Title: Easy Data Wrangling and Statistical Transformations
Description: A lightweight package to assist in key steps involved in any data
analysis workflow: (1) wrangling the raw data to get it in the needed form,
(2) applying preprocessing steps and statistical transformations, and
(3) compute statistical summaries of data properties and distributions.
It is also the data wrangling backend for packages in 'easystats' ecosystem.
References: Patil et al. (2022) <doi:10.21105/joss.04684>.
Author: Indrajeet Patil [aut] ,
Etienne Bacher [aut, cre] ,
Dominique Makowski [aut] ,
Daniel Luedecke [aut] ,
Mattan S. Ben-Shachar [aut] ,
Brenton M. Wiernik [aut] ,
Remi Theriault [ctb] ,
Thomas J. Faulkenberry [rev],
Robert Garrett [rev]
Maintainer: Etienne Bacher <etienne.bacher@protonmail.com>
Diff between datawizard versions 0.12.1 dated 2024-07-15 and 0.12.2 dated 2024-07-20
datawizard-0.12.1/datawizard/tests/testthat/test.sav |only datawizard-0.12.2/datawizard/DESCRIPTION | 12 datawizard-0.12.2/datawizard/MD5 | 23 datawizard-0.12.2/datawizard/NEWS.md | 1601 +++++----- datawizard-0.12.2/datawizard/inst/doc/selection_syntax.R | 22 datawizard-0.12.2/datawizard/inst/doc/selection_syntax.Rmd | 41 datawizard-0.12.2/datawizard/inst/doc/selection_syntax.html | 25 datawizard-0.12.2/datawizard/inst/doc/tidyverse_translation.R | 14 datawizard-0.12.2/datawizard/inst/doc/tidyverse_translation.Rmd | 25 datawizard-0.12.2/datawizard/inst/doc/tidyverse_translation.html | 10 datawizard-0.12.2/datawizard/man/coef_var.Rd | 4 datawizard-0.12.2/datawizard/vignettes/selection_syntax.Rmd | 41 datawizard-0.12.2/datawizard/vignettes/tidyverse_translation.Rmd | 25 13 files changed, 912 insertions(+), 931 deletions(-)
Title: Performance Measures for 'mlr3'
Description: Implements multiple performance measures for supervised
learning. Includes over 40 measures for regression and
classification. Additionally, meta information about the performance
measures can be queried, e.g. what the best and worst possible
performances scores are.
Author: Michel Lang [aut] ,
Martin Binder [ctb],
Marc Becker [cre, aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3measures versions 0.5.0 dated 2022-08-05 and 0.6.0 dated 2024-07-20
mlr3measures-0.5.0/mlr3measures/R/binary_mcc.R |only mlr3measures-0.6.0/mlr3measures/DESCRIPTION | 51 +++--- mlr3measures-0.6.0/mlr3measures/MD5 | 82 +++++----- mlr3measures-0.6.0/mlr3measures/NAMESPACE | 3 mlr3measures-0.6.0/mlr3measures/NEWS.md | 11 - mlr3measures-0.6.0/mlr3measures/R/bibentries.R | 10 + mlr3measures-0.6.0/mlr3measures/R/binary_gmean.R |only mlr3measures-0.6.0/mlr3measures/R/binary_gpr.R |only mlr3measures-0.6.0/mlr3measures/R/classif_acc.R | 2 mlr3measures-0.6.0/mlr3measures/R/classif_mcc.R |only mlr3measures-0.6.0/mlr3measures/R/classif_zero_one.R | 10 + mlr3measures-0.6.0/mlr3measures/R/measures.R | 12 + mlr3measures-0.6.0/mlr3measures/R/regr_rmse.R | 2 mlr3measures-0.6.0/mlr3measures/README.md | 2 mlr3measures-0.6.0/mlr3measures/build/partial.rdb |binary mlr3measures-0.6.0/mlr3measures/man/acc.Rd | 1 mlr3measures-0.6.0/mlr3measures/man/auc.Rd | 13 - mlr3measures-0.6.0/mlr3measures/man/bacc.Rd | 1 mlr3measures-0.6.0/mlr3measures/man/bbrier.Rd | 13 - mlr3measures-0.6.0/mlr3measures/man/ce.Rd | 1 mlr3measures-0.6.0/mlr3measures/man/dor.Rd | 13 - mlr3measures-0.6.0/mlr3measures/man/fbeta.Rd | 13 - mlr3measures-0.6.0/mlr3measures/man/fdr.Rd | 13 - mlr3measures-0.6.0/mlr3measures/man/fn.Rd | 11 - mlr3measures-0.6.0/mlr3measures/man/fnr.Rd | 11 - mlr3measures-0.6.0/mlr3measures/man/fomr.Rd | 13 - mlr3measures-0.6.0/mlr3measures/man/fp.Rd | 11 - mlr3measures-0.6.0/mlr3measures/man/fpr.Rd | 11 - mlr3measures-0.6.0/mlr3measures/man/gmean.Rd |only mlr3measures-0.6.0/mlr3measures/man/gpr.Rd |only mlr3measures-0.6.0/mlr3measures/man/logloss.Rd | 1 mlr3measures-0.6.0/mlr3measures/man/mauc_aunu.Rd | 1 mlr3measures-0.6.0/mlr3measures/man/mbrier.Rd | 1 mlr3measures-0.6.0/mlr3measures/man/mcc.Rd | 75 +++++---- mlr3measures-0.6.0/mlr3measures/man/measures.Rd | 3 mlr3measures-0.6.0/mlr3measures/man/mlr3measures-package.Rd | 7 mlr3measures-0.6.0/mlr3measures/man/npv.Rd | 13 - mlr3measures-0.6.0/mlr3measures/man/ppv.Rd | 13 - mlr3measures-0.6.0/mlr3measures/man/prauc.Rd | 13 - mlr3measures-0.6.0/mlr3measures/man/tn.Rd | 11 - mlr3measures-0.6.0/mlr3measures/man/tnr.Rd | 11 - mlr3measures-0.6.0/mlr3measures/man/tp.Rd | 9 - mlr3measures-0.6.0/mlr3measures/man/tpr.Rd | 9 - mlr3measures-0.6.0/mlr3measures/man/zero_one.Rd | 7 mlr3measures-0.6.0/mlr3measures/tests/testthat/test_classif.R | 4 45 files changed, 285 insertions(+), 203 deletions(-)
Title: Advanced Tables for Markdown/HTML
Description: Tables with state-of-the-art layout elements such as row spanners,
column spanners, table spanners, zebra striping, and more. While allowing
advanced layout, the underlying css-structure is simple in order to maximize
compatibility with common word processors. The package also contains a few
text formatting functions that help outputting text compatible with HTML/LaTeX.
Author: Max Gordon [aut, cre],
Stephen Gragg [aut],
Peter Konings [aut]
Maintainer: Max Gordon <max@gforge.se>
Diff between htmlTable versions 2.4.2 dated 2023-10-29 and 2.4.3 dated 2024-07-20
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- NEWS.md | 3 +++ build/vignette.rds |binary inst/doc/complex_tables.html | 6 +++--- inst/doc/general.html | 6 +++--- inst/doc/text_formatters.html | 6 +++--- inst/doc/tidyHtmlTable.html | 6 +++--- tests/testthat/test-tidyHtmlTable.R | 2 ++ tests/testthat/test-tidyHtmlTable_Hmisc_latex.R | 2 ++ tests/testthat/test-tidyHtmlTable_sorting.R | 2 ++ tests/testthat/test-txtFrmt.R | 2 ++ 12 files changed, 37 insertions(+), 26 deletions(-)
Title: Use Open Data from the Czech Statistical Office in R
Description: Get programmatic access to the open data provided by the
Czech Statistical Office (CZSO, <https://czso.cz>).
Author: Petr Bouchal [aut, cre] ,
Jindra Lacko [ctb]
Maintainer: Petr Bouchal <pbouchal@gmail.com>
Diff between czso versions 0.3.12 dated 2024-04-03 and 0.4.1 dated 2024-07-20
czso-0.3.12/czso/build |only czso-0.3.12/czso/man/get_catalogue.Rd |only czso-0.3.12/czso/man/get_czso_catalogue.Rd |only czso-0.3.12/czso/man/get_czso_dataset_doc.Rd |only czso-0.3.12/czso/man/get_czso_dataset_metadata.Rd |only czso-0.3.12/czso/man/get_czso_table_schema.Rd |only czso-0.3.12/czso/man/get_table.Rd |only czso-0.4.1/czso/DESCRIPTION | 8 - czso-0.4.1/czso/MD5 | 33 +--- czso-0.4.1/czso/NAMESPACE | 8 - czso-0.4.1/czso/NEWS.md | 10 + czso-0.4.1/czso/R/core.R | 168 ++++++++-------------- czso-0.4.1/czso/R/czso-package.R | 1 czso-0.4.1/czso/README.md | 2 czso-0.4.1/czso/man/czso_filter_catalogue.Rd |only czso-0.4.1/czso/man/czso_get_catalogue.Rd | 11 + czso-0.4.1/czso/man/czso_get_codelist.Rd | 3 czso-0.4.1/czso/man/czso_get_dataset_doc.Rd | 5 czso-0.4.1/czso/man/czso_get_dataset_metadata.Rd | 5 czso-0.4.1/czso/man/czso_get_table.Rd | 3 czso-0.4.1/czso/man/czso_get_table_schema.Rd | 5 21 files changed, 107 insertions(+), 155 deletions(-)
Title: Ordered Homogeneity Pursuit Lasso for Group Variable Selection
Description: Ordered homogeneity pursuit lasso (OHPL)
algorithm for group variable selection proposed in Lin et al. (2017)
<DOI:10.1016/j.chemolab.2017.07.004>. The OHPL method exploits the
homogeneity structure in high-dimensional data and enjoys the
grouping effect to select groups of important variables
automatically. This feature makes it particularly useful for
high-dimensional datasets with strongly correlated variables,
such as spectroscopic data.
Author: You-Wu Lin [aut],
Nan Xiao [aut, cre]
Maintainer: Nan Xiao <me@nanx.me>
Diff between OHPL versions 1.4 dated 2019-05-18 and 1.4.1 dated 2024-07-20
DESCRIPTION | 18 +++++++------- MD5 | 53 ++++++++++++++++++++++------------------- NEWS.md | 20 +++++++++++---- R/FOP.R | 12 ++++----- R/OHPL-datalist.R | 6 ++-- R/OHPL-package.R | 25 +++---------------- R/OHPL.R | 66 +++++++++++++++++++++++++--------------------------- R/OHPL.RMSEP.R | 22 +++++++---------- R/OHPL.sim.R | 14 +++++------ R/cv.OHPL.R | 63 ++++++++++++++++++++++++------------------------- R/dia.R | 8 +++--- R/dlc.R | 9 +++---- R/predict.OHPL.R | 9 +++---- R/proto.R | 41 ++++++++++++++------------------ R/single.beta.R | 2 - README.md | 42 +++++++++++++++++---------------- build |only inst/CITATION | 23 ++++++++---------- inst/logo |only man/FOP.Rd | 10 +++---- man/OHPL-package.Rd | 38 ++++++++++++++++++----------- man/OHPL.RMSEP.Rd | 17 ++++++------- man/OHPL.Rd | 44 +++++++++++++++++++--------------- man/OHPL.sim.Rd | 19 ++++++++++---- man/cv.OHPL.Rd | 38 ++++++++++++++++++----------- man/dlc.Rd | 10 +++---- man/figures |only man/predict.OHPL.Rd | 8 ++---- man/proto.Rd | 15 +++++------ 29 files changed, 323 insertions(+), 309 deletions(-)
Title: Extra Analysis Results Data Utilities
Description: Create extra Analysis Results Data (ARD) summary objects.
The package supplements the simple ARD functions from the 'cards'
package, exporting functions to put statistical results in the ARD
format. These objects are used and re-used to construct summary
tables, visualizations, and written reports.
Author: Daniel Sjoberg [aut, cre],
Abinaya Yogasekaram [aut],
Emily de la Rua [aut],
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Daniel Sjoberg <danield.sjoberg@gmail.com>
Diff between cardx versions 0.1.0 dated 2024-03-18 and 0.2.0 dated 2024-07-20
cardx-0.1.0/cardx/R/ard_chisqtest.R |only cardx-0.1.0/cardx/R/ard_fishertest.R |only cardx-0.1.0/cardx/R/ard_kruskaltest.R |only cardx-0.1.0/cardx/R/ard_mcnemartest.R |only cardx-0.1.0/cardx/R/ard_moodtest.R |only cardx-0.1.0/cardx/R/ard_proportion_ci.R |only cardx-0.1.0/cardx/R/ard_ttest.R |only cardx-0.1.0/cardx/R/ard_wilcoxtest.R |only cardx-0.1.0/cardx/man/ard_chisqtest.Rd |only cardx-0.1.0/cardx/man/ard_fishertest.Rd |only cardx-0.1.0/cardx/man/ard_kruskaltest.Rd |only cardx-0.1.0/cardx/man/ard_mcnemartest.Rd |only cardx-0.1.0/cardx/man/ard_moodtest.Rd |only cardx-0.1.0/cardx/man/ard_proportion_ci.Rd |only cardx-0.1.0/cardx/man/ard_ttest.Rd |only cardx-0.1.0/cardx/man/ard_wilcoxtest.Rd |only cardx-0.1.0/cardx/tests/testthat/_snaps/ard_chisqtest.md |only cardx-0.1.0/cardx/tests/testthat/_snaps/ard_kruskaltest.md |only cardx-0.1.0/cardx/tests/testthat/_snaps/ard_moodtest.md |only cardx-0.1.0/cardx/tests/testthat/_snaps/ard_ttest.md |only cardx-0.1.0/cardx/tests/testthat/test-ard_chisqtest.R |only cardx-0.1.0/cardx/tests/testthat/test-ard_fishertest.R |only cardx-0.1.0/cardx/tests/testthat/test-ard_kruskaltest.R |only cardx-0.1.0/cardx/tests/testthat/test-ard_mcnemartest.R |only cardx-0.1.0/cardx/tests/testthat/test-ard_moodtest.R |only cardx-0.1.0/cardx/tests/testthat/test-ard_ttest.R |only cardx-0.1.0/cardx/tests/testthat/test-ard_wilcoxtest.R |only cardx-0.2.0/cardx/DESCRIPTION | 22 cardx-0.2.0/cardx/MD5 | 232 +++++++--- cardx-0.2.0/cardx/NAMESPACE | 73 ++- cardx-0.2.0/cardx/NEWS.md | 56 ++ cardx-0.2.0/cardx/R/ard_aod_wald_test.R |only cardx-0.2.0/cardx/R/ard_attributes.survey.design.R |only cardx-0.2.0/cardx/R/ard_car_anova.R |only cardx-0.2.0/cardx/R/ard_car_vif.R |only cardx-0.2.0/cardx/R/ard_categorical.survey.design.R |only cardx-0.2.0/cardx/R/ard_categorical_ci.R |only cardx-0.2.0/cardx/R/ard_categorical_ci.survey.design.R |only cardx-0.2.0/cardx/R/ard_continuous.survey.design.R |only cardx-0.2.0/cardx/R/ard_continuous_ci.R |only cardx-0.2.0/cardx/R/ard_continuous_ci.survey.design.R |only cardx-0.2.0/cardx/R/ard_dichotomous.survey.design.R |only cardx-0.2.0/cardx/R/ard_effectsize_cohens_d.R |only cardx-0.2.0/cardx/R/ard_effectsize_hedges_g.R |only cardx-0.2.0/cardx/R/ard_emmeans_mean_difference.R |only cardx-0.2.0/cardx/R/ard_missing.survey.design.R |only cardx-0.2.0/cardx/R/ard_regression.R | 11 cardx-0.2.0/cardx/R/ard_regression_basic.R |only cardx-0.2.0/cardx/R/ard_smd_smd.R |only cardx-0.2.0/cardx/R/ard_stats_anova.R |only cardx-0.2.0/cardx/R/ard_stats_aov.R |only cardx-0.2.0/cardx/R/ard_stats_chisq_test.R |only cardx-0.2.0/cardx/R/ard_stats_fisher_test.R |only cardx-0.2.0/cardx/R/ard_stats_kruskal_test.R |only cardx-0.2.0/cardx/R/ard_stats_mcnemar_test.R |only cardx-0.2.0/cardx/R/ard_stats_mood_test.R |only cardx-0.2.0/cardx/R/ard_stats_oneway_test.R |only cardx-0.2.0/cardx/R/ard_stats_prop_test.R |only cardx-0.2.0/cardx/R/ard_stats_t_test.R |only cardx-0.2.0/cardx/R/ard_stats_t_test_onesample.R |only cardx-0.2.0/cardx/R/ard_stats_wilcox_test.R |only cardx-0.2.0/cardx/R/ard_stats_wilcox_test_onesample.R |only cardx-0.2.0/cardx/R/ard_survey_svychisq.R |only cardx-0.2.0/cardx/R/ard_survey_svyranktest.R |only cardx-0.2.0/cardx/R/ard_survey_svyttest.R |only cardx-0.2.0/cardx/R/ard_survival_survdiff.R |only cardx-0.2.0/cardx/R/ard_survival_survfit.R |only cardx-0.2.0/cardx/R/ard_survival_survfit_diff.R |only cardx-0.2.0/cardx/R/cardx-package.R | 1 cardx-0.2.0/cardx/R/construction_helpers.R |only cardx-0.2.0/cardx/R/import-standalone-check_pkg_installed.R |only cardx-0.2.0/cardx/R/import-standalone-checks.R | 122 +++-- cardx-0.2.0/cardx/R/import-standalone-cli_call_env.R |only cardx-0.2.0/cardx/R/import-standalone-forcats.R | 37 + cardx-0.2.0/cardx/R/import-standalone-stringr.R | 125 ++++- cardx-0.2.0/cardx/R/import-standalone-tibble.R |only cardx-0.2.0/cardx/R/proportion_ci.R | 61 ++ cardx-0.2.0/cardx/R/reexports.R | 21 cardx-0.2.0/cardx/README.md | 114 ++++ cardx-0.2.0/cardx/inst/WORDLIST | 32 - cardx-0.2.0/cardx/man/ard_aod_wald_test.Rd |only cardx-0.2.0/cardx/man/ard_attributes.Rd |only cardx-0.2.0/cardx/man/ard_car_anova.Rd |only cardx-0.2.0/cardx/man/ard_car_vif.Rd |only cardx-0.2.0/cardx/man/ard_categorical.survey.design.Rd |only cardx-0.2.0/cardx/man/ard_categorical_ci.Rd |only cardx-0.2.0/cardx/man/ard_categorical_ci.survey.design.Rd |only cardx-0.2.0/cardx/man/ard_continuous.survey.design.Rd |only cardx-0.2.0/cardx/man/ard_continuous_ci.Rd |only cardx-0.2.0/cardx/man/ard_continuous_ci.survey.design.Rd |only cardx-0.2.0/cardx/man/ard_dichotomous.survey.design.Rd |only cardx-0.2.0/cardx/man/ard_effectsize_cohens_d.Rd |only cardx-0.2.0/cardx/man/ard_effectsize_hedges_g.Rd |only cardx-0.2.0/cardx/man/ard_emmeans_mean_difference.Rd |only cardx-0.2.0/cardx/man/ard_missing.survey.design.Rd |only cardx-0.2.0/cardx/man/ard_regression.Rd | 4 cardx-0.2.0/cardx/man/ard_regression_basic.Rd |only cardx-0.2.0/cardx/man/ard_smd_smd.Rd |only cardx-0.2.0/cardx/man/ard_stats_anova.Rd |only cardx-0.2.0/cardx/man/ard_stats_aov.Rd |only cardx-0.2.0/cardx/man/ard_stats_chisq_test.Rd |only cardx-0.2.0/cardx/man/ard_stats_fisher_test.Rd |only cardx-0.2.0/cardx/man/ard_stats_kruskal_test.Rd |only cardx-0.2.0/cardx/man/ard_stats_mcnemar_test.Rd |only cardx-0.2.0/cardx/man/ard_stats_mood_test.Rd |only cardx-0.2.0/cardx/man/ard_stats_oneway_test.Rd |only cardx-0.2.0/cardx/man/ard_stats_prop_test.Rd |only cardx-0.2.0/cardx/man/ard_stats_t_test.Rd |only cardx-0.2.0/cardx/man/ard_stats_t_test_onesample.Rd |only cardx-0.2.0/cardx/man/ard_stats_wilcox_test.Rd |only cardx-0.2.0/cardx/man/ard_stats_wilcox_test_onesample.Rd |only cardx-0.2.0/cardx/man/ard_survey_svychisq.Rd |only cardx-0.2.0/cardx/man/ard_survey_svyranktest.Rd |only cardx-0.2.0/cardx/man/ard_survey_svyttest.Rd |only cardx-0.2.0/cardx/man/ard_survival_survdiff.Rd |only cardx-0.2.0/cardx/man/ard_survival_survfit.Rd |only cardx-0.2.0/cardx/man/ard_survival_survfit_diff.Rd |only cardx-0.2.0/cardx/man/cardx-package.Rd | 6 cardx-0.2.0/cardx/man/construction_helpers.Rd |only cardx-0.2.0/cardx/man/dot-check_dichotomous_value.Rd |only cardx-0.2.0/cardx/man/dot-extract_wald_results.Rd |only cardx-0.2.0/cardx/man/dot-format_cohens_d_results.Rd |only cardx-0.2.0/cardx/man/dot-format_hedges_g_results.Rd |only cardx-0.2.0/cardx/man/dot-format_mcnemartest_results.Rd |only cardx-0.2.0/cardx/man/dot-format_moodtest_results.Rd |only cardx-0.2.0/cardx/man/dot-format_proptest_results.Rd |only cardx-0.2.0/cardx/man/dot-format_survfit_results.Rd |only cardx-0.2.0/cardx/man/dot-format_ttest_results.Rd |only cardx-0.2.0/cardx/man/dot-format_wilcoxtest_results.Rd |only cardx-0.2.0/cardx/man/dot-paired_data_pivot_wider.Rd |only cardx-0.2.0/cardx/man/dot-process_nested_list_as_df.Rd |only cardx-0.2.0/cardx/man/dot-process_survfit_probs.Rd |only cardx-0.2.0/cardx/man/dot-process_survfit_time.Rd |only cardx-0.2.0/cardx/man/dot-strata_normal_quantile.Rd |only cardx-0.2.0/cardx/man/dot-unique_and_sorted.Rd |only cardx-0.2.0/cardx/man/dot-update_weights_strat_wilson.Rd |only cardx-0.2.0/cardx/man/figures/lifecycle-archived.svg |only cardx-0.2.0/cardx/man/figures/lifecycle-defunct.svg |only cardx-0.2.0/cardx/man/figures/lifecycle-deprecated.svg |only cardx-0.2.0/cardx/man/figures/lifecycle-experimental.svg |only cardx-0.2.0/cardx/man/figures/lifecycle-maturing.svg |only cardx-0.2.0/cardx/man/figures/lifecycle-questioning.svg |only cardx-0.2.0/cardx/man/figures/lifecycle-soft-deprecated.svg |only cardx-0.2.0/cardx/man/figures/lifecycle-stable.svg |only cardx-0.2.0/cardx/man/figures/lifecycle-superseded.svg |only cardx-0.2.0/cardx/man/figures/logo.png |binary cardx-0.2.0/cardx/man/proportion_ci.Rd | 30 + cardx-0.2.0/cardx/man/reexports.Rd | 7 cardx-0.2.0/cardx/tests/testthat/_snaps/ard_aod_wald_test.md |only cardx-0.2.0/cardx/tests/testthat/_snaps/ard_attributes.survey.design.md |only cardx-0.2.0/cardx/tests/testthat/_snaps/ard_car_anova.md |only cardx-0.2.0/cardx/tests/testthat/_snaps/ard_car_vif.md |only cardx-0.2.0/cardx/tests/testthat/_snaps/ard_categorical.survey.design.md |only cardx-0.2.0/cardx/tests/testthat/_snaps/ard_categorical_ci.survey.design.md |only cardx-0.2.0/cardx/tests/testthat/_snaps/ard_continuous.survey.design.md |only cardx-0.2.0/cardx/tests/testthat/_snaps/ard_continuous_ci.survey.design.md |only cardx-0.2.0/cardx/tests/testthat/_snaps/ard_dichotomous.survey.design.md |only cardx-0.2.0/cardx/tests/testthat/_snaps/ard_effectsize_cohens_d.md |only cardx-0.2.0/cardx/tests/testthat/_snaps/ard_effectsize_hedges_g.md |only cardx-0.2.0/cardx/tests/testthat/_snaps/ard_proportion_ci.md | 53 +- cardx-0.2.0/cardx/tests/testthat/_snaps/ard_regression.md | 116 ++--- cardx-0.2.0/cardx/tests/testthat/_snaps/ard_regression_basic.md |only cardx-0.2.0/cardx/tests/testthat/_snaps/ard_stats_aov.md |only cardx-0.2.0/cardx/tests/testthat/_snaps/ard_stats_chisq_test.md |only cardx-0.2.0/cardx/tests/testthat/_snaps/ard_stats_kruskal_test.md |only cardx-0.2.0/cardx/tests/testthat/_snaps/ard_stats_mood_test.md |only cardx-0.2.0/cardx/tests/testthat/_snaps/ard_stats_oneway_test.md |only cardx-0.2.0/cardx/tests/testthat/_snaps/ard_survey_svychisq.md |only cardx-0.2.0/cardx/tests/testthat/_snaps/ard_survey_svyranktest.md |only cardx-0.2.0/cardx/tests/testthat/_snaps/ard_survival_survfit.md |only cardx-0.2.0/cardx/tests/testthat/_snaps/ard_survival_survfit_diff.md |only cardx-0.2.0/cardx/tests/testthat/_snaps/construction_helpers.md |only cardx-0.2.0/cardx/tests/testthat/test-ard_aod_wald_test.R |only cardx-0.2.0/cardx/tests/testthat/test-ard_attributes.survey.design.R |only cardx-0.2.0/cardx/tests/testthat/test-ard_car_anova.R |only cardx-0.2.0/cardx/tests/testthat/test-ard_car_vif.R |only cardx-0.2.0/cardx/tests/testthat/test-ard_categorical.survey.design.R |only cardx-0.2.0/cardx/tests/testthat/test-ard_categorical_ci.survey.design.R |only cardx-0.2.0/cardx/tests/testthat/test-ard_continuous.survey.design.R |only cardx-0.2.0/cardx/tests/testthat/test-ard_continuous_ci.data.frame.R |only cardx-0.2.0/cardx/tests/testthat/test-ard_continuous_ci.survey.design.R |only cardx-0.2.0/cardx/tests/testthat/test-ard_dichotomous.survey.design.R |only cardx-0.2.0/cardx/tests/testthat/test-ard_effectsize_cohens_d.R |only cardx-0.2.0/cardx/tests/testthat/test-ard_effectsize_hedges_g.R |only cardx-0.2.0/cardx/tests/testthat/test-ard_emmeans_mean_difference.R |only cardx-0.2.0/cardx/tests/testthat/test-ard_missing.survey.design.R |only cardx-0.2.0/cardx/tests/testthat/test-ard_proportion_ci.R | 82 ++- cardx-0.2.0/cardx/tests/testthat/test-ard_regression.R | 34 + cardx-0.2.0/cardx/tests/testthat/test-ard_regression_basic.R |only cardx-0.2.0/cardx/tests/testthat/test-ard_smd_smd.R |only cardx-0.2.0/cardx/tests/testthat/test-ard_stats_anova.R |only cardx-0.2.0/cardx/tests/testthat/test-ard_stats_aov.R |only cardx-0.2.0/cardx/tests/testthat/test-ard_stats_chisq_test.R |only cardx-0.2.0/cardx/tests/testthat/test-ard_stats_fisher_test.R |only cardx-0.2.0/cardx/tests/testthat/test-ard_stats_kruskal_test.R |only cardx-0.2.0/cardx/tests/testthat/test-ard_stats_mcnemar_test.R |only cardx-0.2.0/cardx/tests/testthat/test-ard_stats_mood_test.R |only cardx-0.2.0/cardx/tests/testthat/test-ard_stats_oneway_test.R |only cardx-0.2.0/cardx/tests/testthat/test-ard_stats_prop_test.R |only cardx-0.2.0/cardx/tests/testthat/test-ard_stats_t_test.R |only cardx-0.2.0/cardx/tests/testthat/test-ard_stats_t_test_onesample.R |only cardx-0.2.0/cardx/tests/testthat/test-ard_stats_wilcox_test.R |only cardx-0.2.0/cardx/tests/testthat/test-ard_stats_wilcox_test_onesample.R |only cardx-0.2.0/cardx/tests/testthat/test-ard_survey_svychisq.R |only cardx-0.2.0/cardx/tests/testthat/test-ard_survey_svyranktest.R |only cardx-0.2.0/cardx/tests/testthat/test-ard_survey_svyttest.R |only cardx-0.2.0/cardx/tests/testthat/test-ard_survival_survdiff.R |only cardx-0.2.0/cardx/tests/testthat/test-ard_survival_survfit.R |only cardx-0.2.0/cardx/tests/testthat/test-ard_survival_survfit_diff.R |only cardx-0.2.0/cardx/tests/testthat/test-construction_helpers.R |only cardx-0.2.0/cardx/tests/testthat/test-proportion_ci.R | 2 211 files changed, 1000 insertions(+), 241 deletions(-)
Title: Cross-Platform Perl Based R Function to Create Excel 2003 (XLS)
and Excel 2007 (XLSX) Files
Description: Cross-platform Perl based R function to create Excel 2003 (XLS) and Excel 2007 (XLSX)
files from one or more data frames. Each data frame will be
written to a separate named worksheet in the Excel spreadsheet.
The worksheet name will be the name of the data frame it contains
or can be specified by the user.
Author: Marc Schwartz <marc_schwartz@me.com> and various authors for Perl modules listed in each .pm file.
Maintainer: Marc Schwartz <marc_schwartz@me.com>
Diff between WriteXLS versions 6.6.0 dated 2024-05-13 and 6.7.0 dated 2024-07-20
DESCRIPTION | 8 ++++---- INSTALL | 15 ++++++++++++--- MD5 | 12 ++++++------ inst/INSTALL | 15 ++++++++++++--- inst/Perl/WriteXLS.pl | 7 +++++++ inst/Perl/WriteXLSX.pl | 7 +++++++ man/WriteXLS.Rd | 6 ++++++ 7 files changed, 54 insertions(+), 16 deletions(-)
Title: Analysis Results Data
Description: Construct CDISC (Clinical Data Interchange Standards
Consortium) compliant Analysis Results Data objects. These objects are
used and re-used to construct summary tables, visualizations, and
written reports. The package also exports utilities for working with
these objects and creating new Analysis Results Data objects.
Author: Daniel D. Sjoberg [aut, cre] ,
Becca Krouse [aut],
Emily de la Rua [aut],
F. Hoffmann-La Roche AG [cph, fnd],
GlaxoSmithKline Research & Development Limited [cph]
Maintainer: Daniel D. Sjoberg <danield.sjoberg@gmail.com>
Diff between cards versions 0.1.0 dated 2024-02-26 and 0.2.0 dated 2024-07-20
cards-0.1.0/cards/R/check_pkg_installed.R |only cards-0.2.0/cards/DESCRIPTION | 22 cards-0.2.0/cards/MD5 | 195 ++++--- cards-0.2.0/cards/NAMESPACE | 16 cards-0.2.0/cards/NEWS.md | 45 + cards-0.2.0/cards/R/apply_fmt_fn.R | 70 +- cards-0.2.0/cards/R/ard_attributes.R | 55 +- cards-0.2.0/cards/R/ard_categorical.R | 153 +++-- cards-0.2.0/cards/R/ard_complex.R | 43 + cards-0.2.0/cards/R/ard_continuous.R | 61 +- cards-0.2.0/cards/R/ard_dichotomous.R | 84 ++- cards-0.2.0/cards/R/ard_hierarchical.R | 68 +- cards-0.2.0/cards/R/ard_missing.R | 77 ++ cards-0.2.0/cards/R/ard_stack.R | 119 +++- cards-0.2.0/cards/R/ard_total_n.R |only cards-0.2.0/cards/R/as_nested_list.R | 7 cards-0.2.0/cards/R/bind_ard.R | 8 cards-0.2.0/cards/R/check_ard_structure.R | 29 + cards-0.2.0/cards/R/default_stat_labels.R | 4 cards-0.2.0/cards/R/eval_capture_conditions.R | 10 cards-0.2.0/cards/R/get_ard_statistics.R | 5 cards-0.2.0/cards/R/import-standalone-check_pkg_installed.R |only cards-0.2.0/cards/R/import-standalone-checks.R | 27 - cards-0.2.0/cards/R/import-standalone-cli_call_env.R |only cards-0.2.0/cards/R/nest_for_ard.R | 63 +- cards-0.2.0/cards/R/print.R | 26 cards-0.2.0/cards/R/print_ard_conditions.R | 38 - cards-0.2.0/cards/R/process_selectors.R | 115 +++- cards-0.2.0/cards/R/replace_null_statistic.R | 2 cards-0.2.0/cards/R/shift_ard_columns.R |only cards-0.2.0/cards/R/shuffle_ard.R | 85 --- cards-0.2.0/cards/R/summary_functions.R | 87 --- cards-0.2.0/cards/R/tidy_ard_order.R | 4 cards-0.2.0/cards/R/tidy_as_ard.R | 2 cards-0.2.0/cards/R/utils.R | 3 cards-0.2.0/cards/README.md | 8 cards-0.2.0/cards/inst/WORDLIST | 7 cards-0.2.0/cards/man/alias_as_fmt_fn.Rd | 7 cards-0.2.0/cards/man/ard_attributes.Rd | 10 cards-0.2.0/cards/man/ard_categorical.Rd | 44 + cards-0.2.0/cards/man/ard_complex.Rd | 18 cards-0.2.0/cards/man/ard_continuous.Rd | 12 cards-0.2.0/cards/man/ard_dichotomous.Rd | 51 + cards-0.2.0/cards/man/ard_hierarchical.Rd | 63 ++ cards-0.2.0/cards/man/ard_missing.Rd | 16 cards-0.2.0/cards/man/ard_stack.Rd | 31 - cards-0.2.0/cards/man/ard_total_n.Rd |only cards-0.2.0/cards/man/bind_ard.Rd | 2 cards-0.2.0/cards/man/cards-package.Rd | 4 cards-0.2.0/cards/man/check_ard_structure.Rd | 8 cards-0.2.0/cards/man/check_pkg_installed.Rd | 45 + cards-0.2.0/cards/man/dot-calculate_stats_as_ard.Rd |only cards-0.2.0/cards/man/dot-calculate_tabulation_statistics.Rd |only cards-0.2.0/cards/man/dot-check_dichotomous_value.Rd |only cards-0.2.0/cards/man/dot-check_fmt_string.Rd |only cards-0.2.0/cards/man/dot-check_for_missing_combos_in_denom.Rd |only cards-0.2.0/cards/man/dot-check_no_ard_columns.Rd |only cards-0.2.0/cards/man/dot-check_var_nms.Rd |only cards-0.2.0/cards/man/dot-cli_condition_messaging.Rd |only cards-0.2.0/cards/man/dot-cli_groups_and_variable.Rd |only cards-0.2.0/cards/man/dot-create_list_for_attributes.Rd |only cards-0.2.0/cards/man/dot-default_fmt_fn.Rd |only cards-0.2.0/cards/man/dot-detect_msgs.Rd |only cards-0.2.0/cards/man/dot-eval_ard_calls.Rd |only cards-0.2.0/cards/man/dot-fill_grps_from_variables.Rd |only cards-0.2.0/cards/man/dot-is_list_column_of_scalars.Rd |only cards-0.2.0/cards/man/dot-is_named_list.Rd |only cards-0.2.0/cards/man/dot-lst_results_as_df.Rd |only cards-0.2.0/cards/man/dot-nesting_rename_ard_columns.Rd |only cards-0.2.0/cards/man/dot-one_row_ard_to_nested_list.Rd |only cards-0.2.0/cards/man/dot-pair_columns.Rd |only cards-0.2.0/cards/man/dot-process_denominator.Rd |only cards-0.2.0/cards/man/dot-process_nested_list_as_df.Rd |only cards-0.2.0/cards/man/dot-purrr_list_flatten.Rd |only cards-0.2.0/cards/man/dot-rename_last_group_as_variable.Rd |only cards-0.2.0/cards/man/dot-shift_column_pair.Rd |only cards-0.2.0/cards/man/dot-table_as_df.Rd |only cards-0.2.0/cards/man/dot-trim_ard.Rd |only cards-0.2.0/cards/man/dot-unique_and_sorted.Rd |only cards-0.2.0/cards/man/eval_capture_conditions.Rd | 4 cards-0.2.0/cards/man/figures/logo.png |binary cards-0.2.0/cards/man/get_ard_statistics.Rd | 2 cards-0.2.0/cards/man/nest_for_ard.Rd | 7 cards-0.2.0/cards/man/print.card.Rd | 9 cards-0.2.0/cards/man/print_ard_conditions.Rd | 12 cards-0.2.0/cards/man/process_selectors.Rd | 23 cards-0.2.0/cards/man/rename_ard_columns.Rd |only cards-0.2.0/cards/man/summary_functions.Rd | 43 - cards-0.2.0/cards/tests/testthat/_snaps/apply_fmt_fn.md | 20 cards-0.2.0/cards/tests/testthat/_snaps/ard_attributes.md | 10 cards-0.2.0/cards/tests/testthat/_snaps/ard_categorical.md | 24 cards-0.2.0/cards/tests/testthat/_snaps/ard_continuous.md | 28 - cards-0.2.0/cards/tests/testthat/_snaps/ard_dichotomous.md | 2 cards-0.2.0/cards/tests/testthat/_snaps/ard_hierarchical.md | 39 + cards-0.2.0/cards/tests/testthat/_snaps/ard_stack.md |only cards-0.2.0/cards/tests/testthat/_snaps/ard_total_n.md |only cards-0.2.0/cards/tests/testthat/_snaps/check_ard_structure.md | 1 cards-0.2.0/cards/tests/testthat/_snaps/check_pkg_installed.md |only cards-0.2.0/cards/tests/testthat/_snaps/eval_capture_conditions.md | 4 cards-0.2.0/cards/tests/testthat/_snaps/print.md | 18 cards-0.2.0/cards/tests/testthat/_snaps/print_ard_conditions.md | 19 cards-0.2.0/cards/tests/testthat/_snaps/process_selectors.md | 20 cards-0.2.0/cards/tests/testthat/_snaps/shift_ard_columns.md |only cards-0.2.0/cards/tests/testthat/_snaps/shuffle_ard.md | 24 cards-0.2.0/cards/tests/testthat/test-apply_fmt_fn.R | 2 cards-0.2.0/cards/tests/testthat/test-ard_attributes.R | 7 cards-0.2.0/cards/tests/testthat/test-ard_categorical.R | 261 +++++++--- cards-0.2.0/cards/tests/testthat/test-ard_complex.R | 6 cards-0.2.0/cards/tests/testthat/test-ard_continuous.R | 164 ++++++ cards-0.2.0/cards/tests/testthat/test-ard_hierarchical.R | 23 cards-0.2.0/cards/tests/testthat/test-ard_stack.R | 116 +++- cards-0.2.0/cards/tests/testthat/test-ard_total_n.R |only cards-0.2.0/cards/tests/testthat/test-check_pkg_installed.R | 59 +- cards-0.2.0/cards/tests/testthat/test-eval_capture_conditions.R | 4 cards-0.2.0/cards/tests/testthat/test-print_ard_conditions.R | 15 cards-0.2.0/cards/tests/testthat/test-process_selectors.R | 37 + cards-0.2.0/cards/tests/testthat/test-selectors.R | 2 cards-0.2.0/cards/tests/testthat/test-shift_ard_columns.R |only cards-0.2.0/cards/tests/testthat/test-shuffle_ard.R | 25 119 files changed, 1965 insertions(+), 914 deletions(-)
Title: Tools to Analyze Repertory Grid Data
Description: Analyze repertory grids, a qualitative-quantitative
data collection technique devised by George A. Kelly in the 1950s. Today, grids are used across
various domains ranging from clinical psychology to marketing. The package contains functions
to quantitatively analyze and visualize repertory grid data (e.g. 'Fransella', 'Bell', & 'Bannister',
2004, ISBN: 978-0-470-09080-0). The package is part of the The package is part of the
<https://openrepgrid.org/> project.
Author: Mark Heckmann [aut, cre, cph] ,
Alejandro Garcia Gutierrez [ctb],
Diego Vitali [ctb]
Maintainer: Mark Heckmann <heckmann.mark@gmail.com>
Diff between OpenRepGrid versions 0.1.14 dated 2023-05-16 and 0.1.15 dated 2024-07-20
OpenRepGrid-0.1.14/OpenRepGrid/man/bertinBase.Rd |only OpenRepGrid-0.1.14/OpenRepGrid/man/biplot3dBase2.Rd |only OpenRepGrid-0.1.15/OpenRepGrid/.aspell |only OpenRepGrid-0.1.15/OpenRepGrid/DESCRIPTION | 21 OpenRepGrid-0.1.15/OpenRepGrid/MD5 | 453 OpenRepGrid-0.1.15/OpenRepGrid/NAMESPACE | 7 OpenRepGrid-0.1.15/OpenRepGrid/NEWS.md | 445 OpenRepGrid-0.1.15/OpenRepGrid/R/bertin.r | 1616 +- OpenRepGrid-0.1.15/OpenRepGrid/R/calc.r | 3400 +++--- OpenRepGrid-0.1.15/OpenRepGrid/R/data-openrepgrid.r | 1152 +- OpenRepGrid-0.1.15/OpenRepGrid/R/dev-functions.r | 455 OpenRepGrid-0.1.15/OpenRepGrid/R/distance.R | 1580 +- OpenRepGrid-0.1.15/OpenRepGrid/R/double-entry.R | 30 OpenRepGrid-0.1.15/OpenRepGrid/R/export.r | 430 OpenRepGrid-0.1.15/OpenRepGrid/R/globals.R | 13 OpenRepGrid-0.1.15/OpenRepGrid/R/gmMain.r | 1833 +-- OpenRepGrid-0.1.15/OpenRepGrid/R/gridlist.R | 217 OpenRepGrid-0.1.15/OpenRepGrid/R/import.r | 3097 ++--- OpenRepGrid-0.1.15/OpenRepGrid/R/measures.r | 5412 ++++------ OpenRepGrid-0.1.15/OpenRepGrid/R/onair.r | 40 OpenRepGrid-0.1.15/OpenRepGrid/R/openrepgrid.r | 547 - OpenRepGrid-0.1.15/OpenRepGrid/R/perturbate.R | 126 OpenRepGrid-0.1.15/OpenRepGrid/R/repgrid-basicops.r | 3251 +++--- OpenRepGrid-0.1.15/OpenRepGrid/R/repgrid-constructs.r | 872 - OpenRepGrid-0.1.15/OpenRepGrid/R/repgrid-elements.r | 612 - OpenRepGrid-0.1.15/OpenRepGrid/R/repgrid-output.r | 1128 +- OpenRepGrid-0.1.15/OpenRepGrid/R/repgrid-plots.r | 3835 +++---- OpenRepGrid-0.1.15/OpenRepGrid/R/repgrid-ratings.r | 648 - OpenRepGrid-0.1.15/OpenRepGrid/R/repgrid.r | 166 OpenRepGrid-0.1.15/OpenRepGrid/R/resampling.R | 101 OpenRepGrid-0.1.15/OpenRepGrid/R/rgl-3d.r | 1363 +- OpenRepGrid-0.1.15/OpenRepGrid/R/settings.r | 374 OpenRepGrid-0.1.15/OpenRepGrid/R/utils-import.r | 891 - OpenRepGrid-0.1.15/OpenRepGrid/R/utils.r | 1934 +-- OpenRepGrid-0.1.15/OpenRepGrid/R/zzz.r | 85 OpenRepGrid-0.1.15/OpenRepGrid/build |only OpenRepGrid-0.1.15/OpenRepGrid/demo/OpenRepGrid.r | 105 OpenRepGrid-0.1.15/OpenRepGrid/inst/CITATION | 20 OpenRepGrid-0.1.15/OpenRepGrid/inst/examples/example-implicative-dilemmas.R | 38 OpenRepGrid-0.1.15/OpenRepGrid/inst/examples/example-indexBieri.R | 32 OpenRepGrid-0.1.15/OpenRepGrid/inst/examples/example-indexDDI.R |only OpenRepGrid-0.1.15/OpenRepGrid/inst/examples/example-indexDilemmatic.R | 12 OpenRepGrid-0.1.15/OpenRepGrid/inst/examples/example-indexPolarization.R | 14 OpenRepGrid-0.1.15/OpenRepGrid/inst/examples/example-indexSelfConstruction.R | 32 OpenRepGrid-0.1.15/OpenRepGrid/inst/examples/example-indexUncertainty.R |only OpenRepGrid-0.1.15/OpenRepGrid/inst/examples/example-matches.R | 22 OpenRepGrid-0.1.15/OpenRepGrid/inst/examples/example-perturbate.R | 14 OpenRepGrid-0.1.15/OpenRepGrid/inst/examples/example-resampling.R | 14 OpenRepGrid-0.1.15/OpenRepGrid/inst/extdata/dep_grid_bell_2001.xlsx |only OpenRepGrid-0.1.15/OpenRepGrid/inst/extdata/dep_grid_walker_1988_1.xlsx |only OpenRepGrid-0.1.15/OpenRepGrid/inst/extdata/dep_grid_walker_1988_2.xlsx |only OpenRepGrid-0.1.15/OpenRepGrid/man/OpenRepGrid-overview.Rd | 472 OpenRepGrid-0.1.15/OpenRepGrid/man/OpenRepGrid.Rd | 105 OpenRepGrid-0.1.15/OpenRepGrid/man/addAvgElement.Rd | 4 OpenRepGrid-0.1.15/OpenRepGrid/man/addConstruct.Rd | 10 OpenRepGrid-0.1.15/OpenRepGrid/man/addElement.Rd | 8 OpenRepGrid-0.1.15/OpenRepGrid/man/addIndexColumnToMatrix.Rd | 8 OpenRepGrid-0.1.15/OpenRepGrid/man/addVarianceExplainedToBiplot2d.Rd | 136 OpenRepGrid-0.1.15/OpenRepGrid/man/alignByIdeal.Rd | 121 OpenRepGrid-0.1.15/OpenRepGrid/man/alignByLoadings.Rd | 170 OpenRepGrid-0.1.15/OpenRepGrid/man/angleOrderIndexes2d.Rd | 23 OpenRepGrid-0.1.15/OpenRepGrid/man/apply_pb.Rd | 21 OpenRepGrid-0.1.15/OpenRepGrid/man/bertin.Rd | 242 OpenRepGrid-0.1.15/OpenRepGrid/man/bertinCluster.Rd | 312 OpenRepGrid-0.1.15/OpenRepGrid/man/bind.Rd | 94 OpenRepGrid-0.1.15/OpenRepGrid/man/bindConstructs.Rd | 89 OpenRepGrid-0.1.15/OpenRepGrid/man/biplot2d.Rd | 681 - OpenRepGrid-0.1.15/OpenRepGrid/man/biplot3d.Rd | 312 OpenRepGrid-0.1.15/OpenRepGrid/man/biplotDraw.Rd | 206 OpenRepGrid-0.1.15/OpenRepGrid/man/biplotEsa2d.Rd | 128 OpenRepGrid-0.1.15/OpenRepGrid/man/biplotEsa3d.Rd | 141 OpenRepGrid-0.1.15/OpenRepGrid/man/biplotEsaPseudo3d.Rd | 120 OpenRepGrid-0.1.15/OpenRepGrid/man/biplotPseudo3d.Rd | 89 OpenRepGrid-0.1.15/OpenRepGrid/man/biplotSimple.Rd | 254 OpenRepGrid-0.1.15/OpenRepGrid/man/biplotSlater2d.Rd | 48 OpenRepGrid-0.1.15/OpenRepGrid/man/biplotSlater3d.Rd | 71 OpenRepGrid-0.1.15/OpenRepGrid/man/biplotSlaterPseudo3d.Rd | 48 OpenRepGrid-0.1.15/OpenRepGrid/man/calcAngles.Rd | 60 OpenRepGrid-0.1.15/OpenRepGrid/man/calcBiplotCoords.Rd | 68 OpenRepGrid-0.1.15/OpenRepGrid/man/calcCoordsBorders.Rd | 88 OpenRepGrid-0.1.15/OpenRepGrid/man/cascade.Rd | 7 OpenRepGrid-0.1.15/OpenRepGrid/man/center.Rd | 26 OpenRepGrid-0.1.15/OpenRepGrid/man/clearRatings.Rd | 2 OpenRepGrid-0.1.15/OpenRepGrid/man/cluster.Rd | 198 OpenRepGrid-0.1.15/OpenRepGrid/man/clusterBoot.Rd | 257 OpenRepGrid-0.1.15/OpenRepGrid/man/colorize_matrix_rows.Rd | 6 OpenRepGrid-0.1.15/OpenRepGrid/man/constructCor.Rd | 40 OpenRepGrid-0.1.15/OpenRepGrid/man/constructD.Rd | 128 OpenRepGrid-0.1.15/OpenRepGrid/man/constructPca.Rd | 71 OpenRepGrid-0.1.15/OpenRepGrid/man/constructPcaLoadings.Rd | 17 OpenRepGrid-0.1.15/OpenRepGrid/man/constructRmsCor.Rd | 36 OpenRepGrid-0.1.15/OpenRepGrid/man/constructs.Rd | 134 OpenRepGrid-0.1.15/OpenRepGrid/man/convertImportObjectToRepGridObject.Rd | 7 OpenRepGrid-0.1.15/OpenRepGrid/man/convertScivescoImportObjectToRepGridObject.Rd | 9 OpenRepGrid-0.1.15/OpenRepGrid/man/data-bell2010.Rd | 17 OpenRepGrid-0.1.15/OpenRepGrid/man/data-bellmcgorry1992.Rd | 22 OpenRepGrid-0.1.15/OpenRepGrid/man/data-boeker.Rd | 17 OpenRepGrid-0.1.15/OpenRepGrid/man/data-fbb2003.Rd | 11 OpenRepGrid-0.1.15/OpenRepGrid/man/data-feixas2004.Rd | 48 OpenRepGrid-0.1.15/OpenRepGrid/man/data-leach2001.Rd | 58 OpenRepGrid-0.1.15/OpenRepGrid/man/data-mackay1992.Rd | 15 OpenRepGrid-0.1.15/OpenRepGrid/man/data-raeithel.Rd | 16 OpenRepGrid-0.1.15/OpenRepGrid/man/data-slater1977a.Rd | 6 OpenRepGrid-0.1.15/OpenRepGrid/man/data-slater1977b.Rd | 17 OpenRepGrid-0.1.15/OpenRepGrid/man/dim.repgrid.Rd | 9 OpenRepGrid-0.1.15/OpenRepGrid/man/dist_minmax.Rd | 3 OpenRepGrid-0.1.15/OpenRepGrid/man/distance.Rd | 163 OpenRepGrid-0.1.15/OpenRepGrid/man/distanceHartmann.Rd | 245 OpenRepGrid-0.1.15/OpenRepGrid/man/distanceNormalized.Rd | 251 OpenRepGrid-0.1.15/OpenRepGrid/man/distanceSlater.Rd | 167 OpenRepGrid-0.1.15/OpenRepGrid/man/doRectanglesOverlap.Rd | 42 OpenRepGrid-0.1.15/OpenRepGrid/man/doubleEntry.Rd | 4 OpenRepGrid-0.1.15/OpenRepGrid/man/elementCor.Rd | 140 OpenRepGrid-0.1.15/OpenRepGrid/man/elementRmsCor.Rd | 123 OpenRepGrid-0.1.15/OpenRepGrid/man/elements.Rd | 10 OpenRepGrid-0.1.15/OpenRepGrid/man/extract-methods.Rd | 10 OpenRepGrid-0.1.15/OpenRepGrid/man/figures/bertin-clustered.png |only OpenRepGrid-0.1.15/OpenRepGrid/man/formatMatrix.Rd | 74 OpenRepGrid-0.1.15/OpenRepGrid/man/getConstructNames.Rd | 4 OpenRepGrid-0.1.15/OpenRepGrid/man/getConstructNames2.Rd | 117 OpenRepGrid-0.1.15/OpenRepGrid/man/getElementNames.Rd | 4 OpenRepGrid-0.1.15/OpenRepGrid/man/getElementNames2.Rd | 89 OpenRepGrid-0.1.15/OpenRepGrid/man/getNoOfConstructs.Rd | 2 OpenRepGrid-0.1.15/OpenRepGrid/man/getNoOfElements.Rd | 2 OpenRepGrid-0.1.15/OpenRepGrid/man/getRatingLayer.Rd | 4 OpenRepGrid-0.1.15/OpenRepGrid/man/getScale.Rd | 4 OpenRepGrid-0.1.15/OpenRepGrid/man/getScaleMidpoint.Rd | 3 OpenRepGrid-0.1.15/OpenRepGrid/man/gridlist.Rd | 4 OpenRepGrid-0.1.15/OpenRepGrid/man/home.Rd | 21 OpenRepGrid-0.1.15/OpenRepGrid/man/importExcel.Rd | 27 OpenRepGrid-0.1.15/OpenRepGrid/man/importExcelInternal.Rd | 4 OpenRepGrid-0.1.15/OpenRepGrid/man/importGridcor.Rd | 35 OpenRepGrid-0.1.15/OpenRepGrid/man/importGridcorInternal.Rd | 13 OpenRepGrid-0.1.15/OpenRepGrid/man/importGridstat.Rd | 159 OpenRepGrid-0.1.15/OpenRepGrid/man/importGridstatInternal.Rd | 177 OpenRepGrid-0.1.15/OpenRepGrid/man/importGridsuite.Rd | 35 OpenRepGrid-0.1.15/OpenRepGrid/man/importGridsuiteInternal.Rd | 33 OpenRepGrid-0.1.15/OpenRepGrid/man/importScivesco.Rd | 141 OpenRepGrid-0.1.15/OpenRepGrid/man/importScivescoInternal.Rd | 122 OpenRepGrid-0.1.15/OpenRepGrid/man/importTxt.Rd | 200 OpenRepGrid-0.1.15/OpenRepGrid/man/importTxtInternal.Rd | 184 OpenRepGrid-0.1.15/OpenRepGrid/man/indexBias.Rd | 72 OpenRepGrid-0.1.15/OpenRepGrid/man/indexBieri.Rd | 9 OpenRepGrid-0.1.15/OpenRepGrid/man/indexConflict1.Rd | 93 OpenRepGrid-0.1.15/OpenRepGrid/man/indexConflict2.Rd | 172 OpenRepGrid-0.1.15/OpenRepGrid/man/indexConflict3.Rd | 233 OpenRepGrid-0.1.15/OpenRepGrid/man/indexDDI.Rd |only OpenRepGrid-0.1.15/OpenRepGrid/man/indexDilemma.Rd | 476 OpenRepGrid-0.1.15/OpenRepGrid/man/indexDilemmatic.Rd | 25 OpenRepGrid-0.1.15/OpenRepGrid/man/indexIntensity.Rd | 165 OpenRepGrid-0.1.15/OpenRepGrid/man/indexPolarization.Rd | 10 OpenRepGrid-0.1.15/OpenRepGrid/man/indexPvaff.Rd | 42 OpenRepGrid-0.1.15/OpenRepGrid/man/indexSelfConstruction.Rd | 158 OpenRepGrid-0.1.15/OpenRepGrid/man/indexUncertainty.Rd |only OpenRepGrid-0.1.15/OpenRepGrid/man/indexVariability.Rd | 17 OpenRepGrid-0.1.15/OpenRepGrid/man/lapply_pb.Rd | 9 OpenRepGrid-0.1.15/OpenRepGrid/man/makeRepgrid.Rd | 31 OpenRepGrid-0.1.15/OpenRepGrid/man/map.Rd | 9 OpenRepGrid-0.1.15/OpenRepGrid/man/mapCoordinatesToColor.Rd | 10 OpenRepGrid-0.1.15/OpenRepGrid/man/mapCoordinatesToValue.Rd | 48 OpenRepGrid-0.1.15/OpenRepGrid/man/matches.Rd | 14 OpenRepGrid-0.1.15/OpenRepGrid/man/modifyConstruct.Rd | 2 OpenRepGrid-0.1.15/OpenRepGrid/man/modifyElement.Rd | 82 OpenRepGrid-0.1.15/OpenRepGrid/man/move.Rd | 13 OpenRepGrid-0.1.15/OpenRepGrid/man/multigridFileToSinglegridFiles.Rd | 48 OpenRepGrid-0.1.15/OpenRepGrid/man/normalize.Rd | 61 OpenRepGrid-0.1.15/OpenRepGrid/man/ops-methods.Rd | 4 OpenRepGrid-0.1.15/OpenRepGrid/man/orderByString.Rd | 10 OpenRepGrid-0.1.15/OpenRepGrid/man/permuteConstructs.Rd | 7 OpenRepGrid-0.1.15/OpenRepGrid/man/permuteGrid.Rd | 18 OpenRepGrid-0.1.15/OpenRepGrid/man/perturbate.Rd | 2 OpenRepGrid-0.1.15/OpenRepGrid/man/prepareBiplotData.Rd | 29 OpenRepGrid-0.1.15/OpenRepGrid/man/print.alignByLoadings.Rd | 10 OpenRepGrid-0.1.15/OpenRepGrid/man/print.constructCor.Rd | 10 OpenRepGrid-0.1.15/OpenRepGrid/man/print.constructD.Rd | 8 OpenRepGrid-0.1.15/OpenRepGrid/man/print.constructPca.Rd | 5 OpenRepGrid-0.1.15/OpenRepGrid/man/print.distance.Rd | 14 OpenRepGrid-0.1.15/OpenRepGrid/man/print.elementCor.Rd | 10 OpenRepGrid-0.1.15/OpenRepGrid/man/print.hdistance.Rd | 98 OpenRepGrid-0.1.15/OpenRepGrid/man/print.indexBieri.Rd | 5 OpenRepGrid-0.1.15/OpenRepGrid/man/print.indexConflict2.Rd | 9 OpenRepGrid-0.1.15/OpenRepGrid/man/print.indexConflict3.Rd | 52 OpenRepGrid-0.1.15/OpenRepGrid/man/print.indexDilemma.Rd | 4 OpenRepGrid-0.1.15/OpenRepGrid/man/print.indexDilemmatic.Rd | 8 OpenRepGrid-0.1.15/OpenRepGrid/man/print.indexIntensity.Rd | 44 OpenRepGrid-0.1.15/OpenRepGrid/man/print.indexPolarization.Rd | 41 OpenRepGrid-0.1.15/OpenRepGrid/man/print.org.matches.Rd | 7 OpenRepGrid-0.1.15/OpenRepGrid/man/print.rmsCor.Rd | 2 OpenRepGrid-0.1.15/OpenRepGrid/man/print.ssq.Rd | 6 OpenRepGrid-0.1.15/OpenRepGrid/man/print.statsConstructs.Rd | 2 OpenRepGrid-0.1.15/OpenRepGrid/man/print.statsElements.Rd | 2 OpenRepGrid-0.1.15/OpenRepGrid/man/print_square_matrix.Rd | 6 OpenRepGrid-0.1.15/OpenRepGrid/man/quasiDistributionDistanceSlater.Rd | 23 OpenRepGrid-0.1.15/OpenRepGrid/man/randomGrid.Rd | 18 OpenRepGrid-0.1.15/OpenRepGrid/man/randomGrids.Rd | 20 OpenRepGrid-0.1.15/OpenRepGrid/man/randomSentence.Rd | 9 OpenRepGrid-0.1.15/OpenRepGrid/man/randomSentences.Rd | 8 OpenRepGrid-0.1.15/OpenRepGrid/man/randomWords.Rd | 4 OpenRepGrid-0.1.15/OpenRepGrid/man/ratings.Rd | 20 OpenRepGrid-0.1.15/OpenRepGrid/man/recycle.Rd | 22 OpenRepGrid-0.1.15/OpenRepGrid/man/recycle2.Rd | 12 OpenRepGrid-0.1.15/OpenRepGrid/man/reorder.Rd | 76 OpenRepGrid-0.1.15/OpenRepGrid/man/reorder2d.Rd | 38 OpenRepGrid-0.1.15/OpenRepGrid/man/rep.repgrid.Rd | 2 OpenRepGrid-0.1.15/OpenRepGrid/man/resampling.Rd | 6 OpenRepGrid-0.1.15/OpenRepGrid/man/reverse.Rd | 83 OpenRepGrid-0.1.15/OpenRepGrid/man/rglDrawStandardAxes.Rd | 76 OpenRepGrid-0.1.15/OpenRepGrid/man/ring.Rd | 9 OpenRepGrid-0.1.15/OpenRepGrid/man/sapply_pb.Rd | 17 OpenRepGrid-0.1.15/OpenRepGrid/man/saveAsExcel.Rd | 11 OpenRepGrid-0.1.15/OpenRepGrid/man/saveAsTxt.Rd | 137 OpenRepGrid-0.1.15/OpenRepGrid/man/setConstructAttr.Rd | 11 OpenRepGrid-0.1.15/OpenRepGrid/man/setElementAttr.Rd | 16 OpenRepGrid-0.1.15/OpenRepGrid/man/setMeta.Rd | 2 OpenRepGrid-0.1.15/OpenRepGrid/man/setScale.Rd | 12 OpenRepGrid-0.1.15/OpenRepGrid/man/settings.Rd | 32 OpenRepGrid-0.1.15/OpenRepGrid/man/shift.Rd | 9 OpenRepGrid-0.1.15/OpenRepGrid/man/showMeta.Rd | 2 OpenRepGrid-0.1.15/OpenRepGrid/man/showScale.Rd | 4 OpenRepGrid-0.1.15/OpenRepGrid/man/ssq.Rd | 189 OpenRepGrid-0.1.15/OpenRepGrid/man/stats.Rd | 87 OpenRepGrid-0.1.15/OpenRepGrid/man/stepChart.Rd | 17 OpenRepGrid-0.1.15/OpenRepGrid/man/stop_if_not_0_1_ratings_only.Rd |only OpenRepGrid-0.1.15/OpenRepGrid/man/subassign.Rd | 16 OpenRepGrid-0.1.15/OpenRepGrid/man/swapConstructs.Rd | 7 OpenRepGrid-0.1.15/OpenRepGrid/man/swapElements.Rd | 7 OpenRepGrid-0.1.15/OpenRepGrid/man/trim_val.Rd | 60 OpenRepGrid-0.1.15/OpenRepGrid/tests/testthat.R | 10 OpenRepGrid-0.1.15/OpenRepGrid/tests/testthat/_snaps |only OpenRepGrid-0.1.15/OpenRepGrid/tests/testthat/test-basicops.R | 98 OpenRepGrid-0.1.15/OpenRepGrid/tests/testthat/test-gridlist.R |only OpenRepGrid-0.1.15/OpenRepGrid/tests/testthat/test-indexes.R | 294 OpenRepGrid-0.1.15/OpenRepGrid/tests/testthat/test-ratings_df.R | 12 OpenRepGrid-0.1.15/OpenRepGrid/tests/testthat/test_bertin.R |only OpenRepGrid-0.1.15/OpenRepGrid/tests/testthat/test_biplot.R |only 235 files changed, 23973 insertions(+), 24071 deletions(-)
Title: R Interface to 'Quarto' Markdown Publishing System
Description: Convert R Markdown documents and 'Jupyter' notebooks to a
variety of output formats using 'Quarto'.
Author: JJ Allaire [aut] ,
Christophe Dervieux [cre, aut]
,
Posit Software, PBC [cph, fnd]
Maintainer: Christophe Dervieux <cderv@posit.co>
Diff between quarto versions 1.4 dated 2024-03-06 and 1.4.4 dated 2024-07-20
DESCRIPTION | 12 +-- MD5 | 46 ++++++------ NEWS.md | 68 ++++++++++--------- R/add.R | 9 +- R/daemon.R | 17 ++++ R/render.R | 17 ++-- R/run.R | 4 - R/use.R | 20 +++-- R/utils-prompt.R | 36 +++++----- R/utils.R | 4 + inst/doc/hello-pdf.pdf |binary inst/doc/hello.html | 19 ++--- inst/doc/hello.qmd | 7 + inst/doc/publishing.html | 4 - man/quarto_add_extension.Rd | 7 + man/quarto_create_project.Rd | 7 + man/quarto_inspect.Rd | 7 + man/quarto_render.Rd | 17 ++-- man/quarto_serve.Rd | 4 - man/quarto_use_template.Rd | 7 + tests/testthat/helper.R | 16 +++- tests/testthat/test-add.R | 18 ++--- tests/testthat/test-quarto.R | 153 +++++++++++++++++++++---------------------- vignettes/hello.qmd | 7 + 24 files changed, 279 insertions(+), 227 deletions(-)
Title: Automated Tool for Vertical Fuel Continuity Analysis using
Airborne Laser Scanning Data
Description: Set of tools for analyzing vertical fuel continuity at the tree level using Airborne Laser Scanning data. The workflow consisted of: 1) calculating the vertical height profiles of each segmented tree; 2) identifying gaps and fuel layers; 3) estimating the distance between fuel layers; and 4) retrieving the fuel layers base height and depth. Additionally, other functions recalculate previous metrics after considering distances greater than certain threshold. Moreover, the package calculates: i) the percentage of Leaf Area Density comprised in each fuel layer, ii) remove fuel layers with Leaf Area Density (LAD) percentage less than 10, and iii) recalculate the distances among the reminder ones. On the other hand, it identifies the crown base height (CBH) based on different criteria: the fuel layer with the highest LAD percentage and the fuel layers located at the largest- and at the last-distance. When there is only one fuel layer, it also identifies the CBH performing a segmented linear [...truncated...]
Author: Olga Viedma [aut, cph, cre],
Carlos Alberto Silva [aut, cph],
Jose Manuel Moreno [aut, cph],
Andrew T. Hudak [aut, cph]
Maintainer: Olga Viedma <olga.viedma@uclm.es>
Diff between LadderFuelsR versions 0.0.5 dated 2024-07-07 and 0.0.6 dated 2024-07-20
DESCRIPTION | 6 ++-- MD5 | 14 +++++----- R/cbh_metrics.R | 59 +++++++++++++++++++++++++++++++++++++--------- R/depths_calculation.R | 18 ++++++++++---- R/distances_calculation.R | 26 +++++++++++++++----- R/gap_fbh.R | 12 ++++----- R/plot_cbh_maxlad.R | 49 ++++++++++++++++++++++++++++++++++++++ man/get_cbh_metrics.Rd | 14 ++++++++-- 8 files changed, 157 insertions(+), 41 deletions(-)
Title: Simulate DNA Methylation Dynamics on Different Genomic
Structures along Genealogies
Description: DNA methylation is an epigenetic modification involved in genomic stability,
gene regulation, development and disease.
DNA methylation occurs mainly through the addition of a methyl group to cytosines,
for example to cytosines in a CpG dinucleotide context (CpG stands for a cytosine followed by a guanine).
Tissue-specific methylation patterns lead to genomic regions with different characteristic
methylation levels.
E.g. in vertebrates CpG islands (regions with high CpG content) that are associated to promoter regions of
expressed genes tend to be unmethylated.
'MethEvolSIM' is a model-based simulation software for the generation and modification
of cytosine methylation patterns along a given tree, which can be a genealogy of
cells within an organism, a coalescent tree of DNA sequences sampled from a population, or a species tree.
The simulations are based on an extension of the model of
Grosser & Metzler (2020) <doi:10.1186/s12859-020-3438-5> and allows for changes of
the met [...truncated...]
Author: Sara Castillo Vicente [aut, cre],
Dirk Metzler [aut, ths]
Maintainer: Sara Castillo Vicente <castillo@bio.lmu.de>
Diff between MethEvolSIM versions 0.1.2 dated 2024-05-24 and 0.1.3 dated 2024-07-20
DESCRIPTION | 8 - MD5 | 16 +- R/QC.R | 8 - R/multiRegion_SIM.R | 164 +++++++++++++++++++++++++-- inst/doc/intro-vignette.Rmd | 2 inst/doc/intro-vignette.html | 43 +++---- man/singleStructureGenerator.Rd | 97 ++++++++++++++++ tests/testthat/test-multiRegion_SIM.R | 200 +++++++++++++++++++++++++++++++++- vignettes/intro-vignette.Rmd | 2 9 files changed, 485 insertions(+), 55 deletions(-)