 9 ++- R/interpolate_array.R | 25 ++++---- R/plot_image.R | 117 ++++++++++++++++------------------------- R/plot_image_grid.R | 10 +-- R/preview_focus.R | 12 ++-- R/ray_read_image.R |only R/ray_write_image.R |only R/render_bokeh.R | 54 +++++++----------- R/render_bw.R |only R/render_clamp.R |only R/render_convolution.R | 54 +++++++----------- R/render_convolution_fft.R | 59 ++++++++------------ R/render_distance.R | 4 - R/render_reorient.R | 28 +++------ R/render_resized.R | 41 ++++---------- R/run_documentation.R | 11 ++- man/add_image_overlay.Rd | 4 - man/add_title.Rd | 20 +++---- man/add_vignette.Rd | 12 ++-- man/generate_2d_disk.Rd | 2 man/generate_2d_exponential.Rd | 2 man/generate_2d_gaussian.Rd | 2 man/plot_image.Rd | 4 - man/plot_image_grid.Rd | 10 +-- man/ray_read_image.Rd |only man/ray_write_image.Rd |only man/render_bokeh.Rd | 20 +++---- man/render_boolean_distance.Rd | 4 - man/render_bw.Rd |only man/render_clamp.Rd |only man/render_convolution.Rd | 27 +++++---- man/render_convolution_fft.Rd | 33 ++++++----- man/render_reorient.Rd | 8 +- man/render_resized.Rd | 8 +- man/run_documentation.Rd | 9 ++- 44 files changed, 351 insertions(+), 479 deletions(-)
Title: Linguistic Phonetic Fieldwork Tools
Description: There are a lot of different typical tasks that have to be solved during phonetic research and experiments. This includes creating a presentation that will contain all stimuli, renaming and concatenating multiple sound files recorded during a session, automatic annotation in 'Praat' TextGrids (this is one of the sound annotation standards provided by 'Praat' software, see Boersma & Weenink 2020 <https://www.fon.hum.uva.nl/praat/>), creating an html table with annotations and spectrograms, and converting multiple formats ('Praat' TextGrid, 'ELAN', 'EXMARaLDA', 'Audacity', subtitles '.srt', and 'FLEx' flextext). All of these tasks can be solved by a mixture of different tools (any programming language has programs for automatic renaming, and Praat contains scripts for concatenating and renaming files, etc.). 'phonfieldwork' provides a functionality that will make it easier to solve those tasks independently of any additional tools. You can also compare the functionality with ot [...truncated...]
Author: George Moroz [aut, cre] ,
Jonathan Keane [rev] ,
Niko Partanen [rev] ,
Valeria Buntiakova [ctb]
Maintainer: George Moroz <agricolamz@gmail.com>
Diff between phonfieldwork versions 0.0.14 dated 2024-05-10 and 0.0.15 dated 2024-07-13
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 5 +++++ R/df_to_tier.R | 12 ++++++++++++ build/vignette.rds |binary inst/doc/ethical_research_with_phonfieldwork.html | 4 ++-- 6 files changed, 27 insertions(+), 10 deletions(-)
Title: Alternating Optimization
Description: Alternating optimization is an iterative procedure that optimizes
a function by alternately performing restricted optimization over individual
parameter subsets. Instead of tackling joint optimization directly, it
breaks the problem down into simpler sub-problems. This approach can make
optimization feasible when joint optimization is too difficult.
Author: Lennart Oelschlaeger [aut, cre]
,
Siddhartha Chib [ctb]
Maintainer: Lennart Oelschlaeger <oelschlaeger.lennart@gmail.com>
Diff between ao versions 1.0.0 dated 2024-06-20 and 1.1.0 dated 2024-07-13
ao-1.0.0/ao/vignettes/README-rosenbrock_ao_path-1.png |only ao-1.1.0/ao/DESCRIPTION | 9 ao-1.1.0/ao/MD5 | 42 ao-1.1.0/ao/NAMESPACE | 42 ao-1.1.0/ao/NEWS.md | 254 +- ao-1.1.0/ao/R/ao-package.R | 82 ao-1.1.0/ao/R/ao.R | 862 ++++--- ao-1.1.0/ao/R/procedure.R | 1909 ++++++++-------- ao-1.1.0/ao/README.md | 270 +- ao-1.1.0/ao/build/vignette.rds |binary ao-1.1.0/ao/inst/doc/ao.R | 304 +- ao-1.1.0/ao/inst/doc/ao.Rmd | 731 +++--- ao-1.1.0/ao/inst/doc/ao.html | 1832 +++++++-------- ao-1.1.0/ao/man/Procedure.Rd | 1143 +++++---- ao-1.1.0/ao/man/ao-package.Rd | 60 ao-1.1.0/ao/man/ao.Rd | 487 ++-- ao-1.1.0/ao/man/ao_input_check.Rd | 64 ao-1.1.0/ao/man/figures/README-rosenbrock_ao_path-1.png |only ao-1.1.0/ao/tests/testthat.R | 8 ao-1.1.0/ao/tests/testthat/test-ao.R | 154 - ao-1.1.0/ao/tests/testthat/test-procedure.R | 22 ao-1.1.0/ao/vignettes/ao.Rmd | 731 +++--- ao-1.1.0/ao/vignettes/ref.bib | 97 23 files changed, 4841 insertions(+), 4262 deletions(-)
Title: Easy Access to Model Information for Various Model Objects
Description: A tool to provide an easy, intuitive and consistent
access to information contained in various R models, like model
formulas, model terms, information about random effects, data that was
used to fit the model or data from response variables. 'insight'
mainly revolves around two types of functions: Functions that find
(the names of) information, starting with 'find_', and functions that
get the underlying data, starting with 'get_'. The package has a
consistent syntax and works with many different model objects, where
otherwise functions to access these information are missing.
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut, ctb] ,
Indrajeet Patil [aut, ctb] ,
Philip Waggoner [aut, ctb] ,
Mattan S. Ben-Shachar [aut, ctb]
,
Brenton M. Wiernik [aut, ctb] ,
Vincent Arel-Bundock [aut, ctb]
,
Etienne Bacher [aut, ctb] ,
Ale [...truncated...]
Maintainer: Daniel Luedecke <d.luedecke@uke.de>
Diff between insight versions 0.20.1 dated 2024-06-11 and 0.20.2 dated 2024-07-13
DESCRIPTION | 45 MD5 | 159 +-- NAMESPACE | 21 NEWS.md | 121 +- R/colour_tools.R | 3 R/compute_variances.R | 1017 ++++++++++++-------- R/find_formula.R | 12 R/find_interactions.R | 8 R/find_offset.R | 26 R/find_parameters.R | 6 R/find_parameters_bayesian.R | 40 R/find_parameters_emmeans.R | 8 R/find_parameters_mixed.R | 24 R/find_parameters_other.R | 28 R/find_random.R | 4 R/find_statistic.R | 5 R/find_terms.R | 22 R/find_transformation.R | 116 +- R/format_message.R | 21 R/format_rope.R | 6 R/format_value.R | 62 - R/get_data.R | 3 R/get_df.R | 15 R/get_nested_lme_varcorr.R | 7 R/get_parameters_gam.R | 18 R/get_parameters_mixed.R | 13 R/get_parameters_others.R | 49 R/get_sigma.R | 88 + R/get_statistic.R | 33 R/get_transformation.R | 31 R/get_varcov.R | 12 R/get_varcov_sandwich.R | 6 R/get_variances.R | 161 ++- R/helper_functions.R | 79 - R/is_model.R | 6 R/is_model_supported.R | 7 R/is_nested_models.R | 10 R/link_function.R | 25 R/link_inverse.R | 25 R/model_info.R | 20 R/n_obs.R | 6 R/n_parameters.R | 2 R/null_model.R | 75 - R/print.easystats_check.R | 16 R/utilities.R | 2 R/utils_model_info.R | 4 README.md | 173 +-- build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 3 inst/doc/display.html | 274 ++--- inst/doc/export.html | 660 ++++++------ inst/doc/insight.html | 246 ++-- man/find_parameters.averaging.Rd | 8 man/find_transformation.Rd | 12 man/format_message.Rd | 11 man/get_parameters.betareg.Rd | 3 man/get_transformation.Rd | 5 man/get_varcov.Rd | 8 man/get_variance.Rd | 147 ++ tests/testthat/_snaps/export_table.md | 44 tests/testthat/_snaps/format_table_ci.md | 22 tests/testthat/_snaps/mipo.md | 52 - tests/testthat/test-GLMMadaptive.R | 110 ++ tests/testthat/test-brms_gr_random_effects.R | 2 tests/testthat/test-clmm.R | 13 tests/testthat/test-find_terms.R | 6 tests/testthat/test-find_transformation.R | 18 tests/testthat/test-gamlss.R | 7 tests/testthat/test-get_transformation.R |only tests/testthat/test-glmgee.R |only tests/testthat/test-lme.R | 4 tests/testthat/test-null_model.R | 44 tests/testthat/test-r2_nakagawa_bernoulli.R |only tests/testthat/test-r2_nakagawa_beta.R |only tests/testthat/test-r2_nakagawa_binomial.R |only tests/testthat/test-r2_nakagawa_gamma.R |only tests/testthat/test-r2_nakagawa_linear.R |only tests/testthat/test-r2_nakagawa_negbin.R |only tests/testthat/test-r2_nakagawa_negbin_zi.R |only tests/testthat/test-r2_nakagawa_ordered_beta.R |only tests/testthat/test-r2_nakagawa_poisson.R |only tests/testthat/test-r2_nakagawa_poisson_zi.R |only tests/testthat/test-r2_nakagawa_truncated_poisson.R |only tests/testthat/test-r2_nakagawa_tweedie.R |only tests/testthat/test-rlmer.R | 58 - tests/testthat/test-rstanarm.R | 9 tests/testthat/test-svylme.R |only 88 files changed, 2709 insertions(+), 1697 deletions(-)
Title: Diagnostic Analysis Using Forward Search Procedure for Various
Models
Description: Identifies potential data outliers and their impact on estimates and
analyses. Uses the forward search approach of Atkinson and Riani, "Robust
Diagnostic Regression Analysis", 2000,<ISBN: o-387-95017-6> to prepare
descriptive statistics of a dataset that is to be analyzed by stats::lm(),
stats::glm(), stats::nls(), nlme::lme() or survival::coxph(). Includes
graphics functions to display the descriptive statistics.
Author: William Fairweather [aut, cre]
Maintainer: William Fairweather <wrf343@flowervalleyconsulting.com>
Diff between forsearch versions 6.1.0 dated 2024-06-22 and 6.2.0 dated 2024-07-13
forsearch-6.1.0/forsearch/R/Alfalfa.O.A.R |only forsearch-6.1.0/forsearch/R/Alfalfa.O.forlme2.R |only forsearch-6.1.0/forsearch/R/Machines.O.forlme.R |only forsearch-6.1.0/forsearch/R/Machines.O.forlme2.R |only forsearch-6.1.0/forsearch/R/my.transfer.R |only forsearch-6.1.0/forsearch/R/train.for3.R |only forsearch-6.2.0/forsearch/DESCRIPTION | 6 forsearch-6.2.0/forsearch/MD5 | 66 +-- forsearch-6.2.0/forsearch/NEWS.md | 16 forsearch-6.2.0/forsearch/R/aStep1.R | 197 ++++------ forsearch-6.2.0/forsearch/R/aStep2.R | 36 + forsearch-6.2.0/forsearch/R/bStep1.R |only forsearch-6.2.0/forsearch/R/bStep2.R | 98 ++-- forsearch-6.2.0/forsearch/R/cStep1.R |only forsearch-6.2.0/forsearch/R/cStep2.R | 35 + forsearch-6.2.0/forsearch/R/dStep1.R | 7 forsearch-6.2.0/forsearch/R/eStep1.R | 14 forsearch-6.2.0/forsearch/R/eStep2.R | 13 forsearch-6.2.0/forsearch/R/forsearch_cph.R | 123 +++--- forsearch-6.2.0/forsearch/R/forsearch_lm.R | 14 forsearch-6.2.0/forsearch/R/forsearch_lme.R | 22 - forsearch-6.2.0/forsearch/R/forsearch_nls.R | 17 forsearch-6.2.0/forsearch/R/plotdiag.ANOX2.R | 3 forsearch-6.2.0/forsearch/README.md | 7 forsearch-6.2.0/forsearch/build/partial.rdb |binary forsearch-6.2.0/forsearch/inst/doc/Exploring-the-Search-History.html | 6 forsearch-6.2.0/forsearch/inst/doc/Exploring-the-Search-History.rmd | 5 forsearch-6.2.0/forsearch/inst/doc/How-many-observations-are-needed-and-where-do-we-get-them.Rmd | 8 forsearch-6.2.0/forsearch/inst/doc/How-many-observations-are-needed-and-where-do-we-get-them.html | 8 forsearch-6.2.0/forsearch/man/aStep1.rd | 4 forsearch-6.2.0/forsearch/man/bStep1.rd |only forsearch-6.2.0/forsearch/man/bStep2.rd | 3 forsearch-6.2.0/forsearch/man/cStep1.Rd |only forsearch-6.2.0/forsearch/man/forsearch_cph.Rd | 8 forsearch-6.2.0/forsearch/man/forsearch_glm.Rd | 5 forsearch-6.2.0/forsearch/man/forsearch_lm.Rd | 3 forsearch-6.2.0/forsearch/man/forsearch_nls.rd | 23 - forsearch-6.2.0/forsearch/vignettes/Exploring-the-Search-History.rmd | 5 forsearch-6.2.0/forsearch/vignettes/How-many-observations-are-needed-and-where-do-we-get-them.Rmd | 8 39 files changed, 393 insertions(+), 367 deletions(-)
Title: An Implementation of Sensitivity Analysis in Bayesian Networks
Description: An implementation of sensitivity and robustness methods in Bayesian networks in R. It includes methods to perform parameter variations via a variety of co-variation schemes, to compute sensitivity functions and to quantify the dissimilarity of two Bayesian networks via distances and divergences. It further includes diagnostic methods to assess the goodness of fit of a Bayesian networks to data, including global, node and parent-child monitors. Reference: M. Leonelli, R. Ramanathan, R.L. Wilkerson (2022) <doi:10.1016/j.knosys.2023.110882>.
Author: Manuele Leonelli [aut, cre],
Ramsiya Ramanathan [aut],
Rachel Wilkerson [aut]
Maintainer: Manuele Leonelli <manuele.leonelli@ie.edu>
Diff between bnmonitor versions 0.1.4 dated 2023-06-02 and 0.2.0 dated 2024-07-13
DESCRIPTION | 14 MD5 | 174 ++-- NAMESPACE | 242 +++--- R/CD_distance.R | 494 ++++++------- R/Jeffreys.R | 454 ++++++------ R/KL.R | 1034 ++++++++++++++-------------- R/KL_bounds.R | 150 ++-- R/amalgamation.R |only R/asymeasure.R |only R/aux_diameter.R |only R/aux_gbn.R | 80 +- R/aux_global.R | 46 - R/aux_node.R | 30 R/bn2.R | 168 ++-- R/bnmonitor.R | 170 ++-- R/cachexia.R | 69 - R/chds.R | 70 - R/covariation.R | 374 +++++----- R/covariation_matrix.R | 314 ++++---- R/diabetes.R | 50 - R/diameter.R |only R/dwi.R |only R/edgestrength.R |only R/ewi.R |only R/final_node_monitor.R | 114 +-- R/fire_alarm.R | 42 - R/fquery.R | 76 +- R/frobenius.R | 470 ++++++------ R/global_monitor.R | 82 +- R/influential_obs.R | 76 +- R/mathmarks.R | 40 - R/model_pres_cov.R | 140 +-- R/mutualinfo.R |only R/node_monitor.R | 90 +- R/parent_child_monitor.R | 202 ++--- R/plot.R | 541 ++++++++------ R/print.R | 272 ++++--- R/psd_check.R | 188 ++--- R/sensitivity.R | 549 +++++++------- R/sensquery.R | 260 +++---- R/seq_node_monitor.R | 214 ++--- R/standard.R | 148 ++-- R/synthetic_bn.R | 36 R/synthetic_cbn.R | 42 - R/travel.R | 40 - README.md | 178 ++-- inst |only man/CD.Rd | 114 +-- man/Fro.CI.Rd | 86 +- man/Fro.GBN.Rd | 70 - man/Fro.Rd | 50 - man/Jeffreys.CI.Rd | 84 +- man/Jeffreys.GBN.Rd | 78 +- man/Jeffreys.Rd | 50 - man/KL.CI.Rd | 84 +- man/KL.GBN.Rd | 82 +- man/KL.Rd | 50 - man/KL.bn.fit.Rd | 114 +-- man/KL_bounds.Rd | 78 +- man/amalgamation.Rd |only man/asy_measure.Rd |only man/bn2.Rd | 56 - man/bnmonitor.Rd | 210 +++-- man/cachexia.Rd | 89 +- man/chds.Rd | 82 +- man/covariance_var.Rd | 90 +- man/covariation.Rd | 109 +- man/covariation_matrix.Rd | 96 +- man/diabetes.Rd | 54 - man/diameter.Rd |only man/dwi.Rd |only man/edge_strength.Rd |only man/ewi.Rd |only man/final_node_monitor.Rd | 86 +- man/fire_alarm.Rd | 54 - man/global_monitor.Rd | 66 - man/influential_obs.Rd | 68 - man/mathmarks.Rd | 52 - man/mean_var.Rd | 72 - man/model_pres_cov.Rd | 98 +- man/mutual_info.Rd |only man/node_monitor.Rd | 78 +- man/plot.Rd | 119 +-- man/print.Rd | 106 +- man/psd_check.Rd | 110 +- man/sensitivity.Rd | 136 +-- man/sensquery.Rd | 106 +- man/seq_node_monitor.Rd | 102 +- man/seq_pa_ch_monitor.Rd | 98 +- man/synthetic_bn.Rd | 48 - man/synthetic_cbn.Rd | 56 - man/travel.Rd | 54 - tests/testthat.R | 8 tests/testthat/test-CovariationSchemes.R | 80 +- tests/testthat/test-DissimilarityMeasures.R | 106 +- tests/testthat/test-Sensitivity.R | 64 - 96 files changed, 5762 insertions(+), 5464 deletions(-)
Title: Convert European Regional Data
Description: Motivated by changing administrative boundaries over time,
the 'nuts' package can convert European regional data with NUTS codes
between versions (2006, 2010, 2013, 2016 and 2021) and levels (NUTS 1,
NUTS 2 and NUTS 3). The package uses spatial interpolation as in Lam
(1983) <doi:10.1559/152304083783914958> based on granular (100m x
100m) area, population and land use data provided by the European
Commission's Joint Research Center.
Author: Moritz Hennicke [aut, cre, cph]
,
Werner Krause [aut, cph] ,
Pueyo-Ros Josep [rev] ,
Le Meur Nolwenn [rev]
Maintainer: Moritz Hennicke <AAoritz@posteo.de>
Diff between nuts versions 1.0.0 dated 2024-03-22 and 1.1.0 dated 2024-07-13
DESCRIPTION | 6 ++--- MD5 | 28 +++++++++++------------ NEWS.md | 5 ++++ R/all_nuts_codes.R | 2 - R/cross_walks.R | 2 - R/nuts_aggregate.R | 10 +++++--- README.md | 7 ++++- inst/CITATION | 3 +- inst/doc/nuts.R | 2 - inst/doc/nuts.Rmd | 36 +++++++++++------------------- inst/doc/nuts.html | 33 +++++++++++++--------------- man/all_nuts_codes.Rd | 2 - man/cross_walks.Rd | 2 - tests/testthat/test-nuts_aggregate.R | 41 ++++++++++++++++++++++++++++++++++- vignettes/nuts.Rmd | 36 +++++++++++------------------- 15 files changed, 125 insertions(+), 90 deletions(-)
Title: Computes Statistics from Discrimination Experimental Data
Description: In discrimination experiments candidates are sent on the same test (e.g. job, house rental) and one examines whether they receive the same outcome. The number of non negative answers are first examined in details looking for outcome differences. Then various answering rates and their exacts confidence intervals are computed. Last, exact and asymptotic discrimination tests are performed. Graphical methods are also available.
Author: Emmanuel Duguet [aut, cre] ,
David Gray [ctb] ,
Loic du Parquet [dtc],
Yannick L'Horty [ctb] ,
Remi Le Gall [dtc] ,
Noam Leandri [dtc],
Pascale Petit [ctb] ,
Florent Sari [ctb]
Maintainer: Emmanuel Duguet <emmanuel.duguet@u-pec.fr>
Diff between callback versions 0.1.0 dated 2024-05-07 and 0.1.1 dated 2024-07-13
callback-0.1.0/callback/R/callback_methods.R |only callback-0.1.0/callback/R/data_sets.R |only callback-0.1.0/callback/R/stat_comp.R |only callback-0.1.0/callback/R/stat_count.R |only callback-0.1.0/callback/R/stat_prop.R |only callback-0.1.0/callback/data/media1.RData |only callback-0.1.0/callback/man/media1.Rd |only callback-0.1.0/callback/man/print.stat_comp.Rd |only callback-0.1.0/callback/man/stat_comp.Rd |only callback-0.1.0/callback/man/stat_prop.Rd |only callback-0.1.1/callback/DESCRIPTION | 68 +- callback-0.1.1/callback/MD5 | 83 ++- callback-0.1.1/callback/NAMESPACE | 46 + callback-0.1.1/callback/R/callback.R | 265 ++++++----- callback-0.1.1/callback/R/callback_data.R |only callback-0.1.1/callback/R/callback_graph.R |only callback-0.1.1/callback/R/callback_misc.R |only callback-0.1.1/callback/R/callback_print.R |only callback-0.1.1/callback/R/callback_stat.R |only callback-0.1.1/callback/data/address1.RData |only callback-0.1.1/callback/data/gender2.RData |only callback-0.1.1/callback/data/gender3.RData |only callback-0.1.1/callback/data/gender4.RData |only callback-0.1.1/callback/data/labour1.RData |binary callback-0.1.1/callback/data/labour2.RData |binary callback-0.1.1/callback/inst/doc/getting-started.R | 29 + callback-0.1.1/callback/inst/doc/getting-started.Rmd | 74 ++- callback-0.1.1/callback/inst/doc/getting-started.html | 432 +++++++++--------- callback-0.1.1/callback/man/address1.Rd |only callback-0.1.1/callback/man/callback.Rd | 61 +- callback-0.1.1/callback/man/g_difp.Rd |only callback-0.1.1/callback/man/g_ecs.Rd |only callback-0.1.1/callback/man/g_prop.Rd |only callback-0.1.1/callback/man/g_tcs.Rd |only callback-0.1.1/callback/man/gender1.Rd | 54 +- callback-0.1.1/callback/man/gender2.Rd |only callback-0.1.1/callback/man/gender3.Rd |only callback-0.1.1/callback/man/gender4.Rd |only callback-0.1.1/callback/man/graph.Rd |only callback-0.1.1/callback/man/graph.stat_ecs.Rd |only callback-0.1.1/callback/man/graph.stat_glob.Rd |only callback-0.1.1/callback/man/graph.stat_mcr.Rd |only callback-0.1.1/callback/man/graph.stat_tcs.Rd |only callback-0.1.1/callback/man/inter1.Rd | 46 - callback-0.1.1/callback/man/is.calc.Rd |only callback-0.1.1/callback/man/labour1.Rd | 30 - callback-0.1.1/callback/man/labour2.Rd | 30 - callback-0.1.1/callback/man/mobility1.Rd | 42 - callback-0.1.1/callback/man/origin1.Rd | 66 +- callback-0.1.1/callback/man/origin2.Rd | 70 +- callback-0.1.1/callback/man/print.callback.Rd | 4 callback-0.1.1/callback/man/print.stat_count.Rd | 4 callback-0.1.1/callback/man/print.stat_ecs.Rd |only callback-0.1.1/callback/man/print.stat_glob.Rd |only callback-0.1.1/callback/man/print.stat_prop.Rd | 16 callback-0.1.1/callback/man/stat_colsums.Rd |only callback-0.1.1/callback/man/stat_count.Rd | 42 + callback-0.1.1/callback/man/stat_ecs.Rd |only callback-0.1.1/callback/man/stat_glob.Rd |only callback-0.1.1/callback/man/stat_mcr.Rd |only callback-0.1.1/callback/man/stat_signif.Rd |only callback-0.1.1/callback/man/stat_tcs.Rd |only callback-0.1.1/callback/vignettes/getting-started.Rmd | 74 ++- 63 files changed, 932 insertions(+), 604 deletions(-)
Title: Interface to the 'PubChem' Database for Chemical Data Retrieval
Description: Provides an interface to the 'PubChem' database via the PUG REST <https://pubchem.ncbi.nlm.nih.gov/docs/pug-rest> and
PUG View <https://pubchem.ncbi.nlm.nih.gov/docs/pug-view> services. This package allows users to automatically
access chemical and biological data from 'PubChem', including compounds, substances, assays, and various other data types.
Functions are available to retrieve data in different formats, perform searches, and access detailed annotations.
Author: Selcuk Korkmaz [aut, cre] ,
Bilge Eren Yamasan [aut] ,
Dincer Goksuluk [aut]
Maintainer: Selcuk Korkmaz <selcukorkmaz@gmail.com>
Diff between PubChemR versions 1.2 dated 2024-01-16 and 2.0 dated 2024-07-13
PubChemR-1.2/PubChemR/R/pubchem_summary.R |only PubChemR-1.2/PubChemR/README.md |only PubChemR-1.2/PubChemR/man/BondType.Rd |only PubChemR-1.2/PubChemR/man/CompoundIdType.Rd |only PubChemR-1.2/PubChemR/man/CoordinateType.Rd |only PubChemR-1.2/PubChemR/man/ELEMENTS.Rd |only PubChemR-1.2/PubChemR/man/ProjectCategory.Rd |only PubChemR-1.2/PubChemR/man/api_base.Rd |only PubChemR-1.2/PubChemR/man/get_json.Rd |only PubChemR-1.2/PubChemR/man/get_pubchem.Rd |only PubChemR-1.2/PubChemR/man/property_map.Rd |only PubChemR-1.2/PubChemR/man/pubchem_summary.Rd |only PubChemR-1.2/PubChemR/man/request.Rd |only PubChemR-2.0/PubChemR/DESCRIPTION | 21 + PubChemR-2.0/PubChemR/MD5 | 114 +++++--- PubChemR-2.0/PubChemR/NAMESPACE | 71 ++++- PubChemR-2.0/PubChemR/R/00_globals.R | 336 ++++++++++++++++++++------ PubChemR-2.0/PubChemR/R/01_all_classes.R |only PubChemR-2.0/PubChemR/R/download.R | 5 PubChemR-2.0/PubChemR/R/get_aids.R | 155 +++-------- PubChemR-2.0/PubChemR/R/get_assays.R | 79 +++--- PubChemR-2.0/PubChemR/R/get_cids.R | 97 ++----- PubChemR-2.0/PubChemR/R/get_compounds.R | 84 +++--- PubChemR-2.0/PubChemR/R/get_json.R | 75 +++-- PubChemR-2.0/PubChemR/R/get_properties.R | 157 +++++++----- PubChemR-2.0/PubChemR/R/get_pubchem.R | 14 - PubChemR-2.0/PubChemR/R/get_pug_rest.R | 330 ++++++++++++++----------- PubChemR-2.0/PubChemR/R/get_pug_view.R | 141 +++++----- PubChemR-2.0/PubChemR/R/get_sdf.R | 26 +- PubChemR-2.0/PubChemR/R/get_sids.R | 124 ++------- PubChemR-2.0/PubChemR/R/get_substances.R | 69 ++--- PubChemR-2.0/PubChemR/R/get_synonyms.R | 53 ++-- PubChemR-2.0/PubChemR/R/getter_functions.R |only PubChemR-2.0/PubChemR/R/printMethods.R |only PubChemR-2.0/PubChemR/R/request.R | 12 PubChemR-2.0/PubChemR/build |only PubChemR-2.0/PubChemR/inst |only PubChemR-2.0/PubChemR/man/AIDs-SIDs-CIDs.Rd |only PubChemR-2.0/PubChemR/man/PubChemR-classes.Rd |only PubChemR-2.0/PubChemR/man/PugView-classes.Rd |only PubChemR-2.0/PubChemR/man/download.Rd | 2 PubChemR-2.0/PubChemR/man/get_aids.Rd | 34 +- PubChemR-2.0/PubChemR/man/get_assays.Rd | 32 +- PubChemR-2.0/PubChemR/man/get_cids.Rd | 26 +- PubChemR-2.0/PubChemR/man/get_compounds.Rd | 30 +- PubChemR-2.0/PubChemR/man/get_properties.Rd | 106 +++++++- PubChemR-2.0/PubChemR/man/get_pug_rest.Rd | 26 +- PubChemR-2.0/PubChemR/man/get_pug_view.Rd | 4 PubChemR-2.0/PubChemR/man/get_sdf.Rd | 9 PubChemR-2.0/PubChemR/man/get_sids.Rd | 14 - PubChemR-2.0/PubChemR/man/get_substances.Rd | 19 + PubChemR-2.0/PubChemR/man/get_synonyms.Rd | 10 PubChemR-2.0/PubChemR/man/instance.Rd |only PubChemR-2.0/PubChemR/man/pubChemData.Rd |only PubChemR-2.0/PubChemR/man/request_args.Rd |only PubChemR-2.0/PubChemR/man/retrieve.Rd |only PubChemR-2.0/PubChemR/man/section.Rd |only PubChemR-2.0/PubChemR/man/sectionList.Rd |only PubChemR-2.0/PubChemR/man/synonyms.Rd |only PubChemR-2.0/PubChemR/tests |only PubChemR-2.0/PubChemR/vignettes |only 61 files changed, 1341 insertions(+), 934 deletions(-)
Title: Create Pivot Table Easily
Description: Pivot easily by specifying rows, columns, values and split.
Author: Toshikazu Matsumura [aut, cre]
Maintainer: Toshikazu Matsumura <matutosi@gmail.com>
Diff between pivotea versions 1.0.1 dated 2023-07-15 and 1.0.2 dated 2024-07-13
pivotea-1.0.1/pivotea/R/utils-pipe.R |only pivotea-1.0.1/pivotea/man/pipe.Rd |only pivotea-1.0.2/pivotea/DESCRIPTION | 14 pivotea-1.0.2/pivotea/MD5 | 45 pivotea-1.0.2/pivotea/NAMESPACE | 2 pivotea-1.0.2/pivotea/NEWS.md | 9 pivotea-1.0.2/pivotea/R/data.R | 2 pivotea-1.0.2/pivotea/R/pivot.R | 85 - pivotea-1.0.2/pivotea/R/utils.R | 16 pivotea-1.0.2/pivotea/README.md | 274 +--- pivotea-1.0.2/pivotea/build/vignette.rds |binary pivotea-1.0.2/pivotea/data/hogwarts.rda |binary pivotea-1.0.2/pivotea/inst/WORDLIST | 1 pivotea-1.0.2/pivotea/inst/doc/pivotea.R | 18 pivotea-1.0.2/pivotea/inst/doc/pivotea.Rmd | 16 pivotea-1.0.2/pivotea/inst/doc/pivotea.html | 1149 ++++++++---------- pivotea-1.0.2/pivotea/man/extract_col.Rd | 28 pivotea-1.0.2/pivotea/man/hogwarts.Rd | 2 pivotea-1.0.2/pivotea/man/na2empty.Rd | 28 pivotea-1.0.2/pivotea/man/omit_na_cols.Rd | 28 pivotea-1.0.2/pivotea/man/omit_na_rows.Rd | 28 pivotea-1.0.2/pivotea/man/pivot.Rd | 32 pivotea-1.0.2/pivotea/man/validate_col.Rd | 28 pivotea-1.0.2/pivotea/vignettes/file260835345145.html |only pivotea-1.0.2/pivotea/vignettes/pivotea.Rmd | 16 25 files changed, 850 insertions(+), 971 deletions(-)
Title: Group Elastic Net Regularized GLMs and GAMs
Description: Efficient algorithms for fitting generalized linear and additive models with group elastic net penalties as described in Helwig (2024) <doi:10.1080/10618600.2024.2362232>. Implements group LASSO, group MCP, and group SCAD with an optional group ridge penalty. Computes the regularization path for linear regression (gaussian), logistic regression (binomial), multinomial logistic regression (multinomial), log-linear count regression (poisson and negative.binomial), and log-linear continuous regression (gamma and inverse gaussian). Supports default and formula methods for model specification, k-fold cross-validation for tuning the regularization parameters, and nonparametric regression via tensor product reproducing kernel (smoothing spline) basis function expansion.
Author: Nathaniel E. Helwig [aut, cre]
Maintainer: Nathaniel E. Helwig <helwig@umn.edu>
Diff between grpnet versions 0.4 dated 2024-06-05 and 0.5 dated 2024-07-13
ChangeLog | 35 ++ DESCRIPTION | 8 MD5 | 48 +-- NAMESPACE | 5 R/R_grpnet_binomial.R |only R/R_grpnet_gamma.R |only R/R_grpnet_gaussian.R |only R/R_grpnet_invgaus.R |only R/R_grpnet_maxeigval.R |only R/R_grpnet_multinom.R |only R/R_grpnet_negbin.R |only R/R_grpnet_penalty.R |only R/R_grpnet_poisson.R |only R/cv.grpnet.default.R | 43 +- R/family.grpnet.R |only R/grpnet.default.R | 724 ++++++++++++++++++++++++++++------------------- R/grpnet.formula.R | 6 build/partial.rdb |binary man/cv.grpnet.Rd | 43 +- man/family.grpnet.Rd |only man/grpnet.Rd | 40 +- man/internals-grpnet.Rd |only man/predict.cv.grpnet.Rd | 145 ++++----- man/predict.grpnet.Rd | 78 ++--- src/grpnet_binomial.f90 | 2 src/grpnet_gamma.f90 | 4 src/grpnet_gaussian.f90 | 49 +-- src/grpnet_invgaus.f90 | 13 src/grpnet_multinom.f90 | 10 src/grpnet_negbin.f90 | 16 - src/grpnet_poisson.f90 | 17 - 31 files changed, 728 insertions(+), 558 deletions(-)