Title: Analysis of Spatial Stratified Heterogeneity
Description: Analyzing spatial factors and exploring spatial associations based on the concept of spatial
stratified heterogeneity, and also takes into account local spatial dependencies, spatial
interpretability, potential spatial interactions, and robust spatial stratification. Additionally,
it supports geographical detector models established in academic literature.
Author: Wenbo Lv [aut, cre, cph] ,
Yangyang Lei [aut] ,
Yongze Song [aut] ,
Wufan Zhao [aut] ,
Jianwu Yan [aut]
Maintainer: Wenbo Lv <lyu.geosocial@gmail.com>
Diff between gdverse versions 1.0.0 dated 2024-09-09 and 1.0-1 dated 2024-09-15
gdverse-1.0-1/gdverse/DESCRIPTION | 15 gdverse-1.0-1/gdverse/MD5 | 147 +- gdverse-1.0-1/gdverse/NEWS.md | 89 - gdverse-1.0-1/gdverse/R/discretization.R | 7 gdverse-1.0-1/gdverse/R/gd.R | 3 gdverse-1.0-1/gdverse/R/geodetector.R | 1176 +++++++++--------- gdverse-1.0-1/gdverse/R/gozh.R | 3 gdverse-1.0-1/gdverse/R/idsa.R | 49 gdverse-1.0-1/gdverse/R/lesh.R | 3 gdverse-1.0-1/gdverse/R/loess.R | 194 +- gdverse-1.0-1/gdverse/R/opgd.R | 10 gdverse-1.0-1/gdverse/R/pid_idsa.R | 12 gdverse-1.0-1/gdverse/R/psd_pseudop.R | 55 gdverse-1.0-1/gdverse/R/psd_spade.R | 70 - gdverse-1.0-1/gdverse/R/rgd.R | 3 gdverse-1.0-1/gdverse/R/rid.R | 5 gdverse-1.0-1/gdverse/R/robustdisc.R | 108 - gdverse-1.0-1/gdverse/R/rpartdisc.R | 62 gdverse-1.0-1/gdverse/R/sesu_gozh.R | 350 ++--- gdverse-1.0-1/gdverse/R/sesu_opgd.R | 368 ++--- gdverse-1.0-1/gdverse/R/spade.R | 85 - gdverse-1.0-1/gdverse/R/spd_lesh.R | 366 ++--- gdverse-1.0-1/gdverse/R/srsgd.R | 507 +++---- gdverse-1.0-1/gdverse/R/utils_helper.R | 358 ++--- gdverse-1.0-1/gdverse/R/zzz.R | 8 gdverse-1.0-1/gdverse/README.md | 3 gdverse-1.0-1/gdverse/build/vignette.rds |binary gdverse-1.0-1/gdverse/inst/doc/gd.Rmd |only gdverse-1.0-1/gdverse/inst/doc/gd.html |only gdverse-1.0-1/gdverse/inst/doc/idsa.Rmd |only gdverse-1.0-1/gdverse/inst/doc/idsa.html |only gdverse-1.0-1/gdverse/inst/doc/opgd.Rmd |only gdverse-1.0-1/gdverse/inst/doc/opgd.html |only gdverse-1.0-1/gdverse/inst/doc/rgdrid.Rmd |only gdverse-1.0-1/gdverse/inst/doc/rgdrid.html |only gdverse-1.0-1/gdverse/inst/doc/sesu.Rmd |only gdverse-1.0-1/gdverse/inst/doc/sesu.html |only gdverse-1.0-1/gdverse/inst/doc/shegd.Rmd |only gdverse-1.0-1/gdverse/inst/doc/shegd.html |only gdverse-1.0-1/gdverse/inst/doc/spade.Rmd |only gdverse-1.0-1/gdverse/inst/doc/spade.html |only gdverse-1.0-1/gdverse/man/cpsd_disc.Rd | 10 gdverse-1.0-1/gdverse/man/figures/gd/gd_all-1.png |binary gdverse-1.0-1/gdverse/man/figures/gd/rd-1.png |binary gdverse-1.0-1/gdverse/man/figures/spade/XianSUHII.png |only gdverse-1.0-1/gdverse/man/gd.Rd | 2 gdverse-1.0-1/gdverse/man/gd_bestunidisc.Rd | 5 gdverse-1.0-1/gdverse/man/geodetector.Rd | 134 +- gdverse-1.0-1/gdverse/man/gozh.Rd | 2 gdverse-1.0-1/gdverse/man/idsa.Rd | 20 gdverse-1.0-1/gdverse/man/lesh.Rd | 2 gdverse-1.0-1/gdverse/man/opgd.Rd | 11 gdverse-1.0-1/gdverse/man/plot.gd_result.Rd | 44 gdverse-1.0-1/gdverse/man/print.gd_result.Rd | 44 gdverse-1.0-1/gdverse/man/psmd_pseudop.Rd | 33 gdverse-1.0-1/gdverse/man/psmd_spade.Rd | 28 gdverse-1.0-1/gdverse/man/rgd.Rd | 2 gdverse-1.0-1/gdverse/man/rid.Rd | 2 gdverse-1.0-1/gdverse/man/spade.Rd | 35 gdverse-1.0-1/gdverse/vignettes/gd.Rmd |only gdverse-1.0-1/gdverse/vignettes/gd.Rmd.orig |only gdverse-1.0-1/gdverse/vignettes/idsa.Rmd |only gdverse-1.0-1/gdverse/vignettes/idsa.Rmd.orig |only gdverse-1.0-1/gdverse/vignettes/opgd.Rmd |only gdverse-1.0-1/gdverse/vignettes/opgd.Rmd.orig |only gdverse-1.0-1/gdverse/vignettes/precompile.R | 28 gdverse-1.0-1/gdverse/vignettes/rgdrid.Rmd |only gdverse-1.0-1/gdverse/vignettes/rgdrid.Rmd.orig |only gdverse-1.0-1/gdverse/vignettes/sesu.Rmd |only gdverse-1.0-1/gdverse/vignettes/sesu.Rmd.orig |only gdverse-1.0-1/gdverse/vignettes/shegd.Rmd |only gdverse-1.0-1/gdverse/vignettes/shegd.Rmd.orig |only gdverse-1.0-1/gdverse/vignettes/spade.Rmd |only gdverse-1.0-1/gdverse/vignettes/spade.Rmd.orig |only gdverse-1.0.0/gdverse/inst/doc/GD.Rmd |only gdverse-1.0.0/gdverse/inst/doc/GD.html |only gdverse-1.0.0/gdverse/inst/doc/IDSA.Rmd |only gdverse-1.0.0/gdverse/inst/doc/IDSA.html |only gdverse-1.0.0/gdverse/inst/doc/OPGD.Rmd |only gdverse-1.0.0/gdverse/inst/doc/OPGD.html |only gdverse-1.0.0/gdverse/inst/doc/RGDRID.Rmd |only gdverse-1.0.0/gdverse/inst/doc/RGDRID.html |only gdverse-1.0.0/gdverse/inst/doc/SESU.Rmd |only gdverse-1.0.0/gdverse/inst/doc/SESU.html |only gdverse-1.0.0/gdverse/inst/doc/SHEGD.Rmd |only gdverse-1.0.0/gdverse/inst/doc/SHEGD.html |only gdverse-1.0.0/gdverse/inst/doc/SPADE.Rmd |only gdverse-1.0.0/gdverse/inst/doc/SPADE.html |only gdverse-1.0.0/gdverse/inst/python/__pycache__ |only gdverse-1.0.0/gdverse/man/figures/spade/studyarea.png |only gdverse-1.0.0/gdverse/vignettes/GD.Rmd |only gdverse-1.0.0/gdverse/vignettes/GD.Rmd.orig |only gdverse-1.0.0/gdverse/vignettes/IDSA.Rmd |only gdverse-1.0.0/gdverse/vignettes/IDSA.Rmd.orig |only gdverse-1.0.0/gdverse/vignettes/OPGD.Rmd |only gdverse-1.0.0/gdverse/vignettes/OPGD.Rmd.orig |only gdverse-1.0.0/gdverse/vignettes/RGDRID.Rmd |only gdverse-1.0.0/gdverse/vignettes/RGDRID.Rmd.orig |only gdverse-1.0.0/gdverse/vignettes/SESU.Rmd |only gdverse-1.0.0/gdverse/vignettes/SESU.Rmd.orig |only gdverse-1.0.0/gdverse/vignettes/SHEGD.Rmd |only gdverse-1.0.0/gdverse/vignettes/SHEGD.Rmd.orig |only gdverse-1.0.0/gdverse/vignettes/SPADE.Rmd |only gdverse-1.0.0/gdverse/vignettes/SPADE.Rmd.orig |only 104 files changed, 2173 insertions(+), 2285 deletions(-)
Title: Hierarchical Partitioning of Marginal R2 for Generalized
Mixed-Effect Models
Description: Conducts hierarchical partitioning to calculate individual contributions of each predictor (fixed effects) towards marginal R2 for generalized linear mixed-effect model (including lm, glm and glmm) based on output of r.squaredGLMM() in 'MuMIn', applying the algorithm of Lai J.,Zou Y., Zhang S.,Zhang X.,Mao L.(2022)glmm.hp: an R package for computing individual effect of predictors in generalized linear mixed models.Journal of Plant Ecology,15(6)1302-1307<doi:10.1093/jpe/rtac096>.
Author: Jiangshan Lai [aut, cre] ,
Kim Nimon [aut]
Maintainer: Jiangshan Lai <lai@njfu.edu.cn>
Diff between glmm.hp versions 0.1-4 dated 2024-08-24 and 0.1-5 dated 2024-09-15
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- R/glmm.hp.r | 17 ++++++++++++++++- 3 files changed, 23 insertions(+), 8 deletions(-)
Title: Time-Ordered and Time-Aggregated Network Analyses
Description: Approaches for incorporating time into network analysis. Methods include: construction of time-ordered networks (temporal graphs); shortest-time and shortest-path-length analyses; resource spread calculations; data resampling and rarefaction for null model construction; reduction to time-aggregated networks with variable window sizes; application of common descriptive statistics to these networks; vector clock latencies; and plotting functionalities. The package supports <doi:10.1371/journal.pone.0020298>.
Author: Benjamin Wong Blonder [aut, cre]
Maintainer: Benjamin Wong Blonder <benjamin.blonder@berkeley.edu>
Diff between timeordered versions 1.0.0 dated 2023-08-20 and 1.0.1 dated 2024-09-15
DESCRIPTION | 18 ++++++++++-------- MD5 | 34 +++++++++++++++++----------------- R/generatelatencies.R | 2 +- R/generatetonetwork.R | 2 +- man/applynetworkfunction.Rd | 2 +- man/generatelatencies.Rd | 2 +- man/generatenetworkslices.Rd | 2 +- man/generatetimeaggregatednetwork.Rd | 2 +- man/generatetonetwork.Rd | 2 +- man/plotnetworkslices.Rd | 2 +- man/plottanet.Rd | 2 +- man/plottonet.Rd | 2 +- man/randomizeidentities.Rd | 2 +- man/randomizetimes.Rd | 2 +- man/shortesthoppath.Rd | 2 +- man/shortesttimepath.Rd | 2 +- man/spreadanalysis.Rd | 2 +- man/transformspreadbyindividual.Rd | 2 +- 18 files changed, 43 insertions(+), 41 deletions(-)
Title: 'Rcpp' Bindings to 'FastAD' Auto-Differentiation
Description: The header-only 'C++' template library 'FastAD' for automatic
differentiation <https://github.com/JamesYang007/FastAD> is provided by
this package, along with a few illustrative examples that can all be called
from R.
Author: Dirk Eddelbuettel [aut, cre] ,
James Yang [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppFastAD versions 0.0.2 dated 2023-03-06 and 0.0.3 dated 2024-09-15
ChangeLog | 16 ++++++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- README.md | 10 ++++++++-- build/partial.rdb |binary inst/NEWS.Rd | 11 ++++++++++- src/Makevars | 2 +- src/Makevars.win | 2 +- 8 files changed, 47 insertions(+), 16 deletions(-)
Title: Generalized Latent Markov Models
Description: Latent Markov models for longitudinal continuous and categorical data. See Bartolucci, Pandolfi, Pennoni (2017)<doi:10.18637/jss.v081.i04>.
Author: Francesco Bartolucci [aut, cre],
Silvia Pandolfi [aut],
Fulvia Pennoni [aut],
Alessio Farcomeni [ctb],
Alessio Serafini [ctb]
Maintainer: Francesco Bartolucci <francesco.bartolucci@unipg.it>
Diff between LMest versions 3.2.1 dated 2024-09-09 and 3.2.2 dated 2024-09-15
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/lmbasic.R | 3 +-- R/lmcovmanifest.cont.R | 4 +++- R/lmestCont.R | 4 +++- R/lmestSearch.R | 8 ++++---- data/data_heart_sim.rda |binary inst/doc/vignetteLMest.html | 8 ++++---- man/data_heart_sim.Rd | 4 ++-- 9 files changed, 29 insertions(+), 26 deletions(-)
Title: Tools for the Analysis of Epidemiological Data
Description: Tools for the analysis of epidemiological and surveillance data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on the basis of single or multiple strata of count data presented in a contingency table, computation of confidence intervals around incidence risk and incidence rate estimates and sample size calculations for cross-sectional, case-control and cohort studies. Surveillance tools include functions to calculate an appropriate sample size for 1- and 2-stage representative freedom surveys, functions to estimate surveillance system sensitivity and functions to support scenario tree modelling analyses.
Author: Mark Stevenson [aut, cre] ,
Evan Sergeant [aut],
Cord Heuer [ctb],
Telmo Nunes [ctb],
Cord Heuer [ctb],
Jonathon Marshall [ctb],
Javier Sanchez [ctb],
Ron Thornton [ctb],
Jeno Reiczigel [ctb],
Jim Robison-Cox [ctb],
Paola Sebastiani [ctb],
Peter Soly [...truncated...]
Maintainer: Mark Stevenson <mark.stevenson1@unimelb.edu.au>
Diff between epiR versions 2.0.75 dated 2024-06-17 and 2.0.76 dated 2024-09-15
DESCRIPTION | 14 +- MD5 | 44 +++--- NEWS | 7 + R/epi.2by2.R | 20 ++ R/epi.ccc.R | 7 - build/vignette.rds |binary inst/doc/epiR_descriptive.R | 28 ++-- inst/doc/epiR_descriptive.Rmd | 43 +++--- inst/doc/epiR_descriptive.html | 113 ++++++++-------- inst/doc/epiR_measures_of_association.R | 29 ++-- inst/doc/epiR_measures_of_association.Rmd | 75 +++++----- inst/doc/epiR_measures_of_association.html | 201 +++++++++++++++-------------- inst/doc/epiR_sample_size.Rmd | 8 - inst/doc/epiR_sample_size.html | 40 ++--- inst/doc/epiR_surveillance.R | 20 ++ inst/doc/epiR_surveillance.Rmd | 38 +++-- inst/doc/epiR_surveillance.html | 116 ++++++++-------- vignettes/epiR_descriptive.Rmd | 43 +++--- vignettes/epiR_descriptive.bib | 10 + vignettes/epiR_measures_of_association.Rmd | 75 +++++----- vignettes/epiR_sample_size.Rmd | 8 - vignettes/epiR_surveillance.Rmd | 38 +++-- vignettes/epiR_surveillance.bib | 2 23 files changed, 536 insertions(+), 443 deletions(-)
Title: Robust Covariance Matrix Estimators
Description: Object-oriented software for model-robust covariance matrix estimators. Starting out from the basic
robust Eicker-Huber-White sandwich covariance methods include: heteroscedasticity-consistent (HC)
covariances for cross-section data; heteroscedasticity- and autocorrelation-consistent (HAC)
covariances for time series data (such as Andrews' kernel HAC, Newey-West, and WEAVE estimators);
clustered covariances (one-way and multi-way); panel and panel-corrected covariances;
outer-product-of-gradients covariances; and (clustered) bootstrap covariances. All methods are
applicable to (generalized) linear model objects fitted by lm() and glm() but can also be adapted
to other classes through S3 methods. Details can be found in Zeileis et al. (2020) <doi:10.18637/jss.v095.i01>,
Zeileis (2004) <doi:10.18637/jss.v011.i10> and Zeileis (2006) <doi:10.18637/jss.v016.i09>.
Author: Achim Zeileis [aut, cre] ,
Thomas Lumley [aut] ,
Nathaniel Graham [ctb] ,
Susanne Koell [ctb]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between sandwich versions 3.1-0 dated 2023-12-11 and 3.1-1 dated 2024-09-15
DESCRIPTION | 8 ++++---- MD5 | 28 ++++++++++++++-------------- NEWS.md | 14 ++++++++++++++ R/bread.R | 2 +- R/vcovCL.R | 4 ++-- R/vcovHC.R | 22 ++++++++++++++-------- R/vcovPL.R | 13 ++++++++++--- build/partial.rdb |binary build/vignette.rds |binary inst/doc/sandwich-CL.pdf |binary inst/doc/sandwich-OOP.pdf |binary inst/doc/sandwich.pdf |binary man/vcovCL.Rd | 4 ++-- tests/Examples/sandwich-Ex.Rout.save | 8 ++++---- vignettes/sandwich-CL.Rout.save | 10 +++++----- 15 files changed, 70 insertions(+), 43 deletions(-)
Title: Gene Locus Plot with Gene Annotations
Description: Publication-ready regional gene locus plots similar to those produced by the web interface 'LocusZoom' <https://my.locuszoom.org>, but running locally in R. Genetic or genomic data with gene annotation tracks are plotted via R base graphics, 'ggplot2' or 'plotly', allowing flexibility and easy customisation including laying out multiple locus plots on the same page. It uses the 'LDlink' API <https://ldlink.nih.gov/?tab=apiaccess> to query linkage disequilibrium data from the 1000 Genomes Project and can overlay this on plots.
Author: Myles Lewis [aut, cre]
Maintainer: Myles Lewis <myles.lewis@qmul.ac.uk>
Diff between locuszoomr versions 0.3.4 dated 2024-09-06 and 0.3.5 dated 2024-09-15
DESCRIPTION | 6 +++--- MD5 | 15 ++++++++------- NEWS.md | 4 ++++ build/vignette.rds |binary inst/doc/locuszoomr.R | 15 ++++++++------- inst/doc/locuszoomr.Rmd | 9 +++++---- inst/doc/locuszoomr.html | 13 ++++--------- vignettes/locuszoomr.Rmd | 9 +++++---- vignettes/recomb.png |only 9 files changed, 37 insertions(+), 34 deletions(-)
More information about spectralAnomaly at CRAN
Permanent link
More information about PytrendsLongitudinalR at CRAN
Permanent link
Title: Partial Least Squares and Principal Component Regression
Description: Multivariate regression methods
Partial Least Squares Regression (PLSR), Principal Component
Regression (PCR) and Canonical Powered Partial Least Squares (CPPLS).
Author: Kristian Hovde Liland [aut, cre],
Bjoern-Helge Mevik [aut],
Ron Wehrens [aut],
Paul Hiemstra [ctb]
Maintainer: Kristian Hovde Liland <kristian.liland@nmbu.no>
Diff between pls versions 2.8-4 dated 2024-08-01 and 2.8-5 dated 2024-09-15
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- R/plots.R | 2 +- inst/NEWS.Rd | 8 ++++++++ inst/doc/pls-manual.pdf |binary 5 files changed, 18 insertions(+), 10 deletions(-)
More information about CohortGenerator at CRAN
Permanent link
Title: Minimization Methods for Ill-Conditioned Problems
Description: Implementation of methods for minimizing ill-conditioned problems. Currently only includes regularized (quasi-)newton optimization (Kanzow and Steck et al. (2023), <doi:10.1007/s12532-023-00238-4>).
Author: Bert van der Veen [aut, cre]
Maintainer: Bert van der Veen <bert_van_der_veen@hotmail.com>
Diff between minic versions 1.0 dated 2024-06-24 and 1.0.1 dated 2024-09-15
DESCRIPTION | 8 ++++---- MD5 | 15 ++++++++------- NEWS.md |only R/RcppExports.R | 4 ++-- R/print.rnewton.R | 2 +- R/rnewton.R | 12 +++++++----- man/rnewton.Rd | 7 ++++--- src/RcppExports.cpp | 9 +++++---- src/minic.cpp | 15 +++++++++++++-- 9 files changed, 44 insertions(+), 28 deletions(-)
More information about lavaan.printer at CRAN
Permanent link
Title: Using CF-Compliant Calendars with Climate Projection Data
Description: Support for all calendars as specified in the Climate and Forecast
(CF) Metadata Conventions for climate and forecasting data. The CF Metadata
Conventions is widely used for distributing files with climate observations
or projections, including the Coupled Model Intercomparison Project (CMIP)
data used by climate change scientists and the Intergovernmental Panel on
Climate Change (IPCC). This package specifically allows the user to work
with any of the CF-compliant calendars (many of which are not compliant with
POSIXt). The CF time coordinate is formally defined in the CF Metadata
Conventions document available at <https://cfconventions.org/Data/cf-conventions/cf-conventions-1.11/cf-conventions.html#time-coordinate>.
Author: Patrick Van Laake [aut, cre, cph]
Maintainer: Patrick Van Laake <patrick@vanlaake.net>
Diff between CFtime versions 1.4.0 dated 2024-06-05 and 1.4.1 dated 2024-09-15
DESCRIPTION | 8 MD5 | 24 +- NEWS.md | 12 + R/CFformat.R | 12 - R/CFparse.R | 2 R/CFtime.R | 33 ++- TODO | 8 build/vignette.rds |binary inst/doc/CFtime.html | 332 +++++++++++++++++++-------------------- inst/doc/Processing.html | 220 ++++++++++++------------- man/indexOf-ANY-CFtime-method.Rd | 12 - man/slab.Rd | 5 tests/testthat/test-CFbounds.R | 2 13 files changed, 352 insertions(+), 318 deletions(-)
Title: Helper Functions to Install and Maintain TeX Live, and Compile
LaTeX Documents
Description: Helper functions to install and maintain the 'LaTeX' distribution
named 'TinyTeX' (<https://yihui.org/tinytex/>), a lightweight, cross-platform,
portable, and easy-to-maintain version of 'TeX Live'. This package also
contains helper functions to compile 'LaTeX' documents, and install missing
'LaTeX' packages automatically.
Author: Yihui Xie [aut, cre, cph] ,
Posit Software, PBC [cph, fnd],
Christophe Dervieux [ctb] ,
Devon Ryan [ctb] ,
Ethan Heinzen [ctb],
Fernando Cagua [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between tinytex versions 0.52 dated 2024-07-18 and 0.53 dated 2024-09-15
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/latex.R | 4 +++- tests/test-cran/test-latex.R | 1 + 4 files changed, 10 insertions(+), 7 deletions(-)
Title: Mixture of Multiple Highly Variable Feature Selection Methods
Description: Highly variable gene selection methods, including popular public available methods, and also the mixture of multiple highly variable gene selection methods, <https://github.com/RuzhangZhao/mixhvg>. Reference: <doi:10.1101/2024.08.25.608519>.
Author: Ruzhang Zhao [aut, cre] ,
Hongkai Ji [aut]
Maintainer: Ruzhang Zhao <ruzhangzhao@gmail.com>
Diff between mixhvg versions 0.2.1 dated 2024-09-01 and 1.0.1 dated 2024-09-15
mixhvg-0.2.1/mixhvg/README.md |only mixhvg-1.0.1/mixhvg/DESCRIPTION | 6 +-- mixhvg-1.0.1/mixhvg/MD5 | 12 ++++-- mixhvg-1.0.1/mixhvg/R/FindVariableFeaturesMix.R | 46 +++++++++++++++++++++--- mixhvg-1.0.1/mixhvg/man/figures |only 5 files changed, 54 insertions(+), 10 deletions(-)
Title: Statistical Toolbox for Radiometric Geochronology
Description: Plots U-Pb data on Wetherill and Tera-Wasserburg concordia diagrams. Calculates concordia and discordia ages. Performs linear regression of measurements with correlated errors using 'York', 'Titterington', 'Ludwig' and Omnivariant Generalised Least-Squares ('OGLS') approaches. Generates Kernel Density Estimates (KDEs) and Cumulative Age Distributions (CADs). Produces Multidimensional Scaling (MDS) configurations and Shepard plots of multi-sample detrital datasets using the Kolmogorov-Smirnov distance as a dissimilarity measure. Calculates 40Ar/39Ar ages, isochrons, and age spectra. Computes weighted means accounting for overdispersion. Calculates U-Th-He (single grain and central) ages, logratio plots and ternary diagrams. Processes fission track data using the external detector method and LA-ICP-MS, calculates central ages and plots fission track and other data on radial (a.k.a. 'Galbraith') plots. Constructs total Pb-U, Pb-Pb, Th-Pb, K-Ca, Re-Os, Sm-Nd, Lu-Hf, Rb-Sr and 230Th-U isoch [...truncated...]
Author: Pieter Vermeesch [aut, cre]
Maintainer: Pieter Vermeesch <p.vermeesch@ucl.ac.uk>
Diff between IsoplotR versions 6.2 dated 2024-05-04 and 6.3 dated 2024-09-15
DESCRIPTION | 10 +-- MD5 | 36 ++++++------ R/bayes.R | 9 +-- R/ci.R | 5 + R/commonPb.R | 2 R/concordia.R | 14 ++-- R/discordia.R | 3 - R/diseq.R | 21 +++++++ R/errorellipse.R | 22 +++++-- R/flipper.R | 11 ++- R/isochron.R | 23 +++++++ R/kde.R | 164 +++++++++++++++++++++++++++---------------------------- R/ludwig.R | 14 ++-- R/radialplot.R | 9 --- R/toolbox.R | 6 -- man/Pb0corr.Rd | 2 man/concordia.Rd | 8 +- man/isochron.Rd | 7 +- man/kde.Rd | 2 19 files changed, 204 insertions(+), 164 deletions(-)
Title: Custom 'xaringan' CSS Themes
Description: Create beautifully color-coordinated and customized themes
for your 'xaringan' slides, without writing any CSS. Complete your
slide theme with 'ggplot2' themes that match the font and colors used
in your slides. Customized styles can be created directly in your
slides' 'R Markdown' source file or in a separate external script.
Author: Garrick Aden-Buie [aut, cre]
Maintainer: Garrick Aden-Buie <garrick@adenbuie.com>
Diff between xaringanthemer versions 0.4.2 dated 2022-08-20 and 0.4.3 dated 2024-09-15
xaringanthemer-0.4.2/xaringanthemer/inst/rmarkdown/templates/xaringanthemer/skeleton/xaringan-themer.css |only xaringanthemer-0.4.2/xaringanthemer/tests/manual |only xaringanthemer-0.4.3/xaringanthemer/DESCRIPTION | 8 xaringanthemer-0.4.3/xaringanthemer/MD5 | 79 +- xaringanthemer-0.4.3/xaringanthemer/NAMESPACE | 2 xaringanthemer-0.4.3/xaringanthemer/NEWS.md | 44 - xaringanthemer-0.4.3/xaringanthemer/R/ggplot2.R | 1 xaringanthemer-0.4.3/xaringanthemer/R/style_extra_css.R | 2 xaringanthemer-0.4.3/xaringanthemer/R/style_font_default.R | 3 xaringanthemer-0.4.3/xaringanthemer/R/utils.R | 3 xaringanthemer-0.4.3/xaringanthemer/R/xaringanthemer-package.R | 56 - xaringanthemer-0.4.3/xaringanthemer/README.md | 4 xaringanthemer-0.4.3/xaringanthemer/build/vignette.rds |binary xaringanthemer-0.4.3/xaringanthemer/inst/doc/ggplot2-themes.R | 14 xaringanthemer-0.4.3/xaringanthemer/inst/doc/ggplot2-themes.Rmd | 14 xaringanthemer-0.4.3/xaringanthemer/inst/doc/ggplot2-themes.html | 321 ++++----- xaringanthemer-0.4.3/xaringanthemer/inst/doc/template-variables.html | 26 xaringanthemer-0.4.3/xaringanthemer/inst/doc/xaringanthemer.R | 2 xaringanthemer-0.4.3/xaringanthemer/inst/doc/xaringanthemer.html | 326 +++++----- xaringanthemer-0.4.3/xaringanthemer/man/fragments/_thanks.Rmd | 6 xaringanthemer-0.4.3/xaringanthemer/man/style_duo.Rd | 8 xaringanthemer-0.4.3/xaringanthemer/man/style_duo_accent.Rd | 8 xaringanthemer-0.4.3/xaringanthemer/man/style_duo_accent_inverse.Rd | 8 xaringanthemer-0.4.3/xaringanthemer/man/style_mono_accent.Rd | 4 xaringanthemer-0.4.3/xaringanthemer/man/style_mono_accent_inverse.Rd | 4 xaringanthemer-0.4.3/xaringanthemer/man/style_mono_dark.Rd | 8 xaringanthemer-0.4.3/xaringanthemer/man/style_mono_light.Rd | 8 xaringanthemer-0.4.3/xaringanthemer/man/style_solarized_dark.Rd | 6 xaringanthemer-0.4.3/xaringanthemer/man/style_solarized_light.Rd | 6 xaringanthemer-0.4.3/xaringanthemer/man/style_xaringan.Rd | 6 xaringanthemer-0.4.3/xaringanthemer/man/theme_xaringan_base.Rd | 4 xaringanthemer-0.4.3/xaringanthemer/man/theme_xaringan_inverse.Rd | 4 xaringanthemer-0.4.3/xaringanthemer/man/theme_xaringan_set_defaults.Rd | 4 xaringanthemer-0.4.3/xaringanthemer/tests/testthat/_snaps/utils.md | 17 xaringanthemer-0.4.3/xaringanthemer/tests/testthat/test-ggplot2.R | 2 xaringanthemer-0.4.3/xaringanthemer/tests/testthat/test-helpers.R | 1 xaringanthemer-0.4.3/xaringanthemer/tests/testthat/test-style_xaringan.R | 1 xaringanthemer-0.4.3/xaringanthemer/tests/testthat/test-themes.R | 1 xaringanthemer-0.4.3/xaringanthemer/vignettes/ggplot2-themes.Rmd | 14 39 files changed, 504 insertions(+), 521 deletions(-)
More information about xaringanthemer at CRAN
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Title: Explanation Groves
Description: Compute surrogate explanation groves for predictive machine learning models and analyze complexity vs. explanatory power of an explanation according to Szepannek, G. and von Holt, B. (2023) <doi:10.1007/s41237-023-00205-2>.
Author: Gero Szepannek [aut, cre]
Maintainer: Gero Szepannek <gero.szepannek@web.de>
Diff between xgrove versions 0.1-11 dated 2024-08-23 and 0.1-12 dated 2024-09-15
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS | 2 ++ R/xgrove.R | 5 +++++ 4 files changed, 14 insertions(+), 7 deletions(-)
Title: Tidy Data and 'Geoms' for Bayesian Models
Description: Compose data for and extract, manipulate, and visualize posterior draws from Bayesian models
('JAGS', 'Stan', 'rstanarm', 'brms', 'MCMCglmm', 'coda', ...) in a tidy data format. Functions are provided
to help extract tidy data frames of draws from Bayesian models and that generate point
summaries and intervals in a tidy format. In addition, 'ggplot2' 'geoms' and 'stats' are provided for
common visualization primitives like points with multiple uncertainty intervals, eye plots (intervals plus
densities), and fit curves with multiple, arbitrary uncertainty bands.
Author: Matthew Kay [aut, cre],
Timothy Mastny [ctb]
Maintainer: Matthew Kay <mjskay@northwestern.edu>
Diff between tidybayes versions 3.0.6 dated 2023-08-12 and 3.0.7 dated 2024-09-15
DESCRIPTION | 18 MD5 | 270 NAMESPACE | 961 - NEWS.md | 517 R/add_draws.R | 198 R/compare_levels.R | 442 R/compose_data.R | 770 R/density_bins.R | 194 R/deprecated.R | 2164 +- R/emmeans_comparison.R | 162 R/epred_draws.R | 164 R/epred_rvars.R | 156 R/flip_aes.R | 101 R/gather_draws.R | 75 R/gather_emmeans_draws.R | 276 R/gather_pairs.R | 290 R/gather_rvars.R | 90 R/gather_variables.R | 204 R/get_variables.R | 106 R/ggdist-curve_interval.R | 6 R/ggdist-cut_cdf_qi.R | 6 R/ggdist-stat_pointinterval.R | 14 R/linpred_draws.R | 216 R/linpred_rvars.R | 156 R/nest_rvars.R | 175 R/predict_curve.R | 258 R/predicted_draws.R | 800 - R/predicted_rvars.R | 512 R/recover_types.R | 364 R/residual_draws.R | 128 R/sample_draws.R | 132 R/spread_draws.R | 1399 - R/spread_rvars.R | 564 R/summarise_draws.R | 152 R/testthat.R | 39 R/tidy_draws.R | 584 R/tidybayes-models.R | 158 R/tidybayes-package.R | 73 R/ungather_draws.R | 146 R/unspread_draws.R | 230 R/util.R | 358 R/x_at_y.R | 174 build/partial.rdb |binary build/vignette.rds |binary inst/doc/tidy-brms.R | 1228 - inst/doc/tidy-brms.Rmd | 1892 +- inst/doc/tidy-brms.html | 5674 +++---- inst/doc/tidy-posterior.R | 926 - inst/doc/tidy-posterior.Rmd | 1632 +- inst/doc/tidy-posterior.html | 2834 +-- inst/doc/tidy-rstanarm.R | 710 inst/doc/tidy-rstanarm.Rmd | 1278 - inst/doc/tidy-rstanarm.html | 5162 +++--- inst/doc/tidybayes-residuals.R | 892 - inst/doc/tidybayes-residuals.Rmd | 1440 - inst/doc/tidybayes-residuals.html | 2294 +- inst/doc/tidybayes.R | 764 inst/doc/tidybayes.Rmd | 1594 +- inst/doc/tidybayes.html | 7967 ++++------ man/add_draws.Rd | 146 man/add_predicted_draws.Rd | 870 - man/add_predicted_rvars.Rd | 752 man/compare_levels.Rd | 274 man/compose_data.Rd | 212 man/density_bins.Rd | 166 man/emmeans_comparison.Rd | 138 man/gather_emmeans_draws.Rd | 194 man/gather_pairs.Rd | 232 man/nest_rvars.Rd | 120 man/predict_curve.Rd | 202 man/recover_types.Rd | 262 man/reexports.Rd | 288 man/sample_draws.Rd | 122 man/spread_draws.Rd | 526 man/spread_rvars.Rd | 308 man/summarise_draws.grouped_df.Rd | 160 man/tidy_draws.Rd | 210 man/tidybayes-deprecated.Rd | 522 man/tidybayes-models.Rd | 152 man/tidybayes-package.Rd | 86 man/unspread_draws.Rd | 169 tests/testthat/_snaps/test.geom_dotsinterval/stat-dotsh-with-a-group-with-1-dot.svg | 198 tests/testthat/_snaps/test.geom_dotsinterval/vanilla-geom-dotsh.svg | 182 tests/testthat/_snaps/test.geom_interval/grouped-intervals-h-stat.svg | 146 tests/testthat/_snaps/test.geom_interval/grouped-intervals-h.svg | 144 tests/testthat/_snaps/test.geom_pointinterval/grouped-pointintervals-h-stat.svg | 134 tests/testthat/_snaps/test.geom_pointinterval/grouped-pointintervals-h.svg | 178 tests/testthat/_snaps/test.stat_dist_slabinterval/ccdfintervalh-using-args.svg | 118 tests/testthat/_snaps/test.stat_dist_slabinterval/horizontal-half-eye-using-args.svg | 118 tests/testthat/_snaps/test.stat_eye/one-parameter-horizontal-eye-mode-hdi.svg | 116 tests/testthat/_snaps/test.stat_eye/one-parameter-horizontal-eye.svg | 116 tests/testthat/_snaps/test.stat_eye/one-parameter-horizontal-half-eye.svg | 116 tests/testthat/_snaps/test.stat_eye/one-parameter-vertical-eye.svg | 116 tests/testthat/_snaps/test.stat_eye/one-parameter-vertical-halfeye.svg | 116 tests/testthat/_snaps/test.stat_eye/two-parameter-factor-horizontal-eye-fill.svg | 130 tests/testthat/_snaps/test.stat_eye/two-parameter-factor-horizontal-half-eye.svg | 114 tests/testthat/test.add_draws.R | 118 tests/testthat/test.as_constructor.R | 90 tests/testthat/test.combine_chains.R | 76 tests/testthat/test.compare_levels.R | 532 tests/testthat/test.compose_data.R | 264 tests/testthat/test.emmeans_comparison.R | 52 tests/testthat/test.epred_draws.R | 766 tests/testthat/test.epred_rvars.R | 454 tests/testthat/test.gather_draws.R | 114 tests/testthat/test.gather_emmeans_draws.R | 158 tests/testthat/test.gather_pairs.R | 110 tests/testthat/test.gather_rvars.R | 176 tests/testthat/test.gather_variables.R | 86 tests/testthat/test.geom_dotsinterval.R | 60 tests/testthat/test.geom_interval.R | 72 tests/testthat/test.geom_pointinterval.R | 70 tests/testthat/test.get_variables.R | 70 tests/testthat/test.linpred_draws.R | 460 tests/testthat/test.linpred_rvars.R | 256 tests/testthat/test.nest_rvars.R | 221 tests/testthat/test.point_interval.R | 58 tests/testthat/test.predicted_draws.R | 466 tests/testthat/test.predicted_rvars.R | 292 tests/testthat/test.residual_draws.R | 128 tests/testthat/test.sample_draws.R | 46 tests/testthat/test.spread_draws.R | 1063 - tests/testthat/test.spread_rvars.R | 376 tests/testthat/test.stat_dist_slabinterval.R | 64 tests/testthat/test.stat_eye.R | 114 tests/testthat/test.summarise_draws.R | 44 tests/testthat/test.tidy_draws.R | 453 tests/testthat/test.ungather_draws.R | 184 tests/testthat/test.unspread_draws.R | 146 tests/testthat/test.util.R | 64 tests/testthat/test.x_at_y.R | 130 vignettes/tidy-brms.Rmd | 1892 +- vignettes/tidy-posterior.Rmd | 1632 +- vignettes/tidy-rstanarm.Rmd | 1278 - vignettes/tidybayes-residuals.Rmd | 1440 - vignettes/tidybayes.Rmd | 1594 +- 136 files changed, 37031 insertions(+), 36880 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-03-16 0.1.0
Title: Test Functions for Simulation Experiments and Evaluating
Optimization and Emulation Algorithms
Description: Test functions are often used to test computer code.
They are used in optimization to test algorithms and in
metamodeling to evaluate model predictions. This package provides
test functions that can be used for any purpose.
Author: Collin Erickson [aut, cre]
Maintainer: Collin Erickson <collinberickson@gmail.com>
Diff between TestFunctions versions 0.2.1 dated 2024-01-21 and 0.2.2 dated 2024-09-15
DESCRIPTION | 18 ++++++----- MD5 | 19 ++++++----- NAMESPACE | 4 ++ NEWS.md | 7 ++++ R/add_zoom.R | 2 + R/derivatives.R | 1 R/funcprofile.R | 28 +++++++++++------ R/random_lhs.R |only R/subtractlm.R | 3 + build/vignette.rds |binary inst/doc/AnIntroductiontoTestFunctions.html | 45 ++++++++++++++-------------- 11 files changed, 80 insertions(+), 47 deletions(-)
Title: Spatial Data Science Complementary Features
Description: Wrapping and supplementing commonly used functions in the R ecosystem related
to spatial data science, while serving as a basis for other packages maintained
by Wenbo Lv.
Author: Wenbo Lv [aut, cre, cph]
Maintainer: Wenbo Lv <lyu.geosocial@gmail.com>
Diff between sdsfun versions 0.1.1 dated 2024-09-08 and 0.2.0 dated 2024-09-15
DESCRIPTION | 6 MD5 | 17 - NAMESPACE | 1 NEWS.md | 4 R/sf_helpers.R | 38 +++ R/spdep_helpers.R | 2 R/spwt.R | 444 ++++++++++++++++++------------------ man/sf_distance_matrix.Rd |only man/spdep_distance_swm.Rd | 2 tests/testthat/test-spdep_helpers.R | 134 +++++----- 10 files changed, 346 insertions(+), 302 deletions(-)
Title: Vector Representing a Random Variable
Description: Random vectors, called rvecs. An rvec holds
multiple draws, but tries to behave like a standard
R vector, including working well in data frames. Rvecs are
useful for working with output from a simulation or
a Bayesian analysis.
Author: John Bryant [aut, cre],
Bayesian Demography Limited [cph]
Maintainer: John Bryant <john@bayesiandemography.com>
Diff between rvec versions 0.0.6 dated 2023-11-08 and 0.0.7 dated 2024-09-15
rvec-0.0.6/rvec/R/is.numeric.R |only rvec-0.0.6/rvec/tests/testthat/test-is.numeric.R |only rvec-0.0.7/rvec/DESCRIPTION | 8 rvec-0.0.7/rvec/MD5 | 63 - rvec-0.0.7/rvec/NAMESPACE | 11 rvec-0.0.7/rvec/NEWS.md | 24 rvec-0.0.7/rvec/R/check-functions.R | 106 +- rvec-0.0.7/rvec/R/constructors.R | 457 ++++++---- rvec-0.0.7/rvec/R/distributions.R | 508 ++++++------ rvec-0.0.7/rvec/R/draws.R | 189 +++- rvec-0.0.7/rvec/R/extract_draw.R |only rvec-0.0.7/rvec/R/format.R | 2 rvec-0.0.7/rvec/R/rvec-package.R | 92 +- rvec-0.0.7/rvec/R/util.R | 11 rvec-0.0.7/rvec/R/vec_math.R | 89 +- rvec-0.0.7/rvec/README.md | 2 rvec-0.0.7/rvec/build/vignette.rds |binary rvec-0.0.7/rvec/inst/doc/vig1_overview.html | 758 +++++++++--------- rvec-0.0.7/rvec/man/draws_all.Rd | 4 rvec-0.0.7/rvec/man/draws_ci.Rd | 14 rvec-0.0.7/rvec/man/draws_fun.Rd | 2 rvec-0.0.7/rvec/man/draws_median.Rd | 4 rvec-0.0.7/rvec/man/draws_min.Rd |only rvec-0.0.7/rvec/man/draws_quantile.Rd | 4 rvec-0.0.7/rvec/man/dweibull_rvec.Rd | 2 rvec-0.0.7/rvec/man/extract_draw.Rd |only rvec-0.0.7/rvec/man/new_rvec.Rd |only rvec-0.0.7/rvec/man/rvec-package.Rd | 92 +- rvec-0.0.7/rvec/man/rvec.Rd | 27 rvec-0.0.7/rvec/tests/testthat/test-check-functions.R | 46 - rvec-0.0.7/rvec/tests/testthat/test-constructors.R | 134 ++- rvec-0.0.7/rvec/tests/testthat/test-distributions.R | 50 - rvec-0.0.7/rvec/tests/testthat/test-draws.R | 106 ++ rvec-0.0.7/rvec/tests/testthat/test-extract_draw.R |only rvec-0.0.7/rvec/tests/testthat/test-format.R | 2 rvec-0.0.7/rvec/tests/testthat/test-util.R | 7 36 files changed, 1703 insertions(+), 1111 deletions(-)