Title: Triangle - A 2D Quality Mesh Generator and Delaunay Triangulator
Description: This is a port of Jonathan Shewchuk's Triangle library to
R. From his description: "Triangle generates exact Delaunay
triangulations, constrained Delaunay triangulations, conforming
Delaunay triangulations, Voronoi diagrams, and high-quality
triangular meshes. The latter can be generated with no small or
large angles, and are thus suitable for finite element analysis."
Author: Jonathan Richard Shewchuk [ctb, cph],
David C. Sterratt [cph, aut, cre],
Elias Pipping [ctb],
Michael Sumner [ctb]
Maintainer: David C. Sterratt <david.c.sterratt@ed.ac.uk>
Diff between RTriangle versions 1.6-0.13 dated 2024-01-09 and 1.6-0.14 dated 2024-09-04
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS | 9 +++++++++ src/Makevars | 3 +-- src/RTriangle.h | 1 - src/interface.c | 38 +++++++++++++++++++------------------- src/triangle.c | 4 ++-- 7 files changed, 41 insertions(+), 34 deletions(-)
Title: Sample Size Calculations for Longitudinal Data
Description: Compute power and sample size for linear models of longitudinal
data. Supported models include mixed-effects models and models fit by
generalized least squares and generalized estimating equations. The package
is described in Iddi and Donohue (2022) <DOI:10.32614/RJ-2022-022>. Relevant
formulas are derived by Liu and Liang (1997) <DOI:10.2307/2533554>,
Diggle et al (2002) <ISBN:9780199676750>, and Lu, Luo, and Chen (2008)
<DOI:10.2202/1557-4679.1098>.
Author: Michael C. Donohue [aut, cre],
Steve D. Edland [ctb],
Nan Hu [ctb]
Maintainer: Michael C. Donohue <mdonohue@usc.edu>
Diff between longpower versions 1.0.26 dated 2024-08-27 and 1.0.27 dated 2024-09-04
DESCRIPTION | 8 ++++---- MD5 | 10 ++++++---- NAMESPACE | 1 + R/cprm.power.R |only inst/doc/longpower.html | 6 +++--- man/cprm.power.Rd |only tests/testthat/tests.R | 31 +++++++++++++++++++++++++++++++ 7 files changed, 45 insertions(+), 11 deletions(-)
Title: Estimating the Age using Auricular Surface by DNE
Description: The age is estimated by calculating the Dirichlet Normal Energy (DNE) on the whole auricular surface and the apex of the auricular surface. It involves three estimation methods: principal component discriminant analysis (PCQDA), principal component regression analysis (PCR), and principal component logistic regression analysis (PCLR) methods. The package is created with the data from the Louis Lopes Collection in Lisbon, the 21st Century Identified Human Remains Collection in Coimbra, and the CAL Milano Cemetery Skeletal Collection in Milan.
Author: Jisun Jang [aut, cre]
Maintainer: Jisun Jang <jisun.jang.19@ucl.ac.uk>
Diff between JSDNE versions 4.3.4 dated 2024-07-10 and 4.4.4 dated 2024-09-04
DESCRIPTION | 6 MD5 | 8 - inst/doc/introduction.Rmd | 336 ++++++--------------------------------------- inst/doc/introduction.html | 277 ++++++++++++++++++++++--------------- vignettes/introduction.Rmd | 336 ++++++--------------------------------------- 5 files changed, 268 insertions(+), 695 deletions(-)
Title: A Collection of Methods for Singular Spectrum Analysis
Description: Methods and tools for Singular Spectrum Analysis including decomposition,
forecasting and gap-filling for univariate and multivariate time series.
General description of the methods with many examples can be found in the book
Golyandina (2018, <doi:10.1007/978-3-662-57380-8>).
See 'citation("Rssa")' for details.
Author: Anton Korobeynikov [aut, cre],
Alex Shlemov [aut],
Konstantin Usevich [aut],
Nina Golyandina [aut]
Maintainer: Anton Korobeynikov <anton@korobeynikov.info>
Diff between Rssa versions 1.0.5 dated 2022-08-22 and 1.1 dated 2024-09-04
DESCRIPTION | 27 +++++++++++++--- MD5 | 40 ++++++++++++------------ NAMESPACE | 9 +++++ R/chankel.R | 55 +++++++++++++++++++++++++++++++-- R/common.R | 20 ++++++------ R/forecast.R | 6 +-- R/hankel.R | 34 ++++++++++++++------ R/hbhankel.R | 2 - R/mhankel.R | 3 + R/parest.R | 4 +- R/pssa.R | 20 ++++++++++-- R/ssa.R | 7 ++-- R/toeplitz.R | 18 ++++++++++ R/wossa.R | 18 +++++++++- build/partial.rdb |binary man/Barbara.rd | 38 +++++++++++----------- man/ssa.Rd | 7 +++- src/hankel.c | 18 +++++----- src/hbhankel.c | 90 +++++++++++++++++++++++++++--------------------------- src/masks.c | 6 +-- src/toeplitz.c | 8 ++-- 21 files changed, 286 insertions(+), 144 deletions(-)
Title: Multivariate Normal Probabilities using Vecchia Approximation
Description: Under a different representation of the multivariate normal (MVN) probability, we can use the Vecchia approximation to sample the integrand at a linear complexity with respect to n. Additionally, both the SOV algorithm from Genz (92) and the exponential-tilting method from Botev (2017) can be adapted to linear complexity. The reference for the method implemented in this package is Jian Cao and Matthias Katzfuss (2024) "Linear-Cost Vecchia Approximation of Multivariate Normal Probabilities" <doi:10.48550/arXiv.2311.09426>. Two major references for the development of our method are Alan Genz (1992) "Numerical Computation of Multivariate Normal Probabilities" <doi:10.1080/10618600.1992.10477010> and Z. I. Botev (2017) "The Normal Law Under Linear Restrictions: Simulation and Estimation via Minimax Tilting" <doi:10.48550/arXiv.1603.04166>.
Author: Jian Cao [aut, cre],
Matthias Katzfuss [aut]
Maintainer: Jian Cao <jcao2416@gmail.com>
Diff between VeccTMVN versions 1.1.0 dated 2024-08-16 and 1.1.1 dated 2024-09-04
DESCRIPTION | 8 ++++---- MD5 | 8 ++++++-- NAMESPACE | 3 +++ R/pmvn_MLMC.R |only R/pmvt_MLMC.R |only man/pmvn_MLMC.Rd |only man/pmvt_MLMC.Rd |only 7 files changed, 13 insertions(+), 6 deletions(-)
Title: Discrete Nonlinear Filtering for Stochastic Volatility Models
Description: Implements the discrete nonlinear filter (DNF) of Kitagawa (1987) <doi:10.1080/01621459.1987.10478534> to a wide class of stochastic volatility (SV) models with return and volatility jumps following the work of Bégin and Boudreault (2021) <doi:10.1080/10618600.2020.1840995>. Offers several built-in SV models and a flexible framework for users to create customized models by specifying drift and diffusion functions along with a jump arrival distribution for the return and volatility dynamics. Allows for the estimation of factor models with stochastic volatility (e.g., heteroskedastic volatility CAPM) by incorporating expected return predictors. `Includes functions to compute likelihood evaluations, filtering and prediction distribution estimates, maximum likelihood parameter estimates, to simulate data from built-in and custom SV models with jumps, and to forecast future returns and volatility values using Monte Carlo simulation from a given SV model.
Author: Louis Arsenault-Mahjoubi [aut, cre],
Jean-Francois Begin [aut],
Mathieu Boudreault [aut]
Maintainer: Louis Arsenault-Mahjoubi <larsenau@sfu.ca>
Diff between SVDNF versions 0.1.8 dated 2023-08-08 and 0.1.9 dated 2024-09-04
DESCRIPTION | 13 - MD5 | 34 ++-- NAMESPACE | 14 + R/DNF.R | 71 +++++++- R/DNFOptim.R | 96 +++++++++-- R/Methods.R | 370 ++++++++++++++++++++++++++------------------ R/dynamicsSVM.R | 66 ++++++- R/extractVolPerc.R |only R/gridMaker.R | 19 ++ R/initGuess.R |only R/pars.R |only inst |only man/DNF.dynamicsSVM.Rd | 5 man/DNFOptim.Rd | 17 +- man/dynamicsSVM.Rd | 5 man/extractVolPerc.Rd |only man/modelSim.dynamicsSVM.Rd | 2 man/pars.Rd |only man/plot.SVDNF.Rd | 18 +- man/predict.DNFOptim.Rd | 23 +- man/summary.DNFOptim.Rd | 12 - 21 files changed, 525 insertions(+), 240 deletions(-)
Title: Classes and Methods for Spatio-Temporal Data
Description: Classes and methods for spatio-temporal data, including space-time regular lattices, sparse lattices, irregular data, and trajectories; utility functions for plotting data as map sequences (lattice or animation) or multiple time series; methods for spatial and temporal selection and subsetting, as well as for spatial/temporal/spatio-temporal matching or aggregation, retrieving coordinates, print, summary, etc.
Author: Edzer Pebesma [aut, cre] ,
Benedikt Graeler [ctb],
Tom Gottfried [ctb],
Robert J. Hijmans [ctb]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between spacetime versions 1.3-1 dated 2023-12-05 and 1.3-2 dated 2024-09-04
DESCRIPTION | 8 ++++---- MD5 | 32 ++++++++++++++++---------------- build/vignette.rds |binary data/air.rda |binary data/fires.rda |binary inst/doc/jss816.pdf |binary inst/doc/sto.pdf |binary inst/doc/stpg.pdf |binary inst/doc/stsubs.pdf |binary man/STFDF-class.Rd | 4 ++-- man/STIDF-class.Rd | 4 ++-- man/STSDF-class.Rd | 4 ++-- man/eof.Rd | 2 +- man/stconstruct.Rd | 6 +++--- tests/basic.Rout.save | 18 +++++++++--------- tests/stconstruct.R | 4 +++- tests/stconstruct.Rout.save | 22 ++++++++-------------- 17 files changed, 50 insertions(+), 54 deletions(-)
Title: Design Clinical Trials using Sequential Predictive Probability
Monitoring
Description: Functions are available to calibrate designs over a range of posterior and predictive thresholds, to plot the various design options, and to obtain the operating characteristics of optimal accuracy and optimal efficiency designs.
Author: Emily C. Zabor [aut, cre] ,
Brian P. Hobbs [aut],
Michael J. Kane [aut]
Maintainer: Emily C. Zabor <zabore2@ccf.org>
Diff between ppseq versions 0.2.4 dated 2024-04-04 and 0.2.5 dated 2024-09-04
ppseq-0.2.4/ppseq/tests/spelling.R |only ppseq-0.2.4/ppseq/tests/spelling.Rout.save |only ppseq-0.2.5/ppseq/DESCRIPTION | 11 ppseq-0.2.5/ppseq/MD5 | 12 ppseq-0.2.5/ppseq/NEWS.md | 4 ppseq-0.2.5/ppseq/build/vignette.rds |binary ppseq-0.2.5/ppseq/inst/doc/one_sample_expansion.html | 267 ++++++++++-------- ppseq-0.2.5/ppseq/inst/doc/two_sample_randomized.html | 267 ++++++++++-------- 8 files changed, 314 insertions(+), 247 deletions(-)
Title: Modelling Phylogenetic Signals using Eigenvector Maps
Description: Computational tools to represent phylogenetic signals using adapted
eigenvector maps.
Author: Guillaume Guenard [aut, cre] ,
Pierre Legendre [ctb]
Maintainer: Guillaume Guenard <guillaume.guenard@umontreal.ca>
Diff between MPSEM versions 0.4-1 dated 2022-01-13 and 0.4-4 dated 2024-09-04
MPSEM-0.4-1/MPSEM/inst/doc/PEM_with_MPSEM.R |only MPSEM-0.4-1/MPSEM/inst/doc/PEM_with_MPSEM.Rnw |only MPSEM-0.4-1/MPSEM/inst/doc/PEM_with_MPSEM.pdf |only MPSEM-0.4-1/MPSEM/vignettes/PEM_with_MPSEM.Rnw |only MPSEM-0.4-1/MPSEM/vignettes/PEM_with_MPSEM.lyx |only MPSEM-0.4-4/MPSEM/DESCRIPTION | 37 +- MPSEM-0.4-4/MPSEM/MD5 | 48 +-- MPSEM-0.4-4/MPSEM/R/MPSEM-package.R | 54 +-- MPSEM-0.4-4/MPSEM/R/PEM-class.R | 53 ++- MPSEM-0.4-4/MPSEM/R/PEM-functions.R | 370 ++++++++++++++----------- MPSEM-0.4-4/MPSEM/R/graph-class.R | 20 - MPSEM-0.4-4/MPSEM/R/graph-functions.R | 87 +++-- MPSEM-0.4-4/MPSEM/R/lm-utils.R | 31 +- MPSEM-0.4-4/MPSEM/R/trait-simulator.R | 80 +++-- MPSEM-0.4-4/MPSEM/build/partial.rdb |binary MPSEM-0.4-4/MPSEM/build/vignette.rds |binary MPSEM-0.4-4/MPSEM/inst/CITATION |only MPSEM-0.4-4/MPSEM/inst/doc/REM_with_MPSEM.R |only MPSEM-0.4-4/MPSEM/inst/doc/REM_with_MPSEM.Rmd |only MPSEM-0.4-4/MPSEM/inst/doc/REM_with_MPSEM.html |only MPSEM-0.4-4/MPSEM/man/MPSEM-package.Rd | 49 +-- MPSEM-0.4-4/MPSEM/man/PEM-class.Rd | 46 +-- MPSEM-0.4-4/MPSEM/man/PEM-functions.Rd | 262 +++++++++++------ MPSEM-0.4-4/MPSEM/man/graph-class.Rd | 19 - MPSEM-0.4-4/MPSEM/man/graph-functions.Rd | 77 +++-- MPSEM-0.4-4/MPSEM/man/lm-utils.Rd | 36 +- MPSEM-0.4-4/MPSEM/man/trait-simulator.Rd | 82 +++-- MPSEM-0.4-4/MPSEM/src/MPSEM.c | 131 ++++---- MPSEM-0.4-4/MPSEM/vignettes/PEM_with_MPSEM.bib | 97 ++++-- MPSEM-0.4-4/MPSEM/vignettes/REM_with_MPSEM.Rmd |only 30 files changed, 945 insertions(+), 634 deletions(-)
Title: Nonparametric Methods for Generating High Quality Comparative
Effectiveness Evidence
Description: Implements novel nonparametric approaches to address
biases and confounding when comparing treatments or exposures in
observational studies of outcomes. While designed and appropriate for use
in studies involving medicine and the life sciences, the package can be
used in other situations involving outcomes with multiple confounders.
The package implements a family of methods for non-parametric bias correction
when comparing treatments in observational studies, including survival
analysis settings, where competing risks and/or censoring may be present.
The approach extends to bias-corrected personalized predictions of treatment
outcome differences, and analysis of heterogeneity of treatment effect-sizes
across patient subgroups. For further details, please see:
Lauve NR, Nelson SJ, Young SS, Obenchain RL, Lambert CG. LocalControl:
An R Package for Comparative Safety and Effectiveness Research.
Journal of Statistical Software. 2020. p. 1–32. Available from <doi:10.18637/jss.v096.i04&g [...truncated...]
Author: Nicolas R. Lauve [aut] ,
Stuart J. Nelson [aut] ,
S. Stanley Young [aut] ,
Robert L. Obenchain [aut] ,
Melania Pintilie [ctb],
Martin Kutz [ctb],
Christophe G. Lambert [aut, cre]
Maintainer: Christophe G. Lambert <cglambert@salud.unm.edu>
Diff between LocalControl versions 1.1.3 dated 2022-05-20 and 1.1.4 dated 2024-09-04
DESCRIPTION | 22 +- MD5 | 64 +++---- NEWS.md | 8 R/clusteringLC.R | 235 +++++++++++++------------- R/deprecatedLC.R | 1 R/localControl.R | 28 +-- README.md | 22 +- build/vignette.rds |binary inst/doc/LocalControl-jss-2020.R | 53 ++++- inst/doc/LocalControl-jss-2020.Rnw | 59 ++++-- inst/doc/LocalControl-jss-2020.pdf |binary man/LocalControl-deprecated.Rd | 1 man/LocalControl.Rd | 14 - man/LocalControlCompetingRisksConfidence.Rd | 2 man/LocalControlNearestNeighborsConfidence.Rd | 4 man/SPSbalan.Rd | 11 - man/SPSloess.Rd | 18 - man/SPSlogit.Rd | 18 - man/SPSnbins.Rd | 20 +- man/SPSoutco.Rd | 32 +-- man/UPSLTDdist.Rd | 45 ++++ man/UPSaccum.Rd | 20 +- man/UPSaltdd.Rd | 32 +-- man/UPSgraph.Rd | 22 +- man/UPShclus.Rd | 20 +- man/UPSivadj.Rd | 16 - man/UPSnnltd.Rd | 14 - man/plot.LocalControlCR.Rd | 38 +++- man/plot.LocalControlCS.Rd | 43 ++++ src/LocalControl.cpp | 1 src/Makevars | 1 vignettes/LocalControl-jss-2020.Rnw | 59 ++++-- vignettes/LocalControl.bib | 8 33 files changed, 557 insertions(+), 374 deletions(-)
Title: American Soccer Analysis API Client
Description: Provides a wrapper around the same API <https://app.americansocceranalysis.com/api/v1/__docs__/>
that powers the American Soccer Analysis app.
Author: Tyler Richardett [aut, cre],
American Soccer Analysis [cph]
Maintainer: Tyler Richardett <tyler.richardett@gmail.com>
Diff between itscalledsoccer versions 0.2.4 dated 2023-10-07 and 0.3.0 dated 2024-09-04
DESCRIPTION | 8 +++--- MD5 | 8 +++--- NEWS.md | 8 ++++++ R/client.R | 2 - README.md | 70 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++---- 5 files changed, 83 insertions(+), 13 deletions(-)
More information about itscalledsoccer at CRAN
Permanent link
Title: Signal Processing
Description: R implementation of the 'Octave' package 'signal', containing
a variety of signal processing tools, such as signal generation and
measurement, correlation and convolution, filtering, filter design,
filter analysis and conversion, power spectrum analysis, system
identification, decimation and sample rate change, and windowing.
Author: Geert van Boxtel [aut, cre] ,
Tom Short [aut] ,
Paul Kienzle [aut] ,
Ben Abbott [ctb],
Juan Aguado [ctb],
Muthiah Annamalai [ctb],
Leonardo Araujo [ctb],
William Asquith [ctb],
David Bateman [ctb],
David Billinghurst [ctb],
Juan Pablo Carbajal [ctb], [...truncated...]
Maintainer: Geert van Boxtel <G.J.M.vanBoxtel@gmail.com>
Diff between gsignal versions 0.3-5 dated 2022-05-15 and 0.3-6 dated 2024-09-04
gsignal-0.3-5/gsignal/R/freqs_plot.R |only gsignal-0.3-5/gsignal/man/freqs_plot.Rd |only gsignal-0.3-6/gsignal/DESCRIPTION | 12 gsignal-0.3-6/gsignal/MD5 | 92 - gsignal-0.3-6/gsignal/NAMESPACE | 4 gsignal-0.3-6/gsignal/NEWS.md | 113 - gsignal-0.3-6/gsignal/R/besselap.R | 2 gsignal-0.3-6/gsignal/R/dctmtx.R | 10 gsignal-0.3-6/gsignal/R/decimate.R | 7 gsignal-0.3-6/gsignal/R/diric.R | 2 gsignal-0.3-6/gsignal/R/filter_zi.R | 6 gsignal-0.3-6/gsignal/R/filtfilt.R | 6 gsignal-0.3-6/gsignal/R/findpeaks.R | 3 gsignal-0.3-6/gsignal/R/fir1.R | 13 gsignal-0.3-6/gsignal/R/firls.R | 7 gsignal-0.3-6/gsignal/R/freqs.R | 109 + gsignal-0.3-6/gsignal/R/freqz.R | 78 gsignal-0.3-6/gsignal/R/gsignal-internal.R | 2 gsignal-0.3-6/gsignal/R/hamming.R | 5 gsignal-0.3-6/gsignal/R/poly.R | 6 gsignal-0.3-6/gsignal/R/residuez.R | 16 gsignal-0.3-6/gsignal/R/stft.R | 6 gsignal-0.3-6/gsignal/README.md | 9 gsignal-0.3-6/gsignal/build/partial.rdb |binary gsignal-0.3-6/gsignal/build/vignette.rds |binary gsignal-0.3-6/gsignal/inst/CITATION | 17 gsignal-0.3-6/gsignal/inst/doc/gsignal.R | 10 gsignal-0.3-6/gsignal/inst/doc/gsignal.Rmd | 8 gsignal-0.3-6/gsignal/inst/doc/gsignal.html | 837 +++++----- gsignal-0.3-6/gsignal/man/besselap.Rd | 2 gsignal-0.3-6/gsignal/man/dctmtx.Rd | 10 gsignal-0.3-6/gsignal/man/decimate.Rd | 10 gsignal-0.3-6/gsignal/man/diric.Rd | 2 gsignal-0.3-6/gsignal/man/filter.Rd | 5 gsignal-0.3-6/gsignal/man/filter_zi.Rd | 3 gsignal-0.3-6/gsignal/man/firls.Rd | 9 gsignal-0.3-6/gsignal/man/freqs.Rd | 30 gsignal-0.3-6/gsignal/man/poly.Rd | 6 gsignal-0.3-6/gsignal/man/stft.Rd | 4 gsignal-0.3-6/gsignal/tests/testthat/Rplots.pdf |only gsignal-0.3-6/gsignal/tests/testthat/test_Filter_Analysis_Functions.R | 31 gsignal-0.3-6/gsignal/tests/testthat/test_Filter_Conversion_Functions.R | 12 gsignal-0.3-6/gsignal/tests/testthat/test_IIR_Filter_Design_Functions.R | 10 gsignal-0.3-6/gsignal/tests/testthat/test_Power_Spectrum_Analysis_Functions.R | 16 gsignal-0.3-6/gsignal/tests/testthat/test_Sample_Rate_Change_Functions.R | 14 gsignal-0.3-6/gsignal/tests/testthat/test_Transforms_Functions.R | 11 gsignal-0.3-6/gsignal/tests/testthat/test_Window_Functions.R | 2 gsignal-0.3-6/gsignal/tests/testthat/testthat-problems.rds |only gsignal-0.3-6/gsignal/vignettes/gsignal.Rmd | 8 49 files changed, 904 insertions(+), 661 deletions(-)
Title: Methods for Analysing 'EQ-5D' Data and Calculating 'EQ-5D' Index
Scores
Description: EQ-5D is a popular health related quality of life instrument used
in the clinical and economic evaluation of health care. Developed by the
EuroQol group <https://euroqol.org/>, the instrument consists of two
components: health state description and evaluation. For the description
component a subject self-rates their health in terms of five dimensions;
mobility, self-care, usual activities, pain/discomfort, and
anxiety/depression using either a three-level (EQ-5D-3L,
<https://euroqol.org/information-and-support/euroqol-instruments/eq-5d-3l/>) or a five-level
(EQ-5D-5L, <https://euroqol.org/information-and-support/euroqol-instruments/eq-5d-5l/>)
scale. Frequently the scores on these five dimensions are converted to a
single utility index using country specific value sets, which can be used
in the clinical and economic evaluation of health care as well as in
population health surveys. The eq5d package provides methods to calculate
index scores from a subject's dimension [...truncated...]
Author: Fraser Morton [aut, cre],
Jagtar Singh Nijjar [aut]
Maintainer: Fraser Morton <fraser.morton@glasgow.ac.uk>
Diff between eq5d versions 0.15.3 dated 2024-04-29 and 0.15.4 dated 2024-09-04
eq5d-0.15.3/eq5d/R/eq5dy.R |only eq5d-0.15.3/eq5d/man/Y.Rd |only eq5d-0.15.3/eq5d/tests/testthat/test-eq5dy.R |only eq5d-0.15.4/eq5d/DESCRIPTION | 31 ++++---- eq5d-0.15.4/eq5d/MD5 | 95 ++++++++++++------------- eq5d-0.15.4/eq5d/NAMESPACE | 3 eq5d-0.15.4/eq5d/NEWS.md | 14 +++ eq5d-0.15.4/eq5d/R/data.R | 18 +++- eq5d-0.15.4/eq5d/R/eq5d.R | 62 +++++++++++----- eq5d-0.15.4/eq5d/R/eq5dcf.R | 6 + eq5d-0.15.4/eq5d/R/eq5dds.R | 9 +- eq5d-0.15.4/eq5d/R/eq5dlfs.R | 11 ++ eq5d-0.15.4/eq5d/R/eq5dlss.R | 9 +- eq5d-0.15.4/eq5d/R/eq5dmap.R | 10 +- eq5d-0.15.4/eq5d/R/eq5dy3l.R |only eq5d-0.15.4/eq5d/R/eqhpg.R | 9 +- eq5d-0.15.4/eq5d/R/eqhsdi.R | 9 +- eq5d-0.15.4/eq5d/R/eqpchc.R | 9 +- eq5d-0.15.4/eq5d/R/eqshannon.R | 9 +- eq5d-0.15.4/eq5d/R/helpers.R | 22 +++-- eq5d-0.15.4/eq5d/R/sysdata.rda |binary eq5d-0.15.4/eq5d/README.md | 26 +++--- eq5d-0.15.4/eq5d/build/partial.rdb |binary eq5d-0.15.4/eq5d/build/vignette.rds |binary eq5d-0.15.4/eq5d/inst/doc/eq5d.R | 2 eq5d-0.15.4/eq5d/inst/doc/eq5d.Rmd | 2 eq5d-0.15.4/eq5d/inst/doc/eq5d.html | 47 ++++++------ eq5d-0.15.4/eq5d/inst/shiny/server.R | 8 +- eq5d-0.15.4/eq5d/man/CW.Rd | 7 + eq5d-0.15.4/eq5d/man/TTO.Rd | 3 eq5d-0.15.4/eq5d/man/VT.Rd | 5 - eq5d-0.15.4/eq5d/man/Y3L.Rd |only eq5d-0.15.4/eq5d/man/eq5d-package.Rd | 3 eq5d-0.15.4/eq5d/man/eq5d.Rd | 9 +- eq5d-0.15.4/eq5d/man/eq5dmap.Rd | 5 + eq5d-0.15.4/eq5d/man/eq5dy.Rd | 10 +- eq5d-0.15.4/eq5d/man/eq5dy3l.Rd |only eq5d-0.15.4/eq5d/man/get_all_health_states.Rd | 4 - eq5d-0.15.4/eq5d/man/lfs.Rd | 2 eq5d-0.15.4/eq5d/man/valuesets.Rd | 4 - eq5d-0.15.4/eq5d/tests/testthat/test-eq5d.R | 5 - eq5d-0.15.4/eq5d/tests/testthat/test-eq5d3l.R | 6 + eq5d-0.15.4/eq5d/tests/testthat/test-eq5d5l.R | 8 ++ eq5d-0.15.4/eq5d/tests/testthat/test-eq5dcf.R | 4 - eq5d-0.15.4/eq5d/tests/testthat/test-eq5dcw.R | 9 ++ eq5d-0.15.4/eq5d/tests/testthat/test-eq5dds.R | 4 - eq5d-0.15.4/eq5d/tests/testthat/test-eq5dlfs.R | 4 - eq5d-0.15.4/eq5d/tests/testthat/test-eq5dlss.R | 4 - eq5d-0.15.4/eq5d/tests/testthat/test-eq5dmap.R | 4 + eq5d-0.15.4/eq5d/tests/testthat/test-eq5dy3l.R |only eq5d-0.15.4/eq5d/tests/testthat/test-eqpchc.R | 2 eq5d-0.15.4/eq5d/vignettes/eq5d.Rmd | 2 52 files changed, 327 insertions(+), 188 deletions(-)
Title: (Robust) Canonical Correlation Analysis via Projection Pursuit
Description: Canonical correlation analysis and maximum correlation via
projection pursuit, as well as fast implementations of correlation
estimators, with a focus on robust and nonparametric methods.
Author: Andreas Alfons [aut, cre] ,
David Simcha [ctb] ) implementation of Kendall correlation)
Maintainer: Andreas Alfons <alfons@ese.eur.nl>
Diff between ccaPP versions 0.3.3 dated 2019-12-09 and 0.3.4 dated 2024-09-04
DESCRIPTION | 26 ++++++++++++------- MD5 | 37 +++++++++++++-------------- NEWS | 15 ++++++++++- R/maxCor.R | 4 +- README.md |only build/partial.rdb |binary build/vignette.rds |binary data/diabetes.RData |binary inst/CITATION | 64 ++++++++++++++++++++++++----------------------- inst/doc/ccaPP-intro.R | 20 +++++++------- inst/doc/ccaPP-intro.pdf |binary man/ccaGrid.Rd | 39 ++++++++++++++++++++++------ man/ccaPP-package.Rd | 10 +++---- man/ccaProj.Rd | 27 +++++++++++++++---- man/corFunctions.Rd | 9 +++++- man/maxCorGrid.Rd | 23 ++++++++++++---- man/maxCorProj.Rd | 13 +++++++-- man/permTest.Rd | 13 ++++++++- src/cca.cpp | 42 +++++++++++++++--------------- src/cor.cpp | 2 - 20 files changed, 219 insertions(+), 125 deletions(-)
Title: Bayesian Latent Variable Analysis
Description: Fit a variety of Bayesian latent variable models, including confirmatory
factor analysis, structural equation models, and latent growth curve models. References: Merkle & Rosseel (2018) <doi:10.18637/jss.v085.i04>; Merkle et al. (2021) <doi:10.18637/jss.v100.i06>.
Author: Edgar Merkle [aut, cre] ,
Yves Rosseel [aut],
Ben Goodrich [aut],
Mauricio Garnier-Villarreal [ctb]
,
Terrence D. Jorgensen [ctb] ,
Huub Hoofs [ctb] ,
Rens van de Schoot [ctb] ,
Andrew Johnson [ctb] ,
Matthew Emery [ctb]
Maintainer: Edgar Merkle <merklee@missouri.edu>
Diff between blavaan versions 0.5-5 dated 2024-06-09 and 0.5-6 dated 2024-09-04
DESCRIPTION | 8 ++++---- MD5 | 34 +++++++++++++++++----------------- NEWS.md | 11 ++++++++++- R/blav_object_methods.R | 18 +++++++++++++----- R/blav_predict.R | 5 +++++ R/blav_utils.R | 26 +++++++++++++++++++++++++- R/blavaan.R | 24 ++++++++++++++++++++---- R/lav_export_mcmc.R | 2 +- R/lav_export_stanmarg.R | 10 +--------- inst/stan/stanmarg.stan | 6 +++--- man/bcfa.Rd | 8 ++++---- man/bgrowth.Rd | 6 +++--- man/blavFitIndices.Rd | 2 +- man/blavInspect.Rd | 6 +++--- man/blavaan-class.Rd | 5 ++--- man/blavaan.Rd | 6 +++--- man/bsem.Rd | 8 ++++---- man/ppmc.Rd | 4 ++-- 18 files changed, 121 insertions(+), 68 deletions(-)
Title: Google Traffic
Description: Create geographically referenced traffic data from the Google Maps JavaScript API <https://developers.google.com/maps/documentation/javascript/examples/layer-traffic>.
Author: Robert Marty [aut, cre]
Maintainer: Robert Marty <rmarty@worldbank.org>
Diff between googletraffic versions 0.1.6 dated 2024-06-16 and 0.1.7 dated 2024-09-04
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/gt_load_png_as_traffic_raster.R | 4 ++-- README.md | 2 +- 4 files changed, 9 insertions(+), 9 deletions(-)
Title: Load 'Overture' Datasets as 'dbplyr' and 'sf'-Ready Data Frames
Description: An integrated R interface to the 'Overture' API
(<https://docs.overturemaps.org/>). Allows R users to return 'Overture' data as
'dbplyr' data frames or materialized 'sf' spatial data frames.
Author: Arthur Gailes [aut, cre, cph]
Maintainer: Arthur Gailes <agailes1@gmail.com>
Diff between overtureR versions 0.2.2 dated 2024-08-21 and 0.2.3 dated 2024-09-04
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/open_curtain.R | 4 ++-- man/open_curtain.Rd | 4 ++-- 4 files changed, 10 insertions(+), 10 deletions(-)
Title: Accurate Timing Functions
Description: Provides infrastructure to accurately measure and compare
the execution time of R expressions.
Author: Olaf Mersmann [aut],
Claudia Beleites [ctb],
Rainer Hurling [ctb],
Ari Friedman [ctb],
Joshua M. Ulrich [cre]
Maintainer: Joshua M. Ulrich <josh.m.ulrich@gmail.com>
Diff between microbenchmark versions 1.4.10 dated 2023-04-28 and 1.5.0 dated 2024-09-04
microbenchmark-1.4.10/microbenchmark/man/normalize_unit.Rd |only microbenchmark-1.5.0/microbenchmark/DESCRIPTION | 8 microbenchmark-1.5.0/microbenchmark/MD5 | 37 microbenchmark-1.5.0/microbenchmark/NAMESPACE | 7 microbenchmark-1.5.0/microbenchmark/R/autoplot.R | 50 microbenchmark-1.5.0/microbenchmark/R/boxplot.R | 11 microbenchmark-1.5.0/microbenchmark/R/internal.R | 47 microbenchmark-1.5.0/microbenchmark/R/microbenchmark.R | 10 microbenchmark-1.5.0/microbenchmark/R/print.R | 5 microbenchmark-1.5.0/microbenchmark/R/rbind.R |only microbenchmark-1.5.0/microbenchmark/R/summary.R | 13 microbenchmark-1.5.0/microbenchmark/configure | 2560 +++++----- microbenchmark-1.5.0/microbenchmark/configure.ac | 30 microbenchmark-1.5.0/microbenchmark/inst/unitTests/runit_test_regression.R | 4 microbenchmark-1.5.0/microbenchmark/man/autoplot.microbenchmark.Rd | 39 microbenchmark-1.5.0/microbenchmark/man/boxplot.microbenchmark.Rd | 13 microbenchmark-1.5.0/microbenchmark/man/convert_to_unit.Rd | 7 microbenchmark-1.5.0/microbenchmark/man/determine_unit.Rd |only microbenchmark-1.5.0/microbenchmark/man/microbenchmark.Rd | 12 microbenchmark-1.5.0/microbenchmark/man/summary.microbenchmark.Rd | 2 microbenchmark-1.5.0/microbenchmark/src/config.h.in | 13 21 files changed, 1479 insertions(+), 1389 deletions(-)
More information about microbenchmark at CRAN
Permanent link
Title: Interactive Maps with 'Mapbox GL JS' and 'MapLibre GL JS' in R
Description: Provides an interface to the 'Mapbox GL JS' (<https://docs.mapbox.com/mapbox-gl-js/guides>)
and the 'MapLibre GL JS' (<https://maplibre.org/maplibre-gl-js/docs/>) interactive mapping libraries to help users
create custom interactive maps in R. Users can create interactive globe visualizations; layer 'sf' objects to create
filled maps, circle maps, 'heatmaps', and three-dimensional graphics; and customize map styles and views. The package
also includes utilities to use 'Mapbox' and 'MapLibre' maps in 'Shiny' web applications.
Author: Kyle Walker [aut, cre]
Maintainer: Kyle Walker <kyle@walker-data.com>
Diff between mapgl versions 0.1.2 dated 2024-08-17 and 0.1.3 dated 2024-09-04
DESCRIPTION | 14 MD5 | 58 NAMESPACE | 3 NEWS.md | 8 R/controls.R | 387 +++- R/layers.R | 1204 ++++++++----- R/plugins.R | 159 - R/style_helpers.R | 5 inst/htmlwidgets/lib/freehand-mode |only inst/htmlwidgets/lib/maplibre-gl/maplibre-gl.js | 8 inst/htmlwidgets/mapboxgl.js | 2088 ++++++++++++++--------- inst/htmlwidgets/mapboxgl.yaml | 17 inst/htmlwidgets/mapboxgl_compare.yaml | 6 inst/htmlwidgets/maplibregl.js | 2094 +++++++++++++++--------- inst/htmlwidgets/maplibregl.yaml | 15 man/add_circle_layer.Rd | 98 - man/add_draw_control.Rd | 16 man/add_fill_extrusion_layer.Rd | 63 man/add_fill_layer.Rd | 39 man/add_fullscreen_control.Rd | 10 man/add_geocoder_control.Rd |only man/add_heatmap_layer.Rd | 65 man/add_layer.Rd | 37 man/add_layers_control.Rd | 27 man/add_line_layer.Rd | 21 man/add_navigation_control.Rd | 2 man/add_raster_layer.Rd | 36 man/add_reset_control.Rd |only man/add_scale_control.Rd | 2 man/add_symbol_layer.Rd | 60 man/cluster_options.Rd |only man/get_drawn_features.Rd | 32 32 files changed, 4115 insertions(+), 2459 deletions(-)
Title: Classes and Methods for Trajectory Data
Description: Classes and methods for trajectory data, with support for nesting individual Track objects in track sets (Tracks) and track sets for different entities in collections of Tracks. Methods include selection, generalization, aggregation, intersection, simulation, and plotting.
Author: Edzer Pebesma [aut, cre] ,
Benedikt Klus [aut],
Benedikt Graeler [ctb],
Nikolai Gorte [ctb],
Mehdi Moradi [aut]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between trajectories versions 0.2-8 dated 2023-11-27 and 0.2-9 dated 2024-09-04
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- build/vignette.rds |binary inst/doc/article.pdf |binary man/Track-class.Rd | 4 ++-- man/difftrack-class.Rd | 2 +- man/generalize.Rd | 2 +- man/stbox.Rd | 3 +-- tests/tracks.R | 2 ++ tests/tracks.Rout.save | 12 +++++++----- 10 files changed, 26 insertions(+), 23 deletions(-)
Title: Post-Estimation Functions for Generalized Linear Mixed Models
Description: Several functions for working with mixed effects regression models for limited dependent variables. The functions facilitate post-estimation of model predictions or margins, and comparisons between model predictions for assessing or probing moderation. Additional helper functions facilitate model comparisons and implements simulation-based inference for model predictions of alternative-specific outcome models. See also, Melamed and Doan (2024, ISBN: 978-1032509518).
Author: David Melamed [aut, cre]
Maintainer: David Melamed <dmmelamed@gmail.com>
Diff between catregs versions 0.2.1 dated 2024-07-11 and 1.2.2 dated 2024-09-04
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/functions.R | 17 ++++++++++++----- 3 files changed, 17 insertions(+), 10 deletions(-)
Title: Bayesian Additive Regression Trees with Stan-Sampled Parametric
Extensions
Description: Fits semiparametric linear and multilevel models with non-parametric additive Bayesian additive regression tree (BART; Chipman, George, and McCulloch (2010) <doi:10.1214/09-AOAS285>) components and Stan (Stan Development Team (2021) <https://mc-stan.org/>) sampled parametric ones. Multilevel models can be expressed using 'lme4' syntax (Bates, Maechler, Bolker, and Walker (2015) <doi:10.18637/jss.v067.i01>).
Author: Vincent Dorie [aut, cre] ,
Ben Goodrich [ctb] ,
Jonah Gabry [ctb] ,
Imad Ali [ctb] ,
Sam Brilleman [ctb] ,
Paul-Christian Burkner [ctb] ,
Joshua Pritikin [ctb] ,
Andrew Gelman [ctb] ,
Bob Carpenter [ctb] ,
Matt Hoffman [ctb] ,
Daniel Lee [ctb] ,
Mich [...truncated...]
Maintainer: Vincent Dorie <vdorie@gmail.com>
Diff between stan4bart versions 0.0-8 dated 2024-05-17 and 0.0-10 dated 2024-09-04
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- man/generics.Rd | 2 +- man/stan4bart.Rd | 10 +++++----- src/include/stan/model/model_base_crtp.hpp | 4 ++-- 5 files changed, 16 insertions(+), 16 deletions(-)
Title: Linear Regression Stability to Significance Reversal
Description: Tests linear regressions for significance reversal through leave-one(multiple)-out.
Author: Andrej-Nikolai Spiess [aut, cre],
Michal Burdukiewicz [aut],
Stefan Roediger [aut]
Maintainer: Andrej-Nikolai Spiess <draspiess@gmail.com>
Diff between reverseR versions 0.1 dated 2019-04-24 and 0.2 dated 2024-09-04
reverseR-0.1/reverseR/R/lmMult.R |only reverseR-0.1/reverseR/R/lmThresh.R |only reverseR-0.1/reverseR/R/shinyInfl.R |only reverseR-0.1/reverseR/R/simInfl.R |only reverseR-0.1/reverseR/R/stability.R |only reverseR-0.1/reverseR/inst |only reverseR-0.1/reverseR/man/lmMult.Rd |only reverseR-0.1/reverseR/man/lmThresh.Rd |only reverseR-0.1/reverseR/man/shinyInfl.Rd |only reverseR-0.1/reverseR/man/simInfl.Rd |only reverseR-0.1/reverseR/man/stability.Rd |only reverseR-0.2/reverseR/DESCRIPTION | 28 +-- reverseR-0.2/reverseR/MD5 | 54 ++---- reverseR-0.2/reverseR/NAMESPACE | 41 ++-- reverseR-0.2/reverseR/NEWS | 14 + reverseR-0.2/reverseR/R/bootLM.R |only reverseR-0.2/reverseR/R/jackLM.R |only reverseR-0.2/reverseR/R/lmExact.R | 4 reverseR-0.2/reverseR/R/lmInfl.R | 265 ++++++++++---------------------- reverseR-0.2/reverseR/R/lmPlot.R |only reverseR-0.2/reverseR/R/pcomp.R |only reverseR-0.2/reverseR/R/regionInfl.R |only reverseR-0.2/reverseR/R/rpLM.R |only reverseR-0.2/reverseR/README.md | 14 - reverseR-0.2/reverseR/data |only reverseR-0.2/reverseR/man/PNAS2015.Rd |only reverseR-0.2/reverseR/man/bootLM.Rd |only reverseR-0.2/reverseR/man/jackLM.Rd |only reverseR-0.2/reverseR/man/lmExact.Rd | 4 reverseR-0.2/reverseR/man/lmInfl.Rd | 138 +++++++++------- reverseR-0.2/reverseR/man/lmPlot.Rd | 65 ++----- reverseR-0.2/reverseR/man/pcomp.Rd |only reverseR-0.2/reverseR/man/regionInfl.Rd |only reverseR-0.2/reverseR/man/rpLM.Rd |only 34 files changed, 263 insertions(+), 364 deletions(-)
Title: Analyse Political Texts
Description: Wrangle and annotate different types of political texts.
It also introduces Urgency Analysis,
a new method for the analysis of urgency in political texts.
Author: Henrique Sposito [cre, aut, ctb] ,
James Hollway [ctb] ,
Jael Tan [ctb]
Maintainer: Henrique Sposito <henrique.sposito@graduateinstitute.ch>
Diff between poldis versions 0.1.1 dated 2024-07-21 and 0.1.2 dated 2024-09-04
DESCRIPTION | 12 - MD5 | 45 +++--- NAMESPACE | 3 NEWS.md | 16 ++ R/priorities.R | 34 +---- R/sysdata.rda |binary R/text_tools.R | 24 ++- R/topic.R | 31 +++- R/urgency.R | 265 +++++++++++++++++++++++++++++---------- R/utils.R | 27 +++ README.md | 10 - man/annotate_text.Rd | 4 man/extract_date.Rd | 3 man/extract_locations.Rd | 4 man/extract_names.Rd | 3 man/extract_text_similarities.Rd | 3 man/gather_related_terms.Rd | 8 + man/gather_topics.Rd | 10 + man/get_urgency.Rd | 53 ++++++- man/select_priorities.Rd | 3 man/sim_urgency.Rd |only tests/testthat/test_priorities.R | 17 ++ tests/testthat/test_text_tools.R | 4 tests/testthat/test_urgency.R | 59 +++++++- 24 files changed, 487 insertions(+), 151 deletions(-)
Title: Hexagonal Binning Routines
Description: Binning and plotting functions for hexagonal bins.
Author: Dan Carr [aut],
ported by Nicholas Lewin-Koh [aut],
Martin Maechler [aut],
contains copies of lattice functions written by Deepayan Sarkar [aut],
Edzer Pebesma [cre]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between hexbin versions 1.28.3 dated 2023-03-21 and 1.28.4 dated 2024-09-04
DESCRIPTION | 37 +++++++++++++++++++++++++++++-------- MD5 | 14 +++++++------- R/hdiffplot.R | 4 ++-- R/hexbinplot.R | 2 +- build/vignette.rds |binary inst/doc/hexagon_binning.pdf |binary man/colramp.Rd | 1 - tests/hdiffplot.Rout.save | 10 ++++++---- 8 files changed, 45 insertions(+), 23 deletions(-)
Title: Tools: Moving Window Statistics, GIF, Base64, ROC AUC, etc
Description: Contains several basic utility functions including: moving
(rolling, running) window statistic functions, read/write for
GIF and ENVI binary files, fast calculation of AUC, LogitBoost
classifier, base64 encoder/decoder, round-off-error-free sum
and cumsum, etc.
Author: Jarek Tuszynski [aut],
Michael Dietze [cre]
Maintainer: Michael Dietze <michael.dietze@uni-goettingen.de>
Diff between caTools versions 1.18.2 dated 2021-03-28 and 1.18.3 dated 2024-09-04
CHANGES | 5 DESCRIPTION | 21 +- MD5 | 20 +- NAMESPACE | 2 NEWS | 6 man/caTools-package.Rd | 112 +++++-------- man/colAUC.Rd | 26 +-- src/Gif2R.cpp | 18 +- src/GifTools.cpp | 400 ++++++++++++++++++++++++------------------------- src/GifTools.h | 2 src/runfunc.c | 68 ++++---- 11 files changed, 332 insertions(+), 348 deletions(-)
Title: Optimally Robust Estimation for Extreme Value Distributions
Description: Optimally robust estimation for extreme value distributions using S4 classes and
methods (based on packages 'distr', 'distrEx', 'distrMod', 'RobAStBase', and
'ROptEst'); the underlying theoretic results can be found in Ruckdeschel and
Horbenko, (2013 and 2012), \doi{10.1080/02331888.2011.628022} and
\doi{10.1007/s00184-011-0366-4}.
Author: Nataliya Horbenko [aut, cph],
Bernhard Spangl [ctb] ,
Sascha Desmettre [ctb] ,
Eugen Massini [ctb] ,
Daria Pupashenko [ctb] ,
Gerald Kroisandt [ctb] ,
Matthias Kohl [aut, cph] ,
Peter Ruckdeschel [cre, aut, cph]
Maintainer: Peter Ruckdeschel <peter.ruckdeschel@uni-oldenburg.de>
Diff between RobExtremes versions 1.3.0 dated 2024-02-08 and 1.3.1 dated 2024-09-04
DESCRIPTION | 16 ++++++------- MD5 | 32 +++++++++++++-------------- R/sysdata.rda |binary build/partial.rdb |binary inst/NEWS | 7 +++++ man/0RobExtremes-package.Rd | 6 ++--- man/E.Rd | 4 +-- man/GumbelLocationFamily.Rd | 2 - man/LDEstimate-class.Rd | 4 +-- man/LDEstimator.Rd | 4 +-- man/PickandsEstimator.Rd | 4 +-- man/QuantileBCCEstimator.Rd | 4 +-- man/getCVaR.Rd | 2 - man/getStartIC-methods.Rd | 2 - man/internalProbFamilyReturnClasses-class.Rd | 4 +-- man/internalldeHelpers.Rd | 2 - man/mov2bckRef-methods.Rd | 2 - 17 files changed, 51 insertions(+), 44 deletions(-)
Title: Highly Performant String Case Converter
Description: Provides a case conversion between common cases like CamelCase and
snake_case. Using the 'rust crate heck' <https://github.com/withoutboats/heck>
as the backend for a highly performant case conversion for 'R'.
Author: Josiah Parry [aut] ,
Dyfan Jones [cre]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between heck versions 0.1.1 dated 2024-07-04 and 0.1.2 dated 2024-09-04
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
Title: Chronological Ordering for Fossils and Environmental Events
Description: While individual calibrated radiocarbon dates can span several centuries, combining multiple dates together with any chronological constraints can make a chronology much more robust and precise. This package uses Bayesian methods to enforce the chronological ordering of radiocarbon and other dates, for example for trees with multiple radiocarbon dates spaced at exactly known intervals (e.g., 10 annual rings). For methods see Christen 2003 <doi:10.11141/ia.13.2>. Another example is sites where the relative chronological position of the dates is taken into account - the ages of dates further down a site must be older than those of dates further up (Buck, Kenworthy, Litton and Smith 1991 <doi:10.1017/S0003598X00080534>; Nicholls and Jones 2001 <doi:10.1111/1467-9876.00250>).
Author: Maarten Blaauw [aut, cre] ,
Marco A. Aquino Lopez [aut, ctb]
,
J. Andres Christen [aut, ctb, cph]
Maintainer: Maarten Blaauw <maarten.blaauw@qub.ac.uk>
Diff between coffee versions 0.3.0 dated 2024-01-29 and 0.4.0 dated 2024-09-04
coffee-0.3.0/coffee/vignettes/trees |only coffee-0.4.0/coffee/DESCRIPTION | 26 - coffee-0.4.0/coffee/MD5 | 53 +- coffee-0.4.0/coffee/NAMESPACE | 4 coffee-0.4.0/coffee/NEWS.md | 4 coffee-0.4.0/coffee/R/ccurve.R |only coffee-0.4.0/coffee/R/coffee-package.R | 2 coffee-0.4.0/coffee/R/coffee.R | 6 coffee-0.4.0/coffee/R/dists.R | 2 coffee-0.4.0/coffee/R/plots.R | 7 coffee-0.4.0/coffee/R/readwrite.R | 8 coffee-0.4.0/coffee/R/strat.R | 31 - coffee-0.4.0/coffee/R/tree.R | 2 coffee-0.4.0/coffee/R/twalk.R | 2 coffee-0.4.0/coffee/build/partial.rdb |binary coffee-0.4.0/coffee/build/vignette.rds |binary coffee-0.4.0/coffee/inst/CITATION | 64 ++- coffee-0.4.0/coffee/inst/doc/coffee.R | 2 coffee-0.4.0/coffee/inst/doc/coffee.Rmd | 34 - coffee-0.4.0/coffee/inst/doc/coffee.html | 130 +++--- coffee-0.4.0/coffee/man/IAT.Rd | 2 coffee-0.4.0/coffee/man/ccurve.Rd |only coffee-0.4.0/coffee/man/draw.strat.Rd | 2 coffee-0.4.0/coffee/man/glue.ccurves.Rd |only coffee-0.4.0/coffee/man/rings.Rd | 2 coffee-0.4.0/coffee/vignettes/coffee.Rmd | 34 - coffee-0.4.0/coffee/vignettes/strats/mystrat/mystrat.csv | 10 coffee-0.4.0/coffee/vignettes/strats/mystrat/mystrat.out | 200 +++++----- coffee-0.4.0/coffee/vignettes/strats/mystrat/mystrat_energy.out | 200 +++++----- 29 files changed, 439 insertions(+), 388 deletions(-)
Title: Access and Harmonize Childfree Demographic Data
Description: Reads demographic data from a variety of public data sources, extracting and harmonizing variables useful for the study of childfree individuals. The identification of childfree individuals and those with other family statuses uses Neal & Neal's (2024) "A Framework for Studying Adults who Neither have Nor Want Children" <doi:10.1177/10664807231198869>; A pre-print is available at <doi:10.31234/osf.io/fa89m>.
Author: Zachary Neal [aut, cre] ,
Jennifer Watling Neal [aut]
Maintainer: Zachary Neal <zpneal@msu.edu>
Diff between childfree versions 0.0.2 dated 2024-07-09 and 0.0.3 dated 2024-09-04
DESCRIPTION | 8 - MD5 | 34 ++-- NEWS.md | 4 R/dhs.R | 62 ++++++-- R/nsfg.R | 355 +++++++++++++++++++++++++++++++----------------- R/soss.R | 86 ++++++++--- R/utils.R | 4 README.md | 3 inst/doc/childfree.R | 6 inst/doc/childfree.Rmd | 14 + inst/doc/childfree.html | 38 ++--- inst/doc/codebooks.Rmd | 2 inst/doc/codebooks.html | 12 + man/dhs.Rd | 34 +++- man/nsfg.Rd | 39 +++-- man/soss.Rd | 36 +++- vignettes/childfree.Rmd | 14 + vignettes/codebooks.Rmd | 2 18 files changed, 499 insertions(+), 254 deletions(-)
Title: Bayesian Cluster Validity Index
Description: Algorithms for computing and generating plots with and without error bars for Bayesian cluster validity index (BCVI) (O. Preedasawakul, and N. Wiroonsri, A Bayesian Cluster Validity Index, Computational Statistics & Data Analysis, 202, 108053, 2025. <doi:10.1016/j.csda.2024.108053>) based on several underlying cluster validity indexes (CVIs) including Calinski-Harabasz, Chou-Su-Lai, Davies-Bouldin, Dunn, Pakhira-Bandyopadhyay-Maulik, Point biserial correlation, the score function, Starczewski, and Wiroonsri indices for hard clustering, and Correlation Cluster Validity, the generalized C, HF, KWON, KWON2, Modified Pakhira-Bandyopadhyay-Maulik, Pakhira-Bandyopadhyay-Maulik, Tang, Wiroonsri-Preedasawakul, Wu-Li, and Xie-Beni indices for soft clustering. The package is compatible with K-means, fuzzy C means, EM clustering, and hierarchical clustering (single, average, and complete linkage). Though BCVI is compatible with any underlying existing CVIs, we recommend users to use ei [...truncated...]
Author: Nathakhun Wiroonsri [aut] ,
Onthada Preedasawakul [cre, aut]
Maintainer: Onthada Preedasawakul <o.preedasawakul@gmail.com>
Diff between BayesCVI versions 1.0.0 dated 2024-02-26 and 1.0.1 dated 2024-09-04
DESCRIPTION | 10 +++--- MD5 | 78 ++++++++++++++++++++++++++-------------------------- NEWS.md | 3 ++ R/B1_data.R | 2 - R/B2_data.R | 2 - R/B3_data.R | 2 - R/B4_data.R | 2 - R/B5_data.R | 2 - R/B6_data.R | 2 - R/B7_data.R | 2 - build/partial.rdb |binary inst/CITATION | 14 +++++---- man/B1_data.Rd | 2 - man/B2_data.Rd | 2 - man/B3_data.Rd | 2 - man/B4_data.Rd | 2 - man/B5_data.Rd | 2 - man/B6_data.Rd | 2 - man/B7_data.Rd | 60 ++++++++++++++++++++-------------------- man/B_CCV.IDX.Rd | 2 - man/B_CH.IDX.Rd | 2 - man/B_CSL.IDX.Rd | 2 - man/B_DB.IDX.Rd | 2 - man/B_DI.IDX.Rd | 2 - man/B_GC.IDX.Rd | 2 - man/B_HF.IDX.Rd | 2 - man/B_KPBM.IDX.Rd | 2 - man/B_KWON.IDX.Rd | 2 - man/B_KWON2.IDX.Rd | 2 - man/B_PB.IDX.Rd | 2 - man/B_PBM.IDX.Rd | 2 - man/B_SF.IDX.Rd | 2 - man/B_STRPBM.IDX.Rd | 2 - man/B_TANG.IDX.Rd | 2 - man/B_WL.IDX.Rd | 2 - man/B_WP.IDX.Rd | 4 +- man/B_Wvalid.Rd | 2 - man/B_XB.IDX.Rd | 2 - man/BayesCVIs.Rd | 2 - man/plot_BCVI.Rd | 2 - 40 files changed, 120 insertions(+), 115 deletions(-)
Title: Fast Text Tokenization
Description: Interfaces with the 'Hugging Face' tokenizers library to provide implementations
of today's most used tokenizers such as the 'Byte-Pair Encoding' algorithm
<https://huggingface.co/docs/tokenizers/index>. It's extremely fast for both
training new vocabularies and tokenizing texts.
Author: Daniel Falbel [aut, cre],
Posit [cph]
Maintainer: Daniel Falbel <daniel@posit.co>
Diff between tok versions 0.1.3 dated 2024-07-06 and 0.1.4 dated 2024-09-04
DESCRIPTION | 6 - MD5 | 14 +-- NEWS.md | 5 + src/Makevars | 2 src/rust/Cargo.lock | 170 +++++++++++++++++++++++--------------- src/rust/Cargo.toml | 2 src/rust/config/cargo-config.toml | 4 src/rust/vendor.tar.xz |binary 8 files changed, 126 insertions(+), 77 deletions(-)
Title: Helper Functions for Simulation Studies
Description: Calculates performance criteria measures and associated Monte Carlo standard errors for simulation results. Includes functions to help run simulation studies. Our derivation and explanation of formulas and our general simulation workflow is closely aligned with the approach described by Morris, White, and Crowther (2019) <DOI:10.1002/sim.8086>.
Author: Megha Joshi [aut, cre] ,
James Pustejovsky [aut]
Maintainer: Megha Joshi <megha.j456@gmail.com>
Diff between simhelpers versions 0.2.1 dated 2024-02-29 and 0.3.0 dated 2024-09-04
DESCRIPTION | 18 MD5 | 73 +-- NAMESPACE | 7 NEWS.md | 7 R/bootstrap-projection.R |only R/calc_absolute.R | 51 +- R/calc_coverage.R | 369 +++++++++++++++- R/calc_rejection.R | 249 ++++++++++ R/calc_relative.R | 63 +- R/calc_relative_var.R | 50 +- R/repeat_and_stack.R |only R/utilities.R |only build/partial.rdb |binary inst/REFERENCES.bib | 47 ++ inst/doc/MCSE.R | 28 - inst/doc/MCSE.Rmd | 31 - inst/doc/MCSE.html | 215 +++++++-- inst/doc/simulation_workflow.R | 20 inst/doc/simulation_workflow.Rmd | 2 inst/doc/simulation_workflow.html | 18 inst/doc/visualization.R | 4 inst/doc/visualization.html | 4 man/bootstrap_CIs.Rd |only man/bootstrap_pvals.Rd |only man/calc_absolute.Rd | 29 - man/calc_coverage.Rd | 19 man/calc_rejection.Rd | 6 man/calc_relative.Rd | 19 man/calc_relative_var.Rd | 39 + man/extrapolate_coverage.Rd |only man/extrapolate_rejection.Rd |only man/repeat_and_stack.Rd |only tests/testthat/test_bootstrap_CI_construction.R |only tests/testthat/test_bootstrap_CI_extrapolation.R |only tests/testthat/test_bootstrap_pval_construction.R |only tests/testthat/test_bootstrap_rejection_extrapolation.R |only tests/testthat/test_bundle_sim.R | 84 --- tests/testthat/test_calc_combinations.R | 5 tests/testthat/test_perfm_conv.R | 25 - tests/testthat/test_perfm_mcse.R | 86 ++- tests/testthat/test_relative_variance.R |only tests/testthat/test_repeat_and_stack.R |only tests/testthat/test_winsorize_options.R |only vignettes/MCSE.Rmd | 31 - vignettes/simulation_workflow.Rmd | 2 45 files changed, 1245 insertions(+), 356 deletions(-)
Title: Optimal Subset Selection for Transformation Models
Description: Greedy optimal subset selection for transformation models
(Hothorn et al., 2018, <doi:10.1111/sjos.12291> ) based on the abess
algorithm (Zhu et al., 2020, <doi:10.1073/pnas.2014241117> ). Applicable to
models from packages 'tram' and 'cotram'.
Author: Lucas Kook [aut, cre],
Sandra Siegfried [ctb],
Torsten Hothorn [ctb]
Maintainer: Lucas Kook <lucasheinrich.kook@gmail.com>
Diff between tramvs versions 0.0-4 dated 2023-03-10 and 0.0-6 dated 2024-09-04
tramvs-0.0-4/tramvs/tests/test-continuous.R |only tramvs-0.0-4/tramvs/tests/test-continuous.Rout.save |only tramvs-0.0-4/tramvs/tests/test-count.R |only tramvs-0.0-4/tramvs/tests/test-count.Rout.save |only tramvs-0.0-4/tramvs/tests/test-mandatory.R |only tramvs-0.0-4/tramvs/tests/test-mandatory.Rout.save |only tramvs-0.0-4/tramvs/tests/test-ordinal.R |only tramvs-0.0-4/tramvs/tests/test-ordinal.Rout.save |only tramvs-0.0-4/tramvs/tests/test-shiftscale.R |only tramvs-0.0-4/tramvs/tests/test-shiftscale.Rout.save |only tramvs-0.0-4/tramvs/tests/test-survival.R |only tramvs-0.0-4/tramvs/tests/test-survival.Rout.save |only tramvs-0.0-4/tramvs/tests/test-weibull.R |only tramvs-0.0-4/tramvs/tests/test-weibull.Rout.save |only tramvs-0.0-6/tramvs/DESCRIPTION | 18 ++- tramvs-0.0-6/tramvs/MD5 | 61 ++++++------- tramvs-0.0-6/tramvs/NAMESPACE | 10 ++ tramvs-0.0-6/tramvs/R/methods.R | 15 +++ tramvs-0.0-6/tramvs/R/mmltvs.R |only tramvs-0.0-6/tramvs/R/models.R | 32 +++++-- tramvs-0.0-6/tramvs/R/tramvs.R | 59 ++++++++---- tramvs-0.0-6/tramvs/build/vignette.rds |binary tramvs-0.0-6/tramvs/inst/doc/tramvs.R | 91 ++++++++++++++++++++ tramvs-0.0-6/tramvs/inst/doc/tramvs.pdf |binary tramvs-0.0-6/tramvs/man/BoxCoxVS.Rd | 8 + tramvs-0.0-6/tramvs/man/ColrVS.Rd | 8 + tramvs-0.0-6/tramvs/man/CoxphVS.Rd | 8 + tramvs-0.0-6/tramvs/man/LehmannVS.Rd | 8 + tramvs-0.0-6/tramvs/man/LmVS.Rd | 8 + tramvs-0.0-6/tramvs/man/PolrVS.Rd | 8 + tramvs-0.0-6/tramvs/man/SurvregVS.Rd | 8 + tramvs-0.0-6/tramvs/man/abess_mmlt.Rd |only tramvs-0.0-6/tramvs/man/coef.mmltvs.Rd |only tramvs-0.0-6/tramvs/man/cor_init.mmlt.Rd |only tramvs-0.0-6/tramvs/man/cotramVS.Rd | 8 + tramvs-0.0-6/tramvs/man/mmltVS.Rd |only tramvs-0.0-6/tramvs/man/tramvs.Rd | 18 +++ tramvs-0.0-6/tramvs/tests/testthat |only tramvs-0.0-6/tramvs/tests/testthat.R |only 39 files changed, 299 insertions(+), 69 deletions(-)
Title: Get Silhouettes of Organisms from PhyloPic
Description: Work with the PhyloPic Web Service (<http://api-docs.phylopic.org/v2/>)
to fetch silhouette images of organisms. Includes functions for adding
silhouettes to both base R plots and ggplot2 plots.
Author: William Gearty [aut, cre] ,
Lewis A. Jones [aut] ,
Scott Chamberlain [aut] ,
David Miller [ctb]
Maintainer: William Gearty <willgearty@gmail.com>
Diff between rphylopic versions 1.4.0 dated 2024-04-23 and 1.5.0 dated 2024-09-04
DESCRIPTION | 13 MD5 | 92 - NAMESPACE | 6 NEWS.md | 6 R/add_phylopic.r | 47 R/add_phylopic_base.r | 144 +- R/add_phylopic_legend.R | 24 R/geom_phylopic.R | 197 ++- R/phylopic_utils.R | 11 R/pick_phylopic.R | 2 README.md | 10 build/vignette.rds |binary inst/doc/a-getting-started.Rmd | 59 inst/doc/a-getting-started.html | 40 inst/doc/b-advanced-ggplot.Rmd | 108 - inst/doc/b-advanced-ggplot.html | 279 ++-- inst/doc/c-advanced-base.Rmd | 64 - inst/doc/c-advanced-base.html | 24 man/add_phylopic.Rd | 39 man/add_phylopic_base.Rd | 56 man/add_phylopic_legend.Rd | 12 man/geom_phylopic.Rd | 88 + man/scales.Rd |only tests/testthat/Rplots.pdf |binary tests/testthat/_snaps/add_phylopic/phylopics-on-top-of-plot.svg | 608 +--------- tests/testthat/_snaps/add_phylopic/phylopics-with-alt-height-and-width.svg |only tests/testthat/_snaps/add_phylopic/phylopics-with-widths.svg |only tests/testthat/_snaps/add_phylopic_base/phylopic-with-width.svg |only tests/testthat/_snaps/geom_phylopic/geom-phylopic-with-alt-height-and-width.svg |only tests/testthat/_snaps/geom_phylopic/geom-phylopic-with-no-dims.svg |only tests/testthat/_snaps/geom_phylopic/geom-phylopic-with-width.svg |only tests/testthat/_snaps/geom_phylopic/phylopic-key-glyph-with-img.svg | 80 - tests/testthat/_snaps/geom_phylopic/phylopic-key-glyph-with-uuid.svg | 80 - tests/testthat/_snaps/geom_phylopic/phylopic-key-glyph.svg | 80 - tests/testthat/_snaps/phylopic_utils/plot-picture.svg | 4 tests/testthat/test-add_phylopic.R | 73 - tests/testthat/test-add_phylopic_base.R | 26 tests/testthat/test-add_phylopic_legend.R | 19 tests/testthat/test-geom_phylopic.R | 63 - vignettes/a-getting-started.Rmd | 59 vignettes/b-advanced-ggplot.Rmd | 108 - vignettes/base-phylo-plot-3-1.png |binary vignettes/base-phylo-plot-4-1.png |binary vignettes/c-advanced-base.Rmd | 64 - vignettes/ggplot-geog-plot-1-1.png |binary vignettes/ggplot-penguin-plot-3-1.png |binary vignettes/ggplot-penguin-plot-3b-1.png |only vignettes/ggplot-penguin-plot-5-1.png |binary vignettes/ggplot-penguin-plot-6-1.png |binary vignettes/ggplot-phylo-plot-3-1.png |binary vignettes/ggplot-phylo-plot-4-1.png |binary 51 files changed, 1333 insertions(+), 1252 deletions(-)
Title: Using Cytogenetics Data in R
Description: Defines classes and methods to process text-based
cytogenetics using the CytoGPS web site, then import the results
into R for further analysis and graphing.
Author: Kevin R. Coombes [aut, cre],
Dwayne Tally [aut]
Maintainer: Kevin R. Coombes <krc@silicovore.com>
Diff between RCytoGPS versions 1.2.5 dated 2023-11-27 and 1.2.7 dated 2024-09-04
DESCRIPTION | 20 + MD5 | 18 - R/sysdata.rda |binary build/vignette.rds |binary data/cytoData.rda |binary data/cytobandLocations.rda |binary inst/doc/Gallery.html | 414 +++++++++++++++++++++------------------- inst/doc/IntroRCytoGPS.html | 442 +++++++++++++++++++++++-------------------- tests/test100-read.R | 4 tests/test100-read.Rout.save | 16 - 10 files changed, 498 insertions(+), 416 deletions(-)
Title: Quantitative Analysis of Textual Data
Description: A fast, flexible, and comprehensive framework for
quantitative text analysis in R. Provides functionality for corpus management,
creating and manipulating tokens and n-grams, exploring keywords in context,
forming and manipulating sparse matrices
of documents by features and feature co-occurrences, analyzing keywords, computing feature similarities and
distances, applying content dictionaries, applying supervised and unsupervised machine learning,
visually representing text and text analyses, and more.
Author: Kenneth Benoit [cre, aut, cph]
,
Kohei Watanabe [aut] ,
Haiyan Wang [aut] ,
Paul Nulty [aut] ,
Adam Obeng [aut] ,
Stefan Mueller [aut] ,
Akitaka Matsuo [aut] ,
William Lowe [aut] ,
Christian Mueller [ctb],
Olivier Delmarcelle [ctb] ,
European Research [...truncated...]
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>
Diff between quanteda versions 4.0.2 dated 2024-04-24 and 4.1.0 dated 2024-09-04
DESCRIPTION | 14 +- MD5 | 98 ++++++++++--------- NAMESPACE | 5 - NEWS.md | 19 +++ R/RcppExports.R | 20 ++-- R/dfm_trim.R | 161 ++++++++++---------------------- R/dfm_weight.R | 10 -- R/message.R | 46 ++++++++- R/pattern2fixed.R | 3 R/quanteda-documentation.R | 2 R/tokens-methods.R | 8 - R/tokens.R | 4 R/tokens_compound.R | 20 ++-- R/tokens_select.R | 14 +- R/tokens_subset.R | 16 ++- R/tokens_trim.R |only R/tokens_xptr.R | 6 - build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 5 + inst/doc/quickstart.html | 6 - inst/include/lib.h | 46 +++++++-- inst/include/tokens.h | 18 ++- man/dfm_trim.Rd | 22 ---- man/message_dfm.Rd |only man/message_tokens.Rd |only man/messages.Rd |only man/msg.Rd | 6 - man/print-methods.Rd | 5 - man/tokens-class.Rd | 2 man/tokens_compound.Rd | 5 - man/tokens_select.Rd | 4 man/tokens_subset.Rd | 4 man/tokens_trim.Rd |only src/RcppExports.cpp | 48 ++++++--- src/index.cpp | 2 src/tokens_compound.cpp | 102 ++++++++++++-------- src/tokens_lookup.cpp | 2 src/tokens_replace.cpp | 21 ++-- src/tokens_restore.cpp | 6 - src/tokens_xptr.cpp | 58 +++++++++-- src/utility.cpp | 2 tests/testthat/test-dfm.R | 35 +++++++ tests/testthat/test-dfm_trim.R | 73 ++++++++------ tests/testthat/test-dfm_weight.R | 100 ++++++++++---------- tests/testthat/test-pattern2fixed.R | 2 tests/testthat/test-tokens.R | 7 + tests/testthat/test-tokens_compound.R | 77 +++++++++++---- tests/testthat/test-tokens_recompile.R | 165 ++++++++++----------------------- tests/testthat/test-tokens_select.R | 6 - tests/testthat/test-tokens_subset.R | 5 + tests/testthat/test-tokens_trim.R |only tests/testthat/test-tokens_xptr.R | 59 +++++++++++ 53 files changed, 777 insertions(+), 562 deletions(-)
Title: Heteroskedastic Gaussian Process Modeling and Design under
Replication
Description: Performs Gaussian process regression with heteroskedastic noise following the model by Binois, M., Gramacy, R., Ludkovski, M. (2016) <doi:10.48550/arXiv.1611.05902>, with implementation details in Binois, M. & Gramacy, R. B. (2021) <doi:10.18637/jss.v098.i13>. The input dependent noise is modeled as another Gaussian process. Replicated observations are encouraged as they yield computational savings. Sequential design procedures based on the integrated mean square prediction error and lookahead heuristics are provided, and notably fast update functions when adding new observations.
Author: Mickael Binois [aut, cre],
Robert B. Gramacy [aut]
Maintainer: Mickael Binois <mickael.binois@inria.fr>
Diff between hetGP versions 1.1.6 dated 2023-10-02 and 1.1.7 dated 2024-09-04
DESCRIPTION | 24 +++-- MD5 | 35 ++++---- NAMESPACE | 2 NEWS | 6 + R/crnGP.R | 21 ++++- R/hetGP-package.R | 5 - R/hetGP.R | 6 - R/hetTP.R | 4 R/optim.R | 182 +++++++++++++++++++++++++++++++++++++++++++- build/vignette.rds |binary inst/doc/hetGP_vignette.pdf |binary man/ato.Rd | 2 man/crit_logEI.Rd |only man/hetGP-package.Rd | 2 man/mleHetGP.Rd | 2 man/mleHetTP.Rd | 2 man/mleHomTP.Rd | 2 tests/testthat/test_LOO.R | 139 ++++++++++++++++++++++++++------- tests/testthat/test_optim.R | 67 +++++++++++++++- 19 files changed, 430 insertions(+), 71 deletions(-)
Title: Generalized Kernel Regularized Least Squares
Description: Kernel regularized least squares, also known as kernel ridge regression,
is a flexible machine learning method. This package implements this method by
providing a smooth term for use with 'mgcv' and uses random sketching to
facilitate scalable estimation on large datasets. It provides additional
functions for calculating marginal effects after estimation and for use with
ensembles ('SuperLearning'), double/debiased machine learning ('DoubleML'),
and robust/clustered standard errors ('sandwich'). Chang and Goplerud (2024)
<doi:10.1017/pan.2023.27> provide further details.
Author: Qing Chang [aut],
Max Goplerud [aut, cre]
Maintainer: Max Goplerud <mgoplerud@austin.utexas.edu>
Diff between gKRLS versions 1.0.2 dated 2023-04-20 and 1.0.3 dated 2024-09-04
DESCRIPTION | 18 ++++----- MD5 | 41 +++++++++++---------- NAMESPACE | 2 + NEWS.md | 6 +++ R/AME_function.R | 4 +- R/RcppExports.R | 8 ++-- R/kernel_function.R | 58 +++++++++++++++++++++++++++++++ R/main_function.R | 58 +++++++++++++++++++++++++------ R/mgcv_function.R | 28 ++++++++++---- R/ml_function.R | 2 - README.md | 4 +- build |only man/calculate_effects.Rd | 4 +- man/create_sketched_kernel.Rd | 2 - man/gKRLS.Rd | 41 ++++++++++++++++----- man/ml_gKRLS.Rd | 2 - src/RcppExports.cpp | 18 +++++---- src/calc_kernel.cpp | 10 ++++- src/calc_kernel.h | 3 + src/marginal_effects.cpp | 6 +-- src/sketch_kern.cpp | 5 +- tests/testthat/test_calibration.R |only tests/testthat/test_kernel_calibration.R |only 23 files changed, 234 insertions(+), 86 deletions(-)
Title: Assess Water Quality Trends with Generalized Additive Models
Description: Assess Water Quality Trends for Long-Term Monitoring Data in Estuaries using
Generalized Additive Models following Wood (2017) <doi:10.1201/9781315370279> and Error
Propagation with Mixed-Effects Meta-Analysis following Sera et al. (2019) <doi:10.1002/sim.8362>.
Methods are available for model fitting, assessment of fit, annual and seasonal trend tests, and
visualization of results.
Author: Marcus Beck [aut, cre] ,
Perry de Valpine [aut],
Rebecca Murphy [aut],
Ian Wren [aut],
Ariella Chelsky [aut],
Melissa Foley [aut] ,
David Senn [aut]
Maintainer: Marcus Beck <mbeck@tbep.org>
Diff between wqtrends versions 1.4.2 dated 2024-01-26 and 1.5.0 dated 2024-09-04
wqtrends-1.4.2/wqtrends/inst/doc/introduction.R |only wqtrends-1.4.2/wqtrends/inst/doc/introduction.Rmd |only wqtrends-1.4.2/wqtrends/inst/doc/introduction.html |only wqtrends-1.4.2/wqtrends/vignettes/introduction.Rmd |only wqtrends-1.5.0/wqtrends/DESCRIPTION | 8 - wqtrends-1.5.0/wqtrends/MD5 | 75 +++++----- wqtrends-1.5.0/wqtrends/NAMESPACE | 2 wqtrends-1.5.0/wqtrends/NEWS.md | 8 + wqtrends-1.5.0/wqtrends/R/anlz_avgseason.R | 8 - wqtrends-1.5.0/wqtrends/R/anlz_metseason.R | 12 + wqtrends-1.5.0/wqtrends/R/anlz_mixmeta.R | 9 - wqtrends-1.5.0/wqtrends/R/anlz_sumstats.R |only wqtrends-1.5.0/wqtrends/R/anlz_sumtrndseason.R | 10 + wqtrends-1.5.0/wqtrends/R/anlz_trndseason.R | 44 +++-- wqtrends-1.5.0/wqtrends/R/globalVariables.R | 2 wqtrends-1.5.0/wqtrends/R/show_metseason.R | 29 +-- wqtrends-1.5.0/wqtrends/R/show_mettrndseason.R | 59 +++---- wqtrends-1.5.0/wqtrends/R/show_perchg.R | 4 wqtrends-1.5.0/wqtrends/R/show_sumtrndseason.R | 12 + wqtrends-1.5.0/wqtrends/R/show_sumtrndseason2.R | 17 +- wqtrends-1.5.0/wqtrends/R/show_trndseason.R | 52 ++++-- wqtrends-1.5.0/wqtrends/README.md | 2 wqtrends-1.5.0/wqtrends/build/vignette.rds |binary wqtrends-1.5.0/wqtrends/inst/doc/wqtrends.R |only wqtrends-1.5.0/wqtrends/inst/doc/wqtrends.Rmd |only wqtrends-1.5.0/wqtrends/inst/doc/wqtrends.html |only wqtrends-1.5.0/wqtrends/man/anlz_avgseason.Rd | 4 wqtrends-1.5.0/wqtrends/man/anlz_metseason.Rd | 14 + wqtrends-1.5.0/wqtrends/man/anlz_mixmeta.Rd | 4 wqtrends-1.5.0/wqtrends/man/anlz_sumstats.Rd |only wqtrends-1.5.0/wqtrends/man/anlz_sumtrndseason.Rd | 7 wqtrends-1.5.0/wqtrends/man/anlz_trndseason.Rd | 13 + wqtrends-1.5.0/wqtrends/man/show_metseason.Rd | 10 - wqtrends-1.5.0/wqtrends/man/show_mettrndseason.Rd | 14 + wqtrends-1.5.0/wqtrends/man/show_perchg.Rd | 2 wqtrends-1.5.0/wqtrends/man/show_sumtrndseason.Rd | 5 wqtrends-1.5.0/wqtrends/man/show_sumtrndseason2.Rd | 5 wqtrends-1.5.0/wqtrends/man/show_trndseason.Rd | 17 +- wqtrends-1.5.0/wqtrends/tests/testthat/test-anlz_avgseason.R | 12 + wqtrends-1.5.0/wqtrends/tests/testthat/test-anlz_metseason.R | 10 + wqtrends-1.5.0/wqtrends/tests/testthat/test-anlz_sumstats.R |only wqtrends-1.5.0/wqtrends/tests/testthat/test-show_mettrndseason.R | 4 wqtrends-1.5.0/wqtrends/tests/testthat/test-show_trndseason.R | 16 -- wqtrends-1.5.0/wqtrends/vignettes/wqtrends.Rmd |only 44 files changed, 298 insertions(+), 192 deletions(-)
Title: Download Files from 'AWS S3'
Description: Download files hosted on 'AWS S3' (Amazon Web Services Simple Storage Service; <https://aws.amazon.com/s3/>) to a local directory based on their URI. Avoid downloading files that are already present locally. Allow for customization of where to store downloaded files.
Author: Cole Brokamp [aut, cre] ,
Erika Rasnick [aut],
Robrecht Cannoodt [aut]
Maintainer: Cole Brokamp <cole.brokamp@gmail.com>
Diff between s3 versions 1.0.0 dated 2023-08-08 and 1.1.0 dated 2024-09-04
DESCRIPTION | 27 ++++++++++++++++----------- MD5 | 19 ++++++++++--------- NEWS.md |only R/s3_check_for_file.R | 8 ++++---- R/s3_get.R | 18 ++++++++++++------ R/s3_get_files.R | 8 +++++--- R/s3_get_signed_url.R | 2 ++ README.md | 10 +++++----- man/s3-package.Rd | 5 +++-- man/s3_get.Rd | 14 +++++++++++--- man/s3_get_files.Rd | 6 +++++- 11 files changed, 73 insertions(+), 44 deletions(-)
More information about mlr3superlearner at CRAN
Permanent link
Title: Paws Low-Level Amazon Web Services API
Description: Functions for making low-level API requests to Amazon Web Services
<https://aws.amazon.com>. The functions handle building, signing, and
sending requests, and receiving responses. They are designed to help build
higher-level interfaces to individual services, such as Simple Storage
Service (S3).
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.common versions 0.7.5 dated 2024-08-23 and 0.7.6 dated 2024-09-04
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ R/custom_s3.R | 18 ++++++++++-------- 4 files changed, 20 insertions(+), 14 deletions(-)
Title: Univariate and Multivariate Tests for Multimodal and Other
Networks
Description: A set of tools for testing networks.
It includes functions for univariate and multivariate
conditional uniform graph and quadratic assignment procedure testing,
and network regression.
The package is a complement to
'Multimodal Political Networks' (2021, ISBN:9781108985000),
and includes various datasets used in the book.
Built on the 'manynet' package, all functions operate with matrices, edge lists,
and 'igraph', 'network', and 'tidygraph' objects,
and on one-mode and two-mode (bipartite) networks.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb] ,
Jael Tan [ctb] ,
Bernhard Bieri [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between migraph versions 1.4.1 dated 2024-07-19 and 1.4.2 dated 2024-09-04
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 13 +++++++++++++ R/model_tests.R | 2 +- build/partial.rdb |binary 5 files changed, 22 insertions(+), 9 deletions(-)
Title: Classical Age-Depth Modelling of Cores from Deposits
Description: Performs 'classical' age-depth modelling of dated sediment deposits - prior to applying more sophisticated techniques such as Bayesian age-depth modelling. Any radiocarbon dated depths are calibrated. Age-depth models are constructed by sampling repeatedly from the dated levels, each time drawing age-depth curves. Model types include linear interpolation, linear or polynomial regression, and a range of splines. See Blaauw (2010). <doi:10.1016/j.quageo.2010.01.002>.
Author: Maarten Blaauw [aut, cre] ,
J. Andres Christen [ctb] ,
Judith Esquivel Vazquez [ctb],
Simon Goring [ctb]
Maintainer: Maarten Blaauw <maarten.blaauw@qub.ac.uk>
Diff between clam versions 2.5.0 dated 2022-08-17 and 2.6.0 dated 2024-09-04
DESCRIPTION | 12 MD5 | 51 NAMESPACE | 5 NEWS.md | 3 R/calibrate.R | 4 R/ccurve.R |only R/clam-package.R |only R/clam.R | 16 R/plots.R | 2 R/readwrite.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION |only inst/doc/clam.R | 10 inst/doc/clam.Rmd | 4 inst/doc/clam.html | 45 man/ccurve.Rd |only man/clam-package.Rd |only man/clam.Rd | 6 vignettes/clam.Rmd | 4 vignettes/clam_runs/Example/Example_calibrated.txt | 2 vignettes/clam_runs/Example/Example_interpolated.pdf |binary vignettes/clam_runs/Example/Example_interpolated.png |binary vignettes/clam_runs/Example/Example_interpolated_ages.txt | 1348 ++++---- vignettes/clam_runs/Example/Example_interpolated_settings.txt | 4 vignettes/clam_runs/Example/Example_smooth_spline.pdf |binary vignettes/clam_runs/Example/Example_smooth_spline.png |binary vignettes/clam_runs/Example/Example_smooth_spline_ages.txt | 1542 +++++----- vignettes/clam_runs/Example/Example_smooth_spline_settings.txt | 4 29 files changed, 1534 insertions(+), 1530 deletions(-)
Title: Small Area Estimation using HB for Rao Yu Model under Beta
Distribution
Description: Several functions are provided for small area estimation at
the area level using the hierarchical bayesian (HB) method with panel
data under beta distribution for variable interest. This package also
provides a dataset produced by data generation. The 'rjags' package is
employed to obtain parameter estimates. Model-based estimators involve
the HB estimators, which include the mean and the variation of the
mean. For the reference, see Rao and Molina (2015, ISBN:
978-1-118-73578-7).
Author: Dian Rahmawati Salis [aut, cre],
Azka Ubaidillah [aut]
Maintainer: Dian Rahmawati Salis <dianrahmawatisalis03@gmail.com>
Diff between saeHB.panel.beta versions 0.1.3 dated 2023-07-04 and 0.1.5 dated 2024-09-04
DESCRIPTION | 8 - MD5 | 32 ++--- NAMESPACE | 22 ++-- NEWS.md | 2 R/Panel.beta.R | 258 +++++++++++++++++++++++------------------------ R/RaoYuAr1.beta.R | 58 ++++------ README.md | 135 ++++++------------------ build/vignette.rds |binary inst/doc/Panel.beta.R | 2 inst/doc/Panel.beta.html | 216 +++++++++++++++++++-------------------- man/Panel.beta.Rd | 141 ++++++++++++------------- man/RaoYuAr1.beta.Rd | 140 ++++++++++++------------- man/dataBetaAr1.Rd | 90 ++++++++-------- man/dataBetaAr1Ns.Rd | 54 ++++----- man/dataPanelbeta.Rd | 86 +++++++-------- man/dataPanelbetaNs.Rd | 54 ++++----- tests/testthat.R | 24 ++-- 17 files changed, 623 insertions(+), 699 deletions(-)
More information about saeHB.panel.beta at CRAN
Permanent link
Title: Kernel Functions and Tools for Machine Learning Applications
Description: Kernel functions for diverse types of data (including, but not
restricted to: nonnegative and real vectors, real matrices, categorical
and ordinal variables, sets, strings), plus other utilities like kernel
similarity, kernel Principal Components Analysis (PCA) and features'
importance for Support Vector Machines (SVMs), which expand other 'R'
packages like 'kernlab'.
Author: Elies Ramon [aut, cre, cph]
Maintainer: Elies Ramon <eramon@everlyrusher.com>
Diff between kerntools versions 1.0.1 dated 2024-08-27 and 1.0.2 dated 2024-09-04
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 4 ++++ README.md | 6 +++--- man/figures/README-example-1.png |binary tests/testthat/test-kernel_pca.R | 7 ++++--- 6 files changed, 19 insertions(+), 14 deletions(-)
Title: Facilitate Citation of R Packages
Description: Facilitates the citation of R packages used in analysis
projects. Scans project for packages used, gets their citations, and
produces a document with citations in the preferred bibliography
format, ready to be pasted into reports or manuscripts. Alternatively,
'grateful' can be used directly within an 'R Markdown' or 'Quarto' document.
Author: Francisco Rodriguez-Sanchez [aut, cre, cph]
,
Connor P. Jackson [aut] ,
Shaurita D. Hutchins [ctb],
James M. Clawson [ctb]
Maintainer: Francisco Rodriguez-Sanchez <f.rodriguez.sanc@gmail.com>
Diff between grateful versions 0.2.4 dated 2023-10-22 and 0.2.10 dated 2024-09-04
DESCRIPTION | 8 ++-- MD5 | 45 +++++++++++----------- NEWS.md | 23 +++++++++++ R/cite_packages.R | 22 +++++++---- R/create_rmd.R | 14 +++++-- R/get_citations.R | 20 ++++++---- R/get_csl.R | 2 - R/get_pkgs_info.R | 9 ++-- R/output_table.R | 10 ++++- R/render_citations.R | 18 +++++++-- R/write_citation_paragraph.R | 4 +- README.md | 65 ++++++++++++++++++++------------- inst/CITATION | 4 +- man/cite_packages.Rd | 12 ++++-- man/get_citations.Rd | 2 - man/get_pkgs_info.Rd | 3 + man/scan_packages.Rd | 3 + tests/testthat/test-cite_packages.R | 20 +++++++--- tests/testthat/test-create_rmd.R | 26 ++++++++++++- tests/testthat/test-get_citations.R | 2 - tests/testthat/test-get_pkgs_info.R | 12 ++++-- tests/testthat/test-installed_pkgs.R |only tests/testthat/test-render_citations.R | 10 +++++ tests/testthat/test-utils_citations.R | 2 - 24 files changed, 236 insertions(+), 100 deletions(-)
Title: Tidy Finance Helper Functions
Description: Helper functions for empirical research in financial
economics, addressing a variety of topics covered in Scheuch, Voigt,
and Weiss (2023) <doi:10.1201/b23237>. The package is designed to
provide shortcuts for issues extensively discussed in the book,
facilitating easier application of its concepts. For more information
and resources related to the book, visit
<https://www.tidy-finance.org/r/index.html>.
Author: Christoph Scheuch [aut, cre] ,
Stefan Voigt [aut] ,
Patrick Weiss [aut] ,
Maximilian Muecke [ctb]
Maintainer: Christoph Scheuch <christoph.scheuch@gmail.com>
Diff between tidyfinance versions 0.4.0 dated 2024-08-30 and 0.4.1 dated 2024-09-04
tidyfinance-0.4.0/tidyfinance/R/download_data_wrds_clean_trace.R |only tidyfinance-0.4.0/tidyfinance/man/download_data_wrds_clean_trace.Rd |only tidyfinance-0.4.1/tidyfinance/DESCRIPTION | 6 - tidyfinance-0.4.1/tidyfinance/MD5 | 38 +++++----- tidyfinance-0.4.1/tidyfinance/NAMESPACE | 2 tidyfinance-0.4.1/tidyfinance/NEWS.md | 12 +++ tidyfinance-0.4.1/tidyfinance/R/download_data.R | 8 +- tidyfinance-0.4.1/tidyfinance/R/download_data_wrds.R | 15 ++- tidyfinance-0.4.1/tidyfinance/R/download_data_wrds_trace_enhanced.R |only tidyfinance-0.4.1/tidyfinance/R/estimate_betas.R | 8 +- tidyfinance-0.4.1/tidyfinance/R/estimate_fama_macbeth.R | 15 ++- tidyfinance-0.4.1/tidyfinance/R/estimate_model.R | 15 +++ tidyfinance-0.4.1/tidyfinance/R/list_supported_types.R | 2 tidyfinance-0.4.1/tidyfinance/README.md | 2 tidyfinance-0.4.1/tidyfinance/inst/doc/dates-in-tidyfinance.html | 16 ++-- tidyfinance-0.4.1/tidyfinance/inst/doc/using-tidyfinance.html | 30 +++---- tidyfinance-0.4.1/tidyfinance/man/download_data_wrds.Rd | 6 + tidyfinance-0.4.1/tidyfinance/man/download_data_wrds_trace_enhanced.Rd |only tidyfinance-0.4.1/tidyfinance/man/estimate_fama_macbeth.Rd | 16 +++- tidyfinance-0.4.1/tidyfinance/man/estimate_model.Rd | 3 tidyfinance-0.4.1/tidyfinance/tests/testthat/test-estimate_fama_macbeth.R | 2 tidyfinance-0.4.1/tidyfinance/tests/testthat/test-estimate_model.R | 2 22 files changed, 132 insertions(+), 66 deletions(-)
Title: Functions that Apply to Rows and Columns of Matrices (and to
Vectors)
Description: High-performing functions operating on rows and columns of matrices, e.g. col / rowMedians(), col / rowRanks(), and col / rowSds(). Functions optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized. There are also optimized vector-based methods, e.g. binMeans(), madDiff() and weightedMedian().
Author: Henrik Bengtsson [aut, cre, cph],
Constantin Ahlmann-Eltze [ctb],
Hector Corrada Bravo [ctb],
Robert Gentleman [ctb],
Jan Gleixner [ctb],
Peter Hickey [ctb],
Ola Hossjer [ctb],
Harris Jaffee [ctb],
Dongcan Jiang [ctb],
Peter Langfelder [ctb],
Brian M [...truncated...]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between matrixStats versions 1.3.0 dated 2024-04-11 and 1.4.0 dated 2024-09-04
DESCRIPTION | 8 MD5 | 100 +++++----- NEWS.md | 28 ++ R/000.DEPRECATION.R | 4 R/options.R | 14 - R/rowWeightedMeans.R | 4 build/vignette.rds |binary inst/WORDLIST | 3 inst/doc/matrixStats-methods.html | 2 man/matrixStats.options.Rd | 12 - src/000.templates-types.h | 2 src/000.types.h | 24 ++ src/000.utils.h | 30 +-- src/allocMatrix2.c | 26 +- src/colCounts.c | 8 src/colCounts_lowlevel_template.h | 12 - src/colOrderStats.c | 4 src/colRanges.c | 4 src/colRanges_lowlevel_template.h | 6 src/diff2.c | 6 src/diff2_lowlevel_template.h | 35 +-- src/indexByRow.c | 4 src/logSumExp_lowlevel_template.h | 6 src/psortKM.c | 18 - src/rowCounts.c | 4 src/rowCounts_lowlevel_template.h | 12 - src/rowCumMinMaxs_lowlevel_template.h | 6 src/rowCumprods_lowlevel_template.h | 6 src/rowCumsums_lowlevel_template.h | 6 src/rowDiffs.c | 4 src/rowDiffs_lowlevel_template.h | 12 - src/rowMads.c | 2 src/rowMads_lowlevel_template.h | 2 src/rowMeans2_lowlevel_template.h | 4 src/rowMedians_lowlevel_template.h | 4 src/rowOrderStats.c | 4 src/rowRanges.c | 4 src/rowRanksWithTies.c | 304 ++----------------------------- src/rowRanksWithTies_lowlevel.h | 106 ---------- src/rowRanksWithTies_lowlevel_template.h | 221 ++++++++++++++-------- src/rowSums2.c | 17 - src/rowSums2_lowlevel_template.h | 181 ++++++++++-------- src/rowVars_lowlevel_template.h | 2 src/sum2.c | 2 src/validateIndices.c | 8 src/validateIndices_lowlevel_template.h | 6 src/weightedMedian_lowlevel_template.h | 44 ++-- src/x_OP_y_lowlevel_template.h | 16 - tests/binCounts.R | 4 tests/binMeans,binCounts.R | 4 tests/sum2.R | 2 51 files changed, 566 insertions(+), 781 deletions(-)
Title: Analyze Interconnection Structure of Multilayer Interaction
Networks
Description: In view of the analysis of the structural characteristics of the multilayer network has been complete, however, there is still a lack of a unified operation that can quickly obtain the corresponding characteristics of the multilayer network.
To solve this insufficiency, 'ILSM' was designed for supporting calculating such metrics of multilayer networks by functions of this R package.
Author: WeiCheng Sun [aut, cre],
Chuan Yan [aut],
Yangyang Zhao [aut]
Maintainer: WeiCheng Sun <sunwch2023@lzu.edu.cn>
Diff between ILSM versions 1.0.3.1 dated 2024-07-25 and 1.0.3.2 dated 2024-09-04
ILSM-1.0.3.1/ILSM/man/figure/conbine.png |only ILSM-1.0.3.2/ILSM/DESCRIPTION | 7 ILSM-1.0.3.2/ILSM/MD5 | 23 +-- ILSM-1.0.3.2/ILSM/NEWS.md | 14 + ILSM-1.0.3.2/ILSM/R/PPH_Coltparkmeadow.R |only ILSM-1.0.3.2/ILSM/R/icmotif_count.R | 184 +++++++++++------------- ILSM-1.0.3.2/ILSM/R/icmotif_role.R | 184 +++++++++++------------- ILSM-1.0.3.2/ILSM/README.md | 94 +++++------- ILSM-1.0.3.2/ILSM/data |only ILSM-1.0.3.2/ILSM/inst/doc/motif_guideline.R | 2 ILSM-1.0.3.2/ILSM/inst/doc/motif_guideline.Rmd | 6 ILSM-1.0.3.2/ILSM/inst/doc/motif_guideline.html | 17 +- ILSM-1.0.3.2/ILSM/man/PPH_Coltparkmeadow.Rd |only ILSM-1.0.3.2/ILSM/man/figure/combine.png |only ILSM-1.0.3.2/ILSM/vignettes/motif_guideline.Rmd | 6 15 files changed, 267 insertions(+), 270 deletions(-)
Title: Hidden Hybrid Markov/Semi-Markov Model Fitting
Description: Develops algorithms for fitting, prediction, simulation
and initialization of the following models
(1)- hidden hybrid Markov/semi-Markov model,
introduced by Guedon (2005) <doi:10.1016/j.csda.2004.05.033>,
(2)- nonparametric mixture of B-splines emissions (Langrock et al., 2015
<doi:10.1111/biom.12282>),
(3)- regime switching regression model
(Kim et al., 2008 <doi:10.1016/j.jeconom.2007.10.002>) and auto-regressive
hidden hybrid Markov/semi-Markov model,
(4)- spline-based nonparametric
estimation of additive state-switching models
(Langrock et al., 2018 <doi:10.1111/stan.12133>)
(5)- robust emission model proposed by
Qin et al, 2024 <doi:10.1007/s10479-024-05989-4>
(6)- several emission distributions, including mixture of multivariate normal
(which can also handle missing data using EM algorithm) and multi-nomial emission
(for modeling polymer or DNA sequences)
(7)- tools for prediction of future state sequence, computing the score of a new sequence,
spli [...truncated...]
Author: Morteza Amini [aut, cre, cph],
Afarin Bayat [aut],
Reza Salehian [aut]
Maintainer: Morteza Amini <morteza.amini@ut.ac.ir>
Diff between hhsmm versions 0.4.1 dated 2024-09-03 and 0.4.2 dated 2024-09-04
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/dmixlm.R | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Easily Convert GDP Data
Description: Convert GDP time series data from one unit to
another. All common GDP units are included, i.e. current and constant
local currency units, US$ via market exchange rates and international
dollars via purchasing power parities.
Author: Johannes Koch [aut, cre]
Maintainer: Johannes Koch <jokoch@pik-potsdam.de>
Diff between GDPuc versions 1.0.0 dated 2024-06-05 and 1.0.4 dated 2024-09-04
DESCRIPTION | 10 MD5 | 24 - NEWS.md | 5 R/check_user_input.R | 6 R/convertGDP.R | 9 R/transform_user_input.R | 18 inst/doc/handle_NAs.html | 474 +++++++++++++------------- inst/doc/source.html | 152 ++++---- inst/doc/verbose.html | 54 +- man/convertGDP.Rd | 2 tests/testthat/test-01_check_user_input.R | 5 tests/testthat/test-02_transform_user_input.R | 26 + tests/testthat/test-05_convertGDP.R | 20 - 13 files changed, 425 insertions(+), 380 deletions(-)
Title: Forensic Pedigree Analysis and Relatedness Inference
Description: Forensic applications of pedigree analysis, including
likelihood ratios for relationship testing, general relatedness
inference, marker simulation, and power analysis. 'forrel' is part of
the 'pedsuite', a collection of packages for pedigree analysis,
further described in the book 'Pedigree Analysis in R' (Vigeland,
2021, ISBN:9780128244302). Several functions deal specifically with
power analysis in missing person cases, implementing methods described
in Vigeland et al. (2020) <doi:10.1016/j.fsigen.2020.102376>. Data
import from the 'Familias' software (Egeland et al. (2000)
<doi:10.1016/S0379-0738(00)00147-X>) is supported through the
'pedFamilias' package.
Author: Magnus Dehli Vigeland [aut, cre]
,
Thore Egeland [ctb]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between forrel versions 1.6.1 dated 2023-11-19 and 1.7.0 dated 2024-09-04
forrel-1.6.1/forrel/R/IBDtriangle.R |only forrel-1.6.1/forrel/man/IBDtriangle.Rd |only forrel-1.7.0/forrel/DESCRIPTION | 15 forrel-1.7.0/forrel/MD5 | 76 +-- forrel-1.7.0/forrel/NAMESPACE | 25 - forrel-1.7.0/forrel/NEWS.md | 30 + forrel-1.7.0/forrel/R/LRpower.R | 28 - forrel-1.7.0/forrel/R/checkPairwise.R | 401 +++++++++++++++--- forrel-1.7.0/forrel/R/exclusionPower.R | 66 +- forrel-1.7.0/forrel/R/expectedLR.R | 9 forrel-1.7.0/forrel/R/familias-deprecated.R | 37 - forrel-1.7.0/forrel/R/forrel-package.R | 1 forrel-1.7.0/forrel/R/ibdBootstrap.R | 17 forrel-1.7.0/forrel/R/ibdEstimTools.R | 314 ++++++++------ forrel-1.7.0/forrel/R/ibdEstimate.R | 64 +- forrel-1.7.0/forrel/R/ibdLoglik.R |only forrel-1.7.0/forrel/R/kinshipLR.R | 4 forrel-1.7.0/forrel/R/markerSim.R | 19 forrel-1.7.0/forrel/R/missingPersonIP.R | 6 forrel-1.7.0/forrel/R/missingPersonPlot.R | 58 +- forrel-1.7.0/forrel/R/pairwiseSim.R | 4 forrel-1.7.0/forrel/R/profileSim.R | 28 - forrel-1.7.0/forrel/R/quickLR.R |only forrel-1.7.0/forrel/R/utils.R | 21 forrel-1.7.0/forrel/README.md | 28 - forrel-1.7.0/forrel/build/partial.rdb |binary forrel-1.7.0/forrel/man/LRpower.Rd | 14 forrel-1.7.0/forrel/man/checkPairwise.Rd | 97 +++- forrel-1.7.0/forrel/man/exclusionPower.Rd | 58 +- forrel-1.7.0/forrel/man/expectedLR.Rd | 9 forrel-1.7.0/forrel/man/familias.Rd | 17 forrel-1.7.0/forrel/man/figures/README-triangle-1.png |binary forrel-1.7.0/forrel/man/ibdEstimate.Rd | 8 forrel-1.7.0/forrel/man/ibdLoglik.Rd |only forrel-1.7.0/forrel/man/kinshipLR.Rd | 2 forrel-1.7.0/forrel/man/markerSim.Rd | 5 forrel-1.7.0/forrel/man/missingPersonPlot.Rd | 38 - forrel-1.7.0/forrel/man/quickLR.Rd |only forrel-1.7.0/forrel/man/showInTriangle.Rd | 2 forrel-1.7.0/forrel/tests/testthat/test-exclusion.R | 12 forrel-1.7.0/forrel/tests/testthat/test-kinshipLR.R | 2 forrel-1.7.0/forrel/tests/testthat/test-sims.R | 18 42 files changed, 950 insertions(+), 583 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-06-25 0.1.3
2024-01-20 0.1.2
2024-01-17 0.1.1
2024-01-13 0.1.0
Title: R Version of GENetic Optimization Using Derivatives
Description: A genetic algorithm plus derivative optimizer.
Author: Walter R. Mebane, Jr [aut],
Jasjeet Singh Sekhon [aut, cre],
Theo Saarinen [aut]
Maintainer: Jasjeet Singh Sekhon <jas.sekhon@yale.edu>
Diff between rgenoud versions 5.9-0.10 dated 2023-12-15 and 5.9-0.11 dated 2024-09-04
DESCRIPTION | 8 +-- MD5 | 18 +++---- src/eval.cpp | 44 ++++++++--------- src/evaluate.cpp | 130 +++++++++++++++++++++++++-------------------------- src/genoud.cpp | 4 - src/genoud.h | 1 src/math.cpp | 2 src/operators.cpp | 2 src/print_format.cpp | 2 src/rgenoud.cpp | 70 +++++++++++++-------------- 10 files changed, 141 insertions(+), 140 deletions(-)
Title: Applied Econometrics with R
Description: Functions, data sets, examples, demos, and vignettes for the book
Christian Kleiber and Achim Zeileis (2008),
Applied Econometrics with R, Springer-Verlag, New York.
ISBN 978-0-387-77316-2. <doi:10.1007/978-0-387-77318-6>
(See the vignette "AER" for a package overview.)
Author: Christian Kleiber [aut] ,
Achim Zeileis [aut, cre]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between AER versions 1.2-12 dated 2024-02-03 and 1.2-13 dated 2024-09-04
AER-1.2-12/AER/NEWS |only AER-1.2-13/AER/DESCRIPTION | 8 ++++---- AER-1.2-13/AER/MD5 | 22 +++++++++++----------- AER-1.2-13/AER/NEWS.md |only AER-1.2-13/AER/R/tobit.R | 15 ++++++++++++++- AER-1.2-13/AER/build/partial.rdb |binary AER-1.2-13/AER/build/vignette.rds |binary AER-1.2-13/AER/inst/CITATION | 2 +- AER-1.2-13/AER/inst/doc/AER.pdf |binary AER-1.2-13/AER/inst/doc/Sweave-journals.pdf |binary AER-1.2-13/AER/man/CPS1985.Rd | 2 +- AER-1.2-13/AER/tests/Ch-Intro.Rout.save | 15 ++++----------- AER-1.2-13/AER/tests/Ch-Validation.Rout.save | 15 ++++----------- 13 files changed, 39 insertions(+), 40 deletions(-)