Title: Automatically Retrieve Multidimensional Distributed Data Sets
Description: Tool to automatically fetch, transform and arrange subsets of
multi- dimensional data sets (collections of files) stored in local and/or
remote file systems or servers, using multicore capabilities where possible.
The tool provides an interface to perceive a collection of data sets as a single
large multidimensional data array, and enables the user to request for automatic
retrieval, processing and arrangement of subsets of the large array. Wrapper
functions to add support for custom file formats can be plugged in/out, making
the tool suitable for any research field where large multidimensional data sets
are involved.
Author: Nicolau Manubens [aut],
An-Chi Ho [aut] ,
Nuria Perez-Zanon [aut] ,
Eva Rifa [ctb],
Victoria Agudetse [cre, ctb],
Bruno de Paula Kinoshita [ctb],
Javier Vegas [ctb],
Pierre-Antoine Bretonniere [ctb],
Roberto Serrano [ctb],
BSC-CNS [aut, cph]
Maintainer: Victoria Agudetse <victoria.agudetse@bsc.es>
Diff between startR versions 2.3.1 dated 2023-12-21 and 2.4.0 dated 2024-09-19
DESCRIPTION | 18 ++++++++--------- MD5 | 12 +++++------ NEWS.md | 7 ++++++ R/NcDataReader.R | 1 R/Start.R | 58 ++++++++++++++++++++++++++++++++++++------------------- R/zzz.R | 13 ++++++++++-- man/Start.Rd | 8 ++++++- 7 files changed, 78 insertions(+), 39 deletions(-)
Title: Secure Shell (SSH) Client for R
Description: Connect to a remote server over SSH to transfer files via SCP,
setup a secure tunnel, or run a command or script on the host while
streaming stdout and stderr directly to the client.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between ssh versions 0.9.2 dated 2024-08-17 and 0.9.3 dated 2024-09-19
ssh-0.9.2/ssh/tests/engine.R |only ssh-0.9.2/ssh/tests/engine.Rout.save |only ssh-0.9.3/ssh/DESCRIPTION | 10 +++++----- ssh-0.9.3/ssh/MD5 | 12 +++++------- ssh-0.9.3/ssh/NEWS | 5 +++++ ssh-0.9.3/ssh/cleanup | 1 + ssh-0.9.3/ssh/src/Makevars.win | 2 +- ssh-0.9.3/ssh/tools/winlibs.R | 6 +++--- 8 files changed, 20 insertions(+), 16 deletions(-)
Title: Statistical Analysis of Haplotypes with Traits and Covariates
when Linkage Phase is Ambiguous
Description: Routines for the analysis of indirectly measured haplotypes. The statistical methods assume that all subjects are unrelated and that haplotypes are ambiguous (due to unknown linkage phase of the genetic markers). The main functions are: haplo.em(), haplo.glm(), haplo.score(), and haplo.power(); all of which have detailed examples in the vignette.
Author: Schaid Daniel [aut],
Jason P. Sinnwell [aut, cre]
Maintainer: Jason P. Sinnwell <sinnwell.jason@mayo.edu>
Diff between haplo.stats versions 1.9.5.1 dated 2024-02-02 and 1.9.7 dated 2024-09-19
haplo.stats-1.9.5.1/haplo.stats/R/00.R |only haplo.stats-1.9.7/haplo.stats/DESCRIPTION | 17 +- haplo.stats-1.9.7/haplo.stats/MD5 | 48 ++++---- haplo.stats-1.9.7/haplo.stats/R/haplo.cc.q | 6 - haplo.stats-1.9.7/haplo.stats/R/haplo.glm.q | 2 haplo.stats-1.9.7/haplo.stats/R/haplo.group.q | 10 - haplo.stats-1.9.7/haplo.stats/R/haplo.model.frame.q | 38 +----- haplo.stats-1.9.7/haplo.stats/R/haplo.score.merge.q | 42 ------- haplo.stats-1.9.7/haplo.stats/R/haplo.score.q | 12 -- haplo.stats-1.9.7/haplo.stats/R/haplo.score.slide.q | 6 - haplo.stats-1.9.7/haplo.stats/R/locus.q | 6 - haplo.stats-1.9.7/haplo.stats/R/plot.haplo.score.slide.q | 4 haplo.stats-1.9.7/haplo.stats/R/plot.seqhap.q | 15 +- haplo.stats-1.9.7/haplo.stats/R/print.haplo.em.q | 6 - haplo.stats-1.9.7/haplo.stats/R/print.haplo.scan.q | 11 - haplo.stats-1.9.7/haplo.stats/R/printBanner.q | 2 haplo.stats-1.9.7/haplo.stats/R/setupGeno.q | 7 - haplo.stats-1.9.7/haplo.stats/README.md | 6 - haplo.stats-1.9.7/haplo.stats/build/vignette.rds |binary haplo.stats-1.9.7/haplo.stats/inst/doc/haplostats.pdf |binary haplo.stats-1.9.7/haplo.stats/src/haplo_em_pin.c | 59 +++++----- haplo.stats-1.9.7/haplo.stats/src/louis_info.c | 30 ++--- haplo.stats-1.9.7/haplo.stats/tests/expanded/test.anova.haplo.glm.Rout |only haplo.stats-1.9.7/haplo.stats/tests/expanded/test.haplo.em.R | 1 haplo.stats-1.9.7/haplo.stats/tests/expanded/test.haplo.em.Rout |only haplo.stats-1.9.7/haplo.stats/tests/expanded/test.haplo.scan.Rout |only haplo.stats-1.9.7/haplo.stats/tests/expanded/test.haplo.score.Rout |only haplo.stats-1.9.7/haplo.stats/tests/expanded/test.methods.haplo.glm.Rout |only 28 files changed, 117 insertions(+), 211 deletions(-)
Title: Further Capabilities in Geographic Information Science
Description: Mapping and spatial data manipulation tools - in particular
drawing thematic maps with nice looking legends, and aggregation of point
data to polygons.
Author: Chris Brunsdon [aut],
Binbin Lu [aut, cre],
Hongyan Chen [aut]
Maintainer: Binbin Lu <binbinlu@whu.edu.cn>
Diff between GISTools versions 1.0-0 dated 2024-09-16 and 1.0-1 dated 2024-09-19
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/thematic.map.R | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-)
More information about splusTimeSeries at CRAN
Permanent link
Title: Provides 'box' Compatibility for 'languageserver'
Description: A 'box' compatible custom language parser for the 'languageserver' package to provide
completion and signature hints in code editors.
Author: Ricardo Rodrigo Basa [aut, cre],
Pavel Demin [aut],
Jakub Nowicki [aut],
Appsilon Sp. z o.o. [cph]
Maintainer: Ricardo Rodrigo Basa <opensource+rodrigo@appsilon.com>
Diff between box.lsp versions 0.1.2 dated 2024-09-16 and 0.1.3 dated 2024-09-19
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 6 +++++- inst/Rprofile.R | 10 ++++++---- tests/testthat/test-lsp_completion_package_three_dots.R | 1 + 5 files changed, 19 insertions(+), 12 deletions(-)
Title: Inference for Released Plug-in Sampling Single Synthetic Dataset
Description: Considering the singly imputed synthetic data generated via plug-in sampling under the multivariate normal model, draws inference procedures including the generalized variance, the sphericity test, the test for independence between two subsets of variables, and the test for the regression of one set of variables on the other. For more details see Klein et al. (2021) <doi:10.1007/s13571-019-00215-9>.
Author: Ricardo Moura [aut, cre, cph] ,
Mina Norouzirad [aut] ,
Vitor Augusto [aut] ,
Miguel Fonseca [ctb] ,
FCT, I.P. [fnd] )
Maintainer: Ricardo Moura <rp.moura@fct.unl.pt>
Diff between PSinference versions 0.2.0 dated 2024-09-17 and 0.2.1 dated 2024-09-19
PSinference |only 1 file changed
Title: Analysing 'SNP' and 'Silicodart' Data - Basic Functions
Description: Facilitates the import and analysis of 'SNP' (single nucleotide 'polymorphism')
and 'silicodart' (presence/absence) data. The main focus is on data generated by 'DarT'
(Diversity Arrays Technology), however, data from other sequencing platforms can be used
once 'SNP' or related fragment presence/absence data from any source is imported. Genetic
datasets are stored in a derived 'genlight' format (package 'adegenet'), that allows for
a very compact storage of data and metadata. Functions are available for
importing and exporting of 'SNP' and 'silicodart' data, for reporting on and
filtering on various criteria (e.g. 'callrate', 'heterozygosity', 'reproducibility',
maximum allele frequency). Additional functions are available for visualization
(e.g. Principle Coordinate Analysis) and creating a spatial representation
using maps. 'dartR.base' is the 'base' package of the 'dartRverse' suits of packages.
To install the other packages, we recommend to install the 'dartRverse' package, that
su [...truncated...]
Author: Bernd Gruber [aut, cre],
Arthur Georges [aut],
Jose L. Mijangos [aut],
Carlo Pacioni [aut],
Diana Robledo-Ruiz [aut],
Peter J. Unmack [ctb],
Oliver Berry [ctb],
Lindsay V. Clark [ctb],
Floriaan Devloo-Delva [ctb],
Eric Archer [ctb],
Ching Ching Lau [ [...truncated...]
Maintainer: Bernd Gruber <bernd.gruber@canberra.edu.au>
Diff between dartR.base versions 0.65 dated 2023-11-17 and 0.98 dated 2024-09-19
dartR.base-0.65/dartR.base/R/datasets.r |only dartR.base-0.65/dartR.base/R/gi2gl.r |only dartR.base-0.65/dartR.base/R/gl2BayesAss.r |only dartR.base-0.65/dartR.base/R/gl2snapp.r |only dartR.base-0.65/dartR.base/R/utils.check.datatype.r |only dartR.base-0.65/dartR.base/R/utils.jackknife.r |only dartR.base-0.65/dartR.base/data |only dartR.base-0.65/dartR.base/man/bandicoot.gl.Rd |only dartR.base-0.65/dartR.base/man/gl2snapp.Rd |only dartR.base-0.65/dartR.base/man/possums.gl.Rd |only dartR.base-0.65/dartR.base/man/testset.gl.Rd |only dartR.base-0.65/dartR.base/man/testset.gs.Rd |only dartR.base-0.98/dartR.base/DESCRIPTION | 21 dartR.base-0.98/dartR.base/MD5 | 268 +- dartR.base-0.98/dartR.base/NAMESPACE | 15 dartR.base-0.98/dartR.base/R/gi2gl.R |only dartR.base-0.98/dartR.base/R/gl.add.indmetrics.r |only dartR.base-0.98/dartR.base/R/gl.allele.freq.r | 11 dartR.base-0.98/dartR.base/R/gl.colors.r | 2 dartR.base-0.98/dartR.base/R/gl.compliance.check.r | 64 dartR.base-0.98/dartR.base/R/gl.diagnostics.hwe.r | 4 dartR.base-0.98/dartR.base/R/gl.dist.phylo.r |only dartR.base-0.98/dartR.base/R/gl.filter.allna.r | 46 dartR.base-0.98/dartR.base/R/gl.filter.factorloadings.r | 17 dartR.base-0.98/dartR.base/R/gl.filter.ld.r | 19 dartR.base-0.98/dartR.base/R/gl.filter.maf.r | 901 +++++----- dartR.base-0.98/dartR.base/R/gl.filter.monomorphs.r | 2 dartR.base-0.98/dartR.base/R/gl.filter.reproducibility.r | 27 dartR.base-0.98/dartR.base/R/gl.filter.taglength.r | 8 dartR.base-0.98/dartR.base/R/gl.fixed.diff.r | 2 dartR.base-0.98/dartR.base/R/gl.impute.r | 19 dartR.base-0.98/dartR.base/R/gl.load.r | 8 dartR.base-0.98/dartR.base/R/gl.pcoa.plot.r | 368 ++-- dartR.base-0.98/dartR.base/R/gl.pcoa.r | 414 +++- dartR.base-0.98/dartR.base/R/gl.read.vcf.r | 336 ++- dartR.base-0.98/dartR.base/R/gl.report.allna.r |only dartR.base-0.98/dartR.base/R/gl.report.bases.r | 29 dartR.base-0.98/dartR.base/R/gl.report.callrate.r | 37 dartR.base-0.98/dartR.base/R/gl.report.diversity.r | 35 dartR.base-0.98/dartR.base/R/gl.report.fstat.r | 22 dartR.base-0.98/dartR.base/R/gl.report.hamming.r | 2 dartR.base-0.98/dartR.base/R/gl.report.heterozygosity.r | 575 ++---- dartR.base-0.98/dartR.base/R/gl.report.hwe.r | 3 dartR.base-0.98/dartR.base/R/gl.report.ld.map.r | 18 dartR.base-0.98/dartR.base/R/gl.report.locmetric.r | 2 dartR.base-0.98/dartR.base/R/gl.report.maf.r | 635 +++---- dartR.base-0.98/dartR.base/R/gl.report.monomorphs.r | 2 dartR.base-0.98/dartR.base/R/gl.report.pa.r | 60 dartR.base-0.98/dartR.base/R/gl.report.polyploid_heterozygosity.r |only dartR.base-0.98/dartR.base/R/gl.report.rdepth.r | 2 dartR.base-0.98/dartR.base/R/gl.report.replicates.r |only dartR.base-0.98/dartR.base/R/gl.report.reproducibility.r | 2 dartR.base-0.98/dartR.base/R/gl.report.taglength.r | 36 dartR.base-0.98/dartR.base/R/gl.save.r | 2 dartR.base-0.98/dartR.base/R/gl.smearplot.r | 93 - dartR.base-0.98/dartR.base/R/gl.sort.r | 39 dartR.base-0.98/dartR.base/R/gl.subsample.ind.r | 13 dartR.base-0.98/dartR.base/R/gl.subsample.loc.r | 2 dartR.base-0.98/dartR.base/R/gl.subsample.loci.r |only dartR.base-0.98/dartR.base/R/gl.test.heterozygosity.r | 7 dartR.base-0.98/dartR.base/R/gl.tree.fitch.r |only dartR.base-0.98/dartR.base/R/gl.tree.nj.r | 26 dartR.base-0.98/dartR.base/R/gl2bayesAss.R |only dartR.base-0.98/dartR.base/R/gl2fasta.r | 23 dartR.base-0.98/dartR.base/R/gl2gapit.r |only dartR.base-0.98/dartR.base/R/gl2genalex.r | 3 dartR.base-0.98/dartR.base/R/gl2genepop.r | 2 dartR.base-0.98/dartR.base/R/gl2gi.r | 4 dartR.base-0.98/dartR.base/R/gl2hapmap.r |only dartR.base-0.98/dartR.base/R/gl2sa.r | 110 - dartR.base-0.98/dartR.base/R/gl2snapper.r |only dartR.base-0.98/dartR.base/R/utils.basic.stats.r | 30 dartR.base-0.98/dartR.base/R/utils.check.datatype.R |only dartR.base-0.98/dartR.base/R/utils.dart2genlight.r | 16 dartR.base-0.98/dartR.base/R/utils.het.report.r |only dartR.base-0.98/dartR.base/R/utils.jackknife.R |only dartR.base-0.98/dartR.base/R/utils.vcfr2genlight.polyploid.R |only dartR.base-0.98/dartR.base/man/gl.He.Rd | 40 dartR.base-0.98/dartR.base/man/gl.Ho.Rd | 40 dartR.base-0.98/dartR.base/man/gl.add.indmetrics.Rd |only dartR.base-0.98/dartR.base/man/gl.alf.Rd | 3 dartR.base-0.98/dartR.base/man/gl.allele.freq.Rd | 3 dartR.base-0.98/dartR.base/man/gl.dist.phylo.Rd |only dartR.base-0.98/dartR.base/man/gl.filter.allna.Rd | 12 dartR.base-0.98/dartR.base/man/gl.filter.factorloadings.Rd | 17 dartR.base-0.98/dartR.base/man/gl.filter.hwe.Rd | 3 dartR.base-0.98/dartR.base/man/gl.filter.ld.Rd | 2 dartR.base-0.98/dartR.base/man/gl.filter.maf.Rd | 77 dartR.base-0.98/dartR.base/man/gl.fixed.diff.Rd | 2 dartR.base-0.98/dartR.base/man/gl.impute.Rd | 9 dartR.base-0.98/dartR.base/man/gl.load.Rd | 5 dartR.base-0.98/dartR.base/man/gl.pcoa.Rd | 18 dartR.base-0.98/dartR.base/man/gl.pcoa.plot.Rd | 25 dartR.base-0.98/dartR.base/man/gl.read.csv.Rd | 1 dartR.base-0.98/dartR.base/man/gl.read.dart.Rd | 1 dartR.base-0.98/dartR.base/man/gl.read.fasta.Rd | 1 dartR.base-0.98/dartR.base/man/gl.read.silicodart.Rd | 1 dartR.base-0.98/dartR.base/man/gl.read.vcf.Rd | 42 dartR.base-0.98/dartR.base/man/gl.report.allna.Rd |only dartR.base-0.98/dartR.base/man/gl.report.bases.Rd | 22 dartR.base-0.98/dartR.base/man/gl.report.basics.Rd | 3 dartR.base-0.98/dartR.base/man/gl.report.callrate.Rd | 27 dartR.base-0.98/dartR.base/man/gl.report.diversity.Rd | 32 dartR.base-0.98/dartR.base/man/gl.report.fstat.Rd | 14 dartR.base-0.98/dartR.base/man/gl.report.hamming.Rd | 1 dartR.base-0.98/dartR.base/man/gl.report.heterozygosity.Rd | 87 dartR.base-0.98/dartR.base/man/gl.report.ld.map.Rd | 4 dartR.base-0.98/dartR.base/man/gl.report.locmetric.Rd | 1 dartR.base-0.98/dartR.base/man/gl.report.maf.Rd | 33 dartR.base-0.98/dartR.base/man/gl.report.overshoot.Rd | 1 dartR.base-0.98/dartR.base/man/gl.report.pa.Rd | 7 dartR.base-0.98/dartR.base/man/gl.report.polyploid_heterozygosity.Rd |only dartR.base-0.98/dartR.base/man/gl.report.rdepth.Rd | 1 dartR.base-0.98/dartR.base/man/gl.report.replicates.Rd |only dartR.base-0.98/dartR.base/man/gl.report.reproducibility.Rd | 1 dartR.base-0.98/dartR.base/man/gl.report.secondaries.Rd | 1 dartR.base-0.98/dartR.base/man/gl.report.taglength.Rd | 26 dartR.base-0.98/dartR.base/man/gl.save.Rd | 1 dartR.base-0.98/dartR.base/man/gl.set.verbosity.Rd | 62 dartR.base-0.98/dartR.base/man/gl.smearplot.Rd | 7 dartR.base-0.98/dartR.base/man/gl.sort.Rd | 32 dartR.base-0.98/dartR.base/man/gl.subsample.loci.Rd |only dartR.base-0.98/dartR.base/man/gl.tree.fitch.Rd |only dartR.base-0.98/dartR.base/man/gl.tree.nj.Rd | 7 dartR.base-0.98/dartR.base/man/gl.write.csv.Rd | 1 dartR.base-0.98/dartR.base/man/gl2bayesAss.Rd | 2 dartR.base-0.98/dartR.base/man/gl2geno.Rd | 39 dartR.base-0.98/dartR.base/man/gl2gi.Rd | 2 dartR.base-0.98/dartR.base/man/gl2snapper.Rd |only dartR.base-0.98/dartR.base/man/utils.check.datatype.Rd | 7 dartR.base-0.98/dartR.base/man/utils.dart2genlight.Rd | 5 dartR.base-0.98/dartR.base/man/utils.dist.binary.Rd | 3 dartR.base-0.98/dartR.base/man/utils.flag.start.Rd | 3 dartR.base-0.98/dartR.base/man/utils.hamming.Rd | 3 dartR.base-0.98/dartR.base/man/utils.het.pop.Rd | 3 dartR.base-0.98/dartR.base/man/utils.impute.Rd | 3 dartR.base-0.98/dartR.base/man/utils.is.fixed.Rd | 3 dartR.base-0.98/dartR.base/man/utils.jackknife.Rd | 5 dartR.base-0.98/dartR.base/man/utils.n.var.invariant.Rd | 3 dartR.base-0.98/dartR.base/man/utils.plot.save.Rd | 3 dartR.base-0.98/dartR.base/man/utils.read.dart.Rd | 1 dartR.base-0.98/dartR.base/man/utils.read.fasta.Rd | 3 dartR.base-0.98/dartR.base/man/utils.read.ped.Rd | 3 dartR.base-0.98/dartR.base/man/utils.recalc.avgpic.Rd | 3 dartR.base-0.98/dartR.base/man/utils.recalc.callrate.Rd | 3 dartR.base-0.98/dartR.base/man/utils.recalc.freqhets.Rd | 3 dartR.base-0.98/dartR.base/man/utils.recalc.freqhomref.Rd | 3 dartR.base-0.98/dartR.base/man/utils.recalc.freqhomsnp.Rd | 3 dartR.base-0.98/dartR.base/man/utils.recalc.maf.Rd | 3 dartR.base-0.98/dartR.base/man/utils.reset.flags.Rd | 3 dartR.base-0.98/dartR.base/man/utils.transpose.Rd | 3 dartR.base-0.98/dartR.base/man/utils.vcfr2genlight.polyploid.Rd |only 152 files changed, 3012 insertions(+), 2158 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-12-15 0.1.1
2018-04-27 0.1.0
Title: Functions for Optimal Matching
Description: Distance based bipartite matching using minimum cost flow, oriented
to matching of treatment and control groups in observational studies ('Hansen'
and 'Klopfer' 2006 <doi:10.1198/106186006X137047>). Routines are provided to
generate distances from generalised linear models (propensity score
matching), formulas giving variables on which to limit matched distances,
stratified or exact matching directives, or calipers, alone or in
combination.
Author: Ben Hansen [aut],
Mark Fredrickson [aut],
Josh Errickson [cre, aut],
Josh Buckner [aut],
Adam Rauh [ctb]
Maintainer: Josh Errickson <jerrick@umich.edu>
Diff between optmatch versions 0.10.7 dated 2023-11-15 and 0.10.8 dated 2024-09-19
optmatch-0.10.7/optmatch/src/distances.h |only optmatch-0.10.7/optmatch/src/map.cc |only optmatch-0.10.7/optmatch/src/map.h |only optmatch-0.10.7/optmatch/src/subsetInfSparseMatrix.h |only optmatch-0.10.8/optmatch/DESCRIPTION | 8 optmatch-0.10.8/optmatch/MD5 | 44 ++-- optmatch-0.10.8/optmatch/NEWS.md | 6 optmatch-0.10.8/optmatch/R/InfinitySparseMatrix.R | 4 optmatch-0.10.8/optmatch/R/MCFSolutions.R | 2 optmatch-0.10.8/optmatch/R/RcppExports.R | 4 optmatch-0.10.8/optmatch/R/abs.optmatch.dlist.R | 5 optmatch-0.10.8/optmatch/R/edgelist.R | 1 optmatch-0.10.8/optmatch/R/fill.NAs.R | 5 optmatch-0.10.8/optmatch/R/mdist.R | 1 optmatch-0.10.8/optmatch/R/print.optmatch.dlist.R | 1 optmatch-0.10.8/optmatch/build/vignette.rds |binary optmatch-0.10.8/optmatch/inst/doc/fullmatch-vignette.html | 8 optmatch-0.10.8/optmatch/inst/doc/matching-from-foreign-software.html | 4 optmatch-0.10.8/optmatch/inst/doc/matching-within-subgroups.html | 4 optmatch-0.10.8/optmatch/man/dimnames-InfinitySparseMatrix.Rd | 2 optmatch-0.10.8/optmatch/src/RcppExports.cpp | 20 +- optmatch-0.10.8/optmatch/src/distances.cc | 93 +++------ optmatch-0.10.8/optmatch/src/r_smahal.cc | 6 optmatch-0.10.8/optmatch/src/smahal.cc | 100 +++++----- optmatch-0.10.8/optmatch/src/subsetInfSparseMatrix.cc | 98 ++++----- 25 files changed, 195 insertions(+), 221 deletions(-)
Title: A Method for Visualization of Pharmacometric Models
Description: A method to visualize pharmacometric analyses which are impacted by
covariate effects. Variability-aligned covariate harmonized-effects
and time-transformation equivalent ('vachette') facilitates intuitive
overlays of data and model predictions, allowing for comprehensive
comparison without dilution effects. 'vachette' improves upon previous
methods Lommerse et al. (2021) <doi:10.1002/psp4.12679>, enabling its
application to all pharmacometric models and enhancing Visual Predictive
Checks (VPC) by integrating data into cohesive plots that can highlight
model misspecification.
Author: Jos Lommerse [aut],
Anna Largajolli [aut],
James Craig [aut, cre],
Nele Mueller-Plock [ctb],
Jeff Sachs [ctb],
Amy Cheung [ctb],
Certara USA, Inc. [cph, fnd]
Maintainer: James Craig <james.craig@certara.com>
Diff between vachette versions 0.40.0 dated 2024-09-09 and 0.40.1 dated 2024-09-19
DESCRIPTION | 6 +++--- MD5 | 4 ++-- tests/testthat/test_vachette_transformations.R | 2 ++ 3 files changed, 7 insertions(+), 5 deletions(-)
Title: Parametric Statistical Modelling and Inference for the
'spatstat' Family
Description: Functionality for parametric statistical modelling and inference for spatial data,
mainly spatial point patterns, in the 'spatstat' family of packages.
(Excludes analysis of spatial data on a linear network,
which is covered by the separate package 'spatstat.linnet'.)
Supports parametric modelling, formal statistical inference, and model validation.
Parametric models include Poisson point processes, Cox point processes, Neyman-Scott cluster processes, Gibbs point processes and determinantal point processes. Models can be fitted to data using maximum likelihood, maximum pseudolikelihood, maximum composite likelihood and the method of minimum contrast. Fitted models can be simulated and predicted. Formal inference includes hypothesis tests (quadrat counting tests, Cressie-Read tests, Clark-Evans test, Berman test, Diggle-Cressie-Loosmore-Ford test, scan test, studentised permutation test, segregation test, ANOVA tests of fitted models, adjusted composite likelihood ratio test, envelope t [...truncated...]
Author: Adrian Baddeley [aut, cre, cph]
,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Kasper Klitgaard Berthelsen [ctb],
Achmad Choiruddin [ctb, cph],
Jean-Francois Coeurjolly [ctb],
Ottmar Cronie [ctb],
Tilman Davies [ctb],
Julian Gilbey [ctb],
Yongtao [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.model versions 3.3-1 dated 2024-07-15 and 3.3-2 dated 2024-09-19
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS | 13 +++++++++++++ R/palmdiagnose.R | 5 +++-- inst/doc/packagesizes.txt | 1 + inst/info/packagesizes.txt | 1 + man/spatstat.model-package.Rd | 2 ++ 7 files changed, 30 insertions(+), 12 deletions(-)
More information about spatstat.model at CRAN
Permanent link
Title: Result Model Manager
Description: Database data model management utilities for R packages in the Observational Health Data Sciences and
Informatics program <https://ohdsi.org>. 'ResultModelManager' provides utility functions to allow package
maintainers to migrate existing SQL database models, export and import results in consistent patterns.
Author: Jamie Gilbert [aut, cre]
Maintainer: Jamie Gilbert <gilbert@ohdsi.org>
Diff between ResultModelManager versions 0.5.10 dated 2024-08-21 and 0.5.11 dated 2024-09-19
DESCRIPTION | 6 ++--- MD5 | 24 +++++++++++------------ NEWS.md | 6 +++++ R/DataModel.R | 2 - R/QueryNamespace.R | 5 +++- inst/doc/CreatingMigrations.pdf |binary inst/doc/PackageDesign.pdf |binary inst/doc/UploadFunctionality.pdf |binary inst/doc/UsingAnExportManager.pdf |binary inst/doc/UsingConnectionHandlers.pdf |binary inst/doc/UsingQueryNamespaces.pdf |binary tests/testthat/setup.R | 2 - tests/testthat/test-QueryNamespace.R | 36 +++++++++++++---------------------- 13 files changed, 41 insertions(+), 40 deletions(-)
More information about ResultModelManager at CRAN
Permanent link
Title: Download Geographic Data on Various Topics Provided and Managed
by the Spatial Data Infrastructure of Peru
Description: Provides R users with easy access to official cartographic data from Peru across a range of topics, including society, transport, environment, agriculture, climate, and more.
It also includes data from regional government entities and technical-scientific institutions, all managed by Peru's Spatial Data Infrastructure.
For more information, please visit: <https://www.geoidep.gob.pe/catalogos-de-metadatos>.
Author: antony barja [aut, cre, cph]
Maintainer: antony barja <geografo.pe@gmail.com>
Diff between geoidep versions 0.1.0 dated 2024-09-05 and 0.2.0 dated 2024-09-19
DESCRIPTION | 10 MD5 | 60 NAMESPACE | 7 NEWS.md |only R/get_data_sources.R |only R/get_departaments.R | 43 R/get_districts.R | 10 R/get_early_warning.R |only R/get_forest_loss_data.R |only R/get_midagri_data.R |only R/get_providers.R |only R/get_provinces.R | 44 R/get_sernanp_data.R |only R/utils.R | 152 + R/zzz.R |only README.md | 78 build/vignette.rds |binary inst/doc/geoidep.R | 66 inst/doc/geoidep.Rmd | 107 inst/doc/geoidep.html | 4284 +++++++++++++++++++++++++++++++++- inst/sources-idep/sources_geoidep.csv | 85 man/figures/fig-timeserie-1.png |only man/figures/geoidep.svg | 8 man/figures/idesep.png |binary man/figures/testing.svg |only man/get_data.Rd |only man/get_data_sources.Rd |only man/get_departaments.Rd | 2 man/get_districts.Rd | 2 man/get_early_warning.Rd |only man/get_early_warning_link.Rd |only man/get_forest_loss_data.Rd |only man/get_geobosque_link.Rd |only man/get_inei_link.Rd | 6 man/get_midagri_data.Rd |only man/get_midagri_link.Rd |only man/get_providers.Rd |only man/get_provinces.Rd | 2 man/get_sernanp_data.Rd |only man/get_sernanp_link.Rd |only man/global-variables.Rd |only vignettes/geoidep.Rmd | 107 42 files changed, 4871 insertions(+), 202 deletions(-)
Title: Differentially Private Statistical Analysis and Machine Learning
Description: An implementation of common statistical analysis and models with
differential privacy (Dwork et al., 2006a) <doi:10.1007/11681878_14>
guarantees. The package contains, for example, functions providing
differentially private computations of mean, variance, median, histograms,
and contingency tables. It also implements some statistical models and
machine learning algorithms such as linear regression (Kifer et al., 2012)
<https://proceedings.mlr.press/v23/kifer12.html>
and SVM (Chaudhuri et al., 2011)
<https://jmlr.org/papers/v12/chaudhuri11a.html>. In addition, it implements
some popular randomization mechanisms, including
the Laplace mechanism (Dwork et al., 2006a)
<doi:10.1007/11681878_14>, Gaussian mechanism (Dwork et al., 2006b)
<doi:10.1007/11761679_29>, analytic Gaussian mechanism (Balle & Wang, 2018)
<https://proceedings.mlr.press/v80/balle18a.html>, and exponential mechanism
(McSherry & Talwar, 2007) <doi:10.1109/FOCS.2007.66>.
Author: Spencer Giddens [aut, cre],
Fang Liu [ctb]
Maintainer: Spencer Giddens <giddens2spencer@gmail.com>
Diff between DPpack versions 0.1.0 dated 2023-04-08 and 0.2.0 dated 2024-09-19
DESCRIPTION | 24 +- LICENSE |only MD5 | 56 +++-- NAMESPACE | 2 R/AnalyticGaussianMechanismUtils.R |only R/DataAccess.R | 14 - R/Mechanisms.R | 143 ++++++++++++++ R/Mechanisms_test.R | 198 +++++++++++++++++++ R/StatFunctions.R | 190 ++++++++++++------- R/StatFunctions_test.R | 299 ++++++++++++++++++++++++++++++ R/StatModels.R | 14 - build/partial.rdb |binary inst/REFERENCES.bib | 16 + man/AnalyticGaussianMechanism.Rd |only man/EmpiricalRiskMinimizationDP.CMS.Rd | 8 man/EmpiricalRiskMinimizationDP.KST.Rd | 2 man/LinearRegressionDP.Rd | 2 man/calibrateAnalyticGaussianMechanism.Rd |only man/covDP.Rd | 11 - man/histogramDP.Rd | 11 - man/histogramDataAccess.Rd | 4 man/meanDP.Rd | 11 - man/medianDP.Rd | 4 man/pooledCovDP.Rd | 11 - man/pooledVarDP.Rd | 11 - man/quantileDP.Rd | 4 man/sdDP.Rd | 11 - man/svmDP.Rd | 2 man/tableDP.Rd | 11 - man/tableDataAccess.Rd | 4 man/varDP.Rd | 11 - 31 files changed, 904 insertions(+), 170 deletions(-)