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2022-07-14 2.1-14
Title: Data from the 'Access to Opportunities Project (AOP)'
Description: Download data from the 'Access to Opportunities Project (AOP)'. The
'aopdata' package brings annual estimates of access to employment,
health, education and social assistance services by transport mode,
as well as data on the spatial distribution of population, jobs,
health care, schools and social assistance facilities at a fine
spatial resolution for all cities included in the project. More
info on the 'AOP' website <https://www.ipea.gov.br/acessooportunidades/en/>.
Author: Rafael H. M. Pereira [aut, cre]
,
Daniel Herszenhut [aut] ,
Marcus Saraiva [aut] ,
Carlos Kaue Vieira Braga [aut]
,
Diego Bogado Tomasiello [ctb],
Joao Bazzo [ctb],
Ipea - Institute for Applied Economic Research [cph, fnd]
Maintainer: Rafael H. M. Pereira <rafa.pereira.br@gmail.com>
Diff between aopdata versions 1.0.3 dated 2023-08-31 and 1.1.0 dated 2024-08-27
DESCRIPTION | 15 +-- MD5 | 48 +++++------ NEWS.md | 9 ++ R/download_metadata.R | 5 - R/read_access.R | 13 ++ R/read_grid.R | 4 R/read_landuse.R | 13 ++ R/read_population.R | 9 +- R/utils.R | 174 +++++++++++++++------------------------- inst/doc/access_inequality.R | 14 +-- inst/doc/access_inequality.html | 35 ++++---- inst/doc/access_maps.R | 10 +- inst/doc/access_maps.html | 11 +- inst/doc/data_dic_en.R | 2 inst/doc/data_dic_en.html | 4 inst/doc/data_dic_pt.R | 2 inst/doc/data_dic_pt.html | 4 inst/doc/intro_to_aopdata.R | 20 ++-- inst/doc/intro_to_aopdata.html | 4 inst/doc/landuse_maps.R | 14 +-- inst/doc/landuse_maps.html | 6 - inst/doc/population_maps.R | 12 +- inst/doc/population_maps.html | 8 - man/aopdata.Rd | 2 man/check_downloaded_obj.Rd |only tests/tests_rafa |only 26 files changed, 221 insertions(+), 217 deletions(-)
Title: Spatial Statistical Modeling and Prediction
Description: Fit, summarize, and predict for a variety of spatial statistical models applied to point-referenced and areal (lattice) data. Parameters are estimated using various methods. Additional modeling features include anisotropy, non-spatial random effects, partition factors, big data approaches, and more. Model-fit statistics are used to summarize, visualize, and compare models. Predictions at unobserved locations are readily obtainable. For additional details, see Dumelle et al. (2023) <doi:10.1371/journal.pone.0282524>.
Author: Michael Dumelle [aut, cre] ,
Matt Higham [aut] ,
Ryan A. Hill [ctb] ,
Michael Mahon [ctb] ,
Jay M. Ver Hoef [aut]
Maintainer: Michael Dumelle <Dumelle.Michael@epa.gov>
Diff between spmodel versions 0.7.0 dated 2024-07-18 and 0.8.0 dated 2024-08-27
spmodel-0.7.0/spmodel/R/AIC.R |only spmodel-0.7.0/spmodel/R/AIC_glm.R |only spmodel-0.7.0/spmodel/R/BIC.R |only spmodel-0.7.0/spmodel/R/BIC_glm.R |only spmodel-0.7.0/spmodel/man/AIC.spmodel.Rd |only spmodel-0.7.0/spmodel/man/BIC.spmodel.Rd |only spmodel-0.8.0/spmodel/DESCRIPTION | 14 spmodel-0.8.0/spmodel/MD5 | 149 spmodel-0.8.0/spmodel/NAMESPACE | 10 spmodel-0.8.0/spmodel/NEWS.md | 383 + spmodel-0.8.0/spmodel/R/AIC_deprecated.R |only spmodel-0.8.0/spmodel/R/AIC_glm_deprecated.R |only spmodel-0.8.0/spmodel/R/AICc.R |only spmodel-0.8.0/spmodel/R/AICc_glm.R |only spmodel-0.8.0/spmodel/R/AUROC.R | 116 spmodel-0.8.0/spmodel/R/BIC_deprecated.R |only spmodel-0.8.0/spmodel/R/BIC_glm_deprecated.R |only spmodel-0.8.0/spmodel/R/augment_glm.R | 58 spmodel-0.8.0/spmodel/R/cov_initial_search.R | 2274 +++++------ spmodel-0.8.0/spmodel/R/cov_initial_search_glm.R | 2108 +++++----- spmodel-0.8.0/spmodel/R/covmatrix.R | 77 spmodel-0.8.0/spmodel/R/data.R | 68 spmodel-0.8.0/spmodel/R/emmeans.R |only spmodel-0.8.0/spmodel/R/esv.R | 73 spmodel-0.8.0/spmodel/R/get_data_object.R | 1087 ++--- spmodel-0.8.0/spmodel/R/get_data_object_glm.R | 1223 +++--- spmodel-0.8.0/spmodel/R/get_deviance_glm.R | 4 spmodel-0.8.0/spmodel/R/get_esv.R |only spmodel-0.8.0/spmodel/R/get_esv_dotlist.R | 34 spmodel-0.8.0/spmodel/R/get_local_list.R | 316 - spmodel-0.8.0/spmodel/R/glance.R | 120 spmodel-0.8.0/spmodel/R/glances.R | 236 - spmodel-0.8.0/spmodel/R/glances_glm.R | 79 spmodel-0.8.0/spmodel/R/influence_glm.R | 13 spmodel-0.8.0/spmodel/R/logLik.R | 12 spmodel-0.8.0/spmodel/R/loocv_glm.R | 618 +-- spmodel-0.8.0/spmodel/R/predict.R | 2348 ++++++------ spmodel-0.8.0/spmodel/R/predict_glm.R | 1875 ++++----- spmodel-0.8.0/spmodel/R/predict_terms.R |only spmodel-0.8.0/spmodel/R/spautor.R | 552 +- spmodel-0.8.0/spmodel/R/spgautor.R | 751 +-- spmodel-0.8.0/spmodel/R/spglm.R | 948 ++-- spmodel-0.8.0/spmodel/R/splm.R | 812 ++-- spmodel-0.8.0/spmodel/R/spmodel-package.R | 34 spmodel-0.8.0/spmodel/R/utils.R | 66 spmodel-0.8.0/spmodel/R/zzz.R |only spmodel-0.8.0/spmodel/README.md | 202 - spmodel-0.8.0/spmodel/build/partial.rdb |binary spmodel-0.8.0/spmodel/build/vignette.rds |binary spmodel-0.8.0/spmodel/data/lake.rda |only spmodel-0.8.0/spmodel/data/lake_preds.rda |only spmodel-0.8.0/spmodel/data/moose.rda |binary spmodel-0.8.0/spmodel/data/moose_preds.rda |binary spmodel-0.8.0/spmodel/data/sulfate.rda |binary spmodel-0.8.0/spmodel/data/texas.rda |only spmodel-0.8.0/spmodel/inst/doc/introduction.R | 2 spmodel-0.8.0/spmodel/inst/doc/introduction.Rmd | 800 ++-- spmodel-0.8.0/spmodel/inst/doc/introduction.html | 75 spmodel-0.8.0/spmodel/inst/references.bib | 1551 ++++--- spmodel-0.8.0/spmodel/man/AICc.Rd |only spmodel-0.8.0/spmodel/man/AUROC.Rd | 80 spmodel-0.8.0/spmodel/man/augment.spmodel.Rd | 14 spmodel-0.8.0/spmodel/man/covmatrix.Rd | 21 spmodel-0.8.0/spmodel/man/esv.Rd | 30 spmodel-0.8.0/spmodel/man/glance.spmodel.Rd | 2 spmodel-0.8.0/spmodel/man/glances.Rd | 23 spmodel-0.8.0/spmodel/man/lake.Rd |only spmodel-0.8.0/spmodel/man/lake_preds.Rd |only spmodel-0.8.0/spmodel/man/moose.Rd | 2 spmodel-0.8.0/spmodel/man/moose_preds.Rd | 2 spmodel-0.8.0/spmodel/man/moss.Rd | 2 spmodel-0.8.0/spmodel/man/predict.spmodel.Rd | 57 spmodel-0.8.0/spmodel/man/spautor.Rd | 11 spmodel-0.8.0/spmodel/man/spgautor.Rd | 11 spmodel-0.8.0/spmodel/man/spmodel-package.Rd | 1 spmodel-0.8.0/spmodel/man/sulfate.Rd | 2 spmodel-0.8.0/spmodel/man/texas.Rd |only spmodel-0.8.0/spmodel/tests/testthat/test-extras-spautor.R | 32 spmodel-0.8.0/spmodel/tests/testthat/test-extras-spgautor.R | 24 spmodel-0.8.0/spmodel/tests/testthat/test-extras-spglm.R | 16 spmodel-0.8.0/spmodel/tests/testthat/test-extras-splm.R | 26 spmodel-0.8.0/spmodel/tests/testthat/test-extras.R | 155 spmodel-0.8.0/spmodel/tests/testthat/test-spautor.R | 822 ++-- spmodel-0.8.0/spmodel/tests/testthat/test-spgautor.R | 870 ++-- spmodel-0.8.0/spmodel/tests/testthat/test-spglm.R | 955 ++-- spmodel-0.8.0/spmodel/tests/testthat/test-splm.R | 887 ++-- spmodel-0.8.0/spmodel/vignettes/introduction.Rmd | 800 ++-- 87 files changed, 12434 insertions(+), 11499 deletions(-)
Title: Fast, Sensitive, and Accurate Integration of Single Cell Data
Description: Implementation of the Harmony algorithm for single cell integration, described in Korsunsky et al <doi:10.1038/s41592-019-0619-0>. Package includes a standalone Harmony function and interfaces to external frameworks.
Author: Ilya Korsunsky [cre, aut] ,
Martin Hemberg [aut] ,
Nikolaos Patikas [aut, ctb] ,
Hongcheng Yao [aut, ctb] ,
Nghia Millard [aut] ,
Jean Fan [aut, ctb] ,
Kamil Slowikowski [aut, ctb] ,
Miles Smith [ctb],
Soumya Raychaudhuri [aut]
Maintainer: Ilya Korsunsky <ilya.korsunsky@gmail.com>
Diff between harmony versions 1.2.0 dated 2023-11-29 and 1.2.1 dated 2024-08-27
harmony-1.2.0/harmony/src/timer.cpp |only harmony-1.2.0/harmony/src/timer.h |only harmony-1.2.0/harmony/src/timers.h |only harmony-1.2.1/harmony/DESCRIPTION | 14 harmony-1.2.1/harmony/MD5 | 35 harmony-1.2.1/harmony/R/harmony_option.R | 6 harmony-1.2.1/harmony/R/ui.R | 6 harmony-1.2.1/harmony/build/partial.rdb |binary harmony-1.2.1/harmony/build/vignette.rds |binary harmony-1.2.1/harmony/inst/doc/Seurat.html | 193 +- harmony-1.2.1/harmony/inst/doc/detailedWalkthrough.html | 708 +++++------ harmony-1.2.1/harmony/inst/doc/quickstart.Rmd | 4 harmony-1.2.1/harmony/inst/doc/quickstart.html | 110 - harmony-1.2.1/harmony/man/HarmonyMatrix.Rd | 6 harmony-1.2.1/harmony/man/RunHarmony.Rd | 6 harmony-1.2.1/harmony/man/RunHarmony.Seurat.Rd | 6 harmony-1.2.1/harmony/man/RunHarmony.SingleCellExperiment.Rd | 6 harmony-1.2.1/harmony/man/RunHarmony.default.Rd | 6 harmony-1.2.1/harmony/man/harmony_options.Rd | 8 harmony-1.2.1/harmony/vignettes/quickstart.Rmd | 4 20 files changed, 555 insertions(+), 563 deletions(-)
Title: Marginal Modeling for Exposure Data with Values Below the LOD
Description: Functions of marginal mean and quantile regression models are used to analyze environmental exposure and biomonitoring data with repeated measurements and non-detects, as well as longitudinal exposure data that include non-detects and time-dependent covariates.
Author: I-Chen Chen [cre, aut] ,
Philip Westgate [ctb],
Liya Fu [ctb]
Maintainer: I-Chen Chen <okv0@cdc.gov>
Diff between marlod versions 0.1.0 dated 2024-08-23 and 0.1.1 dated 2024-08-27
DESCRIPTION | 16 ++++----- MD5 | 4 +- inst/doc/marlod.html | 88 +++++++++++++++++++++++++-------------------------- 3 files changed, 54 insertions(+), 54 deletions(-)
Title: Access Formula 1 Data
Description: Obtain Formula 1 data via the 'Ergast API' <https://ergast.com/mrd/> and the unofficial API <https://www.formula1.com/en/timing/f1-live> via the 'fastf1' 'Python' library <https://docs.fastf1.dev/>.
Author: Santiago Casanova [aut, cre, cph],
Philip Bulsink [aut]
Maintainer: Santiago Casanova <santiago.casanova@yahoo.com>
Diff between f1dataR versions 1.5.3 dated 2024-05-01 and 1.6.0 dated 2024-08-27
f1dataR-1.5.3/f1dataR/R/data.R |only f1dataR-1.5.3/f1dataR/data |only f1dataR-1.5.3/f1dataR/man/constructor_data.Rd |only f1dataR-1.5.3/f1dataR/vignettes/Thumbs.db |only f1dataR-1.5.3/f1dataR/vignettes/alonso-penalty-2024alo-plots-1.png |only f1dataR-1.5.3/f1dataR/vignettes/alonso-penalty-2024alo-throttle-1.png |only f1dataR-1.5.3/f1dataR/vignettes/alonso-penalty-2024rus-plots-1.png |only f1dataR-1.6.0/f1dataR/DESCRIPTION | 12 f1dataR-1.6.0/f1dataR/MD5 | 111 ++--- f1dataR-1.6.0/f1dataR/NAMESPACE | 14 f1dataR-1.6.0/f1dataR/NEWS.md | 14 f1dataR-1.6.0/f1dataR/R/load_race_session.R | 11 f1dataR-1.6.0/f1dataR/R/load_session_laps.R | 12 f1dataR-1.6.0/f1dataR/R/plot_fastest.R | 47 +- f1dataR-1.6.0/f1dataR/R/plotting_style.R |only f1dataR-1.6.0/f1dataR/R/utils.R | 6 f1dataR-1.6.0/f1dataR/README.md | 68 ++- f1dataR-1.6.0/f1dataR/inst/doc/alonso-penalty-2024.Rmd | 121 +++-- f1dataR-1.6.0/f1dataR/inst/doc/alonso-penalty-2024.html | 123 +++-- f1dataR-1.6.0/f1dataR/inst/doc/ergast-data-analysis.Rmd | 148 +++++- f1dataR-1.6.0/f1dataR/inst/doc/ergast-data-analysis.html | 215 ++++++---- f1dataR-1.6.0/f1dataR/inst/doc/introduction.Rmd | 65 +-- f1dataR-1.6.0/f1dataR/inst/doc/introduction.html | 87 ++-- f1dataR-1.6.0/f1dataR/inst/doc/plotting-turn-info.Rmd | 50 +- f1dataR-1.6.0/f1dataR/inst/doc/plotting-turn-info.html | 74 +-- f1dataR-1.6.0/f1dataR/inst/doc/setup_fastf1.R | 2 f1dataR-1.6.0/f1dataR/inst/doc/setup_fastf1.Rmd | 3 f1dataR-1.6.0/f1dataR/inst/doc/setup_fastf1.html | 5 f1dataR-1.6.0/f1dataR/man/driver_team_lookup.Rd |only f1dataR-1.6.0/f1dataR/man/figures/README-plot-1.png |binary f1dataR-1.6.0/f1dataR/man/get_aesthetics.Rd |only f1dataR-1.6.0/f1dataR/man/get_session.Rd |only f1dataR-1.6.0/f1dataR/man/get_tire_compounds.Rd |only f1dataR-1.6.0/f1dataR/man/load_race_session.Rd | 2 f1dataR-1.6.0/f1dataR/man/load_session_laps.Rd | 11 f1dataR-1.6.0/f1dataR/man/plot_fastest.Rd | 3 f1dataR-1.6.0/f1dataR/tests/testthat/test-clear_f1_cache.R | 6 f1dataR-1.6.0/f1dataR/tests/testthat/test-load_circuit_details.R | 1 f1dataR-1.6.0/f1dataR/tests/testthat/test-load_driver_telemetry.R | 27 - f1dataR-1.6.0/f1dataR/tests/testthat/test-load_race_session.R | 31 - f1dataR-1.6.0/f1dataR/tests/testthat/test-load_session_laps.R | 19 f1dataR-1.6.0/f1dataR/tests/testthat/test-plot_fastest.R | 21 f1dataR-1.6.0/f1dataR/tests/testthat/test-plotting_style.R |only f1dataR-1.6.0/f1dataR/vignettes/alonso-penalty-2024-alo-plots-1.png |only f1dataR-1.6.0/f1dataR/vignettes/alonso-penalty-2024-alo-throttle-1.png |only f1dataR-1.6.0/f1dataR/vignettes/alonso-penalty-2024-rus-plots-1.png |only f1dataR-1.6.0/f1dataR/vignettes/alonso-penalty-2024.Rmd | 121 +++-- f1dataR-1.6.0/f1dataR/vignettes/alonso-penalty-2024.Rmd.orig | 50 +- f1dataR-1.6.0/f1dataR/vignettes/ergast-data-analysis-driver_laptime_scatterplot-1.png |binary f1dataR-1.6.0/f1dataR/vignettes/ergast-data-analysis-drivers_laptimes-1.png |binary f1dataR-1.6.0/f1dataR/vignettes/ergast-data-analysis-grid_to_finish_one-1.png |binary f1dataR-1.6.0/f1dataR/vignettes/ergast-data-analysis-quali_compare-1.png |binary f1dataR-1.6.0/f1dataR/vignettes/ergast-data-analysis-remade_rounds_points-1.png |only f1dataR-1.6.0/f1dataR/vignettes/ergast-data-analysis.Rmd | 148 +++++- f1dataR-1.6.0/f1dataR/vignettes/introduction-pitstop-1.png |binary f1dataR-1.6.0/f1dataR/vignettes/introduction-use_builtin-1.png |binary f1dataR-1.6.0/f1dataR/vignettes/introduction.Rmd | 65 +-- f1dataR-1.6.0/f1dataR/vignettes/plotting-turn-info-basic_track_plot-1.png |binary f1dataR-1.6.0/f1dataR/vignettes/plotting-turn-info-relabelled_gear_plot-1.png |binary f1dataR-1.6.0/f1dataR/vignettes/plotting-turn-info-telem_plot-1.png |binary f1dataR-1.6.0/f1dataR/vignettes/plotting-turn-info-telem_with_corners-1.png |binary f1dataR-1.6.0/f1dataR/vignettes/plotting-turn-info.Rmd | 50 +- f1dataR-1.6.0/f1dataR/vignettes/plotting-turn-info.Rmd.orig | 32 - f1dataR-1.6.0/f1dataR/vignettes/precompile.R | 4 f1dataR-1.6.0/f1dataR/vignettes/setup_fastf1.Rmd | 3 65 files changed, 1072 insertions(+), 710 deletions(-)
Title: Quantitative Fatty Acid Signature Analysis
Description: Accurate estimates of the diets of predators are required
in many areas of ecology, but for many species current methods are
imprecise, limited to the last meal, and often biased. The diversity
of fatty acids and their patterns in organisms, coupled with the
narrow limitations on their biosynthesis, properties of digestion in
monogastric animals, and the prevalence of large storage reservoirs of
lipid in many predators, led to the development of quantitative
fatty acid signature analysis (QFASA) to study predator diets.
Author: Connie Stewart [cre, aut, cph],
Sara Iverson [aut, cph],
Chris Field [aut],
Don Bowen [aut],
Wade Blanchard [aut],
Shelley Lang [aut],
Justin Kamerman [aut],
Hongchang Bao [ctb],
Holly Steeves [aut],
Jennifer McNichol [aut],
Tyler Rideout [aut]
Maintainer: Connie Stewart <connie.stewart@unb.ca>
Diff between QFASA versions 1.2.0 dated 2023-11-16 and 1.2.1 dated 2024-08-27
DESCRIPTION | 10 +-- MD5 | 38 ++++++------ NAMESPACE | 1 NEWS.md | 14 ++++ R/All_CI_Code.R | 4 - R/All_MUFASA_Code.R | 4 - R/All_Selection_Algorithm_Code.R | 4 - R/All_Simplified_MUFASA_Code.R | 10 ++- R/All_SimultaneousEst_MUFASA_Code.R | 44 ++++++++++---- R/qfasa.R | 8 +- build/vignette.rds |binary inst/doc/MUFASA_Workflow_Example.html | 6 - inst/doc/Parallel_Execution_for_Confidence_Intervals.html | 8 +- inst/doc/QFASA_Workflow_Example.html | 6 - inst/doc/SMUFASA_Workflow_Example.html | 6 - man/conf.meth.Rd | 4 - man/multiplicativeReplacement.Rd | 10 ++- man/p.SMUFASA.Rd | 6 - man/testfordiff.ind.pval.Rd | 3 src/CommonDiet.cpp | 3 20 files changed, 123 insertions(+), 66 deletions(-)
Title: Multivariate Comparative Tools for Fitting Evolutionary Models
to Morphometric Data
Description: Fits multivariate (Brownian Motion, Early Burst, ACDC, Ornstein-Uhlenbeck and Shifts) models of continuous traits evolution on trees and time series. 'mvMORPH' also proposes high-dimensional multivariate comparative tools (linear models using Generalized Least Squares and multivariate tests) based on penalized likelihood. See
Clavel et al. (2015) <DOI:10.1111/2041-210X.12420>, Clavel et al. (2019) <DOI:10.1093/sysbio/syy045>, and Clavel & Morlon (2020) <DOI:10.1093/sysbio/syaa010>.
Author: Julien Clavel [aut, cre],
with contributions from Aaron King [aut],
Emmanuel Paradis [aut]
Maintainer: Julien Clavel <julien.clavel@hotmail.fr>
Diff between mvMORPH versions 1.1.9 dated 2023-12-09 and 1.2.0 dated 2024-08-27
DESCRIPTION | 22 ++++++++++-- MD5 | 60 +++++++++++++++++------------------ NAMESPACE | 3 + NEWS.md | 6 ++- R/classes_methods.r | 28 +++++++++++++++- R/multivariate.stat.r | 2 - R/mvgls.r | 4 +- R/penalized.r | 11 ++++-- R/plot_methods.r | 2 - R/zzz.r | 2 - README.md | 6 +-- build/vignette.rds |binary inst/doc/How_to_use_mvMORPH.R | 48 ++++++++++++++-------------- inst/doc/How_to_use_mvMORPH.pdf |binary inst/doc/tutorial_mvMORPH.R | 22 ++++++------ inst/doc/tutorial_mvMORPH.pdf |binary man/mvBM.Rd | 10 ++--- man/mvMORPH-package.Rd | 2 - man/mvOU.Rd | 6 +-- man/mvSHIFT.Rd | 6 +-- src/chol_rpf_row.c | 16 ++++----- src/chol_rpf_univ.c | 14 ++++---- src/covar-matrix-simmap.c | 48 ++++++++++++++-------------- src/covar.h | 1 src/mvmorph-covar-mat.c | 68 ++++++++++++++++++++-------------------- src/mvmorph-covar-ou-sparse.c | 68 ++++++++++++++++++++-------------------- src/mvmorph.h | 12 +++++-- src/pic_loglik_mvmorph.c | 4 +- src/quadprod.c | 2 - src/time_serie_expectation.c | 40 +++++++++++------------ src/weight-matrix-mvmorph.c | 24 +++++++------- 31 files changed, 294 insertions(+), 243 deletions(-)
Title: Textual Statistics for the Quantitative Analysis of Textual Data
Description: Textual statistics functions formerly in the 'quanteda' package.
Textual statistics for characterizing and comparing textual data. Includes
functions for measuring term and document frequency, the co-occurrence of
words, similarity and distance between features and documents, feature entropy,
keyword occurrence, readability, and lexical diversity. These functions
extend the 'quanteda' package and are specially designed for sparse textual data.
Author: Kenneth Benoit [cre, aut, cph]
,
Kohei Watanabe [aut] ,
Haiyan Wang [aut] ,
Jiong Wei Lua [aut],
Jouni Kuha [aut] ,
European Research Council [fnd]
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>
Diff between quanteda.textstats versions 0.97 dated 2024-04-08 and 0.97.1 dated 2024-08-27
DESCRIPTION | 8 ++--- MD5 | 53 +++++++++++++++++------------------ R/nsyllable-methods.R | 2 - R/textstat_collocations.R | 23 +++++++-------- R/textstat_frequency.R | 12 +++---- R/textstat_keyness.R | 5 +-- R/textstat_lexdiv.R | 16 +++++----- R/textstat_readability.R | 6 ++- R/textstat_simil.R | 19 ++++++------ R/textstat_summary.R | 22 +++++++------- R/utils.R | 46 +++++++++++++++++++++++++++++- README.md | 2 - build/partial.rdb |binary inst/WORDLIST | 1 man/compute_lexdiv_stats.Rd | 6 +-- man/compute_mattr.Rd | 2 - man/compute_msttr.Rd | 2 - man/dfm_split_hyphenated_features.Rd | 2 - man/get_docvars.Rd |only man/nsyllable.tokens.Rd | 2 - man/textstat_collocations.Rd | 21 +++++++------ man/textstat_frequency.Rd | 12 +++---- man/textstat_keyness.Rd | 5 +-- man/textstat_lexdiv.Rd | 4 +- man/textstat_proxy.Rd | 4 +- man/textstat_readability.Rd | 6 ++- man/textstat_simil.Rd | 15 +++++---- man/textstat_summary.Rd | 6 +-- 28 files changed, 178 insertions(+), 124 deletions(-)
More information about quanteda.textstats at CRAN
Permanent link
Title: Principal Component BiSulfite
Description: A system for fast, accurate, and flexible whole genome bisulfite sequencing (WGBS) data analysis of two-condition comparisons. Principal Component BiSulfite, 'PCBS', assigns methylated loci eigenvector values from the treatment-delineating principal component in lieu of running millions of pairwise statistical tests, which dramatically increases analysis flexibility and reduces computational requirements. Methods: <https://katlande.github.io/PCBS/articles/Differential_Methylation.html>.
Author: Kathryn Lande [aut, cre, cph]
Maintainer: Kathryn Lande <kathryn.lande@mail.mcgill.ca>
Diff between PCBS versions 0.1.0 dated 2024-04-23 and 0.1.1 dated 2024-08-27
DESCRIPTION | 10 ++--- MD5 | 20 +++++++--- R/Get_Novel_DMRs.R | 3 + R/MethyDiff_Set.R |only R/MethylDiff.R |only R/chromDictMeth.R |only R/getRegionScores.R | 90 +++++++++++++++++++++++++-------------------- R/get_all_DMRs.R | 22 ++++++----- R/methylDiff_metagene.R |only R/score_metagene.R | 3 + man/MethyDiff_Set.Rd |only man/MethylDiff.Rd |only man/chromDictMeth.Rd |only man/getRegionScores.Rd | 7 ++- man/methylDiff_metagene.Rd |only 15 files changed, 89 insertions(+), 66 deletions(-)
Title: Game of 'tetRys'
Description: A game inspired by 'Tetris'. Opens a plot window device and starts a game of 'tetRys' in it. Steer the tetrominos with the arrow keys, press Pause to pause and Esc to end the game.
Author: Carsten Croonenbroeck [aut, cre]
Maintainer: Carsten Croonenbroeck <carsten.croonenbroeck@uni-rostock.de>
Diff between tetRys versions 1.1 dated 2024-07-26 and 1.2 dated 2024-08-27
tetRys-1.1/tetRys/data |only tetRys-1.1/tetRys/man/Wave.Rd |only tetRys-1.2/tetRys/DESCRIPTION | 11 +-- tetRys-1.2/tetRys/MD5 | 19 +++-- tetRys-1.2/tetRys/NAMESPACE | 2 tetRys-1.2/tetRys/NEWS | 10 +++ tetRys-1.2/tetRys/R/tetRys.R | 128 ++++++++++++++++++++++++++++++++++------ tetRys-1.2/tetRys/R/zzz.R | 4 + tetRys-1.2/tetRys/inst |only tetRys-1.2/tetRys/man/tetRys.Rd | 5 + 10 files changed, 144 insertions(+), 35 deletions(-)
Title: Individual Dose Optimization using Population Pharmacokinetics
Description: Personalize drug regimens using individual pharmacokinetic and
pharmacokinetic-pharmacodynamic profiles. Using combining therapeutic drug
monitoring (TDM) data and a population model, 'posologyr' provides accurate
a posteriori estimates and allows you to compute the optimal individualized
dosing regimen. The empirical Bayes estimates are computed as described in
Kang et al. (2012) <doi:10.4196/kjpp.2012.16.2.97>.
Author: Cyril Leven [aut, cre, cph] ,
Matthew Fidler [ctb] ,
Emmanuelle Comets [ctb],
Audrey Lavenu [ctb],
Marc Lavielle [ctb]
Maintainer: Cyril Leven <cyril.leven@chu-brest.fr>
Diff between posologyr versions 1.2.4 dated 2024-02-09 and 1.2.6 dated 2024-08-27
posologyr-1.2.4/posologyr/R/residual_error.R |only posologyr-1.2.4/posologyr/inst/doc/patient_data_input.R |only posologyr-1.2.4/posologyr/inst/doc/patient_data_input.Rmd |only posologyr-1.2.4/posologyr/inst/doc/patient_data_input.html |only posologyr-1.2.4/posologyr/inst/doc/posologyr_user_defined_models.R |only posologyr-1.2.4/posologyr/inst/doc/posologyr_user_defined_models.Rmd |only posologyr-1.2.4/posologyr/inst/doc/posologyr_user_defined_models.html |only posologyr-1.2.4/posologyr/man/error_model_comb1.Rd |only posologyr-1.2.4/posologyr/man/error_model_comb2.Rd |only posologyr-1.2.4/posologyr/man/error_model_mixednm.Rd |only posologyr-1.2.4/posologyr/man/figures/README-map_plot_dv-1.png |only posologyr-1.2.4/posologyr/vignettes/patient_data_input.Rmd |only posologyr-1.2.4/posologyr/vignettes/posologyr_user_defined_models.Rmd |only posologyr-1.2.6/posologyr/DESCRIPTION | 24 posologyr-1.2.6/posologyr/MD5 | 112 +-- posologyr-1.2.6/posologyr/NAMESPACE | 3 posologyr-1.2.6/posologyr/NEWS.md | 22 posologyr-1.2.6/posologyr/R/dosing_optim.R | 322 ++++------ posologyr-1.2.6/posologyr/R/input_validation.R | 2 posologyr-1.2.6/posologyr/R/iov.R | 2 posologyr-1.2.6/posologyr/R/ofv.R | 2 posologyr-1.2.6/posologyr/R/param_estim.R | 283 ++++---- posologyr-1.2.6/posologyr/R/posologyr.R | 2 posologyr-1.2.6/posologyr/R/utils.R | 11 posologyr-1.2.6/posologyr/README.md | 282 ++++---- posologyr-1.2.6/posologyr/build/vignette.rds |binary posologyr-1.2.6/posologyr/inst/doc/a_posteriori_dosing.R | 64 + posologyr-1.2.6/posologyr/inst/doc/a_posteriori_dosing.Rmd | 66 +- posologyr-1.2.6/posologyr/inst/doc/a_posteriori_dosing.html | 90 +- posologyr-1.2.6/posologyr/inst/doc/a_priori_dosing.R | 65 +- posologyr-1.2.6/posologyr/inst/doc/a_priori_dosing.Rmd | 71 +- posologyr-1.2.6/posologyr/inst/doc/a_priori_dosing.html | 87 +- posologyr-1.2.6/posologyr/inst/doc/auc_based_dosing.R | 62 - posologyr-1.2.6/posologyr/inst/doc/auc_based_dosing.Rmd | 66 +- posologyr-1.2.6/posologyr/inst/doc/auc_based_dosing.html | 90 +- posologyr-1.2.6/posologyr/inst/doc/classic_posologyr_models.R |only posologyr-1.2.6/posologyr/inst/doc/classic_posologyr_models.Rmd |only posologyr-1.2.6/posologyr/inst/doc/classic_posologyr_models.html |only posologyr-1.2.6/posologyr/inst/doc/multiple_endpoints.R | 116 +-- posologyr-1.2.6/posologyr/inst/doc/multiple_endpoints.Rmd | 128 +-- posologyr-1.2.6/posologyr/inst/doc/multiple_endpoints.html | 229 +++---- posologyr-1.2.6/posologyr/inst/doc/patient_data.R |only posologyr-1.2.6/posologyr/inst/doc/patient_data.Rmd |only posologyr-1.2.6/posologyr/inst/doc/patient_data.html |only posologyr-1.2.6/posologyr/inst/doc/population_models.R |only posologyr-1.2.6/posologyr/inst/doc/population_models.Rmd |only posologyr-1.2.6/posologyr/inst/doc/population_models.html |only posologyr-1.2.6/posologyr/inst/doc/route_of_administration.R |only posologyr-1.2.6/posologyr/inst/doc/route_of_administration.Rmd |only posologyr-1.2.6/posologyr/inst/doc/route_of_administration.html |only posologyr-1.2.6/posologyr/man/figures/README-map_plot-1.png |binary posologyr-1.2.6/posologyr/man/poso_dose_auc.Rd | 73 +- posologyr-1.2.6/posologyr/man/poso_dose_conc.Rd | 72 +- posologyr-1.2.6/posologyr/man/poso_estim_map.Rd | 52 - posologyr-1.2.6/posologyr/man/poso_estim_mcmc.Rd | 52 - posologyr-1.2.6/posologyr/man/poso_estim_sir.Rd | 52 - posologyr-1.2.6/posologyr/man/poso_inter_cmin.Rd | 74 +- posologyr-1.2.6/posologyr/man/poso_simu_pop.Rd | 55 - posologyr-1.2.6/posologyr/man/poso_time_cmin.Rd | 69 +- posologyr-1.2.6/posologyr/tests/testthat/test_classoutput.R | 4 posologyr-1.2.6/posologyr/tests/testthat/test_doseoptim_cmt.R |only posologyr-1.2.6/posologyr/tests/testthat/test_issue_30.R | 18 posologyr-1.2.6/posologyr/tests/testthat/test_issue_52.R |only posologyr-1.2.6/posologyr/tests/testthat/test_issue_53.R |only posologyr-1.2.6/posologyr/tests/testthat/test_rxui.R | 12 posologyr-1.2.6/posologyr/vignettes/a_posteriori_dosing.Rmd | 66 +- posologyr-1.2.6/posologyr/vignettes/a_priori_dosing.Rmd | 71 +- posologyr-1.2.6/posologyr/vignettes/auc_based_dosing.Rmd | 66 +- posologyr-1.2.6/posologyr/vignettes/classic_posologyr_models.Rmd |only posologyr-1.2.6/posologyr/vignettes/multiple_endpoints.Rmd | 128 +-- posologyr-1.2.6/posologyr/vignettes/patient_data.Rmd |only posologyr-1.2.6/posologyr/vignettes/population_models.Rmd |only posologyr-1.2.6/posologyr/vignettes/route_of_administration.Rmd |only 73 files changed, 1551 insertions(+), 1514 deletions(-)
Title: Method Comparison Regression - Mcr Fork for M- And MM-Deming
Regression
Description: Regression methods to quantify the relation between two measurement
methods are provided by this package. In particular it addresses regression
problems with errors in both variables and without repeated measurements. It
implements the Clinical Laboratory Standard International (CLSI)
recommendations (see J. A. Budd et al.
(2018, <https://clsi.org/standards/products/method-evaluation/documents/ep09/>)
for analytical method comparison and bias estimation using patient samples.
Furthermore, algorithms for Theil-Sen and equivariant Passing-Bablok estimators
are implemented, see F. Dufey (2020, <doi:10.1515/ijb-2019-0157>) and
J. Raymaekers and F. Dufey (2022, <arXiv:2202:08060>).
Further the robust M-Deming and MM-Deming (experimental) are available, see
G. Pioda (2021, <arXiv:2105:04628>).
A comprehensive overview over the implemented methods and references can be found
in the manual pages 'mcrPioda-package' and 'mcreg'.
Author: Giorgio Pioda [aut, cre] ,
Sergej Potapov [aut] ,
Fabian Model [aut],
Andre Schuetzenmeister [aut] ,
Ekaterina Manuilova [aut],
Florian Dufey [aut] ,
Jakob Raymaekers [aut] ,
Venkatraman E. Seshan [ctb],
Roche [cph, fnd]
Maintainer: Giorgio Pioda <gfwp@ticino.com>
Diff between mcrPioda versions 1.3.3 dated 2024-06-04 and 1.3.4 dated 2024-08-27
DESCRIPTION | 10 - MD5 | 19 +- NAMESPACE | 1 NEWS.md | 11 + R/MCResult.r | 257 +++++++++++++++++++------------------- R/MCResultMethods.r | 31 ++++ R/mcrInterface.r | 11 + man/MCResult-class.Rd | 148 +++++++++++---------- man/MCResult.calcPaBaTiesRatio.Rd |only src/PaBaAlgorithm.c | 16 +- src/calcRegression.c | 18 ++ 11 files changed, 295 insertions(+), 227 deletions(-)
Title: Toolbox for Model Building and Forecasting
Description: Implements functions and instruments for regression model building and its
application to forecasting. The main scope of the package is in variables selection
and models specification for cases of time series data. This includes promotional
modelling, selection between different dynamic regressions with non-standard
distributions of errors, selection based on cross validation, solutions to the fat
regression model problem and more. Models developed in the package are tailored
specifically for forecasting purposes. So as a results there are several methods
that allow producing forecasts from these models and visualising them.
Author: Ivan Svetunkov [aut, cre] ,
Yves R. Sagaert [ctb]
Maintainer: Ivan Svetunkov <ivan@svetunkov.com>
Diff between greybox versions 2.0.1 dated 2024-06-19 and 2.0.2 dated 2024-08-27
greybox-2.0.1/greybox/R/timeboot.R |only greybox-2.0.1/greybox/man/adi.Rd |only greybox-2.0.1/greybox/man/timeboot.Rd |only greybox-2.0.2/greybox/DESCRIPTION | 8 greybox-2.0.2/greybox/MD5 | 48 +- greybox-2.0.2/greybox/NAMESPACE | 15 greybox-2.0.2/greybox/NEWS | 27 + greybox-2.0.2/greybox/R/AutomaticDemandIdentifier.R | 349 ++++++++++++-------- greybox-2.0.2/greybox/R/alm.R | 72 +++- greybox-2.0.2/greybox/R/coefbootstrap.R | 173 +++++++-- greybox-2.0.2/greybox/R/dsrboot.R |only greybox-2.0.2/greybox/R/greybox-package.R | 2 greybox-2.0.2/greybox/R/methods.R | 141 ++++++-- greybox-2.0.2/greybox/R/outlierdummy.R | 1 greybox-2.0.2/greybox/R/pointLik.R | 94 ++--- greybox-2.0.2/greybox/README.md | 1 greybox-2.0.2/greybox/inst/doc/alm.R | 38 +- greybox-2.0.2/greybox/inst/doc/alm.Rmd | 77 +++- greybox-2.0.2/greybox/inst/doc/alm.html | 148 +++++--- greybox-2.0.2/greybox/inst/doc/greybox.html | 4 greybox-2.0.2/greybox/inst/doc/maUsingGreybox.html | 4 greybox-2.0.2/greybox/inst/doc/ro.html | 16 greybox-2.0.2/greybox/man/aid.Rd |only greybox-2.0.2/greybox/man/alm.Rd | 11 greybox-2.0.2/greybox/man/coefbootstrap.Rd | 26 + greybox-2.0.2/greybox/man/dsrboot.Rd |only greybox-2.0.2/greybox/man/greybox.Rd | 2 greybox-2.0.2/greybox/vignettes/alm.Rmd | 77 +++- 28 files changed, 937 insertions(+), 397 deletions(-)
Title: Statistical Process Control -- Calculation of ARL and Other
Control Chart Performance Measures
Description: Evaluation of control charts by means of
the zero-state, steady-state ARL (Average Run Length) and RL quantiles.
Setting up control charts for given in-control ARL. The control charts
under consideration are one- and two-sided EWMA, CUSUM, and
Shiryaev-Roberts schemes for monitoring the mean or variance of normally
distributed independent data. ARL calculation of the same set of schemes under drift (in the mean) are added.
Eventually, all ARL measures for the multivariate EWMA (MEWMA) are provided.
Author: Sven Knoth [aut, cre]
Maintainer: Sven Knoth <Sven.Knoth@gmx.de>
Diff between spc versions 0.6.8 dated 2024-04-24 and 0.7.1 dated 2024-08-27
DESCRIPTION | 16 MD5 | 16 man/mewma.arl.Rd | 6 src/allspc.c | 2763 ++++++++++++++++++++--------------------- src/mewma_arl_f.c | 16 src/mewma_psi.c | 6 src/quadrature_nodes_weights.c | 4 src/sewma_sf.c | 2 src/xewma_arl_f.c | 6 9 files changed, 1421 insertions(+), 1414 deletions(-)
Title: Evaluation of the Proportional Hazards Assumption and Test for
Comparing Survival Curves with a Standardized Score Process
Description: Provides tools for the test for the comparison of survival curves, the evaluation of the goodness-of-fit and the predictive capacity of the proportional hazards model.
Author: Cecile Chauvel [aut, cre]
Maintainer: Cecile Chauvel <cecile.chauvel@univ-lyon1.fr>
Diff between PHeval versions 0.5.4 dated 2018-09-13 and 1.0 dated 2024-08-27
DESCRIPTION | 28 +- MD5 | 15 - NAMESPACE | 6 R/PHeval.R | 638 +++++++++++++++++++++++++++----------------------- man/PHeval-package.Rd | 77 +++--- man/R2.Rd | 99 +++---- man/plotscore.Rd | 119 ++++----- man/standscore.Rd | 171 ++++++------- man/testscore.Rd |only 9 files changed, 606 insertions(+), 547 deletions(-)
Title: A Vector Spatio-Temporal Data Structure for Data Analysis
Description: A spatiotemperal data object in a relational data structure to separate the recording of time variant/ invariant variables. See the Journal of Statistical Software reference: <doi:10.18637/jss.v110.i07>.
Author: H. Sherry Zhang [aut, cre] ,
Dianne Cook [aut] ,
Ursula Laa [aut] ,
Nicolas Langrene [aut] ,
Patricia Menendez [aut]
Maintainer: H. Sherry Zhang <huizezhangsh@gmail.com>
Diff between cubble versions 0.3.2 dated 2024-07-18 and 1.0.0 dated 2024-08-27
DESCRIPTION | 8 +- MD5 | 74 +++++++++--------- NAMESPACE | 2 NEWS.md | 5 + R/cubble-package.R | 1 R/dplyr.R | 20 ++++- R/face-spatial-temporal.R | 1 R/sf.R | 6 - R/tsibble.R | 20 ++++- R/zzz.R | 10 -- build/partial.rdb |only build/vignette.rds |binary inst/CITATION |only inst/doc/cb1class.Rmd | 2 inst/doc/cb1class.html | 166 +++++++++++++++++++++--------------------- inst/doc/cb2create.Rmd | 2 inst/doc/cb2create.html | 140 +++++++++++++++++------------------ inst/doc/cb3tsibblesf.Rmd | 2 inst/doc/cb3tsibblesf.html | 121 +++++++++++++++--------------- inst/doc/cb4glyph.Rmd | 2 inst/doc/cb4glyph.html | 11 +- inst/doc/cb5match.Rmd | 2 inst/doc/cb5match.html | 144 ++++++++++++++++++------------------ inst/doc/cb6interactive.Rmd | 2 inst/doc/cb6interactive.html | 14 +-- inst/doc/cb7misc.Rmd | 2 inst/doc/cb7misc.html | 4 - man/accessors.Rd | 2 man/cubble-package.Rd | 2 man/face.Rd | 3 man/tsibble.Rd | 3 tests/testthat/test-tsibble.R | 10 ++ vignettes/cb1class.Rmd | 2 vignettes/cb2create.Rmd | 2 vignettes/cb3tsibblesf.Rmd | 2 vignettes/cb4glyph.Rmd | 2 vignettes/cb5match.Rmd | 2 vignettes/cb6interactive.Rmd | 2 vignettes/cb7misc.Rmd | 2 39 files changed, 424 insertions(+), 371 deletions(-)
Title: Tree-Based Scan Statistics
Description: Implementation of unconditional Bernoulli Scan Statistic developed
by Kulldorff et al. (2003) <doi:10.1111/1541-0420.00039>
for hierarchical tree structures. Tree-based Scan Statistics are an
exploratory method to identify event clusters across the space of a
hierarchical tree.
Author: Joshua P. Entrop [aut, cre, cph]
,
Viktor Wintzell [aut]
Maintainer: Joshua P. Entrop <joshuaentrop@posteo.de>
Diff between TreeMineR versions 1.0.1 dated 2024-04-02 and 1.0.2 dated 2024-08-27
DESCRIPTION | 10 ++- MD5 | 24 ++++---- NEWS.md | 4 + R/TreeMineR.R | 32 +++++++++- R/drop_cuts.R | 3 - data/atc_codes.rda |binary man/TreeMineR.Rd | 19 ++++++ man/atc_codes.Rd | 34 +++++------ man/drop_cuts.Rd | 111 ++++++++++++++++++------------------- man/icd_10_se.Rd | 34 +++++------ man/icd_10_se_dict.Rd | 34 +++++------ tests/testthat/_snaps/TreeMineR.md | 19 ++++++ tests/testthat/test-TreeMineR.R | 17 +++++ 13 files changed, 214 insertions(+), 127 deletions(-)
Title: MR Spectroscopy Analysis Tools
Description: Tools for reading, visualising and processing Magnetic Resonance
Spectroscopy data. The package includes methods for spectral fitting: Wilson
(2021) <DOI:10.1002/mrm.28385> and spectral alignment: Wilson (2018)
<DOI:10.1002/mrm.27605>.
Author: Martin Wilson [cre, aut] ,
Yong Wang [ctb],
John Muschelli [ctb]
Maintainer: Martin Wilson <martin@pipegrep.co.uk>
Diff between spant versions 2.22.0 dated 2024-07-11 and 2.23.0 dated 2024-08-27
DESCRIPTION | 12 - MD5 | 40 ++-- NAMESPACE | 2 NEWS.md | 6 R/abfit.R | 275 ++++++++++++++++++++++-------- R/basis_set.R | 97 ++++++++++ R/fitting.R | 51 ++++- R/mrs_read_rda.R | 3 build/vignette.rds |binary inst/doc/abfit-baseline-opts.html | 12 - inst/doc/spant-intro.html | 208 +++++++++++----------- inst/doc/spant-metabolite-simulation.html | 4 inst/doc/spant-preprocessing.html | 4 man/abfit_opts.Rd | 35 ++- man/basis2mrs_data.Rd | 11 + man/calc_basis_corr_mat.Rd |only man/calc_basis_crlbs.Rd |only man/fit_mrs.Rd | 4 tests/testthat/abfit_res_coarse.rds |binary tests/testthat/abfit_res_default.rds |binary tests/testthat/abfit_res_fine.rds |binary tests/testthat/abfit_res_no_optim.rds |binary 22 files changed, 531 insertions(+), 233 deletions(-)
Title: R Graphics Devices for 'Office' Vector Graphics Output
Description: Vector Graphics devices for 'Microsoft PowerPoint' and
'Microsoft Excel'. Functions extending package 'officer' are provided to
embed 'DrawingML' graphics into 'Microsoft PowerPoint' presentations and
'Microsoft Excel' workbooks.
Author: David Gohel [aut, cre],
ArData [cph],
Bob Rudis [ctb] ,
Francois Brunetti [ctb]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between rvg versions 0.3.3 dated 2023-05-10 and 0.3.4 dated 2024-08-27
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 6 ++++++ R/fonts.R | 5 ++--- R/ph_with_vg.R | 5 +++++ 5 files changed, 21 insertions(+), 11 deletions(-)
Title: An R Package for Multiple-Group Latent Class Analysis
Description: Fits multiple-group latent class analysis (LCA) for exploring
differences between populations in the data with a multilevel structure.
There are two approaches to reflect group differences in glca:
fixed-effect LCA (Bandeen-Roche et al (1997) <doi:10.1080/01621459.1997.10473658>;
Clogg and Goodman (1985) <doi:10.2307/270847>) and nonparametric random-effect LCA
(Vermunt (2003) <doi:10.1111/j.0081-1750.2003.t01-1-00131.x>).
Author: Youngsun Kim [aut, cre],
Hwan Chung [aut]
Maintainer: Youngsun Kim <yskstat@gmail.com>
Diff between glca versions 1.4.0 dated 2023-04-26 and 1.4.2 dated 2024-08-27
DESCRIPTION | 9 MD5 | 46 +- R/coef.glca.R | 86 +++ R/dataset.r | 2 R/glca_output.R | 95 ---- R/gofglca.R | 10 R/package.R | 1 R/print.glca.R | 4 R/reorder.glca.R | 2 R/summary.glca.R | 28 - build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 24 + inst/doc/glca.Rmd | 2 inst/doc/glca.html | 892 +++++++++++++++++++-------------------- inst/doc/model-description.html | 14 man/figures/README-example-1.png |only man/figures/README-example-2.png |only man/figures/README-example-3.png |only man/figures/README-example-4.png |only man/figures/README-example-5.png |only man/figures/README-example-6.png |only man/glca-package.Rd | 1 man/gofglca.Rd | 4 man/nyts18.Rd | 2 man/reorder.glca.Rd | 6 vignettes/glca.Rmd | 2 27 files changed, 625 insertions(+), 605 deletions(-)
Title: Compositional Data Analysis in Practice
Description: Univariate and multivariate methods for compositional data
analysis, based on logratios. The package implements the approach in the
book Compositional Data Analysis in Practice by Michael Greenacre (2018),
where accent is given to simple pairwise logratios. Selection can be made
of logratios that account for a maximum percentage of logratio variance.
Various multivariate analyses of logratios are included in the package.
Author: Michael Greenacre [aut, cre]
Maintainer: Michael Greenacre <michael.greenacre@upf.edu>
Diff between easyCODA versions 0.34.3 dated 2020-09-19 and 0.40.2 dated 2024-08-27
DESCRIPTION | 23 +- MD5 | 46 ++--- NAMESPACE | 9 - R/CA.r | 11 - R/CIplot_biv.r | 407 +++++++++++++++++++++++++----------------------- R/FINDALR.r |only R/PCA.r | 8 R/PLR.r | 22 +- R/STEPR.r |only build/partial.rdb |binary data/cups.RData |binary data/fish.RData |binary data/time.RData |binary data/veg.rda |binary inst/CITATION | 16 + man/CA.Rd | 9 - man/CIplot_biv.Rd | 5 man/FINDALR.Rd |only man/LRA.Rd | 36 ---- man/PCA.Rd | 10 - man/PLOT.CA.Rd | 12 - man/PLOT.LRA.Rd | 12 - man/PLOT.PCA.Rd | 10 - man/RDA.Rd | 8 man/STEPR.Rd |only man/easyCODA-package.Rd | 19 -- 26 files changed, 341 insertions(+), 322 deletions(-)
Title: Create Ternary and Holdridge Plots
Description: Plots ternary diagrams (simplex plots / Gibbs triangles) and
Holdridge life zone plots <doi:10.1126/science.105.2727.367> using the
standard graphics functions.
Allows custom annotation, interpolating, contouring and scaling of plotting
region.
Includes a 'Shiny' user interface for point-and-click ternary plotting.
An alternative to 'ggtern', which uses the 'ggplot2' family of plotting
functions.
Author: Martin R. Smith [aut, cre, cph]
,
Lilian Sanselme [ctb]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between Ternary versions 2.3.2 dated 2024-07-25 and 2.3.3 dated 2024-08-27
DESCRIPTION | 10 MD5 | 68 NAMESPACE | 164 NEWS.md | 5 R/Contours.R | 1795 R/Coordinates.R | 714 inst/TernaryApp/app.R | 1208 inst/doc/Holdridge.R | 8 inst/doc/Holdridge.Rmd | 309 inst/doc/Holdridge.html | 4 inst/doc/Ternary.R | 8 inst/doc/Ternary.Rmd | 55 inst/doc/Ternary.html | 66 inst/doc/annotation.html | 4 inst/doc/interpolation.R | 8 inst/doc/interpolation.Rmd | 359 inst/doc/interpolation.html | 10 inst/doc/new-users.R | 12 inst/doc/new-users.Rmd | 523 inst/doc/new-users.html | 4 man/ColourTernary.Rd | 208 man/TernaryContour.Rd | 274 man/TernaryDensityContour.Rd | 254 tests/testthat/_snaps/Contours/contours-skiwiff.svg | 5442 - tests/testthat/_snaps/Contours/contours.svg | 5644 - tests/testthat/_snaps/Contours/density-contours.svg | 3844 - tests/testthat/_snaps/Contours/filledcontours.svg |48210 ++++++------- tests/testthat/_snaps/Contours/lo-res-density-contours.svg | 1352 tests/testthat/_snaps/Holdridge/holdridge-basic.svg | 594 tests/testthat/test-Coordinates.R | 306 tests/testthat/test-Holdridge.R | 56 vignettes/Holdridge.Rmd | 309 vignettes/Ternary.Rmd | 55 vignettes/interpolation.Rmd | 359 vignettes/new-users.Rmd | 523 35 files changed, 36274 insertions(+), 36490 deletions(-)
Title: Shape-Constrained Kernel Density Estimation
Description: Implements methods for obtaining kernel density estimates
subject to a variety of shape constraints (unimodality, bimodality,
symmetry, tail monotonicity, bounds, and constraints on the number of
inflection points). Enforcing constraints can eliminate unwanted waves or
kinks in the estimate, which improves its subjective appearance and can
also improve statistical performance. The main function scdensity() is
very similar to the density() function in 'stats', allowing
shape-restricted estimates to be obtained with little effort. The
methods implemented in this package are described in Wolters and Braun
(2017) <doi:10.1080/03610918.2017.1288247>, Wolters (2012)
<doi:10.18637/jss.v047.i06>, and Hall and Huang (2002)
<https://www3.stat.sinica.edu.tw/statistica/j12n4/j12n41/j12n41.htm>.
See the scdensity() help for for full citations.
Author: Mark A. Wolters [aut, cre]
Maintainer: Mark A. Wolters <mark@mwolters.com>
Diff between scdensity versions 1.0.2 dated 2018-01-30 and 1.0.3 dated 2024-08-27
DESCRIPTION | 11 +- MD5 | 26 +++--- R/helper_functions.R | 6 - R/scdensity-package.R | 10 +- R/scdensity.R | 190 ++++++++++++++++++++++------------------------- R/sharpenedKDE.R | 10 +- R/weightedKDE.R | 4 man/InitializeP.Rd | 2 man/QPsolve.Rd | 6 - man/WeightedKDE.Rd | 2 man/improve.Rd | 10 +- man/plot.scdensity.Rd | 23 +++-- man/scdensity-package.Rd | 9 +- man/scdensity.Rd | 132 ++++++++++++++++---------------- 14 files changed, 228 insertions(+), 213 deletions(-)
Title: Calculates Earned Value for a Project Schedule
Description: Given a project schedule and associated costs, this package calculates the earned value to date. It is an implementation of Project Management Body of Knowledge (PMBOK) methodologies (reference Project Management Institute. (2021). A guide to the Project Management Body of Knowledge (PMBOK guide) (7th ed.). Project Management Institute, Newtown Square, PA, ISBN 9781628256673 (pdf)).
Author: David Hammond [aut, cre]
Maintainer: David Hammond <anotherdavidhammond@gmail.com>
Diff between pmev versions 0.0.2 dated 2024-07-04 and 0.1.2 dated 2024-08-27
pmev-0.0.2/pmev/R/utils-pipe.R |only pmev-0.0.2/pmev/man/pipe.Rd |only pmev-0.1.2/pmev/DESCRIPTION | 12 ++-- pmev-0.1.2/pmev/MD5 | 24 ++++---- pmev-0.1.2/pmev/NAMESPACE | 18 +++++- pmev-0.1.2/pmev/NEWS.md | 4 + pmev-0.1.2/pmev/R/earned_value.R | 12 ++-- pmev-0.1.2/pmev/R/planned_value.R | 14 ++-- pmev-0.1.2/pmev/R/pmev-package.R | 2 pmev-0.1.2/pmev/R/pmevR6.R |only pmev-0.1.2/pmev/README.md | 45 +++++---------- pmev-0.1.2/pmev/man/ev.Rd |only pmev-0.1.2/pmev/man/figures/README-unnamed-chunk-2-1.png |binary pmev-0.1.2/pmev/man/pmev-package.Rd | 2 pmev-0.1.2/pmev/tests/testthat/test-classes.R | 28 +++++++++ 15 files changed, 97 insertions(+), 64 deletions(-)
Title: Orchestration of Data Pipelines
Description: Framework for creating and orchestrating data pipelines. Organize, orchestrate, and monitor multiple pipelines in a single project. Use tags to decorate functions with scheduling parameters and configuration.
Author: Will Hipson [cre, aut, cph] ,
Ryan Garnett [aut, ctb, cph]
Maintainer: Will Hipson <will.e.hipson@gmail.com>
Diff between maestro versions 0.1.2 dated 2024-08-01 and 0.2.0 dated 2024-08-27
maestro-0.1.2/maestro/tests/testthat/test-suggest-orch-frequency.R |only maestro-0.2.0/maestro/DESCRIPTION | 6 maestro-0.2.0/maestro/MD5 | 118 ++-- maestro-0.2.0/maestro/NAMESPACE | 9 maestro-0.2.0/maestro/NEWS.md | 46 + maestro-0.2.0/maestro/R/build_schedule.R | 17 maestro-0.2.0/maestro/R/build_schedule_entry.R | 55 ++ maestro-0.2.0/maestro/R/check_pipelines.R | 71 +- maestro-0.2.0/maestro/R/create_maestro.R | 8 maestro-0.2.0/maestro/R/create_orchestrator.R | 4 maestro-0.2.0/maestro/R/create_pipeline.R | 47 - maestro-0.2.0/maestro/R/latest_getters.R | 19 maestro-0.2.0/maestro/R/maestro.R | 3 maestro-0.2.0/maestro/R/maestro_tags.R | 6 maestro-0.2.0/maestro/R/roxy_maestro.R | 248 +++++++++- maestro-0.2.0/maestro/R/run_schedule.R | 24 maestro-0.2.0/maestro/R/suggest_orch_frequency.R | 119 +++- maestro-0.2.0/maestro/R/utils.R | 82 +++ maestro-0.2.0/maestro/README.md | 5 maestro-0.2.0/maestro/data/example_schedule.rda |binary maestro-0.2.0/maestro/inst/doc/maestro-1-quick-start.Rmd | 6 maestro-0.2.0/maestro/inst/doc/maestro-1-quick-start.html | 8 maestro-0.2.0/maestro/inst/doc/maestro-4-advanced-scheduling.R | 50 ++ maestro-0.2.0/maestro/inst/doc/maestro-4-advanced-scheduling.Rmd | 72 ++ maestro-0.2.0/maestro/inst/doc/maestro-4-advanced-scheduling.html | 81 +++ maestro-0.2.0/maestro/man/build_schedule.Rd | 9 maestro-0.2.0/maestro/man/check_pipelines.Rd | 20 maestro-0.2.0/maestro/man/create_maestro.Rd | 8 maestro-0.2.0/maestro/man/create_pipeline.Rd | 47 - maestro-0.2.0/maestro/man/get_pipeline_run_sequence.Rd |only maestro-0.2.0/maestro/man/last_build_errors.Rd | 4 maestro-0.2.0/maestro/man/last_run_errors.Rd | 5 maestro-0.2.0/maestro/man/last_run_messages.Rd | 5 maestro-0.2.0/maestro/man/last_run_warnings.Rd | 5 maestro-0.2.0/maestro/man/maestro_tags.Rd | 5 maestro-0.2.0/maestro/man/parse_rounding_unit.Rd | 2 maestro-0.2.0/maestro/man/run_schedule.Rd | 12 maestro-0.2.0/maestro/man/suggest_orch_frequency.Rd | 24 maestro-0.2.0/maestro/tests/testthat/_snaps/build_schedule.md | 29 - maestro-0.2.0/maestro/tests/testthat/_snaps/build_schedule_entry.md | 11 maestro-0.2.0/maestro/tests/testthat/_snaps/run_schedule.md | 75 ++- maestro-0.2.0/maestro/tests/testthat/test-build_schedule.R | 3 maestro-0.2.0/maestro/tests/testthat/test-build_schedule_entry.R | 18 maestro-0.2.0/maestro/tests/testthat/test-create_maestro.R | 18 maestro-0.2.0/maestro/tests/testthat/test-create_orchestrator.R | 17 maestro-0.2.0/maestro/tests/testthat/test-create_pipeline.R | 17 maestro-0.2.0/maestro/tests/testthat/test-roclets.R | 97 +++ maestro-0.2.0/maestro/tests/testthat/test-run_schedule.R | 180 +++++-- maestro-0.2.0/maestro/tests/testthat/test-suggest_orch_frequency.R |only maestro-0.2.0/maestro/tests/testthat/test_pipelines/test_pipeline_daily_single_bad.R |only maestro-0.2.0/maestro/tests/testthat/test_pipelines/test_pipeline_daily_single_good.R |only maestro-0.2.0/maestro/tests/testthat/test_pipelines/test_pipeline_days_bad.R |only maestro-0.2.0/maestro/tests/testthat/test_pipelines/test_pipeline_days_bad2.R |only maestro-0.2.0/maestro/tests/testthat/test_pipelines/test_pipeline_days_good.R |only maestro-0.2.0/maestro/tests/testthat/test_pipelines/test_pipeline_days_good2.R |only maestro-0.2.0/maestro/tests/testthat/test_pipelines/test_pipeline_hours_bad.R |only maestro-0.2.0/maestro/tests/testthat/test_pipelines/test_pipeline_hours_good.R |only maestro-0.2.0/maestro/tests/testthat/test_pipelines/test_pipeline_months_bad.R |only maestro-0.2.0/maestro/tests/testthat/test_pipelines/test_pipeline_months_good.R |only maestro-0.2.0/maestro/tests/testthat/test_pipelines_parse_all_bad/specifiers.R |only maestro-0.2.0/maestro/tests/testthat/test_pipelines_parse_all_good/pipe1.R | 10 maestro-0.2.0/maestro/tests/testthat/test_pipelines_parse_all_good/pipe_with_custom_fun.R | 2 maestro-0.2.0/maestro/tests/testthat/test_pipelines_parse_all_good/specifiers.R |only maestro-0.2.0/maestro/tests/testthat/test_pipelines_run_all_good/pipe1.R | 7 maestro-0.2.0/maestro/tests/testthat/test_pipelines_run_skip/with_skip.R | 2 maestro-0.2.0/maestro/tests/testthat/test_pipelines_run_specifiers |only maestro-0.2.0/maestro/vignettes/maestro-1-quick-start.Rmd | 6 maestro-0.2.0/maestro/vignettes/maestro-4-advanced-scheduling.Rmd | 72 ++ 68 files changed, 1456 insertions(+), 358 deletions(-)
Title: Cross-Quantilogram
Description: Estimation and inference methods for the cross-quantilogram.
The cross-quantilogram is a measure of nonlinear dependence between
two variables, based on either unconditional or conditional quantile
functions. It can be considered an extension of the correlogram,
which is a correlation function over multiple lag periods that mainly
focuses on linear dependency. One can use the cross-quantilogram to
detect the presence of directional predictability from one time series
to another. This package provides a statistical inference method
based on the stationary bootstrap. For detailed theoretical and
empirical explanations, see Linton and Whang (2007) for univariate
time series analysis and Han, Linton, Oka and Whang (2016) for
multivariate time series analysis. The full references for these key
publications are as follows: (1) Linton, O., and Whang, Y. J. (2007).
The quantilogram: with an application to evaluating directional
predictability. Journal of Econometrics, 141(1), 250-282
< [...truncated...]
Author: Tatsushi Oka [aut, cre],
Heejon Han [ctb],
Oliver Linton [ctb],
Yoon-Jae Whang [ctb]
Maintainer: Tatsushi Oka <oka.econ@gmail.com>
Diff between quantilogram versions 2.2.1 dated 2022-03-05 and 3.1.1 dated 2024-08-27
DESCRIPTION | 40 ++++--- MD5 | 36 +++--- NAMESPACE | 7 + NEWS.md | 17 ++- R/crossq.R | 5 R/crossq.heatmap.R |only R/crossq.plot.R |only R/crossq.sb.R | 190 ++++++++++++++++++------------------ R/crossq.sb.opt.R | 229 ++++++++++++++++++++++---------------------- R/quantilogram-package.R | 55 +++++++++- README.md | 78 ++++++++++---- data/stock.rda |binary data/sys.risk.rda |binary man/crossq.Rd | 4 man/crossq.heatmap.Rd |only man/crossq.plot.Rd |only man/crossq.sb.Rd | 4 man/crossq.sb.opt.Rd | 8 - man/q.hit.Rd | 4 man/qreg.hit.Rd | 4 man/quantilogram-package.Rd | 38 ++++++- 21 files changed, 434 insertions(+), 285 deletions(-)
Title: Compute Moments Related to Beta-Wishart and Inverse Beta-Wishart
Distributions
Description: Provides functions for computing moments and coefficients related to the Beta-Wishart and Inverse Beta-Wishart distributions.
It includes functions for calculating the expectation of matrix-valued functions of the Beta-Wishart distribution,
coefficient matrices C_k and H_k, expectation of matrix-valued functions of the inverse Beta-Wishart distribution,
and coefficient matrices \tilde{C}_k and \tilde{H}_k. For more details, refer Hillier and Kan (2024) <https://www-2.rotman.utoronto.ca/~kan/papers/wishmom.pdf>,
"On the Expectations of Equivariant Matrix-valued Functions of Wishart and Inverse Wishart Matrices".
Author: Raymond Kan [aut, cre],
Preston Liang [aut]
Maintainer: Raymond Kan <raymond.kan@rotman.utoronto.ca>
Diff between wishmom versions 1.0.0 dated 2024-08-23 and 1.1.0 dated 2024-08-27
wishmom-1.0.0/wishmom/R/iwish_psn.R |only wishmom-1.0.0/wishmom/R/qk_coeffn.R |only wishmom-1.0.0/wishmom/R/qkn_coeffn.R |only wishmom-1.0.0/wishmom/R/wish_psn.R |only wishmom-1.0.0/wishmom/man/iwish_psn.Rd |only wishmom-1.0.0/wishmom/man/qk_coeffn.Rd |only wishmom-1.0.0/wishmom/man/qkn_coeffn.Rd |only wishmom-1.0.0/wishmom/man/wish_psn.Rd |only wishmom-1.1.0/wishmom/DESCRIPTION | 10 wishmom-1.1.0/wishmom/MD5 | 44 wishmom-1.1.0/wishmom/NAMESPACE | 13 wishmom-1.1.0/wishmom/R/denpoly.R |only wishmom-1.1.0/wishmom/R/iwish_ps.R |only wishmom-1.1.0/wishmom/R/iwish_psr.R |only wishmom-1.1.0/wishmom/R/iwishmom.R | 19 wishmom-1.1.0/wishmom/R/iwishmom_sym.R |only wishmom-1.1.0/wishmom/R/qk_coeff.R |only wishmom-1.1.0/wishmom/R/qkn_coeff.R |only wishmom-1.1.0/wishmom/R/qkn_coeffr.R |only wishmom-1.1.0/wishmom/R/wish_ps.R |only wishmom-1.1.0/wishmom/R/wishmom.R | 13 wishmom-1.1.0/wishmom/R/wishmom_sym.R |only wishmom-1.1.0/wishmom/inst/doc/wishmom_vignettes.Rmd | 756 ++++++++++++-- wishmom-1.1.0/wishmom/inst/doc/wishmom_vignettes.html | 962 ++++++++++++++---- wishmom-1.1.0/wishmom/man/denpoly.Rd |only wishmom-1.1.0/wishmom/man/iwish_ps.Rd |only wishmom-1.1.0/wishmom/man/iwish_psr.Rd |only wishmom-1.1.0/wishmom/man/iwishmom.Rd | 4 wishmom-1.1.0/wishmom/man/iwishmom_sym.Rd |only wishmom-1.1.0/wishmom/man/qk_coeff.Rd |only wishmom-1.1.0/wishmom/man/qkn_coeff.Rd |only wishmom-1.1.0/wishmom/man/qkn_coeffr.Rd |only wishmom-1.1.0/wishmom/man/wish_ps.Rd |only wishmom-1.1.0/wishmom/man/wishmom.Rd | 4 wishmom-1.1.0/wishmom/man/wishmom_sym.Rd |only wishmom-1.1.0/wishmom/vignettes/wishmom_vignettes.Rmd | 756 ++++++++++++-- 36 files changed, 2139 insertions(+), 442 deletions(-)
Title: Calculating Standardised Indices
Description: Convert a time series of observations to a time series of standardised indices that can be used to monitor variables on a common and probabilistically interpretable scale. The indices can be aggregated and rescaled to different time scales, visualised using plot capabilities, and calculated using a range of distributions. This includes flexible non-parametric and non-stationary methods.
Author: Sam Allen [aut, cre],
Noelia Otero [aut]
Maintainer: Sam Allen <sam.allen@stat.math.ethz.ch>
Diff between SEI versions 0.1.1 dated 2024-01-26 and 0.2.0 dated 2024-08-27
DESCRIPTION | 17 MD5 | 69 +-- NAMESPACE | 18 R/aggregate_xts.R | 125 ++++-- R/data.R | 2 R/fit_dist.R | 339 ++++++++++++++++-- R/get_drought.R | 172 +++++++-- R/get_pit.R | 365 +++++++++++++++++-- R/plot_sei.R | 44 +- R/std_index.R | 355 +++++++++++++----- README.md | 98 +++-- inst/doc/SEI_vignette.R | 48 +- inst/doc/SEI_vignette.Rnw | 268 +++++++++++--- inst/doc/SEI_vignette.pdf |binary man/aggregate_xts.Rd | 70 ++- man/data_supply.Rd | 2 man/fit_dist.Rd | 191 +++++++++- man/get_drought.Rd | 96 +++-- man/get_pit.Rd | 204 +++++++++- man/plot_sei.Rd | 15 man/std_index.Rd | 494 ++++++++++++++++---------- tests |only vignettes/RJ/RJwrapper.aux | 250 ++++++++----- vignettes/RJ/RJwrapper.log | 223 ++++++----- vignettes/RJ/RJwrapper.out | 28 - vignettes/RJ/allen-otero.R | 108 ++++- vignettes/RJ/allen-otero.Rmd | 353 ++++++++++++++---- vignettes/RJ/allen-otero.bib | 112 +++++ vignettes/RJ/allen-otero.html | 788 +++++++++++++++++++++++++++++++++--------- vignettes/RJ/allen-otero.log | 2 vignettes/RJ/allen-otero.pdf |binary vignettes/RJ/allen-otero.tex | 330 +++++++++++++---- vignettes/SEI_vignette.Rnw | 268 +++++++++++--- vignettes/bibliography.bib | 110 +++++ 34 files changed, 4243 insertions(+), 1321 deletions(-)
Title: Efficient Monitoring of Global Biodiversity Portfolios
Description: Biodiversity areas, especially primary forest, serve a
multitude of functions for local economy, regional functionality of
the ecosystems as well as the global health of our planet. Recently,
adverse changes in human land use practices and climatic responses to
increased greenhouse gas emissions, put these biodiversity areas under
a variety of different threats. The present package helps to analyse a
number of biodiversity indicators based on freely available
geographical datasets. It supports computational efficient routines
that allow the analysis of potentially global biodiversity portfolios.
The primary use case of the package is to support evidence based
reporting of an organization's effort to protect biodiversity areas
under threat and to identify regions were intervention is most duly
needed.
Author: Darius A. Goergen [aut, cre] ,
Om Prakash Bhandari [aut]
Maintainer: Darius A. Goergen <info@dariusgoergen.com>
Diff between mapme.biodiversity versions 0.8.0 dated 2024-07-03 and 0.9.0 dated 2024-08-27
mapme.biodiversity-0.8.0/mapme.biodiversity/inst/res/worldclim_max_temperature/wc2.1_2.5m_tmax_2010-2018.zip |only mapme.biodiversity-0.8.0/mapme.biodiversity/inst/res/worldclim_min_temperature/wc2.1_2.5m_tmin_2010-2018.zip |only mapme.biodiversity-0.8.0/mapme.biodiversity/inst/res/worldclim_precipitation/wc2.1_2.5m_prec_2010-2018.zip |only mapme.biodiversity-0.8.0/mapme.biodiversity/tests/testthat/test-get_climaticVariables.R |only mapme.biodiversity-0.9.0/mapme.biodiversity/DESCRIPTION | 54 +- mapme.biodiversity-0.9.0/mapme.biodiversity/MD5 | 260 ++++++---- mapme.biodiversity-0.9.0/mapme.biodiversity/NAMESPACE | 29 + mapme.biodiversity-0.9.0/mapme.biodiversity/NEWS.md | 57 ++ mapme.biodiversity-0.9.0/mapme.biodiversity/R/calc_biodiversity_intactness_index.R |only mapme.biodiversity-0.9.0/mapme.biodiversity/R/calc_carbon.R |only mapme.biodiversity-0.9.0/mapme.biodiversity/R/calc_deforestation_drivers.R | 1 mapme.biodiversity-0.9.0/mapme.biodiversity/R/calc_exposed_population.R |only mapme.biodiversity-0.9.0/mapme.biodiversity/R/calc_gsw_time_series.R |only mapme.biodiversity-0.9.0/mapme.biodiversity/R/calc_hfp.R |only mapme.biodiversity-0.9.0/mapme.biodiversity/R/calc_indicators.R | 108 ---- mapme.biodiversity-0.9.0/mapme.biodiversity/R/calc_ipbes_biomes.R |only mapme.biodiversity-0.9.0/mapme.biodiversity/R/calc_iucn.R |only mapme.biodiversity-0.9.0/mapme.biodiversity/R/calc_key_biodiversity_areas.R |only mapme.biodiversity-0.9.0/mapme.biodiversity/R/calc_precipitation_chelsa.R |only mapme.biodiversity-0.9.0/mapme.biodiversity/R/calc_slope.R |only mapme.biodiversity-0.9.0/mapme.biodiversity/R/calc_treecover_area.R | 7 mapme.biodiversity-0.9.0/mapme.biodiversity/R/calc_treecover_area_and_emissions.R | 1 mapme.biodiversity-0.9.0/mapme.biodiversity/R/calc_treecoverloss_emissions.R | 1 mapme.biodiversity-0.9.0/mapme.biodiversity/R/chunking.R |only mapme.biodiversity-0.9.0/mapme.biodiversity/R/get_biodiversity_intactness_index.R |only mapme.biodiversity-0.9.0/mapme.biodiversity/R/get_carbon.R |only mapme.biodiversity-0.9.0/mapme.biodiversity/R/get_chelsa.R |only mapme.biodiversity-0.9.0/mapme.biodiversity/R/get_chirps.R | 10 mapme.biodiversity-0.9.0/mapme.biodiversity/R/get_gsw_time_series.R |only mapme.biodiversity-0.9.0/mapme.biodiversity/R/get_hfp.R |only mapme.biodiversity-0.9.0/mapme.biodiversity/R/get_ipbes_biomes.R |only mapme.biodiversity-0.9.0/mapme.biodiversity/R/get_iucn.R |only mapme.biodiversity-0.9.0/mapme.biodiversity/R/get_key_biodiversity_areas.R |only mapme.biodiversity-0.9.0/mapme.biodiversity/R/get_nelson_et_al.R | 5 mapme.biodiversity-0.9.0/mapme.biodiversity/R/get_resources.R | 2 mapme.biodiversity-0.9.0/mapme.biodiversity/R/get_ucdp_ged.R | 2 mapme.biodiversity-0.9.0/mapme.biodiversity/R/get_worldclim.R | 89 +-- mapme.biodiversity-0.9.0/mapme.biodiversity/R/get_worldpop.R | 2 mapme.biodiversity-0.9.0/mapme.biodiversity/R/portfolio.R | 22 mapme.biodiversity-0.9.0/mapme.biodiversity/R/register.R | 28 - mapme.biodiversity-0.9.0/mapme.biodiversity/R/spatial-utils.R | 102 +-- mapme.biodiversity-0.9.0/mapme.biodiversity/R/utils.R | 11 mapme.biodiversity-0.9.0/mapme.biodiversity/README.md | 154 +++-- mapme.biodiversity-0.9.0/mapme.biodiversity/build/partial.rdb |binary mapme.biodiversity-0.9.0/mapme.biodiversity/build/vignette.rds |binary mapme.biodiversity-0.9.0/mapme.biodiversity/inst/doc/quickstart.R | 6 mapme.biodiversity-0.9.0/mapme.biodiversity/inst/doc/quickstart.Rmd | 27 - mapme.biodiversity-0.9.0/mapme.biodiversity/inst/doc/quickstart.html | 95 +-- mapme.biodiversity-0.9.0/mapme.biodiversity/inst/extdata/burundi_worldpop.tif |only mapme.biodiversity-0.9.0/mapme.biodiversity/inst/res/biodiversity_intactness_index |only mapme.biodiversity-0.9.0/mapme.biodiversity/inst/res/chelsa |only mapme.biodiversity-0.9.0/mapme.biodiversity/inst/res/global_surface_water_change/change_60W_10Nv1_4_2021.tif |binary 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mapme.biodiversity-0.9.0/mapme.biodiversity/tests/testthat/test-utils.R | 1 mapme.biodiversity-0.9.0/mapme.biodiversity/vignettes/quickstart.Rmd | 27 - 153 files changed, 696 insertions(+), 561 deletions(-)
More information about mapme.biodiversity at CRAN
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Title: A Framework for Robust Shiny Applications
Description: An opinionated framework for building a production-ready
'Shiny' application. This package contains a series of tools for
building a robust 'Shiny' application from start to finish.
Author: Colin Fay [cre, aut] ,
Vincent Guyader [aut] ,
Sebastien Rochette [aut] ,
Cervan Girard [aut] ,
Novica Nakov [ctb],
David Granjon [ctb],
Arthur Breant [ctb],
Antoine Languillaume [ctb],
Ilya Zarubin [ctb],
ThinkR [cph]
Maintainer: Colin Fay <contact@colinfay.me>
Diff between golem versions 0.5.0 dated 2024-08-19 and 0.5.1 dated 2024-08-27
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NEWS.md | 4 ++++ R/use_files.R | 4 ---- README.md | 10 +++++----- inst/doc/a_start.html | 4 ++-- inst/doc/b_dev.html | 4 ++-- inst/doc/c_deploy.html | 4 ++-- inst/doc/d_js.html | 4 ++-- inst/doc/e_config.html | 4 ++-- 10 files changed, 31 insertions(+), 31 deletions(-)
Title: Analyse Open-Ended Survey Responses in Finnish
Description: Annotates Finnish textual survey responses into CoNLL-U format using Finnish treebanks from <https://universaldependencies.org/format.html> using UDPipe as described in Straka and Straková (2017) <doi:10.18653/v1/K17-3009>. Formatted data is then analysed using single or comparison n-gram plots, wordclouds, summary tables and Concept Network plots. The Concept Network plots use the TextRank algorithm as outlined in Mihalcea, Rada & Tarau, Paul (2004) <https://aclanthology.org/W04-3252/>.
Author: Adeline Clarke [cre, aut],
Krista Lagus [aut],
Katja Laine [aut],
Maria Litova [aut],
Matti Nelimarkka [aut],
Joni Oksanen [aut],
Jaakko Peltonen [aut],
Tuukka Oikarinen [aut],
Jani-Matti Tirkkonen [aut],
Ida Toivanen [aut],
Maria Valaste [aut],
Shan [...truncated...]
Maintainer: Adeline Clarke <adelinepclarke@gmail.com>
Diff between finnsurveytext versions 1.0.0 dated 2024-02-16 and 2.0.0 dated 2024-08-27
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More information about finnsurveytext at CRAN
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Title: Helper Functions for Bayesian Analyses
Description: Functions to 'numericise' 'R' objects (coerce to numeric
objects), summarise 'MCMC' (Monte Carlo Markov Chain) samples and
calculate deviance residuals as well as 'R' translations of some
'BUGS' (Bayesian Using Gibbs Sampling), 'JAGS' (Just Another Gibbs
Sampler), 'STAN' and 'TMB' (Template Model Builder) functions.
Author: Nicole Hill [aut, cre] ,
Joe Thorley [aut] ,
Kirill Mueller [ctb] ,
Nadine Hussein [ctb] ,
Poisson Consulting [cph, fnd]
Maintainer: Nicole Hill <nicole@poissonconsulting.ca>
Diff between extras versions 0.7.2 dated 2024-08-22 and 0.7.3 dated 2024-08-27
extras-0.7.2/extras/R/namespace.R |only extras-0.7.3/extras/DESCRIPTION | 6 - extras-0.7.3/extras/MD5 | 57 ++++------ extras-0.7.3/extras/NAMESPACE | 1 extras-0.7.3/extras/NEWS.md | 4 extras-0.7.3/extras/R/dev.R | 3 extras-0.7.3/extras/R/extras-package.R | 2 extras-0.7.3/extras/R/fabs.R | 1 extras-0.7.3/extras/R/log-lik.R | 3 extras-0.7.3/extras/R/numericise.R | 1 extras-0.7.3/extras/R/params.R | 1 extras-0.7.3/extras/R/ran.R | 3 extras-0.7.3/extras/R/res.R | 3 extras-0.7.3/extras/R/sens.R | 2 extras-0.7.3/extras/R/skewnorm.R | 30 ----- extras-0.7.3/extras/inst/WORDLIST | 2 extras-0.7.3/extras/inst/doc/beta-binomial-deviance-residuals.R | 11 + extras-0.7.3/extras/inst/doc/beta-binomial-deviance-residuals.Rmd | 12 +- extras-0.7.3/extras/man/dev_skewnorm.Rd | 2 extras-0.7.3/extras/man/fabs.Rd | 3 extras-0.7.3/extras/man/log_lik_skewnorm.Rd | 2 extras-0.7.3/extras/man/numericise.Rd | 2 extras-0.7.3/extras/man/ran_skewnorm.Rd | 2 extras-0.7.3/extras/man/res_skewnorm.Rd | 2 extras-0.7.3/extras/man/sens_skewnorm.Rd | 2 extras-0.7.3/extras/man/skewnorm.Rd | 2 extras-0.7.3/extras/tests/testthat/test-chk-index.R | 4 extras-0.7.3/extras/tests/testthat/test-sens.R | 21 +++ extras-0.7.3/extras/tests/testthat/test-skewnorm.R | 1 extras-0.7.3/extras/vignettes/beta-binomial-deviance-residuals.Rmd | 12 +- 30 files changed, 115 insertions(+), 82 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-03-08 0.8.1
2022-02-01 0.7.5
2022-01-28 0.7.4
2021-08-04 0.7.2
2021-02-22 0.6.6
2021-02-16 0.6.5
2020-11-20 0.6.4
2020-06-12 0.6.3
Title: Import XY-Data into R
Description: Provides access to the 'xylib' C library for to import xy
data from powder diffraction, spectroscopy and other experimental methods.
Author: Sebastian Kreutzer [aut, trl, cre]
,
Johannes Friedrich [aut] ,
RLum Team [ctb],
Marcin Wojdyr [cph] ,
Peng Zhang [cph]
Maintainer: Sebastian Kreutzer <sebastian.kreutzer@uni-heidelberg.de>
Diff between rxylib versions 0.2.13 dated 2024-08-26 and 0.2.14 dated 2024-08-27
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS.md | 4 ++-- man/convert_xy2TKA.Rd | 2 +- man/read_xyData.Rd | 2 +- man/rxylib-package.Rd | 2 +- src/Makevars | 4 ++-- 7 files changed, 18 insertions(+), 18 deletions(-)
Title: Simulation and Resampling Methods for Epistemic Fuzzy Data
Description: Random simulations of fuzzy numbers are still a challenging problem. The aim of this package is to provide the respective
procedures to simulate fuzzy random variables, especially in the case of the piecewise linear fuzzy numbers (PLFNs,
see Coroianua et al. (2013) <doi:10.1016/j.fss.2013.02.005> for the further details).
Additionally, the special resampling algorithms known as the epistemic bootstrap are provided (see Grzegorzewski and Romaniuk
(2022) <doi:10.34768/amcs-2022-0021>, Grzegorzewski and Romaniuk (2022) <doi:10.1007/978-3-031-08974-9_39>)
together with the functions to apply statistical tests and estimate various characteristics based on the epistemic bootstrap.
The package also includes a real-life data set of epistemic fuzzy triangular numbers.
The fuzzy numbers used in this package are consistent with the 'FuzzyNumbers' package.
Author: Maciej Romaniuk [cre, aut] ,
Przemyslaw Grzegorzewski [aut]
,
Abbas Parchami [aut] ,
Luis Carvalho [ctb, cph]
Maintainer: Maciej Romaniuk <mroman@ibspan.waw.pl>
Diff between FuzzySimRes versions 0.4.0 dated 2024-03-14 and 0.4.3 dated 2024-08-27
DESCRIPTION | 12 ++++++------ MD5 | 6 +++--- src/kolmim.c | 8 ++++---- src/ks.c | 18 +++++++++--------- 4 files changed, 22 insertions(+), 22 deletions(-)
Title: Friendly Input-Output Analysis
Description: Simplifies the process of importing and managing input-output
matrices from 'Microsoft Excel' into R, and provides a suite of functions for
analysis. It leverages the 'R6' class for clean, memory-efficient
object-oriented programming. Furthermore, all linear algebra computations are
implemented in 'Rust' to achieve highly optimized performance.
Author: Alberson da Silva Miranda [aut, cre, cph]
,
Celso Bissoli Sessa [dtc]
Maintainer: Alberson da Silva Miranda <albersonmiranda@hotmail.com>
Diff between fio versions 0.1.1 dated 2024-08-21 and 0.1.2 dated 2024-08-27
DESCRIPTION | 6 ++-- MD5 | 15 ++++++----- NEWS.md | 6 ++++ R/helpers.R | 13 ++++++++++ README.md | 1 build/partial.rdb |binary inst/doc/getting_started.html | 2 - tests/testthat/test-empty-urls.R |only tools/msrv.R | 50 +++++++++++++++++++++++++++++---------- 9 files changed, 70 insertions(+), 23 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-08-21 0.3.0
Title: MAny-Group MAtching
Description: Balancing quasi-experimental field research for effects of covariates is fundamental for drawing causal inference. Propensity Score Matching deals with this issue but current
techniques are restricted to binary treatment variables. Moreover, they provide several solutions without providing a comprehensive framework on choosing the best model. The
MAGMA R-package addresses these restrictions by offering nearest neighbor matching for two to four groups. It also includes the option to match data of a 2x2 design. In addition,
MAGMA includes a framework for evaluating the post-matching balance. The package includes functions for the matching process and matching reporting. We provide a tutorial on
MAGMA as vignette. More information on MAGMA can be found in Feuchter, M. D., Urban, J., Scherrer V., Breit, M. L., and Preckel F. (2022) <https://osf.io/p47nc/>.
Author: Julian Urban [aut, cre],
Markus D. Feuchter [aut],
Vsevolod Scherrer [aut],
Moritz L. Breit [aut],
Franzis Preckel [aut]
Maintainer: Julian Urban <urbanj@uni-trier.de>
Diff between MAGMA.R versions 1.0.1 dated 2024-03-19 and 1.0.3 dated 2024-08-27
DESCRIPTION | 24 ++--- MD5 | 45 ++++++---- NAMESPACE | 3 R/Desc_function.R | 37 ++++---- R/MAGMA_exact_function.R | 2 R/Non_parametric_descs.R | 150 ++++++++++++++++++++++++++------- R/Pillai_functions.R | 13 ++ R/Visualizing_MAGMA_functions.R | 178 +++++++++++++++++++++++++++++++++++----- R/d_ratio_functions.R | 144 +++++++++++++++++--------------- R/mean_g_functions.R | 58 +++++-------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/Vignette.html | 40 ++++---- man/Balance_MAGMA.Rd | 18 +++- man/J_group_size.Rd |only man/MAGMA_desc.Rd | 25 ++--- man/MAGMA_exact.Rd | 2 man/Pillai_iterativ.Rd |only man/adj_d_ratio.Rd |only man/build_value_matrix.Rd |only man/cohen_d.Rd |only man/distance_estimator.Rd |only man/effect_nominal.Rd |only man/effect_ordinal.Rd |only man/initial_unbalance.Rd | 15 +++ man/inner_d.Rd |only man/match_iterative.Rd |only man/mean_g_meta.Rd |only man/row_nominal.Rd |only man/row_ordinal.Rd |only 30 files changed, 511 insertions(+), 243 deletions(-)
Title: Markov Chain Monte Carlo (MCMC) Package
Description: Contains functions to perform Bayesian
inference using posterior simulation for a number of
statistical models. Most simulation is done in compiled C++
written in the Scythe Statistical Library Version 1.0.3. All
models return 'coda' mcmc objects that can then be summarized
using the 'coda' package. Some useful
utility functions such as density functions,
pseudo-random number generators for statistical
distributions, a general purpose Metropolis sampling algorithm,
and tools for visualization are provided.
Author: Andrew D. Martin [aut],
Kevin M. Quinn [aut],
Jong Hee Park [aut, cre],
Ghislain Vieilledent [ctb],
Michael Malecki [ctb],
Matthew Blackwell [ctb],
Keith Poole [ctb],
Craig Reed [ctb],
Ben Goodrich [ctb],
Qiushi Yu [ctb],
Ross Ihaka [cph],
The R Deve [...truncated...]
Maintainer: Jong Hee Park <jongheepark@snu.ac.kr>
Diff between MCMCpack versions 1.7-0 dated 2024-01-18 and 1.7-1 dated 2024-08-27
DESCRIPTION | 78 +++++++++++++++++- MD5 | 150 ++++++++++++++++++------------------ R/HDPHMMnegbin.R | 2 R/HDPHMMpoisson.R | 2 R/HDPHSMMnegbin.R | 2 R/MCMCSVDreg.R | 2 R/MCMCdynamicEI.R | 2 R/MCMCfactanal.R | 2 R/MCMChierEI.R | 2 R/MCMChlogit.R | 2 R/MCMChpoisson.R | 2 R/MCMChregress.R | 2 R/MCMCirt1d.R | 2 R/MCMCirtHier1d.R | 2 R/MCMCirtKd.R | 2 R/MCMCirtKdRob.R | 2 R/MCMClogit.R | 2 R/MCMCmetrop1R.R | 2 R/MCMCmixfactanal.R | 2 R/MCMCmnl.R | 2 R/MCMCnegbin.R | 2 R/MCMCnegbinChange.R | 2 R/MCMCoprobit.R | 2 R/MCMCordfactanal.R | 2 R/MCMCpaircompare.R | 2 R/MCMCpaircompare2d.R | 2 R/MCMCpaircompare2dDP.R | 2 R/MCMCpoisson.R | 2 R/MCMCprobit.R | 2 R/MCMCquantreg.R | 2 R/MCMCregress.R | 2 R/MCMCtobit.R | 5 - R/SSVSquantreg.R | 2 R/scythe.R | 4 build/partial.rdb |binary man/HDPHMMnegbin.Rd | 2 man/HDPHMMpoisson.Rd | 2 man/HDPHSMMnegbin.Rd | 2 man/MCMCSVDreg.Rd | 2 man/MCMCdynamicEI.Rd | 2 man/MCMCfactanal.Rd | 2 man/MCMChierEI.Rd | 2 man/MCMChlogit.Rd | 2 man/MCMChpoisson.Rd | 2 man/MCMChregress.Rd | 2 man/MCMCirt1d.Rd | 2 man/MCMCirtHier1d.Rd | 2 man/MCMCirtKd.Rd | 2 man/MCMCirtKdRob.Rd | 2 man/MCMClogit.Rd | 2 man/MCMCmetrop1R.Rd | 2 man/MCMCmixfactanal.Rd | 2 man/MCMCmnl.Rd | 2 man/MCMCnegbin.Rd | 2 man/MCMCnegbinChange.Rd | 2 man/MCMCoprobit.Rd | 2 man/MCMCordfactanal.Rd | 2 man/MCMCpaircompare.Rd | 2 man/MCMCpaircompare2d.Rd | 2 man/MCMCpaircompare2dDP.Rd | 2 man/MCMCpoisson.Rd | 2 man/MCMCprobit.Rd | 2 man/MCMCquantreg.Rd | 2 man/MCMCregress.Rd | 2 man/MCMCtobit.Rd | 5 - man/SSVSquantreg.Rd | 2 man/read.Scythe.Rd | 2 man/write.Scythe.Rd | 2 src/MCMCirtKdRob.cc | 8 - src/MCMClogituserprior.cc | 29 +++--- src/MCMCmetrop1R.cc | 29 +++--- src/MCMCnbutil.cc | 3 src/error.h | 4 src/matrix_bidirectional_iterator.h | 3 src/matrix_forward_iterator.h | 5 - src/matrix_random_access_iterator.h | 10 +- 76 files changed, 264 insertions(+), 193 deletions(-)
Title: Process Orbitrap Isotopocule Data
Description: Read and process isotopocule data from an Orbitrap Isotope Solutions mass spectrometer. Citation: Kantnerova et al. (Nature Protocols, 2024).
Author: Caj Neubauer [aut, cre, cph] ,
Sebastian Kopf [aut] ,
Kristyna Kantnerova [aut]
Maintainer: Caj Neubauer <caj.neubauer@colorado.edu>
Diff between isoorbi versions 1.3.0 dated 2023-11-09 and 1.3.1 dated 2024-08-27
isoorbi-1.3.0/isoorbi/vignettes/file5ac061132fc0.html |only isoorbi-1.3.0/isoorbi/vignettes/file74741a54cc0.html |only isoorbi-1.3.0/isoorbi/vignettes/file7e107c5a76f1.html |only isoorbi-1.3.1/isoorbi/DESCRIPTION | 12 isoorbi-1.3.1/isoorbi/LICENSE | 4 isoorbi-1.3.1/isoorbi/MD5 | 191 isoorbi-1.3.1/isoorbi/NAMESPACE | 84 isoorbi-1.3.1/isoorbi/NEWS.md | 171 isoorbi-1.3.1/isoorbi/R/blocks_functions.R | 2014 - isoorbi-1.3.1/isoorbi/R/export_functions.R | 244 isoorbi-1.3.1/isoorbi/R/helpers.R | 22 isoorbi-1.3.1/isoorbi/R/import-standalone-purrr.R | 488 isoorbi-1.3.1/isoorbi/R/isoorbi.R | 28 isoorbi-1.3.1/isoorbi/R/loading_functions.R | 592 isoorbi-1.3.1/isoorbi/R/plotting_functions.R | 998 isoorbi-1.3.1/isoorbi/R/ratio_functions.R | 936 isoorbi-1.3.1/isoorbi/R/settings.R | 182 isoorbi-1.3.1/isoorbi/R/shotnoise_functions.R | 398 isoorbi-1.3.1/isoorbi/R/utility_functions.R | 1184 isoorbi-1.3.1/isoorbi/README.md | 120 isoorbi-1.3.1/isoorbi/build/vignette.rds |binary isoorbi-1.3.1/isoorbi/inst/CITATION | 50 isoorbi-1.3.1/isoorbi/inst/doc/dual_inlet.R | 308 isoorbi-1.3.1/isoorbi/inst/doc/dual_inlet.Rmd | 406 isoorbi-1.3.1/isoorbi/inst/doc/dual_inlet.html | 1519 isoorbi-1.3.1/isoorbi/inst/doc/flow_injection.R | 130 isoorbi-1.3.1/isoorbi/inst/doc/flow_injection.Rmd | 232 isoorbi-1.3.1/isoorbi/inst/doc/flow_injection.html | 888 isoorbi-1.3.1/isoorbi/inst/doc/isoxl_demo.Rmd | 36 isoorbi-1.3.1/isoorbi/inst/doc/isoxl_demo.html | 542 isoorbi-1.3.1/isoorbi/inst/doc/quick_start.R | 108 isoorbi-1.3.1/isoorbi/inst/doc/quick_start.Rmd | 176 isoorbi-1.3.1/isoorbi/inst/doc/quick_start.html | 836 isoorbi-1.3.1/isoorbi/inst/doc/shot_noise.R | 138 isoorbi-1.3.1/isoorbi/inst/doc/shot_noise.Rmd | 302 isoorbi-1.3.1/isoorbi/inst/doc/shot_noise.html | 1166 isoorbi-1.3.1/isoorbi/inst/extdata/description_testfiles.txt | 62 isoorbi-1.3.1/isoorbi/inst/extdata/testfile_dual_inlet.isox |10370 ++--- isoorbi-1.3.1/isoorbi/inst/extdata/testfile_dual_inlet_new.isox |19726 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isoorbi-1.3.1/isoorbi/man/orbi_default_theme.Rd | 38 isoorbi-1.3.1/isoorbi/man/orbi_define_basepeak.Rd | 52 isoorbi-1.3.1/isoorbi/man/orbi_define_block_for_flow_injection.Rd | 70 isoorbi-1.3.1/isoorbi/man/orbi_define_blocks_for_dual_inlet.Rd | 88 isoorbi-1.3.1/isoorbi/man/orbi_export_data_to_excel.Rd | 62 isoorbi-1.3.1/isoorbi/man/orbi_filter_flagged_data.Rd | 34 isoorbi-1.3.1/isoorbi/man/orbi_filter_isox.Rd | 92 isoorbi-1.3.1/isoorbi/man/orbi_filter_satellite_peaks.Rd | 28 isoorbi-1.3.1/isoorbi/man/orbi_filter_scan_intensity.Rd | 32 isoorbi-1.3.1/isoorbi/man/orbi_filter_weak_isotopocules.Rd | 28 isoorbi-1.3.1/isoorbi/man/orbi_find_isox.Rd | 44 isoorbi-1.3.1/isoorbi/man/orbi_flag_outliers.Rd | 68 isoorbi-1.3.1/isoorbi/man/orbi_flag_satellite_peaks.Rd | 62 isoorbi-1.3.1/isoorbi/man/orbi_flag_weak_isotopocules.Rd | 58 isoorbi-1.3.1/isoorbi/man/orbi_get_blocks_info.Rd | 46 isoorbi-1.3.1/isoorbi/man/orbi_get_isotopocule_coverage.Rd | 34 isoorbi-1.3.1/isoorbi/man/orbi_get_settings.Rd | 40 isoorbi-1.3.1/isoorbi/man/orbi_plot_isotopocule_coverage.Rd | 62 isoorbi-1.3.1/isoorbi/man/orbi_plot_raw_data.Rd | 112 isoorbi-1.3.1/isoorbi/man/orbi_plot_satellite_peaks.Rd | 82 isoorbi-1.3.1/isoorbi/man/orbi_plot_shot_noise.Rd | 70 isoorbi-1.3.1/isoorbi/man/orbi_read_isox.Rd | 70 isoorbi-1.3.1/isoorbi/man/orbi_segment_blocks.Rd | 50 isoorbi-1.3.1/isoorbi/man/orbi_set_settings.Rd | 82 isoorbi-1.3.1/isoorbi/man/orbi_simplify_isox.Rd | 48 isoorbi-1.3.1/isoorbi/man/orbi_summarize_results.Rd | 110 isoorbi-1.3.1/isoorbi/tests/testthat.R | 10 isoorbi-1.3.1/isoorbi/tests/testthat/test_blocks_functions.R | 744 isoorbi-1.3.1/isoorbi/tests/testthat/test_export_functions.R | 130 isoorbi-1.3.1/isoorbi/tests/testthat/test_files/first10rows.csv | 22 isoorbi-1.3.1/isoorbi/tests/testthat/test_files/missing_column.isox | 14 isoorbi-1.3.1/isoorbi/tests/testthat/test_helper_functions.R | 40 isoorbi-1.3.1/isoorbi/tests/testthat/test_loading_functions.R | 334 isoorbi-1.3.1/isoorbi/tests/testthat/test_plotting_functions.R | 284 isoorbi-1.3.1/isoorbi/tests/testthat/test_ratio_functions.R | 620 isoorbi-1.3.1/isoorbi/tests/testthat/test_settings.R | 84 isoorbi-1.3.1/isoorbi/tests/testthat/test_shotnoise_functions.R | 202 isoorbi-1.3.1/isoorbi/tests/testthat/test_utility_functions.R | 604 isoorbi-1.3.1/isoorbi/vignettes/dual_inlet.Rmd | 406 isoorbi-1.3.1/isoorbi/vignettes/flow_injection.Rmd | 232 isoorbi-1.3.1/isoorbi/vignettes/isoxl_demo.Rmd | 36 isoorbi-1.3.1/isoorbi/vignettes/quick_start.Rmd | 176 isoorbi-1.3.1/isoorbi/vignettes/shot_noise.Rmd | 302 98 files changed, 32090 insertions(+), 32092 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-05-20 0.1.1
2017-05-04 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-06-17 1.1.0
2020-11-09 1.0.0
2020-07-07 0.2.0
Title: Whole Genome Average Interval Mapping for QTL Detection and
Estimation using ASReml-R
Description: A computationally efficient whole genome approach to detecting and estimating significant QTL in linkage maps using the flexible linear mixed modelling functionality of ASReml-R.
Author: Julian Taylor [aut, cre],
Ari Verbyla [aut]
Maintainer: Julian Taylor <julian.taylor@adelaide.edu.au>
Diff between wgaim versions 2.0-1 dated 2019-10-03 and 2.0-6 dated 2024-08-27
wgaim-2.0-1/wgaim/inst/NEWS.Rd |only wgaim-2.0-1/wgaim/inst/doc/CxRExample.R |only wgaim-2.0-1/wgaim/inst/doc/RxKExample.R |only wgaim-2.0-1/wgaim/inst/doc/SxTExample.R |only wgaim-2.0-6/wgaim/DESCRIPTION | 22 - wgaim-2.0-6/wgaim/MD5 | 61 +-- wgaim-2.0-6/wgaim/NEWS.md |only wgaim-2.0-6/wgaim/R/wgaim16.R | 40 -- wgaim-2.0-6/wgaim/R/zzz.R | 2 wgaim-2.0-6/wgaim/README.md |only wgaim-2.0-6/wgaim/build/vignette.rds |binary wgaim-2.0-6/wgaim/inst/CITATION | 9 wgaim-2.0-6/wgaim/inst/doc/wgaim_intro.Rmd | 188 +++++----- wgaim-2.0-6/wgaim/inst/doc/wgaim_intro.html | 487 +++++++++++++++++++--------- wgaim-2.0-6/wgaim/man/cross2int.Rd | 4 wgaim-2.0-6/wgaim/man/genoCxR.Rd | 50 +- wgaim-2.0-6/wgaim/man/linkMap.cross.Rd | 2 wgaim-2.0-6/wgaim/man/linkMap.default.Rd | 4 wgaim-2.0-6/wgaim/man/linkMap.wgaim.Rd | 2 wgaim-2.0-6/wgaim/man/outStat.Rd | 2 wgaim-2.0-6/wgaim/man/phenoCxR.Rd | 60 +-- wgaim-2.0-6/wgaim/man/qtlTable.Rd | 2 wgaim-2.0-6/wgaim/man/summary.wgaim.Rd | 2 wgaim-2.0-6/wgaim/man/tr.wgaim.Rd | 2 wgaim-2.0-6/wgaim/man/wgaim-package.Rd | 4 wgaim-2.0-6/wgaim/man/wgaim.asreml.Rd | 22 - wgaim-2.0-6/wgaim/vignettes/biometrics.csl | 340 +++++++++---------- wgaim-2.0-6/wgaim/vignettes/intro.bib | 2 wgaim-2.0-6/wgaim/vignettes/link-1.png |binary wgaim-2.0-6/wgaim/vignettes/out-1.png |binary wgaim-2.0-6/wgaim/vignettes/out-2.png |binary wgaim-2.0-6/wgaim/vignettes/residuals-1.png |binary wgaim-2.0-6/wgaim/vignettes/rxk.txt |only wgaim-2.0-6/wgaim/vignettes/variogram-1.png |binary wgaim-2.0-6/wgaim/vignettes/wgaim_intro.Rmd | 188 +++++----- 35 files changed, 853 insertions(+), 642 deletions(-)
Title: Parse Full Text XML Documents from PubMed Central
Description: Parse XML documents from the Open Access subset of Europe PubMed Central <https://europepmc.org>
including section paragraphs, tables, captions and references.
Author: Chris Stubben [aut, cre]
Maintainer: Chris Stubben <chris.stubben@hci.utah.edu>
Diff between tidypmc versions 1.7 dated 2019-08-01 and 2.0 dated 2024-08-27
tidypmc-1.7/tidypmc/R/separate_genes.R |only tidypmc-1.7/tidypmc/man/separate_genes.Rd |only tidypmc-2.0/tidypmc/DESCRIPTION | 10 tidypmc-2.0/tidypmc/MD5 | 54 - tidypmc-2.0/tidypmc/NAMESPACE | 4 tidypmc-2.0/tidypmc/NEWS.md |only tidypmc-2.0/tidypmc/R/extract_acronyms.R |only tidypmc-2.0/tidypmc/R/global.R |only tidypmc-2.0/tidypmc/R/path_string.R | 2 tidypmc-2.0/tidypmc/R/pmc_metadata.R | 5 tidypmc-2.0/tidypmc/R/pmc_text.R | 50 - tidypmc-2.0/tidypmc/R/repeat_sub.R | 2 tidypmc-2.0/tidypmc/R/separate_text.R | 1 tidypmc-2.0/tidypmc/R/tidypmc-package.R | 7 tidypmc-2.0/tidypmc/build/vignette.rds |binary tidypmc-2.0/tidypmc/inst/doc/pmcftp.R | 8 tidypmc-2.0/tidypmc/inst/doc/pmcftp.Rmd | 2 tidypmc-2.0/tidypmc/inst/doc/pmcftp.html | 347 ++++--- tidypmc-2.0/tidypmc/inst/doc/tidypmc.R | 8 tidypmc-2.0/tidypmc/inst/doc/tidypmc.Rmd | 7 tidypmc-2.0/tidypmc/inst/doc/tidypmc.html | 896 ++++++++++---------- tidypmc-2.0/tidypmc/man/extract_acronyms.Rd |only tidypmc-2.0/tidypmc/man/path_string.Rd |only tidypmc-2.0/tidypmc/man/pmc_text.Rd | 4 tidypmc-2.0/tidypmc/man/repeat_sub.Rd |only tidypmc-2.0/tidypmc/man/separate_text.Rd | 1 tidypmc-2.0/tidypmc/man/tidypmc.Rd | 14 tidypmc-2.0/tidypmc/tests/testthat/tests-separate.R | 6 tidypmc-2.0/tidypmc/vignettes/pmcftp.Rmd | 2 tidypmc-2.0/tidypmc/vignettes/pmcftp.md | 15 tidypmc-2.0/tidypmc/vignettes/tidypmc.Rmd | 7 tidypmc-2.0/tidypmc/vignettes/tidypmc.md | 392 ++++---- 32 files changed, 970 insertions(+), 874 deletions(-)
Title: Kriging Models using the 'libKriging' Library
Description: Interface to 'libKriging' 'C++' library <https://github.com/libKriging> that should
provide most standard Kriging / Gaussian process regression features
(like in 'DiceKriging', 'kergp' or 'RobustGaSP' packages).
'libKriging' relies on Armadillo linear algebra library (Apache 2 license) by Conrad Sanderson,
'lbfgsb_cpp' is a 'C++' port around 'lbfgsb' library (BSD-3 license) by
Ciyou Zhu, Richard Byrd, Jorge Nocedal and Jose Luis Morales used for hyperparameters optimization.
Author: Yann Richet [aut, cre] ,
Pascal Have [aut],
Yves Deville [aut],
Conrad Sanderson [ctb],
Ciyou Zhu [ctb],
Richard Byrd [ctb],
Jorge Nocedal [ctb],
Jose Luis Morales [ctb],
Mike Smith [ctb]
Maintainer: Yann Richet <yann.richet@irsn.fr>
Diff between rlibkriging versions 0.9-0 dated 2024-08-23 and 0.9-0.1 dated 2024-08-27
DESCRIPTION | 8 +-- MD5 | 22 +++++----- src/libK/README.md | 6 +- src/libK/bindings/R/rlibkriging/tests/testthat/test-LinearAlgebra.R | 2 src/libK/src/lib/Kriging.cpp | 11 +++-- src/libK/src/lib/NoiseKriging.cpp | 10 +++- src/libK/src/lib/NuggetKriging.cpp | 10 +++- src/libK/src/lib/include/libKriging/Kriging.hpp | 1 src/libK/src/lib/include/libKriging/NoiseKriging.hpp | 1 src/libK/src/lib/include/libKriging/NuggetKriging.hpp | 1 tests/test-LinearAlgebra.R | 2 tools/setup.sh | 4 - 12 files changed, 47 insertions(+), 31 deletions(-)
Title: Sample Size Calculations for Longitudinal Data
Description: Compute power and sample size for linear models of longitudinal
data. Supported models include mixed-effects models and models fit by
generalized least squares and generalized estimating equations. The package
is described in Iddi and Donohue (2022) <DOI:10.32614/RJ-2022-022>. Relevant
formulas are derived by Liu and Liang (1997) <DOI:10.2307/2533554>,
Diggle et al (2002) <ISBN:9780199676750>, and Lu, Luo, and Chen (2008)
<DOI:10.2202/1557-4679.1098>.
Author: Michael C. Donohue [aut, cre],
Steve D. Edland [ctb],
Nan Hu [ctb]
Maintainer: Michael C. Donohue <mdonohue@usc.edu>
Diff between longpower versions 1.0.25 dated 2024-01-23 and 1.0.26 dated 2024-08-27
DESCRIPTION | 6 +-- MD5 | 12 +++---- build/partial.rdb |binary build/vignette.rds |binary inst/doc/longpower.Rmd | 24 +++++++------- inst/doc/longpower.html | 78 +++++++++++++++++++++++++++--------------------- vignettes/longpower.Rmd | 24 +++++++------- 7 files changed, 78 insertions(+), 66 deletions(-)
Title: Label Data Frames, Variables, and Values
Description: Create and use data frame labels for data frame objects (frame labels), their columns (name labels), and individual values of a column (value labels). Value labels include one-to-one and many-to-one labels for nominal and ordinal variables, as well as numerical range-based value labels for continuous variables. Convert value-labeled variables so each value is replaced by its corresponding value label. Add values-converted-to-labels columns to a value-labeled data frame while preserving parent columns. Filter and subset a value-labeled data frame using labels, while returning results in terms of values. Overlay labels in place of values in common R commands to increase interpretability. Generate tables of value frequencies, with categories expressed as raw values or as labels. Access data frames that show value-to-label mappings for easy reference.
Author: Robert Hartman [aut, cre],
The MITRE Corporation [cph]
Maintainer: Robert Hartman <rohartman@gmail.com>
Diff between labelr versions 0.1.7 dated 2024-07-19 and 0.1.8 dated 2024-08-27
DESCRIPTION | 6 ++-- MD5 | 8 +++--- NEWS.md | 3 ++ R/tabl.R | 2 + inst/doc/labelr-special-topics.html | 44 ++++++++++++++++++------------------ 5 files changed, 34 insertions(+), 29 deletions(-)
Title: Genetic Analysis Package
Description: As first reported [Zhao, J. H. 2007. "gap: Genetic Analysis Package". J Stat Soft 23(8):1-18.
<doi:10.18637/jss.v023.i08>], it is designed as an integrated package for genetic data
analysis of both population and family data. Currently, it contains functions for
sample size calculations of both population-based and family-based designs, probability
of familial disease aggregation, kinship calculation, statistics in linkage analysis,
and association analysis involving genetic markers including haplotype analysis with or
without environmental covariates. Over years, the package has been developed in-between
many projects hence also in line with the name (gap).
Author: Jing Hua Zhao [aut, cre] ,
Kurt Hornik [ctb],
Brian Ripley [ctb],
Uwe Ligges [ctb],
Achim Zeileis [ctb]
Maintainer: Jing Hua Zhao <jinghuazhao@hotmail.com>
Diff between gap versions 1.5-3 dated 2023-08-26 and 1.6 dated 2024-08-27
ChangeLog | 10 ++ DESCRIPTION | 13 ++- MD5 | 58 ++++++++-------- NAMESPACE | 1 R/METAL_forestplot.R | 6 + R/ccsize.R | 2 R/circos.mhtplot.R | 2 R/circos.mhtplot2.R | 21 ++---- R/gap.R | 1 R/qtl2dplot.R | 24 +++++++ R/qtlFinder.R |only build/partial.rdb |binary build/vignette.rds |binary data/hg18.rda |binary data/hg19.rda |binary data/hg38.rda |binary inst/REFERENCES.bib | 60 ----------------- inst/doc/gap.R | 29 +++----- inst/doc/gap.Rmd | 36 ++++++---- inst/doc/gap.html | 161 ++++++++++++++++++++++++++++------------------- inst/doc/jss.pdf |binary inst/doc/shinygap.html | 4 - inst/shinygap/R/global.R | 2 man/METAL_forestplot.Rd | 3 man/ccsize.Rd | 2 man/circos.mhtplot2.Rd | 7 +- man/gap.Rd | 2 man/qtl2dplot.Rd | 24 +++++++ man/qtlFinder.Rd |only src/gcontrol_c.c | 3 vignettes/gap.Rmd | 36 ++++++---- 31 files changed, 275 insertions(+), 232 deletions(-)
Title: Calculate Air Travel Emissions
Description: A handy tool to calculate carbon footprints from
air travel based on three-letter International Air Transport Association (IATA) airport codes or latitude and longitude.
footprint first calculates the great-circle distance between departure and arrival
destinations. It then uses the Department of Environment, Food & Rural Affairs (DEFRA)
greenhouse gas conversion factors for business air travel to estimate the carbon footprint.
These conversion factors consider trip length, flight class (e.g. economy, business), and emissions
metric (e.g. carbon dioxide equivalent, methane).
Author: Anthony Schmidt [aut, cre] ,
Kasia Kulma [aut]
Maintainer: Anthony Schmidt <aschmi11@utk.edu>
Diff between footprint versions 0.1 dated 2021-01-06 and 0.2 dated 2024-08-27
footprint-0.1/footprint/R/utils-pipe.R |only footprint-0.1/footprint/man/pipe.Rd |only footprint-0.2/footprint/DESCRIPTION | 15 footprint-0.2/footprint/MD5 | 27 - footprint-0.2/footprint/NAMESPACE | 2 footprint-0.2/footprint/NEWS.md |only footprint-0.2/footprint/R/airport_footprint.R | 29 - footprint-0.2/footprint/R/latlong_footprint.R | 28 - footprint-0.2/footprint/R/sysdata.rda |binary footprint-0.2/footprint/README.md | 63 ++ footprint-0.2/footprint/build/vignette.rds |binary footprint-0.2/footprint/inst/doc/footprint.R | 2 footprint-0.2/footprint/inst/doc/footprint.html | 287 ++++++++----- footprint-0.2/footprint/man/airport_footprint.Rd | 16 footprint-0.2/footprint/man/latlong_footprint.Rd | 12 footprint-0.2/footprint/tests/testthat/test-calculations.R | 20 16 files changed, 335 insertions(+), 166 deletions(-)
Title: Extension of `data.frame`
Description: Fast aggregation of large data (e.g. 100GB in RAM), fast ordered joins, fast add/modify/delete of columns by group using no copies at all, list columns, friendly and fast character-separated-value read/write. Offers a natural and flexible syntax, for faster development.
Author: Tyson Barrett [aut, cre] ,
Matt Dowle [aut],
Arun Srinivasan [aut],
Jan Gorecki [aut],
Michael Chirico [aut] ,
Toby Hocking [aut] ,
Benjamin Schwendinger [aut] ,
Pasha Stetsenko [ctb],
Tom Short [ctb],
Steve Lianoglou [ctb],
Eduard Antonyan [ctb],
Ma [...truncated...]
Maintainer: Tyson Barrett <t.barrett88@gmail.com>
Diff between data.table versions 1.15.4 dated 2024-03-30 and 1.16.0 dated 2024-08-27
data.table-1.15.4/data.table/po |only data.table-1.16.0/data.table/DESCRIPTION | 37 data.table-1.16.0/data.table/MD5 | 311 +++--- data.table-1.16.0/data.table/NAMESPACE | 15 data.table-1.16.0/data.table/NEWS.md | 217 ++++ data.table-1.16.0/data.table/R/AllS4.R | 16 data.table-1.16.0/data.table/R/IDateTime.R | 14 data.table-1.16.0/data.table/R/as.data.table.R | 10 data.table-1.16.0/data.table/R/bmerge.R | 10 data.table-1.16.0/data.table/R/cedta.R | 25 data.table-1.16.0/data.table/R/data.table.R | 509 +++++----- data.table-1.16.0/data.table/R/duplicated.R | 3 data.table-1.16.0/data.table/R/fcast.R | 82 + data.table-1.16.0/data.table/R/fdroplevels.R | 37 data.table-1.16.0/data.table/R/fmelt.R | 34 data.table-1.16.0/data.table/R/foverlaps.R | 11 data.table-1.16.0/data.table/R/fread.R | 72 - data.table-1.16.0/data.table/R/fwrite.R | 13 data.table-1.16.0/data.table/R/merge.R | 18 data.table-1.16.0/data.table/R/onAttach.R | 2 data.table-1.16.0/data.table/R/onLoad.R | 14 data.table-1.16.0/data.table/R/openmp-utils.R | 1 data.table-1.16.0/data.table/R/print.data.table.R | 75 - data.table-1.16.0/data.table/R/programming.R | 2 data.table-1.16.0/data.table/R/setkey.R | 66 - data.table-1.16.0/data.table/R/setops.R | 13 data.table-1.16.0/data.table/R/shift.R | 2 data.table-1.16.0/data.table/R/tables.R | 3 data.table-1.16.0/data.table/R/test.data.table.R | 148 ++ data.table-1.16.0/data.table/R/timetaken.R | 1 data.table-1.16.0/data.table/R/translation.R | 30 data.table-1.16.0/data.table/R/transpose.R | 9 data.table-1.16.0/data.table/R/uniqlist.R | 4 data.table-1.16.0/data.table/R/utils.R | 45 data.table-1.16.0/data.table/R/wrappers.R | 9 data.table-1.16.0/data.table/README.md | 1 data.table-1.16.0/data.table/build/vignette.rds |binary data.table-1.16.0/data.table/configure | 96 + data.table-1.16.0/data.table/inst/cc | 4 data.table-1.16.0/data.table/inst/doc/datatable-benchmarking.Rmd | 20 data.table-1.16.0/data.table/inst/doc/datatable-benchmarking.html | 22 data.table-1.16.0/data.table/inst/doc/datatable-faq.R | 3 data.table-1.16.0/data.table/inst/doc/datatable-faq.Rmd | 5 data.table-1.16.0/data.table/inst/doc/datatable-faq.html | 6 data.table-1.16.0/data.table/inst/doc/datatable-importing.Rmd | 91 + data.table-1.16.0/data.table/inst/doc/datatable-importing.html | 72 + data.table-1.16.0/data.table/inst/doc/datatable-intro.R | 8 data.table-1.16.0/data.table/inst/doc/datatable-intro.Rmd | 141 +- data.table-1.16.0/data.table/inst/doc/datatable-intro.html | 130 +- data.table-1.16.0/data.table/inst/doc/datatable-keys-fast-subset.R | 5 data.table-1.16.0/data.table/inst/doc/datatable-keys-fast-subset.Rmd | 14 data.table-1.16.0/data.table/inst/doc/datatable-keys-fast-subset.html | 20 data.table-1.16.0/data.table/inst/doc/datatable-programming.R | 17 data.table-1.16.0/data.table/inst/doc/datatable-programming.Rmd | 16 data.table-1.16.0/data.table/inst/doc/datatable-programming.html | 12 data.table-1.16.0/data.table/inst/doc/datatable-reference-semantics.R | 8 data.table-1.16.0/data.table/inst/doc/datatable-reference-semantics.Rmd | 20 data.table-1.16.0/data.table/inst/doc/datatable-reference-semantics.html | 21 data.table-1.16.0/data.table/inst/doc/datatable-reshape.R | 2 data.table-1.16.0/data.table/inst/doc/datatable-reshape.Rmd | 6 data.table-1.16.0/data.table/inst/doc/datatable-reshape.html | 8 data.table-1.16.0/data.table/inst/doc/datatable-sd-usage.R | 28 data.table-1.16.0/data.table/inst/doc/datatable-sd-usage.Rmd | 58 - data.table-1.16.0/data.table/inst/doc/datatable-sd-usage.html | 66 - data.table-1.16.0/data.table/inst/doc/datatable-secondary-indices-and-auto-indexing.Rmd | 6 data.table-1.16.0/data.table/inst/doc/datatable-secondary-indices-and-auto-indexing.html | 21 data.table-1.16.0/data.table/inst/tests/S4.Rraw.bz2 |only data.table-1.16.0/data.table/inst/tests/benchmark.Rraw.bz2 |binary data.table-1.16.0/data.table/inst/tests/ch11b.dat.bgz |only data.table-1.16.0/data.table/inst/tests/nafill.Rraw.bz2 |binary data.table-1.16.0/data.table/inst/tests/other.Rraw.bz2 |binary data.table-1.16.0/data.table/inst/tests/programming.Rraw.bz2 |binary data.table-1.16.0/data.table/inst/tests/tests.Rraw.bz2 |binary data.table-1.16.0/data.table/inst/tests/types.Rraw.bz2 |binary data.table-1.16.0/data.table/man/IDateTime.Rd | 13 data.table-1.16.0/data.table/man/assign.Rd | 22 data.table-1.16.0/data.table/man/data.table.Rd | 23 data.table-1.16.0/data.table/man/dcast.data.table.Rd | 14 data.table-1.16.0/data.table/man/duplicated.Rd | 22 data.table-1.16.0/data.table/man/fcase.Rd | 13 data.table-1.16.0/data.table/man/fdroplevels.Rd | 2 data.table-1.16.0/data.table/man/fifelse.Rd | 8 data.table-1.16.0/data.table/man/fread.Rd | 19 data.table-1.16.0/data.table/man/froll.Rd | 2 data.table-1.16.0/data.table/man/fwrite.Rd | 2 data.table-1.16.0/data.table/man/melt.data.table.Rd | 7 data.table-1.16.0/data.table/man/merge.Rd | 10 data.table-1.16.0/data.table/man/openmp-utils.Rd | 2 data.table-1.16.0/data.table/man/patterns.Rd | 6 data.table-1.16.0/data.table/man/print.data.table.Rd | 30 data.table-1.16.0/data.table/man/rbindlist.Rd | 14 data.table-1.16.0/data.table/man/setDT.Rd | 2 data.table-1.16.0/data.table/man/setNumericRounding.Rd | 4 data.table-1.16.0/data.table/man/setattr.Rd | 2 data.table-1.16.0/data.table/man/setkey.Rd | 12 data.table-1.16.0/data.table/man/setorder.Rd | 1 data.table-1.16.0/data.table/man/shift.Rd | 2 data.table-1.16.0/data.table/man/special-symbols.Rd | 6 data.table-1.16.0/data.table/man/split.Rd | 4 data.table-1.16.0/data.table/man/test.Rd | 5 data.table-1.16.0/data.table/man/test.data.table.Rd | 2 data.table-1.16.0/data.table/man/transform.data.table.Rd | 4 data.table-1.16.0/data.table/man/transpose.Rd | 19 data.table-1.16.0/data.table/src/assign.c | 95 + data.table-1.16.0/data.table/src/between.c | 6 data.table-1.16.0/data.table/src/bmerge.c | 60 - data.table-1.16.0/data.table/src/chmatch.c | 9 data.table-1.16.0/data.table/src/cj.c | 2 data.table-1.16.0/data.table/src/coalesce.c | 4 data.table-1.16.0/data.table/src/data.table.h | 37 data.table-1.16.0/data.table/src/dogroups.c | 43 data.table-1.16.0/data.table/src/fastmean.c | 8 data.table-1.16.0/data.table/src/fcast.c | 37 data.table-1.16.0/data.table/src/fifelse.c | 225 ++-- data.table-1.16.0/data.table/src/fmelt.c | 22 data.table-1.16.0/data.table/src/forder.c | 400 +++++++ data.table-1.16.0/data.table/src/frank.c | 4 data.table-1.16.0/data.table/src/fread.c | 139 ++ data.table-1.16.0/data.table/src/fread.h | 13 data.table-1.16.0/data.table/src/freadR.c | 73 - data.table-1.16.0/data.table/src/freadR.h | 4 data.table-1.16.0/data.table/src/frollR.c | 9 data.table-1.16.0/data.table/src/fsort.c | 12 data.table-1.16.0/data.table/src/fwrite.c | 22 data.table-1.16.0/data.table/src/fwrite.h | 4 data.table-1.16.0/data.table/src/fwriteR.c | 7 data.table-1.16.0/data.table/src/gsumm.c | 28 data.table-1.16.0/data.table/src/ijoin.c | 6 data.table-1.16.0/data.table/src/init.c | 38 data.table-1.16.0/data.table/src/myomp.h | 9 data.table-1.16.0/data.table/src/nafill.c | 4 data.table-1.16.0/data.table/src/openmp-utils.c | 2 data.table-1.16.0/data.table/src/rbindlist.c | 80 + data.table-1.16.0/data.table/src/shift.c | 9 data.table-1.16.0/data.table/src/snprintf.c | 6 data.table-1.16.0/data.table/src/subset.c | 2 data.table-1.16.0/data.table/src/transpose.c | 19 data.table-1.16.0/data.table/src/uniqlist.c | 18 data.table-1.16.0/data.table/src/utils.c | 39 data.table-1.16.0/data.table/src/wrappers.c | 4 data.table-1.16.0/data.table/tests/S4.R |only data.table-1.16.0/data.table/tests/autoprint.R | 1 data.table-1.16.0/data.table/tests/autoprint.Rout.save | 7 data.table-1.16.0/data.table/tests/knitr.R | 14 data.table-1.16.0/data.table/tests/knitr.Rout.mock | 8 data.table-1.16.0/data.table/tests/knitr.Rout.save | 24 data.table-1.16.0/data.table/tests/other.R | 18 data.table-1.16.0/data.table/vignettes/datatable-benchmarking.Rmd | 20 data.table-1.16.0/data.table/vignettes/datatable-faq.Rmd | 5 data.table-1.16.0/data.table/vignettes/datatable-importing.Rmd | 91 + data.table-1.16.0/data.table/vignettes/datatable-intro.Rmd | 141 +- data.table-1.16.0/data.table/vignettes/datatable-keys-fast-subset.Rmd | 14 data.table-1.16.0/data.table/vignettes/datatable-programming.Rmd | 16 data.table-1.16.0/data.table/vignettes/datatable-reference-semantics.Rmd | 20 data.table-1.16.0/data.table/vignettes/datatable-reshape.Rmd | 6 data.table-1.16.0/data.table/vignettes/datatable-sd-usage.Rmd | 58 - data.table-1.16.0/data.table/vignettes/datatable-secondary-indices-and-auto-indexing.Rmd | 6 157 files changed, 3353 insertions(+), 1652 deletions(-)
Title: A C++11 Interface for R's C Interface
Description: Provides a header only, C++11 interface to R's C
interface. Compared to other approaches 'cpp11' strives to be safe
against long jumps from the C API as well as C++ exceptions, conform
to normal R function semantics and supports interaction with 'ALTREP'
vectors.
Author: Davis Vaughan [aut, cre] ,
Jim Hester [aut] ,
Romain Francois [aut] ,
Benjamin Kietzman [ctb],
Posit Software, PBC [cph, fnd]
Maintainer: Davis Vaughan <davis@posit.co>
Diff between cpp11 versions 0.4.7 dated 2023-12-02 and 0.5.0 dated 2024-08-27
DESCRIPTION | 8 MD5 | 84 +- NEWS.md | 122 ++ R/utils.R | 2 README.md | 10 build/vignette.rds |binary inst/doc/FAQ.R | 2 inst/doc/FAQ.Rmd | 154 ++- inst/doc/FAQ.html | 545 +++++++------ inst/doc/converting.R | 4 inst/doc/converting.Rmd | 120 +- inst/doc/converting.html | 8 inst/doc/cpp11.Rmd | 274 +++--- inst/doc/cpp11.html | 26 inst/doc/internals.Rmd | 75 + inst/doc/internals.html | 31 inst/doc/motivations.R | 3 inst/doc/motivations.Rmd | 122 +- inst/doc/motivations.html | 1076 +++++++++----------------- inst/include/cpp11/R.hpp | 69 + inst/include/cpp11/data_frame.hpp | 12 inst/include/cpp11/doubles.hpp | 125 --- inst/include/cpp11/environment.hpp | 10 inst/include/cpp11/external_pointer.hpp | 8 inst/include/cpp11/function.hpp | 56 + inst/include/cpp11/integers.hpp | 119 -- inst/include/cpp11/list.hpp | 136 +-- inst/include/cpp11/list_of.hpp | 4 inst/include/cpp11/logicals.hpp | 119 -- inst/include/cpp11/matrix.hpp | 5 inst/include/cpp11/protect.hpp | 156 ++- inst/include/cpp11/r_bool.hpp | 2 inst/include/cpp11/r_vector.hpp | 1312 +++++++++++++++++++++----------- inst/include/cpp11/raws.hpp | 131 --- inst/include/cpp11/sexp.hpp | 36 inst/include/cpp11/strings.hpp | 129 +-- tests/testthat/_snaps/register.md | 106 ++ tests/testthat/test-register.R | 101 -- vignettes/FAQ.Rmd | 154 ++- vignettes/converting.Rmd | 120 +- vignettes/cpp11.Rmd | 274 +++--- vignettes/internals.Rmd | 75 + vignettes/motivations.Rmd | 122 +- 43 files changed, 3136 insertions(+), 2911 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-18 2.1
2021-01-28 1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-11-10 0.2.0
2021-01-16 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-09-10 1.1
2019-04-12 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-21 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-11-10 1.3
2018-07-02 1.2
2018-01-15 1.0.1