Title: Provides Some Useful Functions for Making Statistical Tables
Description: You can use the functions provided by the package to make various statistical tables,
such as baseline data tables. Creates 'Table 1', i.e., a description of the baseline patient
characteristics, which is essential in every medical research.
Supports both continuous and categorical variables, as well as
p-values and standardized mean differences.
This method was described by Mary L McHugh (2013) <doi:10.11613/bm.2013.018>.
Author: Qiang Liu [aut, cre]
Maintainer: Qiang Liu <dege857@163.com>
Diff between scitb versions 0.2.0 dated 2024-09-18 and 0.2.1 dated 2024-09-25
DESCRIPTION | 6 +++--- MD5 | 9 +++++---- NAMESPACE | 1 + R/Maddala.Cox.Snell.R | 39 ++++++++++++++++++++++++++++++--------- R/sci1freq.R | 5 ++++- man/Maddala.Cox.Snell.Rd |only 6 files changed, 43 insertions(+), 17 deletions(-)
Title: Meta-Analysis using Structural Equation Modeling
Description: A collection of functions for conducting meta-analysis using a
structural equation modeling (SEM) approach via the 'OpenMx' and
'lavaan' packages. It also implements various procedures to
perform meta-analytic structural equation modeling on the
correlation and covariance matrices, see Cheung (2015)
<doi:10.3389/fpsyg.2014.01521>.
Author: Mike Cheung [aut, cre]
Maintainer: Mike Cheung <mikewlcheung@nus.edu.sg>
Diff between metaSEM versions 1.4.0 dated 2024-05-16 and 1.5.0 dated 2024-09-25
metaSEM-1.4.0/metaSEM/R/create.mxModel.R |only metaSEM-1.4.0/metaSEM/man/create.mxModel.Rd |only metaSEM-1.5.0/metaSEM/DESCRIPTION | 8 metaSEM-1.5.0/metaSEM/MD5 | 127 ++--- metaSEM-1.5.0/metaSEM/NAMESPACE | 17 metaSEM-1.5.0/metaSEM/NEWS | 13 metaSEM-1.5.0/metaSEM/R/Cor2DataFrame.R | 152 ++++-- metaSEM-1.5.0/metaSEM/R/as.mxMatrix.R | 118 ++-- metaSEM-1.5.0/metaSEM/R/lavaan2RAM.R | 322 ++++++------- metaSEM-1.5.0/metaSEM/R/meta2semPlot.R | 77 ++- metaSEM-1.5.0/metaSEM/R/osmasem2.R |only metaSEM-1.5.0/metaSEM/R/rerun.R | 29 - metaSEM-1.5.0/metaSEM/R/sem.R |only metaSEM-1.5.0/metaSEM/build/vignette.rds |binary metaSEM-1.5.0/metaSEM/data/Aloe14.rda |binary metaSEM-1.5.0/metaSEM/data/BCG.rda |binary metaSEM-1.5.0/metaSEM/data/Becker09.rda |binary metaSEM-1.5.0/metaSEM/data/Becker83.rda |binary metaSEM-1.5.0/metaSEM/data/Becker92.rda |binary metaSEM-1.5.0/metaSEM/data/Becker94.rda |binary metaSEM-1.5.0/metaSEM/data/Berkey98.rda |binary metaSEM-1.5.0/metaSEM/data/Boer16.rda |binary metaSEM-1.5.0/metaSEM/data/Bornmann07.rda |binary metaSEM-1.5.0/metaSEM/data/Chan17.rda |only metaSEM-1.5.0/metaSEM/data/Cheung00.rda |binary metaSEM-1.5.0/metaSEM/data/Cheung09.rda |binary metaSEM-1.5.0/metaSEM/data/Cooke16.rda |binary metaSEM-1.5.0/metaSEM/data/Cooper03.rda |binary metaSEM-1.5.0/metaSEM/data/Digman97.rda |binary metaSEM-1.5.0/metaSEM/data/Gleser94.rda |binary metaSEM-1.5.0/metaSEM/data/Gnambs18.rda |binary metaSEM-1.5.0/metaSEM/data/HedgesOlkin85.rda |binary metaSEM-1.5.0/metaSEM/data/Hox02.rda |binary metaSEM-1.5.0/metaSEM/data/Hunter83.rda |binary metaSEM-1.5.0/metaSEM/data/Jaramillo05.rda |binary metaSEM-1.5.0/metaSEM/data/Kalaian96.rda |binary metaSEM-1.5.0/metaSEM/data/Mak09.rda |binary metaSEM-1.5.0/metaSEM/data/Mathieu15.rda |binary metaSEM-1.5.0/metaSEM/data/Nam03.rda |binary metaSEM-1.5.0/metaSEM/data/Nohe15A1.rda |binary metaSEM-1.5.0/metaSEM/data/Nohe15A2.rda |binary metaSEM-1.5.0/metaSEM/data/Norton13.rda |binary metaSEM-1.5.0/metaSEM/data/Roorda11.rda |binary metaSEM-1.5.0/metaSEM/data/Scalco17.rda |binary metaSEM-1.5.0/metaSEM/data/Stadler15.rda |binary metaSEM-1.5.0/metaSEM/data/Tenenbaum02.rda |binary metaSEM-1.5.0/metaSEM/data/issp05.rda |binary metaSEM-1.5.0/metaSEM/data/issp89.rda |binary metaSEM-1.5.0/metaSEM/data/vanderPol17.rda |binary metaSEM-1.5.0/metaSEM/data/wvs94a.rda |binary metaSEM-1.5.0/metaSEM/data/wvs94b.rda |binary metaSEM-1.5.0/metaSEM/inst/doc/Examples.html | 432 +++++++++--------- metaSEM-1.5.0/metaSEM/inst/doc/metaSEM.pdf |binary metaSEM-1.5.0/metaSEM/man/Chan17.Rd |only metaSEM-1.5.0/metaSEM/man/Cor2DataFrame.Rd | 14 metaSEM-1.5.0/metaSEM/man/Jaramillo05.Rd | 3 metaSEM-1.5.0/metaSEM/man/anova.Rd | 6 metaSEM-1.5.0/metaSEM/man/as.mxAlgebra.Rd | 25 - metaSEM-1.5.0/metaSEM/man/coef.Rd | 10 metaSEM-1.5.0/metaSEM/man/issp05.Rd | 116 +++- metaSEM-1.5.0/metaSEM/man/metaSEM-package.Rd | 4 metaSEM-1.5.0/metaSEM/man/osmasem.Rd | 37 + metaSEM-1.5.0/metaSEM/man/plot.Rd | 10 metaSEM-1.5.0/metaSEM/man/readData.Rd | 34 + metaSEM-1.5.0/metaSEM/man/sem.Rd |only metaSEM-1.5.0/metaSEM/man/summary.Rd | 14 metaSEM-1.5.0/metaSEM/man/vcov.Rd | 6 metaSEM-1.5.0/metaSEM/tests/testthat/test_utilities.R | 6 68 files changed, 935 insertions(+), 645 deletions(-)
Title: Simulating from the Polya Posterior
Description: Simulate via Markov chain Monte Carlo (hit-and-run algorithm)
a Dirichlet distribution conditioned to satisfy a finite set of linear
equality and inequality constraints (hence to lie in a convex polytope
that is a subset of the unit simplex).
Author: Glen Meeden [aut, cre],
Radu Lazar [aut],
Charles J. Geyer [aut]
Maintainer: Glen Meeden <gmeeden@umn.edu>
Diff between polyapost versions 1.7 dated 2021-10-07 and 1.7-1 dated 2024-09-25
DESCRIPTION | 20 +++++++++++++------- MD5 | 12 ++++++------ build/partial.rdb |binary build/vignette.rds |binary inst/doc/pp1.pdf |binary man/hitrun.Rd | 8 ++++---- tests/hitrun.Rout.save | 11 +++++------ 7 files changed, 28 insertions(+), 23 deletions(-)
Title: Fast and Accurate Randomized Singular Value Decomposition
Algorithms with 'PCAone'
Description: Fast and Accurate Randomized Singular Value Decomposition (RSVD) methods proposed in the 'PCAone' paper by Li (2023) <https://genome.cshlp.org/content/33/9/1599>.
Author: Zilong Li [aut, cre]
Maintainer: Zilong Li <zilong.dk@gmail.com>
Diff between pcaone versions 1.0.0 dated 2022-10-29 and 1.1.0 dated 2024-09-25
pcaone-1.0.0/pcaone/src/Makevars |only pcaone-1.0.0/pcaone/src/Makevars.win |only pcaone-1.1.0/pcaone/DESCRIPTION | 23 +++++++++--------- pcaone-1.1.0/pcaone/MD5 | 16 +++++++----- pcaone-1.1.0/pcaone/NEWS.md | 5 ++++ pcaone-1.1.0/pcaone/README.md | 42 +++++++++++++++++----------------- pcaone-1.1.0/pcaone/build/partial.rdb |binary pcaone-1.1.0/pcaone/configure |only pcaone-1.1.0/pcaone/configure.win |only pcaone-1.1.0/pcaone/inst/CITATION |only pcaone-1.1.0/pcaone/src/Makevars.in |only pcaone-1.1.0/pcaone/src/pcaone.cpp | 5 ++++ 12 files changed, 53 insertions(+), 38 deletions(-)
Title: Ordered Correlation Forest
Description: Machine learning estimator specifically optimized for predictive modeling of ordered non-numeric outcomes. 'ocf' provides forest-based estimation of the
conditional choice probabilities and the covariates’ marginal effects. Under an "honesty" condition, the estimates are consistent and asymptotically normal
and standard errors can be obtained by leveraging the weight-based representation of the random forest predictions. Please reference the use as Di Francesco (2023)
<doi:10.48550/arXiv.2309.08755>.
Author: Riccardo Di Francesco [aut, cre, cph]
Maintainer: Riccardo Di Francesco <difrancesco.riccardo96@gmail.com>
Diff between ocf versions 1.0.0 dated 2023-09-14 and 1.0.1 dated 2024-09-25
DESCRIPTION | 17 +- MD5 | 63 ++++---- NAMESPACE | 1 NEWS.md | 8 + R/checks.R | 5 R/evaluation-metrics.R | 26 +-- R/generic-s3.R | 215 +++++++++++++++------------- R/marginal-effects.R | 38 ++--- R/multinomial-ml.R | 41 ++--- R/ocf.R | 64 +++++--- R/ordered-ml.R | 41 ++--- R/utils.R | 196 ++++++++++++++++++++++++-- README.md | 42 ++++- build/vignette.rds |binary inst/doc/ocf-short-tutorial.R | 137 ++++++++---------- inst/doc/ocf-short-tutorial.Rmd | 115 +++++++++------ inst/doc/ocf-short-tutorial.html | 294 ++++++++++++++++++++++++++++----------- man/generate_ordered_data.Rd |only man/marginal_effects.Rd | 32 ++-- man/mean_squared_error.Rd | 26 +-- man/multinomial_ml.Rd | 34 ++-- man/ocf.Rd | 47 +++--- man/ordered_ml.Rd | 34 ++-- man/predict.mml.Rd | 28 +-- man/predict.ocf.Rd | 27 +-- man/predict.ocf.forest.Rd | 5 man/predict.oml.Rd | 28 +-- man/print.ocf.Rd | 20 +- man/print.ocf.marginal.Rd | 24 +-- man/summary.ocf.Rd | 21 +- man/summary.ocf.marginal.Rd | 24 +-- man/tree_info.Rd | 20 +- vignettes/ocf-short-tutorial.Rmd | 115 +++++++++------ 33 files changed, 1130 insertions(+), 658 deletions(-)
Title: Feature Extraction and Statistics for Time Series
Description: Provides a collection of features, decomposition methods,
statistical summaries and graphics functions for the analysing tidy time
series data. The package name 'feasts' is an acronym comprising of its key
features: Feature Extraction And Statistics for Time Series.
Author: Mitchell O'Hara-Wild [aut, cre],
Rob Hyndman [aut],
Earo Wang [aut],
Di Cook [ctb],
Thiyanga Talagala [ctb] ,
Leanne Chhay [ctb]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between feasts versions 0.4.0 dated 2024-09-17 and 0.4.1 dated 2024-09-25
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 6 ++++++ R/acf.R | 1 + R/graphics.R | 18 +++++++++--------- man/ACF.Rd | 5 +---- tests/testthat/Rplots.pdf |binary 7 files changed, 27 insertions(+), 23 deletions(-)
Title: Manipulate Date, POSIXct and hms Vectors
Description: Manipulates date ('Date'), date time ('POSIXct') and time
('hms') vectors. Date/times are considered discrete and are floored
whenever encountered. Times are wrapped and time zones are maintained
unless explicitly altered by the user.
Author: Joe Thorley [aut] ,
Ayla Pearson [aut, cre] ,
Poisson Consulting [cph, fnd]
Maintainer: Ayla Pearson <ayla@poissonconsulting.ca>
Diff between dttr2 versions 0.5.1 dated 2024-09-13 and 0.5.2 dated 2024-09-25
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NAMESPACE | 5 ----- NEWS.md | 4 ++++ R/internal.R | 6 +++--- R/utils.R | 4 ++-- 6 files changed, 17 insertions(+), 18 deletions(-)
Title: Tools for Descriptive Statistics
Description: A collection of miscellaneous basic statistic functions and convenience wrappers for efficiently describing data. The author's intention was to create a toolbox, which facilitates the (notoriously time consuming) first descriptive tasks in data analysis, consisting of calculating descriptive statistics, drawing graphical summaries and reporting the results. The package contains furthermore functions to produce documents using MS Word (or PowerPoint) and functions to import data from Excel. Many of the included functions can be found scattered in other packages and other sources written partly by Titans of R. The reason for collecting them here, was primarily to have them consolidated in ONE instead of dozens of packages (which themselves might depend on other packages which are not needed at all), and to provide a common and consistent interface as far as function and arguments naming, NA handling, recycling rules etc. are concerned. Google style guides were used as naming rules (in ab [...truncated...]
Author: Andri Signorell [aut, cre],
Ken Aho [ctb],
Andreas Alfons [ctb],
Nanina Anderegg [ctb],
Tomas Aragon [ctb],
Chandima Arachchige [ctb],
Antti Arppe [ctb],
Adrian Baddeley [ctb],
Kamil Barton [ctb],
Ben Bolker [ctb],
Hans W. Borchers [ctb],
Frederico C [...truncated...]
Maintainer: Andri Signorell <andri@signorell.net>
Diff between DescTools versions 0.99.56 dated 2024-08-22 and 0.99.57 dated 2024-09-25
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/Mod_BrierScore.R | 12 ++++++++++-- 3 files changed, 16 insertions(+), 8 deletions(-)
Title: Models for Skewed Count Distributions Relevant to Networks
Description: Likelihood-based inference for skewed count distributions, typically of degrees used in network modeling. "degreenet" is a part of the "statnet" suite of packages for network analysis. See Jones and Handcock <doi:10.1098/rspb.2003.2369>.
Author: Mark S. Handcock [aut, cre, cph]
Maintainer: Mark S. Handcock <handcock@stat.ucla.edu>
Diff between degreenet versions 1.3-5 dated 2024-02-01 and 1.3-6 dated 2024-09-25
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- build/partial.rdb |binary src/cmp.c | 4 ++-- src/dpoilog.c | 8 ++++---- src/zeta.c | 4 ++-- 6 files changed, 18 insertions(+), 18 deletions(-)
Title: Chronological Ordering for Fossils and Environmental Events
Description: While individual calibrated radiocarbon dates can span several centuries, combining multiple dates together with any chronological constraints can make a chronology much more robust and precise. This package uses Bayesian methods to enforce the chronological ordering of radiocarbon and other dates, for example for trees with multiple radiocarbon dates spaced at exactly known intervals (e.g., 10 annual rings). For methods see Christen 2003 <doi:10.11141/ia.13.2>. Another example is sites where the relative chronological position of the dates is taken into account - the ages of dates further down a site must be older than those of dates further up (Buck, Kenworthy, Litton and Smith 1991 <doi:10.1017/S0003598X00080534>; Nicholls and Jones 2001 <doi:10.1111/1467-9876.00250>). The paper accompanying this R package is Blaauw et al. 2024 <doi:10.1017/RDC.2024.56>.
Author: Maarten Blaauw [aut, cre] ,
Marco A. Aquino Lopez [aut, ctb]
,
J. Andres Christen [aut, ctb, cph]
Maintainer: Maarten Blaauw <maarten.blaauw@qub.ac.uk>
Diff between coffee versions 0.4.0 dated 2024-09-04 and 0.4.1 dated 2024-09-25
coffee-0.4.0/coffee/R/ccurve.R |only coffee-0.4.0/coffee/man/ccurve.Rd |only coffee-0.4.0/coffee/man/glue.ccurves.Rd |only coffee-0.4.1/coffee/DESCRIPTION | 12 coffee-0.4.1/coffee/MD5 | 48 +- coffee-0.4.1/coffee/NAMESPACE | 5 coffee-0.4.1/coffee/NEWS.md | 4 coffee-0.4.1/coffee/R/coffee-package.R | 1 coffee-0.4.1/coffee/R/coffee.R | 7 coffee-0.4.1/coffee/R/dists.R | 2 coffee-0.4.1/coffee/R/plots.R | 4 coffee-0.4.1/coffee/R/readwrite.R | 21 + coffee-0.4.1/coffee/R/simulations.R | 8 coffee-0.4.1/coffee/R/strat.R | 23 - coffee-0.4.1/coffee/R/tree.R | 4 coffee-0.4.1/coffee/R/twalk.R | 1 coffee-0.4.1/coffee/build/partial.rdb |binary coffee-0.4.1/coffee/build/vignette.rds |binary coffee-0.4.1/coffee/inst/CITATION | 4 coffee-0.4.1/coffee/inst/doc/coffee.Rmd | 2 coffee-0.4.1/coffee/inst/doc/coffee.html | 14 coffee-0.4.1/coffee/man/rings.Rd | 2 coffee-0.4.1/coffee/man/strat.cleanup.Rd |only coffee-0.4.1/coffee/vignettes/coffee.Rmd | 2 coffee-0.4.1/coffee/vignettes/strats/mystrat/mystrat.csv | 10 coffee-0.4.1/coffee/vignettes/strats/mystrat/mystrat.out | 200 +++++----- coffee-0.4.1/coffee/vignettes/strats/mystrat/mystrat_energy.out | 200 +++++----- 27 files changed, 304 insertions(+), 270 deletions(-)
Title: Mapping Fisheries Data and Spatial Analysis Tools
Description: This software has evolved from fisheries research conducted at the
Pacific Biological Station (PBS) in 'Nanaimo', British Columbia, Canada. It
extends the R language to include two-dimensional plotting features similar
to those commonly available in a Geographic Information System (GIS).
Embedded C code speeds algorithms from computational geometry, such as
finding polygons that contain specified point events or converting between
longitude-latitude and Universal Transverse Mercator (UTM) coordinates.
Additionally, we include 'C++' code developed by Angus Johnson for the
'Clipper' library, data for a global shoreline, and other data sets in the
public domain. Under the user's R library directory '.libPaths()',
specifically in './PBSmapping/doc', a complete user's guide is offered and
should be consulted to use package functions effectively.
Author: Jon T. Schnute [aut],
Nicholas Boers [aut],
Rowan Haigh [aut, cre],
Alex Couture-Beil [ctb],
Denis Chabot [ctb],
Chris Grandin [ctb],
Alan Murta [ctb],
Angus Johnson [ctb],
Paul Wessel [ctb],
Franklin Antonio [ctb],
Nicholas J. Lewin-Koh [ctb],
Roger [...truncated...]
Maintainer: Rowan Haigh <rowan.haigh@dfo-mpo.gc.ca>
Diff between PBSmapping versions 2.73.4 dated 2023-11-03 and 2.74.1 dated 2024-09-25
PBSmapping-2.73.4/PBSmapping/man/clipLines.Rd |only PBSmapping-2.74.1/PBSmapping/DESCRIPTION | 12 PBSmapping-2.74.1/PBSmapping/MD5 | 73 +- PBSmapping-2.74.1/PBSmapping/NAMESPACE | 37 - PBSmapping-2.74.1/PBSmapping/inst/doc/ChangeLog.txt | 62 ++ PBSmapping-2.74.1/PBSmapping/inst/doc/Links.html | 6 PBSmapping-2.74.1/PBSmapping/inst/doc/PBSmappingIntro.R |only PBSmapping-2.74.1/PBSmapping/inst/doc/PBSmappingIntro.Rnw |only PBSmapping-2.74.1/PBSmapping/inst/doc/PBSmappingIntro.pdf |binary PBSmapping-2.74.1/PBSmapping/man/addBubbles.Rd | 4 PBSmapping-2.74.1/PBSmapping/man/addPolys.Rd | 123 +++- PBSmapping-2.74.1/PBSmapping/man/calcConvexHull.Rd | 38 + PBSmapping-2.74.1/PBSmapping/man/calcGCdist.Rd | 4 PBSmapping-2.74.1/PBSmapping/man/calcVoronoi.Rd | 177 +++--- PBSmapping-2.74.1/PBSmapping/man/clipPolys.Rd | 118 ++-- PBSmapping-2.74.1/PBSmapping/man/dot-add.Rd |only PBSmapping-2.74.1/PBSmapping/man/dot-calc.Rd |only PBSmapping-2.74.1/PBSmapping/man/dot-check.Rd |only PBSmapping-2.74.1/PBSmapping/man/dot-create.Rd |only PBSmapping-2.74.1/PBSmapping/man/dot-fix.Rd |only PBSmapping-2.74.1/PBSmapping/man/dot-get.Rd |only PBSmapping-2.74.1/PBSmapping/man/dot-is.in.Rd | 6 PBSmapping-2.74.1/PBSmapping/man/dot-mat2df.Rd |only PBSmapping-2.74.1/PBSmapping/man/dot-validate.Rd |only PBSmapping-2.74.1/PBSmapping/man/importGSHHS.Rd | 329 ++++++------- PBSmapping-2.74.1/PBSmapping/man/joinPolys.Rd | 292 +++++------ PBSmapping-2.74.1/PBSmapping/man/nepacLL.Rd | 160 +++--- PBSmapping-2.74.1/PBSmapping/man/plotMap.Rd | 74 +- PBSmapping-2.74.1/PBSmapping/src/PBSmapping.c | 2 PBSmapping-2.74.1/PBSmapping/src/PBSmapping.h | 2 PBSmapping-2.74.1/PBSmapping/src/clipperWrapper.cpp | 21 PBSmapping-2.74.1/PBSmapping/src/clipperWrapper.h | 3 PBSmapping-2.74.1/PBSmapping/src/convGSHHS.c | 2 PBSmapping-2.74.1/PBSmapping/src/convGSHHS.h | 2 PBSmapping-2.74.1/PBSmapping/src/conversions.c | 2 PBSmapping-2.74.1/PBSmapping/src/conversions.h | 2 PBSmapping-2.74.1/PBSmapping/src/floating.h | 2 PBSmapping-2.74.1/PBSmapping/src/globals.h | 2 PBSmapping-2.74.1/PBSmapping/src/init.c | 2 PBSmapping-2.74.1/PBSmapping/src/polygons.c | 2 PBSmapping-2.74.1/PBSmapping/src/polygons.h | 2 PBSmapping-2.74.1/PBSmapping/src/thin.h | 4 PBSmapping-2.74.1/PBSmapping/vignettes/PBSmappingIntro.Rnw | 68 ++ 43 files changed, 945 insertions(+), 688 deletions(-)
Title: Mean Length-Based Estimators of Mortality using TMB
Description: Estimation functions and diagnostic tools for mean length-based total mortality estimators based on Gedamke and Hoenig (2006) <doi:10.1577/T05-153.1>.
Author: Quang Huynh [aut, cre],
Todd Gedamke [ctb],
Amy Then [ctb]
Maintainer: Quang Huynh <quang@bluematterscience.com>
Diff between MLZ versions 0.1.4 dated 2022-03-29 and 0.1.5 dated 2024-09-25
DESCRIPTION | 10 - MD5 | 14 +- NEWS.md | 34 ++++-- README.md | 1 build/vignette.rds |binary inst/doc/MLZ.R | 54 +++++----- inst/doc/MLZ.html | 266 ++++++++++++++++++++++++++++------------------------- src/MLZ.cpp | 2 8 files changed, 204 insertions(+), 177 deletions(-)
Title: Classical Age-Depth Modelling of Cores from Deposits
Description: Performs 'classical' age-depth modelling of dated sediment deposits - prior to applying more sophisticated techniques such as Bayesian age-depth modelling. Any radiocarbon dated depths are calibrated. Age-depth models are constructed by sampling repeatedly from the dated levels, each time drawing age-depth curves. Model types include linear interpolation, linear or polynomial regression, and a range of splines. See Blaauw (2010) <doi:10.1016/j.quageo.2010.01.002>.
Author: Maarten Blaauw [aut, cre] ,
J. Andres Christen [ctb] ,
Judith Esquivel Vazquez [ctb],
Simon Goring [ctb]
Maintainer: Maarten Blaauw <maarten.blaauw@qub.ac.uk>
Diff between clam versions 2.6.0 dated 2024-09-04 and 2.6.1 dated 2024-09-25
clam-2.6.0/clam/R/ccurve.R |only clam-2.6.0/clam/man/ccurve.Rd |only clam-2.6.1/clam/DESCRIPTION | 12 clam-2.6.1/clam/MD5 | 40 clam-2.6.1/clam/NAMESPACE | 1 clam-2.6.1/clam/NEWS.md | 3 clam-2.6.1/clam/R/calibrate.R | 2 clam-2.6.1/clam/R/clam.R | 2 clam-2.6.1/clam/R/plots.R | 2 clam-2.6.1/clam/build/partial.rdb |binary clam-2.6.1/clam/build/vignette.rds |binary clam-2.6.1/clam/inst/doc/clam.Rmd | 2 clam-2.6.1/clam/inst/doc/clam.html | 24 clam-2.6.1/clam/vignettes/clam.Rmd | 2 clam-2.6.1/clam/vignettes/clam_runs/Example/Example_interpolated.pdf |binary clam-2.6.1/clam/vignettes/clam_runs/Example/Example_interpolated.png |binary clam-2.6.1/clam/vignettes/clam_runs/Example/Example_interpolated_ages.txt | 1348 ++++---- clam-2.6.1/clam/vignettes/clam_runs/Example/Example_interpolated_settings.txt | 4 clam-2.6.1/clam/vignettes/clam_runs/Example/Example_smooth_spline.pdf |binary clam-2.6.1/clam/vignettes/clam_runs/Example/Example_smooth_spline.png |binary clam-2.6.1/clam/vignettes/clam_runs/Example/Example_smooth_spline_ages.txt | 1542 +++++----- clam-2.6.1/clam/vignettes/clam_runs/Example/Example_smooth_spline_settings.txt | 4 22 files changed, 1493 insertions(+), 1495 deletions(-)
Title: A Swiss-Army Knife for Data I/O
Description: Streamlined data import and export by making assumptions that
the user is probably willing to make: 'import()' and 'export()' determine
the data format from the file extension, reasonable defaults are used for
data import and export, web-based import is natively supported (including
from SSL/HTTPS), compressed files can be read directly, and fast import
packages are used where appropriate. An additional convenience function,
'convert()', provides a simple method for converting between file types.
Author: Jason Becker [aut],
Chung-hong Chan [aut, cre] ,
David Schoch [aut] ,
Geoffrey CH Chan [ctb],
Thomas J. Leeper [aut] ,
Christopher Gandrud [ctb],
Andrew MacDonald [ctb],
Ista Zahn [ctb],
Stanislaus Stadlmann [ctb],
Ruaridh Williamson [ctb],
Patrick K [...truncated...]
Maintainer: Chung-hong Chan <chainsawtiney@gmail.com>
Diff between rio versions 1.2.2 dated 2024-08-19 and 1.2.3 dated 2024-09-25
rio-1.2.2/rio/tests/testthat/test_install_formats.R |only rio-1.2.3/rio/DESCRIPTION | 6 ++--- rio-1.2.3/rio/MD5 | 24 ++++++++++---------- rio-1.2.3/rio/NAMESPACE | 1 rio-1.2.3/rio/NEWS.md | 5 ++++ rio-1.2.3/rio/R/onLoad.R | 4 +-- rio-1.2.3/rio/R/suggestions.R | 24 ++++++++++++++++++-- rio-1.2.3/rio/R/utils.R | 5 ---- rio-1.2.3/rio/README.md | 11 +++++++-- rio-1.2.3/rio/inst/doc/labelled.html | 4 +-- rio-1.2.3/rio/inst/doc/rio.html | 4 +-- rio-1.2.3/rio/man/install_formats.Rd | 7 ++++- rio-1.2.3/rio/tests/testthat/test_suggestions.R |only rio-1.2.3/rio/tests/testthat/test_trust.R | 8 +++--- 14 files changed, 68 insertions(+), 35 deletions(-)
Title: Read Markdown Tables into Tibbles
Description: Efficient reading of raw markdown tables into tibbles. Designed to
accept content from strings, files, and URLs with the ability to extract
and read multiple tables from markdown for analysis.
Author: Jordan Bradford [aut, cre, cph]
Maintainer: Jordan Bradford <jrdnbradford@gmail.com>
Diff between readMDTable versions 0.1.1 dated 2024-09-17 and 0.2.0 dated 2024-09-25
DESCRIPTION | 20 +- MD5 | 40 +++-- NAMESPACE | 11 - NEWS.md | 11 + R/extract_md_tables.R |only R/readMDTable-package.R | 20 -- R/read_md_table.R | 71 +++------ R/read_md_table_content.R |only R/read_md_table_example.R | 9 - R/source_file.R | 10 - R/warn_md_table.R | 2 README.md | 133 +++++++++++++----- build |only inst/doc |only inst/extdata/mtcars-split.md |only man/extract_md_tables.Rd |only man/readMDTable-package.Rd | 2 man/read_md_table.Rd | 174 ++++++++++++++++++++---- man/read_md_table_example.Rd | 7 tests/testthat/test-extract_md_tables.R |only tests/testthat/test-read_md_table.R | 2 tests/testthat/test-read_md_table_example.R | 3 tests/testthat/testmd/messy-multiple-tables.md |only tests/testthat/testmd/simple-multiple-tables.md |only vignettes |only 25 files changed, 339 insertions(+), 176 deletions(-)
Title: Longitudinal Bayesian Historical Borrowing Models
Description: Historical borrowing in clinical trials can improve
precision and operating characteristics. This package supports
a longitudinal hierarchical model to borrow historical
control data from other studies to better characterize the
control response of the current study. It also quantifies
the amount of borrowing through longitudinal benchmark models (independent
and pooled). The hierarchical model approach to historical borrowing
is discussed by Viele et al. (2013) <doi:10.1002/pst.1589>.
Author: William Michael Landau [aut, cre]
,
Albert Man [rev],
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between historicalborrowlong versions 0.0.8 dated 2023-11-30 and 0.1.0 dated 2024-09-25
DESCRIPTION | 8 MD5 | 70 + NAMESPACE | 2 NEWS.md | 4 R/hbl_ess.R |only R/hbl_mcmc_hierarchical.R | 12 R/hbl_mcmc_independent.R | 2 R/hbl_mcmc_pool.R | 2 R/hbl_metrics.R | 7 R/hbl_package.R | 3 R/hbl_s_tau.R | 11 R/hbl_sim_hierarchical.R | 54 + R/hbl_summary.R | 29 R/utils_stan.R | 45 - README.md | 5 build/vignette.rds |binary inst/WORDLIST | 2 inst/doc/methods.Rmd | 92 +- inst/doc/methods.html | 354 +++------ inst/stan/historicalborrowlong.stan | 11 man/hbl_data.Rd | 4 man/hbl_ess.Rd |only man/hbl_mcmc_hierarchical.Rd | 74 +- man/hbl_mcmc_independent.Rd | 50 - man/hbl_mcmc_pool.Rd | 8 man/hbl_mcmc_sge.Rd | 69 + man/hbl_metrics.Rd | 11 man/hbl_s_tau.Rd | 15 man/hbl_sim_hierarchical.Rd | 29 man/hbl_summary.Rd | 20 man/historicalborrowlong-package.Rd | 1 src/stanExports_historicalborrowlong.h | 1001 ++++++++++++++-------------- tests/testthat/test-hbl_ess.R |only tests/testthat/test-hbl_mcmc_hierarchical.R | 130 +-- tests/testthat/test-hbl_sim_hierarchical.R | 111 +-- tests/testthat/test-hbl_summary.R | 6 vignettes/bibliography.bib |only vignettes/methods.Rmd | 92 +- 38 files changed, 1210 insertions(+), 1124 deletions(-)
More information about historicalborrowlong at CRAN
Permanent link
Title: Estuarine Bayesian Single-Station Estimation Method for
Ecosystem Metabolism
Description: Estimate ecosystem metabolism in a Bayesian framework for
individual water quality monitoring stations with continuous dissolved
oxygen time series. A mass balance equation is used that provides
estimates of parameters for gross primary production, respiration,
and gas exchange. Methods adapted from Grace et al. (2015)
<doi:10.1002/lom3.10011> and Wanninkhof (2014) <doi:10.4319/lom.2014.12.351>.
Details in Beck et al. (2024) <doi:10.1002/lom3.10620>.
Author: Marcus Beck [aut, cre] ,
Maria Herrmann [aut],
Jill Arriola [aut] ,
Raymond Najjar [aut]
Maintainer: Marcus Beck <mbeck@tbep.org>
Diff between EBASE versions 1.0.2 dated 2024-06-04 and 1.1.0 dated 2024-09-25
DESCRIPTION | 14 +- MD5 | 47 ++++--- NAMESPACE | 2 NEWS.md | 8 + R/ebase.R | 36 +++--- R/ebase_plot.R | 52 +++++++- R/ebase_years.R |only R/exres.R | 7 - R/globalVariables.R | 10 - build/vignette.rds |binary data/exres.rda |binary inst/doc/EBASE.R | 3 inst/doc/EBASE.Rmd | 16 ++ inst/doc/EBASE.html | 227 +++++++++++++++++++++----------------- inst/ebase_model.txt | 1 man/ebase.Rd | 14 +- man/ebase_eqboxy.Rd | 60 +++++----- man/ebase_plot.Rd | 15 ++ man/ebase_rho.Rd | 64 +++++----- man/ebase_schmidt.Rd | 54 ++++----- man/ebase_years.Rd |only man/exres.Rd | 107 +++++++++-------- tests/testthat/test-ebase.R | 24 ++-- tests/testthat/test-ebase_plot.R | 8 + tests/testthat/test-ebase_years.R |only vignettes/EBASE.Rmd | 16 ++ 26 files changed, 471 insertions(+), 314 deletions(-)
Title: Social Contact Matrices for 177 Countries
Description: Data package for the supplementary data in Prem et al. (2017)
<doi:10.1371/journal.pcbi.1005697> and Prem et al.
<doi:10.1371/journal.pcbi.1009098>.
Provides easy access to contact data for 177 countries, for use in
epidemiological, demographic or social sciences research.
Author: Hugo Gruson [cre, aut, cph] ,
Kiesha Prem [dtc] ,
Alex Richard Cook [dtc] ,
Mark Jit [dtc]
Maintainer: Hugo Gruson <hugo.gruson+R@normalesup.org>
Diff between contactdata versions 1.0.0 dated 2023-03-22 and 1.1.0 dated 2024-09-25
DESCRIPTION | 8 MD5 | 26 +-- NEWS.md | 52 ++++++ README.md | 85 +++------ build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 16 + inst/doc/countries.R | 2 inst/doc/countries.html | 326 +++++++++++++++++++------------------- inst/doc/visualise_age.R | 2 inst/doc/visualise_age.html | 20 +- inst/doc/visualise_contact.R | 6 inst/doc/visualise_contact.html | 56 +++--- inst/extdata/population_byage.rds |binary 14 files changed, 324 insertions(+), 275 deletions(-)
Title: Generalized Entropy Calibration
Description: Generalized Entropy Calibration produces calibration weights
using generalized entropy as the objective function for optimization.
This approach, as implemented in the 'GECal' package, is based on
Kwon, Kim, and Qiu (2024) <doi:10.48550/arXiv.2404.01076>. Unlike
traditional methods, 'GECal' incorporates design weights into the
constraints to maintain design consistency, rather than including
them in the objective function itself.
Author: Yonghyun Kwon [aut, cre] ,
Jae Kwang Kim [aut] ,
Yumou Qiu [aut]
Maintainer: Yonghyun Kwon <yhkwon@kma.ac.kr>
Diff between GECal versions 0.1.3 dated 2024-09-18 and 0.1.5 dated 2024-09-25
DESCRIPTION | 11 +++++---- MD5 | 18 ++++++++-------- R/G.R | 2 - R/GEcalib.R | 18 ++++++++-------- R/IAdata.R | 2 - R/estimate.R | 10 ++++++--- README.md | 62 ++++++++++++++++++++++++++++++++++++-------------------- man/GEcalib.Rd | 11 ++++----- man/IAdata.Rd | 2 - man/estimate.Rd | 2 - 10 files changed, 79 insertions(+), 59 deletions(-)
Title: Structural Reliability Analysis
Description: Perform structural reliability analysis, including computation and
simulation with system signatures, Samaniego (2007)
<doi:10.1007/978-0-387-71797-5>, and survival signatures, Coolen and
Coolen-Maturi (2013) <doi:10.1007/978-3-642-30662-4_8>. Additionally
supports parametric and topological inference given system lifetime data,
Aslett (2012) <https://www.louisaslett.com/PhD_Thesis.pdf>.
Author: Louis Aslett [aut, cre, cph]
Maintainer: Louis Aslett <louis.aslett@durham.ac.uk>
Diff between ReliabilityTheory versions 0.3.0 dated 2024-02-17 and 0.3.1 dated 2024-09-25
ReliabilityTheory-0.3.0/ReliabilityTheory/NEWS |only ReliabilityTheory-0.3.0/ReliabilityTheory/R/plot.R |only ReliabilityTheory-0.3.1/ReliabilityTheory/DESCRIPTION | 6 +++--- ReliabilityTheory-0.3.1/ReliabilityTheory/MD5 | 7 +++---- ReliabilityTheory-0.3.1/ReliabilityTheory/NEWS.md |only ReliabilityTheory-0.3.1/ReliabilityTheory/man/systemGraphToGenerator.Rd | 6 +++--- 6 files changed, 9 insertions(+), 10 deletions(-)
More information about ReliabilityTheory at CRAN
Permanent link
Title: Mediation, Moderation and Moderated-Mediation After Model
Fitting
Description: Computes indirect effects, conditional effects, and conditional
indirect effects in a structural equation model or path model after model
fitting, with no need to define any user parameters or label any paths in
the model syntax, using the approach presented in Cheung and Cheung
(2023) <doi:10.3758/s13428-023-02224-z>. Can also form bootstrap
confidence intervals by doing bootstrapping only once and reusing the
bootstrap estimates in all subsequent computations. Supports bootstrap
confidence intervals for standardized (partially or completely) indirect
effects, conditional effects, and conditional indirect effects as described
in Cheung (2009) <doi:10.3758/BRM.41.2.425> and Cheung, Cheung, Lau, Hui,
and Vong (2022) <doi:10.1037/hea0001188>. Model fitting can be done by
structural equation modeling using lavaan() or regression using lm().
Author: Shu Fai Cheung [aut, cre] ,
Sing-Hang Cheung [aut]
Maintainer: Shu Fai Cheung <shufai.cheung@gmail.com>
Diff between manymome versions 0.2.2 dated 2024-06-05 and 0.2.3 dated 2024-09-25
DESCRIPTION | 8 MD5 | 138 + NAMESPACE | 3 NEWS.md | 59 R/check_path.R | 8 R/cond_indirect.R | 31 R/confint_cond_indirect_effects.R | 84 + R/confint_indirect.R | 130 + R/index_mome.R | 4 R/indirect.R | 121 + R/lav_helpers_mod.R |only R/lm2ptable.R | 4 R/lm_helpers_mod.R |only R/merge_mod_levels.R | 6 R/mod_levels.R | 2 R/plot_effect_vs_w.R | 203 ++ R/plotmod.R | 4 R/plotmod_helpers.R | 4 R/print_cond_indirect_effect.R | 388 +++++ R/pseudo_jn.r | 124 + README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/do_boot.Rmd | 7 inst/doc/do_boot.html | 242 +-- inst/doc/do_mc.Rmd | 692 ++++----- inst/doc/do_mc.html | 12 inst/doc/do_mc_lavaan_mi.Rmd | 608 ++++---- inst/doc/do_mc_lavaan_mi.html | 34 inst/doc/manymome.Rmd | 14 inst/doc/manymome.html | 106 - inst/doc/med_lav.Rmd | 1132 +++++++-------- inst/doc/med_lav.html | 46 inst/doc/med_lm.Rmd | 1654 +++++++++++------------ inst/doc/med_lm.html | 60 inst/doc/mod_levels.html | 462 +++--- inst/doc/mome_lm.Rmd | 732 +++++----- inst/doc/mome_lm.html | 16 man/check_path.Rd | 8 man/cond_indirect.Rd | 39 man/confint.cond_indirect_effects.Rd | 58 man/confint.indirect.Rd | 46 man/index_of_mome.Rd | 4 man/indirect_i.Rd | 25 man/plot.cond_indirect_effects.Rd | 4 man/plot_effect_vs_w.Rd | 131 + man/print.cond_indirect_effects.Rd | 92 + man/pseudo_johnson_neyman.Rd | 48 tests/testthat/test_cond_indirect_lm.R | 3 tests/testthat/test_cond_indirect_lm_one_model.R | 3 tests/testthat/test_jn.r | 20 tests/testthat/test_jn_se.r |only tests/testthat/test_lav_implied_all.R | 10 tests/testthat/test_merge_mod_levels.R | 10 tests/testthat/test_mi_lavaan_mi_no_means.R | 26 tests/testthat/test_mod_only_from_example.R |only tests/testthat/test_mod_only_kway.R |only tests/testthat/test_mod_only_kway_cat.R |only tests/testthat/test_mod_only_not_moderated.R |only tests/testthat/test_mod_only_plot_vs_w.R |only tests/testthat/test_plot_indirect_vs_w.R | 21 vignettes/articles/med_mg.Rmd | 58 vignettes/do_boot.Rmd | 7 vignettes/do_mc.Rmd | 692 ++++----- vignettes/do_mc_draw_model-1.png |binary vignettes/do_mc_lavaan_mi.Rmd | 608 ++++---- vignettes/do_mc_lavaan_mi_draw_model-1.png |binary vignettes/manymome.Rmd | 14 vignettes/mde_lav_draw_model-1.png |binary vignettes/med_lav.Rmd | 1132 +++++++-------- vignettes/med_lm.Rmd | 1654 +++++++++++------------ vignettes/med_lm_draw_model-1.png |binary vignettes/mome_lm.Rmd | 732 +++++----- vignettes/mome_lm_draw_model-1.png |binary 74 files changed, 6973 insertions(+), 5612 deletions(-)
Title: R Codes and Datasets for Generalized Linear Mixed Models: Modern
Concepts, Methods and Applications by Walter W. Stroup
Description: R Codes and Datasets for Stroup, W. W. (2012). Generalized Linear Mixed Models Modern Concepts, Methods and Applications, CRC Press.
Author: Muhammad Yaseen [aut, cre, cph]
,
Adeela Munawar [aut, ctb],
Walter W. Stroup [aut, ctb],
Kent M. Eskridge [aut, ctb]
Maintainer: Muhammad Yaseen <myaseen208@gmail.com>
Diff between StroupGLMM versions 0.1.0 dated 2016-04-18 and 0.2.0 dated 2024-09-25
StroupGLMM-0.1.0/StroupGLMM/tests |only StroupGLMM-0.2.0/StroupGLMM/DESCRIPTION | 43 ++- StroupGLMM-0.2.0/StroupGLMM/MD5 | 135 +++++++----- StroupGLMM-0.2.0/StroupGLMM/NAMESPACE | 14 + StroupGLMM-0.2.0/StroupGLMM/NEWS.md | 8 StroupGLMM-0.2.0/StroupGLMM/R/DataExam2.B.2.R | 20 + StroupGLMM-0.2.0/StroupGLMM/R/DataSet7.1.R |only StroupGLMM-0.2.0/StroupGLMM/R/DataSet7.2.R |only StroupGLMM-0.2.0/StroupGLMM/R/DataSet7.3.R |only StroupGLMM-0.2.0/StroupGLMM/R/DataSet7.4.R |only StroupGLMM-0.2.0/StroupGLMM/R/DataSet7.4rsm.R |only StroupGLMM-0.2.0/StroupGLMM/R/DataSet7.6.R |only StroupGLMM-0.2.0/StroupGLMM/R/DataSet7.7.R |only StroupGLMM-0.2.0/StroupGLMM/R/Exam1.1.R | 172 +++++---------- StroupGLMM-0.2.0/StroupGLMM/R/Exam1.2.R | 23 -- StroupGLMM-0.2.0/StroupGLMM/R/Exam2.B.1.R | 38 +-- StroupGLMM-0.2.0/StroupGLMM/R/Exam2.B.2.R | 32 -- StroupGLMM-0.2.0/StroupGLMM/R/Exam2.B.3.R | 48 ---- StroupGLMM-0.2.0/StroupGLMM/R/Exam2.B.4.R | 35 +-- StroupGLMM-0.2.0/StroupGLMM/R/Exam2.B.5.R | 91 +------- StroupGLMM-0.2.0/StroupGLMM/R/Exam2.B.6.R | 32 +- StroupGLMM-0.2.0/StroupGLMM/R/Exam2.B.7.R | 94 +------- StroupGLMM-0.2.0/StroupGLMM/R/Exam3.2.R | 65 +----- StroupGLMM-0.2.0/StroupGLMM/R/Exam3.3.R | 195 ++++++++---------- StroupGLMM-0.2.0/StroupGLMM/R/Exam3.5.R | 99 ++------- StroupGLMM-0.2.0/StroupGLMM/R/Exam3.9.R | 85 ++----- StroupGLMM-0.2.0/StroupGLMM/R/Exam4.1.R | 92 +------- StroupGLMM-0.2.0/StroupGLMM/R/Exam5.1.R | 107 ++------- StroupGLMM-0.2.0/StroupGLMM/R/Exam5.2.R | 205 ++++--------------- StroupGLMM-0.2.0/StroupGLMM/R/Exam5.3.R | 81 ++----- StroupGLMM-0.2.0/StroupGLMM/R/Exam7.1.R |only StroupGLMM-0.2.0/StroupGLMM/R/Exam7.2.R |only StroupGLMM-0.2.0/StroupGLMM/R/Exam7.3.R |only StroupGLMM-0.2.0/StroupGLMM/R/Exam7.6.2.1.R |only StroupGLMM-0.2.0/StroupGLMM/R/Table1.1.R | 28 +- StroupGLMM-0.2.0/StroupGLMM/README.md | 97 ++++++++ StroupGLMM-0.2.0/StroupGLMM/data/DataSet7.1.RData |only StroupGLMM-0.2.0/StroupGLMM/data/DataSet7.2.RData |only StroupGLMM-0.2.0/StroupGLMM/data/DataSet7.3.RData |only StroupGLMM-0.2.0/StroupGLMM/data/DataSet7.4.RData |only StroupGLMM-0.2.0/StroupGLMM/data/DataSet7.4rsm.RData |only StroupGLMM-0.2.0/StroupGLMM/data/DataSet7.6.RData |only StroupGLMM-0.2.0/StroupGLMM/data/DataSet7.7.RData |only StroupGLMM-0.2.0/StroupGLMM/inst |only StroupGLMM-0.2.0/StroupGLMM/man/DataExam2.B.2.Rd | 25 +- StroupGLMM-0.2.0/StroupGLMM/man/DataExam2.B.3.Rd | 17 - StroupGLMM-0.2.0/StroupGLMM/man/DataExam2.B.4.Rd | 17 - StroupGLMM-0.2.0/StroupGLMM/man/DataExam2.B.7.Rd | 17 - StroupGLMM-0.2.0/StroupGLMM/man/DataSet3.1.Rd | 17 - StroupGLMM-0.2.0/StroupGLMM/man/DataSet3.2.Rd | 17 - StroupGLMM-0.2.0/StroupGLMM/man/DataSet3.3.Rd | 17 - StroupGLMM-0.2.0/StroupGLMM/man/DataSet4.1.Rd | 17 - StroupGLMM-0.2.0/StroupGLMM/man/DataSet5.1.Rd | 17 - StroupGLMM-0.2.0/StroupGLMM/man/DataSet5.2.Rd | 17 - StroupGLMM-0.2.0/StroupGLMM/man/DataSet7.1.Rd |only StroupGLMM-0.2.0/StroupGLMM/man/DataSet7.2.Rd |only StroupGLMM-0.2.0/StroupGLMM/man/DataSet7.3.Rd |only StroupGLMM-0.2.0/StroupGLMM/man/DataSet7.4.Rd |only StroupGLMM-0.2.0/StroupGLMM/man/DataSet7.4rsm.Rd |only StroupGLMM-0.2.0/StroupGLMM/man/DataSet7.6.Rd |only StroupGLMM-0.2.0/StroupGLMM/man/DataSet7.7.Rd |only StroupGLMM-0.2.0/StroupGLMM/man/Exam1.1.Rd | 153 ++++---------- StroupGLMM-0.2.0/StroupGLMM/man/Exam1.2.Rd | 32 +- StroupGLMM-0.2.0/StroupGLMM/man/Exam2.B.1.Rd | 44 +--- StroupGLMM-0.2.0/StroupGLMM/man/Exam2.B.2.Rd | 40 --- StroupGLMM-0.2.0/StroupGLMM/man/Exam2.B.3.Rd | 54 +---- StroupGLMM-0.2.0/StroupGLMM/man/Exam2.B.4.Rd | 41 +-- StroupGLMM-0.2.0/StroupGLMM/man/Exam2.B.5.Rd | 94 +------- StroupGLMM-0.2.0/StroupGLMM/man/Exam2.B.6.Rd | 37 +-- StroupGLMM-0.2.0/StroupGLMM/man/Exam2.B.7.Rd | 98 +-------- StroupGLMM-0.2.0/StroupGLMM/man/Exam3.2.Rd | 67 +----- StroupGLMM-0.2.0/StroupGLMM/man/Exam3.3.Rd | 201 ++++++++---------- StroupGLMM-0.2.0/StroupGLMM/man/Exam3.5.Rd | 105 ++------- StroupGLMM-0.2.0/StroupGLMM/man/Exam3.9.Rd | 84 ++----- StroupGLMM-0.2.0/StroupGLMM/man/Exam4.1.Rd | 92 +------- StroupGLMM-0.2.0/StroupGLMM/man/Exam5.1.Rd | 99 ++------- StroupGLMM-0.2.0/StroupGLMM/man/Exam5.2.Rd | 195 ++++-------------- StroupGLMM-0.2.0/StroupGLMM/man/Exam5.3.Rd | 74 ++---- StroupGLMM-0.2.0/StroupGLMM/man/Exam7.1.Rd |only StroupGLMM-0.2.0/StroupGLMM/man/Exam7.2.Rd |only StroupGLMM-0.2.0/StroupGLMM/man/Exam7.3.Rd |only StroupGLMM-0.2.0/StroupGLMM/man/Exam7.6.2.1.Rd |only StroupGLMM-0.2.0/StroupGLMM/man/Table1.1.Rd | 27 +- StroupGLMM-0.2.0/StroupGLMM/man/Table1.2.Rd | 17 - 84 files changed, 1230 insertions(+), 2341 deletions(-)
Title: Perform Power Analysis for the RI-CLPM and STARTS Model
Description: Perform user-friendly power analyses for the random
intercept cross-lagged panel model (RI-CLPM) and the bivariate stable trait
autoregressive trait state (STARTS) model. The strategy as proposed by
Mulder (2023) <doi:10.1080/10705511.2022.2122467> is implemented. Extensions
include the use of parameter constraints over time, bounded estimation,
generation of data with skewness and kurtosis, and the option to setup the power
analysis for Mplus.
Author: Jeroen Mulder [aut, cre, cph] ,
Netherlands Organization for Scientific Research [fnd]
Maintainer: Jeroen Mulder <j.d.mulder@uu.nl>
Diff between powRICLPM versions 0.1.1 dated 2023-02-07 and 0.2.0 dated 2024-09-25
powRICLPM-0.1.1/powRICLPM/R/bootstrap-uncertainty.R |only powRICLPM-0.1.1/powRICLPM/R/check.R |only powRICLPM-0.1.1/powRICLPM/R/run.R |only powRICLPM-0.1.1/powRICLPM/inst/doc/Mulder2022.R |only powRICLPM-0.1.1/powRICLPM/inst/doc/Mulder2022.Rmd |only powRICLPM-0.1.1/powRICLPM/inst/doc/Mulder2022.html |only powRICLPM-0.1.1/powRICLPM/inst/doc/powRICLPM.R |only powRICLPM-0.1.1/powRICLPM/inst/doc/powRICLPM.Rmd |only powRICLPM-0.1.1/powRICLPM/inst/doc/powRICLPM.html |only powRICLPM-0.1.1/powRICLPM/tests/testthat/_snaps |only powRICLPM-0.1.1/powRICLPM/tests/testthat/test-Mplus.R |only powRICLPM-0.1.1/powRICLPM/tests/testthat/test-checks-give.R |only powRICLPM-0.1.1/powRICLPM/tests/testthat/test-checks-summary.R |only powRICLPM-0.1.1/powRICLPM/tests/testthat/test-checks.R |only powRICLPM-0.1.1/powRICLPM/tests/testthat/test-dependencies.R |only powRICLPM-0.1.1/powRICLPM/tests/testthat/test-lavaan.R |only powRICLPM-0.1.1/powRICLPM/tests/testthat/test-run.R |only powRICLPM-0.1.1/powRICLPM/tests/testthat/test-setup.R |only powRICLPM-0.1.1/powRICLPM/vignettes/Mulder2022.Rmd |only powRICLPM-0.1.1/powRICLPM/vignettes/powRICLPM.Rmd |only powRICLPM-0.2.0/powRICLPM/DESCRIPTION | 36 powRICLPM-0.2.0/powRICLPM/MD5 | 137 +-- powRICLPM-0.2.0/powRICLPM/NAMESPACE | 7 powRICLPM-0.2.0/powRICLPM/NEWS.md | 40 powRICLPM-0.2.0/powRICLPM/R/Mplus.R | 346 ++++---- powRICLPM-0.2.0/powRICLPM/R/check-give.R | 60 - 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powRICLPM-0.2.0/powRICLPM/vignettes/mulder_power_2023.Rmd |only powRICLPM-0.2.0/powRICLPM/vignettes/references.bib |only 97 files changed, 2227 insertions(+), 1692 deletions(-)
Title: Computing Personal Values Scores
Description: Compute personal values scores from various questionnaires based on the theoretical constructs proposed by professor Shalom H. Schwartz. Designed for researchers and practitioners in psychology, sociology, and related fields, the package facilitates the quantification and visualization of different dimensions related to personal values from survey data. It incorporates the recommended statistical adjustment to enhance the accuracy and interpretation of the results.
Note: The package 'persval' is independently developed based on the personal values theoretical framework, and is not directly endorsed by professor Schwartz.
Author: Giuseppe Corbelli [aut, cre]
Maintainer: Giuseppe Corbelli <giuseppe.corbelli@uninettunouniversity.net>
Diff between persval versions 1.0.0 dated 2024-08-26 and 1.1.1 dated 2024-09-25
DESCRIPTION | 9 +++++---- MD5 | 38 +++++++++++++++++++++----------------- NAMESPACE | 7 +++++++ NEWS.md | 8 ++++++++ R/fourvalplot.R |only R/persval-package.R | 34 ++++++++++++++++++++++------------ R/pvq21.R | 42 +++++++++++++++++++++++++++++------------- R/pvq40.R | 42 +++++++++++++++++++++++++++++------------- R/svs.R | 42 ++++++++++++++++++++++++++++-------------- R/tenvalplot.R |only R/tivi.R | 42 ++++++++++++++++++++++++++++-------------- R/twivi.R | 42 +++++++++++++++++++++++++++++------------- R/zzz.R | 2 +- inst/WORDLIST | 10 ++++++++++ man/fourvalplot.Rd |only man/persval.Rd | 34 ++++++++++++++++++++++------------ man/pvq21.Rd | 23 ++++++++++++++++++----- man/pvq40.Rd | 23 ++++++++++++++++++----- man/svs.Rd | 23 +++++++++++++++++------ man/tenvalplot.Rd |only man/tivi.Rd | 23 +++++++++++++++++------ man/twivi.Rd | 23 ++++++++++++++++++----- 22 files changed, 327 insertions(+), 140 deletions(-)
Title: Spatial Visualisation of Admixture on a Projected Map
Description: Visualise admixture as pie charts on a projected map, admixture as traditional structure barplots or facet barplots, and scatter plots from genotype principal components analysis. A 'shiny' app allows users to create admixture maps interactively. Jenkins TL (2024) <doi:10.1111/1755-0998.13943>.
Author: Tom Jenkins [aut, cre, cph]
Maintainer: Tom Jenkins <tom.l.jenkins@outlook.com>
Diff between mapmixture versions 1.1.3 dated 2024-05-16 and 1.1.4 dated 2024-09-25
DESCRIPTION | 8 MD5 | 18 - NEWS.md | 8 R/func_data_transformation.R | 318 ++++++++++++------------ R/func_mapmixture.R | 19 + R/func_process_input_data.R | 4 R/func_structure_plot.R | 567 +++++++++++++++++++++---------------------- README.md | 2 man/mapmixture.Rd | 11 man/structure_plot.Rd | 3 10 files changed, 503 insertions(+), 455 deletions(-)
Title: Make Plots that Glow
Description: Provides a framework for creating plots with glowing points.
Author: Travers Ching [aut, cre, cph]
Maintainer: Travers Ching <traversc@gmail.com>
Diff between glow versions 0.11.0 dated 2023-04-05 and 0.13.0 dated 2024-09-25
glow-0.11.0/glow/R/glow_functions.r |only glow-0.13.0/glow/ChangeLog |only glow-0.13.0/glow/DESCRIPTION | 12 - glow-0.13.0/glow/MD5 | 38 +-- glow-0.13.0/glow/NAMESPACE | 5 glow-0.13.0/glow/R/glow_pkg_functions.R |only glow-0.13.0/glow/R/zz_help_files.R | 67 ++++++ glow-0.13.0/glow/build/vignette.rds |binary glow-0.13.0/glow/inst/doc/vignette.R | 27 ++ glow-0.13.0/glow/inst/doc/vignette.html | 182 ++++++++++------- glow-0.13.0/glow/inst/doc/vignette.rmd | 28 ++ glow-0.13.0/glow/inst/examples/clifford_example.R | 2 glow-0.13.0/glow/inst/examples/examples.R | 28 +- glow-0.13.0/glow/inst/examples/examples_parse_data.R | 12 - glow-0.13.0/glow/inst/examples/gps_example.R | 4 glow-0.13.0/glow/inst/examples/notes.txt | 4 glow-0.13.0/glow/man/light_cool_colors.Rd |only glow-0.13.0/glow/man/relxy.Rd |only glow-0.13.0/glow/src/glow_functions.cpp | 8 glow-0.13.0/glow/vignettes/diamonds_vignette_cool.png |only glow-0.13.0/glow/vignettes/diamonds_vignette_dark.png |binary glow-0.13.0/glow/vignettes/diamonds_vignette_light.png |binary glow-0.13.0/glow/vignettes/vignette.rmd | 28 ++ 23 files changed, 324 insertions(+), 121 deletions(-)
Title: Multiple Summary Statistics for Binned Stats/Geometries
Description: Provides the ggplot binning layer stat_summaries_hex(),
which functions similar to its singular form,
but allows the use of multiple statistics per bin.
Those statistics can be mapped to multiple bin aesthetics.
Author: Philipp Angerer [aut, cre]
Maintainer: Philipp Angerer <phil.angerer@gmail.com>
Diff between ggplot.multistats versions 1.0.0 dated 2019-10-28 and 1.0.1 dated 2024-09-25
DESCRIPTION | 11 ++++---- MD5 | 8 +++--- R/stat_summaries_hex.r | 11 ++++---- README.md | 21 ++++++++++------ man/stat_summaries_hex.Rd | 57 +++++++++++++++++++++++++++++----------------- 5 files changed, 65 insertions(+), 43 deletions(-)
More information about ggplot.multistats at CRAN
Permanent link
Title: Diagnostics for OMOP Common Data Model Drug Records
Description: Ingredient specific diagnostics for drug exposure records in the Observational Medical Outcomes Partnership (OMOP) common data model.
Author: Ger Inberg [aut, cre] ,
Edward Burn [aut] ,
Theresa Burkard [aut] ,
Yuchen Guo [ctb] ,
Marti Catala [ctb] ,
Mike Du [ctb] ,
Xintong Li [ctb] ,
Ross Williams [ctb] ,
Erasmus MC [cph]
Maintainer: Ger Inberg <g.inberg@erasmusmc.nl>
Diff between DrugExposureDiagnostics versions 1.0.8 dated 2024-09-10 and 1.0.9 dated 2024-09-25
DrugExposureDiagnostics-1.0.8/DrugExposureDiagnostics/tests/testthat/test-CheckDrugSig.R |only DrugExposureDiagnostics-1.0.8/DrugExposureDiagnostics/tests/testthat/test-CheckVerbatimEndDate.R |only DrugExposureDiagnostics-1.0.8/DrugExposureDiagnostics/tests/testthat/test-MockDrugExposure.R |only DrugExposureDiagnostics-1.0.8/DrugExposureDiagnostics/tests/testthat/test-SummariseChecks.R |only DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/DESCRIPTION | 10 - DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/MD5 | 80 +++++----- DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/NAMESPACE | 1 DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/NEWS.md | 5 DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/R/checkDrugDose.R | 19 ++ DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/R/checkDrugsMissing.R | 5 DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/R/executeChecks.R | 10 - DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/R/mockDrugExposure.R | 1 DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/R/obscureCounts.R | 8 - DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/R/shiny.R |only DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/inst/doc/DiagnosticsSummary.html | 2 DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/inst/doc/DrugDose.html | 2 DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/inst/doc/DrugSig.html | 2 DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/inst/doc/DrugSourceConcepts.html | 2 DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/inst/doc/DrugTypes.html | 2 DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/inst/doc/IntroductionToDrugExposureDiagnostics.R | 7 DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/inst/doc/IntroductionToDrugExposureDiagnostics.Rmd | 10 + DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/inst/doc/IntroductionToDrugExposureDiagnostics.html | 23 ++ DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/inst/doc/Missingness.html | 4 DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/inst/doc/Routes.html | 2 DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/inst/doc/VerbatimEndDate.html | 2 DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/inst/shiny |only DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/man/checkDrugDose.Rd | 6 DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/man/executeChecks.Rd | 2 DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/man/executeChecksSingleIngredient.Rd | 2 DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/man/obscureCounts.Rd | 2 DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/man/viewResults.Rd |only DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/tests/testthat/test-ObscureCounts.R | 16 +- DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/tests/testthat/test-checkDrugDose.R | 38 +++- DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/tests/testthat/test-checkDrugExposureDuration.R | 2 DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/tests/testthat/test-checkDrugMissings.R | 8 - DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/tests/testthat/test-checkDrugSig.R |only DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/tests/testthat/test-checkVerbatimEndDate.R |only DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/tests/testthat/test-executeChecks.R | 8 + DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/tests/testthat/test-mockDrugExposure.R |only DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/tests/testthat/test-shiny.R |only DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/tests/testthat/test-summariseChecks.R |only DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/vignettes/IntroductionToDrugExposureDiagnostics.Rmd | 10 + 42 files changed, 193 insertions(+), 98 deletions(-)
More information about DrugExposureDiagnostics at CRAN
Permanent link
Title: Double Constrained Correspondence Analysis for Trait-Environment
Analysis in Ecology
Description: Double constrained correspondence analysis (dc-CA) analyzes
(multi-)trait (multi-)environment ecological data by using the 'vegan'
package and native R code. Throughout the two step algorithm of ter Braak
et al. (2018) is used. This algorithm combines and extends community-
(sample-) and species-level analyses, i.e. the usual community weighted
means (CWM)-based regression analysis and the species-level analysis of
species-niche centroids (SNC)-based regression analysis. The two steps use
canonical correspondence analysis to regress the abundance data on to the
traits and (weighted) redundancy analysis to regress the CWM of the
orthonormalized traits on to the environmental predictors. The function
dc_CA() has an option to divide the abundance data of a site by the site
total, giving equal site weights. This division has the advantage that the
multivariate analysis corresponds with an unweighted (multi-trait)
community-level analysis, instead of being weighted. The first step of
the al [...truncated...]
Author: Cajo J.F ter Braak [aut] ,
Bart-Jan van Rossum [aut, cre]
Maintainer: Bart-Jan van Rossum <bart-jan.vanrossum@wur.nl>
Diff between douconca versions 1.2.0 dated 2024-09-13 and 1.2.1 dated 2024-09-25
douconca-1.2.0/douconca/inst/tinytest/mod_dcca |only douconca-1.2.0/douconca/inst/tinytest/mod_wrda |only douconca-1.2.0/douconca/inst/tinytest/scores_wrda |only douconca-1.2.1/douconca/DESCRIPTION | 12 +-- douconca-1.2.1/douconca/MD5 | 36 +++++------ douconca-1.2.1/douconca/NEWS.md | 4 + douconca-1.2.1/douconca/R/anova.dcca.R | 2 douconca-1.2.1/douconca/R/anova.wrda.R | 4 - douconca-1.2.1/douconca/R/anova_species.R | 2 douconca-1.2.1/douconca/R/f_dc_CA.R | 16 +++-- douconca-1.2.1/douconca/R/get_Z_X_XZ_formula.R | 2 douconca-1.2.1/douconca/R/scores.dcca.R | 2 douconca-1.2.1/douconca/R/scores_dcca.R | 2 douconca-1.2.1/douconca/README.md | 7 ++ douconca-1.2.1/douconca/inst/doc/douconca.html | 56 +++++++++--------- douconca-1.2.1/douconca/inst/tinytest/scores_dcca |binary douconca-1.2.1/douconca/inst/tinytest/scores_wrda_abs |only douconca-1.2.1/douconca/inst/tinytest/test_dcca.R | 3 douconca-1.2.1/douconca/inst/tinytest/test_wrda.R | 6 - douconca-1.2.1/douconca/man/getPlotdata.Rd | 2 douconca-1.2.1/douconca/man/scores.dcca.Rd | 2 21 files changed, 86 insertions(+), 72 deletions(-)
Title: Build and Manipulate Study Cohorts Using a Common Data Model
Description: Create and manipulate study cohorts in data mapped to the
Observational Medical Outcomes Partnership Common Data Model.
Author: Edward Burn [aut, cre] ,
Marti Catala [aut] ,
Nuria Mercade-Besora [aut] ,
Marta Alcalde-Herraiz [aut] ,
Mike Du [aut] ,
Yuchen Guo [aut] ,
Xihang Chen [aut] ,
Kim Lopez [aut] ,
Elin Rowlands [aut]
Maintainer: Edward Burn <edward.burn@ndorms.ox.ac.uk>
Diff between CohortConstructor versions 0.2.2 dated 2024-07-31 and 0.3.0 dated 2024-09-25
CohortConstructor-0.2.2/CohortConstructor/R/assertFunctions.R |only CohortConstructor-0.2.2/CohortConstructor/R/requireCohortIntersectFlag.R |only CohortConstructor-0.2.2/CohortConstructor/R/requireConceptIntersectFlag.R |only CohortConstructor-0.2.2/CohortConstructor/R/requireIsFirstEntry.R |only CohortConstructor-0.2.2/CohortConstructor/R/requireTableIntersectFlag.R |only CohortConstructor-0.2.2/CohortConstructor/inst/doc/a02_applying_cohort_restrictions.R |only CohortConstructor-0.2.2/CohortConstructor/inst/doc/a02_applying_cohort_restrictions.Rmd |only CohortConstructor-0.2.2/CohortConstructor/inst/doc/a02_applying_cohort_restrictions.html |only CohortConstructor-0.2.2/CohortConstructor/inst/doc/a03_age_sex_matching.R |only CohortConstructor-0.2.2/CohortConstructor/inst/doc/a03_age_sex_matching.Rmd |only CohortConstructor-0.2.2/CohortConstructor/inst/doc/a03_age_sex_matching.html |only CohortConstructor-0.2.2/CohortConstructor/inst/doc/a04_cohort_manipulations.R |only CohortConstructor-0.2.2/CohortConstructor/inst/doc/a04_cohort_manipulations.Rmd |only CohortConstructor-0.2.2/CohortConstructor/inst/doc/a04_cohort_manipulations.html |only CohortConstructor-0.2.2/CohortConstructor/vignettes/a02_applying_cohort_restrictions.Rmd |only CohortConstructor-0.2.2/CohortConstructor/vignettes/a03_age_sex_matching.Rmd |only CohortConstructor-0.2.2/CohortConstructor/vignettes/a04_cohort_manipulations.Rmd |only CohortConstructor-0.3.0/CohortConstructor/DESCRIPTION | 20 CohortConstructor-0.3.0/CohortConstructor/MD5 | 252 +- CohortConstructor-0.3.0/CohortConstructor/NAMESPACE | 3 CohortConstructor-0.3.0/CohortConstructor/R/collapseCohorts.R | 64 CohortConstructor-0.3.0/CohortConstructor/R/conceptCohort.R | 342 ++- CohortConstructor-0.3.0/CohortConstructor/R/data.R |only CohortConstructor-0.3.0/CohortConstructor/R/demographicsCohort.R | 143 - CohortConstructor-0.3.0/CohortConstructor/R/documentationHelper.R |only 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|only CohortConstructor-0.3.0/CohortConstructor/tests/testthat/test-requireCohortIntersect.R | 37 CohortConstructor-0.3.0/CohortConstructor/tests/testthat/test-requireConceptIntersect.R | 26 CohortConstructor-0.3.0/CohortConstructor/tests/testthat/test-requireDateRange.R | 40 CohortConstructor-0.3.0/CohortConstructor/tests/testthat/test-requireDeathFlag.R | 18 CohortConstructor-0.3.0/CohortConstructor/tests/testthat/test-requireDemographics.R | 109 - CohortConstructor-0.3.0/CohortConstructor/tests/testthat/test-requireIsEntry.R |only CohortConstructor-0.3.0/CohortConstructor/tests/testthat/test-requireIsFirstEntry.R | 152 - CohortConstructor-0.3.0/CohortConstructor/tests/testthat/test-requireMinCohortCount.R |only CohortConstructor-0.3.0/CohortConstructor/tests/testthat/test-requireTableIntersect.R | 44 CohortConstructor-0.3.0/CohortConstructor/tests/testthat/test-sampleCohorts.R | 22 CohortConstructor-0.3.0/CohortConstructor/tests/testthat/test-stratifyCohorts.R | 39 CohortConstructor-0.3.0/CohortConstructor/tests/testthat/test-subsetCohorts.R | 93 CohortConstructor-0.3.0/CohortConstructor/tests/testthat/test-trimDemographics.R | 791 +++---- CohortConstructor-0.3.0/CohortConstructor/tests/testthat/test-unionCohorts.R | 101 CohortConstructor-0.3.0/CohortConstructor/tests/testthat/test-yearCohorts.R | 56 CohortConstructor-0.3.0/CohortConstructor/vignettes/a00_introduction.Rmd | 78 CohortConstructor-0.3.0/CohortConstructor/vignettes/a01_building_base_cohorts.Rmd | 192 - CohortConstructor-0.3.0/CohortConstructor/vignettes/a02_cohort_table_requirements.Rmd |only CohortConstructor-0.3.0/CohortConstructor/vignettes/a03_require_demographics.Rmd |only CohortConstructor-0.3.0/CohortConstructor/vignettes/a04_require_intersections.Rmd |only CohortConstructor-0.3.0/CohortConstructor/vignettes/a05_update_cohort_start_end.Rmd |only CohortConstructor-0.3.0/CohortConstructor/vignettes/a06_concatanate_cohorts.Rmd |only CohortConstructor-0.3.0/CohortConstructor/vignettes/a07_filter_cohorts.Rmd |only CohortConstructor-0.3.0/CohortConstructor/vignettes/a08_split_cohorts.Rmd |only CohortConstructor-0.3.0/CohortConstructor/vignettes/a09_combine_cohorts.Rmd |only CohortConstructor-0.3.0/CohortConstructor/vignettes/a10_match_cohorts.Rmd |only CohortConstructor-0.3.0/CohortConstructor/vignettes/a11_benchmark.Rmd |only 169 files changed, 4220 insertions(+), 3526 deletions(-)
More information about CohortConstructor at CRAN
Permanent link
Title: Data Source Agnostic Filtering Tools
Description: Common API for filtering data stored in different data models.
Provides multiple filter types and reproducible R code.
Works standalone or with 'shinyCohortBuilder' as the GUI for interactive Shiny apps.
Author: Krystian Igras [cre, aut],
Adam Forys [ctb]
Maintainer: Krystian Igras <krystian8207@gmail.com>
Diff between cohortBuilder versions 0.2.0 dated 2023-02-28 and 0.3.0 dated 2024-09-25
DESCRIPTION | 8 MD5 | 55 ++-- NAMESPACE | 6 NEWS.md | 5 R/bind_keys.R | 18 - R/cohort_methods.R | 35 +- R/data.R | 36 +-- R/filter.R | 53 ++++ R/hooks.R | 18 + R/source_methods.R | 28 +- R/source_tblist.R | 85 +++++++ R/step.R | 2 README.md | 26 +- inst/doc/binding-keys.html | 64 ++--- inst/doc/cohortBuilder.html | 369 +++++++++++++++---------------- inst/doc/custom-filters.html | 14 - inst/doc/managing-cohort.html | 85 +++---- man/binding-keys.Rd | 18 - man/cohort-methods.Rd | 18 - man/dot-print_filter.Rd |only man/figures/README-unnamed-chunk-8-1.png |binary man/filter-source-types.Rd | 20 + man/filter-types.Rd | 9 man/hooks.Rd | 18 + man/librarian.Rd | 36 +-- man/managing-cohort.Rd | 16 - man/managing-source.Rd | 10 man/source-layer.Rd | 18 - tests/testthat/test-filter.R | 44 +++ 29 files changed, 669 insertions(+), 445 deletions(-)
Title: The LIC for T Distribution Regression Analysis
Description: This comprehensive toolkit for T-distribution regression, known as the analysis of "TLIC" (T-distribution Linear regression Integrated Corrector), adopts ordinary least squares method and assumes that errors follow a T-distribution. This approach gives it an advantage when dealing with small samples or non-normal error distributions, and can provide more robust parameter estimation and hypothesis testing results.The philosophy of the package is described in Guo G. (2020) <doi:10.1080/02664763.2022.2053949>.
Author: Guangbao Guo [aut, cre] ,
Guofu Jing [aut]
Maintainer: Guangbao Guo <ggb11111111@163.com>
Diff between TLIC versions 0.1 dated 2024-09-15 and 0.2 dated 2024-09-25
DESCRIPTION | 8 ++-- MD5 | 12 +++--- NAMESPACE | 6 ++- R/TLIC.R | 77 ++++++++++++++++++++++------------------ R/terr.R | 113 ++++++++++++++++++++++++++++++++---------------------------- man/TLIC.Rd | 34 +++++++----------- man/terr.Rd | 45 ++++++++--------------- 7 files changed, 150 insertions(+), 145 deletions(-)
Title: Seasonality Variation Plots of Stock Prices and Cryptocurrencies
Description: The price action at any given time is determined by investor
sentiment and market conditions. Although there is no established principle,
over a long period of time, things often move with a certain periodicity.
This is sometimes referred to as anomaly.
The seasonPlot() function in this package calculates and visualizes the
average value of price movements over a year for any given period.
In addition, the monthly increase or decrease in price movement is
represented with a colored background.
This seasonPlot() function can use the same symbols as the 'quantmod' package
(e.g. ^IXIC, ^DJI, SPY, BTC-USD, and ETH-USD etc).
Author: Satoshi Kume [aut, cre]
Maintainer: Satoshi Kume <satoshi.kume.1984@gmail.com>
Diff between seasonalityPlot versions 1.2.1 dated 2024-02-19 and 1.3.1 dated 2024-09-25
DESCRIPTION | 11 +-- MD5 | 20 +++-- NAMESPACE | 1 R/CryptoRSIheatmap.R | 117 +++++++++++++++++++++++----------- R/seasonPlot.R | 100 +++++++++++++++++------------ README.md | 18 ++++- inst/extdata/coin_Rank_v2.Rds |only inst/extdata/proc.R |only inst/script/CryptoRSIheatmap_v1.2.1.R |only inst/script/RSIdivergencePlot.R |only man/CryptoRSIheatmap.Rd | 53 ++++++++------- man/seasonPlot.Rd | 77 ++++++++++++---------- tests |only 13 files changed, 246 insertions(+), 151 deletions(-)
More information about seasonalityPlot at CRAN
Permanent link
Title: Functional Help for Functions, Objects, and Packages
Description: Enhance R help system by fuzzy search and preview interface, pseudo-postfix operators, and more.
The `?.` pseudo-postfix operator and the `?` prefix operator displays documents and contents (source or structure) of objects simultaneously to help understanding the objects.
The `?p` pseudo-postfix operator displays package documents, and is shorter than help(package = foo).
Author: Atsushi Yasumoto [aut, cph, cre]
Maintainer: Atsushi Yasumoto <atusy.rpkg@gmail.com>
Diff between felp versions 0.5.0 dated 2024-04-18 and 0.6.0 dated 2024-09-25
DESCRIPTION | 16 +++--- MD5 | 12 ++--- NEWS.md | 10 ++++ R/fuzzyhelp.R | 125 +++++++++++++++++++++++++++++------------------------ README.md | 17 ++++++- build/vignette.rds |binary inst/doc/felp.html | 35 ++++++++------ 7 files changed, 128 insertions(+), 87 deletions(-)
Title: Corbae-Ouliaris Frequency Domain Filtering
Description: Corbae-Ouliaris frequency domain filtering. According to
Corbae and Ouliaris (2006) <doi:10.1017/CBO9781139164863.008>,
this is a solution for extracting cycles from time series, like
business cycles etc. when filtering. This method is valid for both
stationary and non-stationary time series.
Author: Christos Adam [aut, cre]
Maintainer: Christos Adam <econp266@econ.soc.uoc.gr>
Diff between corbouli versions 0.1.0 dated 2024-09-12 and 0.1.1 dated 2024-09-25
DESCRIPTION | 13 ++--- MD5 | 38 ++++++++------- NEWS.md | 14 +++++ R/corbae_ouliaris.R | 6 ++ README.md | 110 +++++++++++++++++++++++++++++++++------------ inst/doc/Introduction.Rmd | 84 +++++++++++++++++++++++++--------- inst/doc/Introduction.html | 71 ++++++++++++++++++++--------- man/corbae_ouliaris.Rd | 12 +++- man/dftse.Rd | 14 +++-- man/figures/figure1.png |binary man/figures/figure2.png |binary man/figures/figure3.png |binary man/figures/figure4.png |binary man/figures/figure5.png |only man/figures/figure6.png |only vignettes/Introduction.Rmd | 84 +++++++++++++++++++++++++--------- vignettes/figure1.png |binary vignettes/figure2.png |binary vignettes/figure3.png |binary vignettes/figure4.png |binary vignettes/figure5.png |only vignettes/figure6.png |only 22 files changed, 323 insertions(+), 123 deletions(-)
Title: Statistics Netherlands (CBS) Open Data API Client
Description: The data and meta data from Statistics
Netherlands (<https://www.cbs.nl>) can be browsed and downloaded. The client uses
the open data API of Statistics Netherlands.
Author: Edwin de Jonge [aut, cre],
Sara Houweling [ctb]
Maintainer: Edwin de Jonge <edwindjonge@gmail.com>
Diff between cbsodataR versions 1.0.1 dated 2024-01-08 and 1.1 dated 2024-09-25
DESCRIPTION | 8 - MD5 | 64 +++++----- NAMESPACE | 4 NEWS.md | 10 + R/add_column_labels.R | 15 ++ R/cbs-table.R | 2 R/cbs_add_unit_column.R |only R/cbs_default_selection.R | 41 +++---- R/cbs_download_data.R | 2 R/cbs_get_data.R | 7 + R/cbs_get_sf.R | 15 +- R/deeplink.R | 11 - R/util.R | 7 + build/vignette.rds |binary inst/doc/cbsodata.html | 134 +++++++++++++---------- inst/doc/maps.html | 14 +- inst/extra/cbsodataR.Rmd | 14 ++ man/cbs_add_date_column.Rd | 6 - man/cbs_add_label_columns.Rd | 6 - man/cbs_add_unit_column.Rd |only man/cbs_download_data.Rd | 7 - man/cbs_download_meta.Rd | 1 man/cbs_extract_table_id.Rd | 5 man/cbs_get_data.Rd | 1 man/cbs_get_data_from_link.Rd | 1 man/cbs_get_meta.Rd | 1 man/download_data-deprecated.Rd | 5 man/download_meta-deprecated.Rd | 1 man/get_data-deprecated.Rd | 1 man/get_meta-deprecated.Rd | 1 vignettes/cbsodataR.md | 64 +++++++--- vignettes/maps.md | 2 vignettes/maps_files/figure-gfm/map_manual-1.png |binary vignettes/maps_files/figure-gfm/plot_map-1.png |binary 34 files changed, 282 insertions(+), 168 deletions(-)
Title: Adaptive Smoothing of Digital Images
Description: Implements tools for manipulation of digital
images and the Propagation Separation approach
by Polzehl and Spokoiny (2006) <DOI:10.1007/s00440-005-0464-1>
for smoothing digital images, see Polzehl and Tabelow (2007)
<DOI:10.18637/jss.v019.i01>.
Author: Karsten Tabelow [aut, cre],
Joerg Polzehl [aut]
Maintainer: Karsten Tabelow <tabelow@wias-berlin.de>
Diff between adimpro versions 0.9.7 dated 2024-07-05 and 0.9.7.2 dated 2024-09-25
DESCRIPTION | 16 ++++++++++------ MD5 | 6 +++--- src/awsimage.f | 7 +++---- src/shrink.f | 12 ++++-------- 4 files changed, 20 insertions(+), 21 deletions(-)
Title: A Super K-Nearest Neighbor (SKNN) Classification Algorithm
Description: It's a Super K-Nearest Neighbor classification method with using kernel density to describe weight of the distance between a training observation and the testing sample.
Author: Yi Ya [aut, cre],
Nader Ebrahimi [aut],
Yoram Rubin [aut],
Jacob Zhang [aut]
Maintainer: Yi Ya <Yi.YA_yaya@hotmail.com>
Diff between SKNN versions 3.1 dated 2022-06-11 and 4.0 dated 2024-09-25
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- man/PCAy.Rd | 2 +- man/PCAyd-class.Rd | 2 +- man/SKNN-package.Rd | 6 +++--- man/SKNN.Rd | 2 +- 6 files changed, 15 insertions(+), 15 deletions(-)
Title: Compact Package Representations
Description: A tool, grammar, and standard to represent and exchange
R package source code as text files. Converts one or more source
packages to a text file and restores the package structures from the file.
Author: Nan Xiao [aut, cre] ,
Yilong Zhang [aut],
Keaven Anderson [aut],
Amin Shirazi [ctb],
Jeff Cheng [ctb],
Danfeng Fu [ctb],
Merck & Co., Inc., Rahway, NJ, USA and its affiliates [cph]
Maintainer: Nan Xiao <nan.xiao1@merck.com>
Diff between pkglite versions 0.2.2 dated 2024-02-21 and 0.2.3 dated 2024-09-25
DESCRIPTION | 8 MD5 | 38 ++-- NEWS.md | 10 + R/collate.R | 2 R/collection.R | 2 R/dictionary.R | 50 ++++- R/pack.R | 2 R/pkglite-package.R | 2 R/spec.R | 2 R/templates.R | 2 R/unpack.R | 2 R/utils-cli.R | 2 R/utils.R | 2 build/vignette.rds |binary inst/CITATION | 1 inst/doc/filecollection.html | 136 +++++++-------- inst/doc/filespec.html | 188 +++++++++++----------- inst/doc/pkglite.html | 128 +++++++------- tests/testthat/test-independent-test_dictionary.R | 48 +++-- tests/testthat/test-independent-test_templates.R | 18 +- 20 files changed, 347 insertions(+), 296 deletions(-)
Title: A Modern K-Means (MKMeans) Clustering Algorithm
Description: It's a Modern K-Means clustering algorithm allowing data of any number of dimensions, any initial center, and any number of clusters to expect.
Author: Yi Ya [aut, cre],
Nader Ebrahimi [aut],
Yoram Rubin [aut],
Jacob Zhang [aut]
Maintainer: Yi Ya <Yi.YA_yaya@hotmail.com>
Diff between MKMeans versions 2.1 dated 2022-06-12 and 3.0 dated 2024-09-25
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ man/C.f.Rd | 2 +- man/Dist.Rd | 2 +- man/MKMean-class.Rd | 4 ++-- man/MKMeans-package.Rd | 6 +++--- man/MKMeans.Rd | 2 +- 7 files changed, 18 insertions(+), 18 deletions(-)
Title: Functions for Optimal Non-Bipartite Matching
Description: Perform non-bipartite matching and matched randomization. A
"bipartite" matching utilizes two separate groups, e.g. smokers being
matched to nonsmokers or cases being matched to controls. A "non-bipartite"
matching creates mates from one big group, e.g. 100 hospitals being
randomized for a two-arm cluster randomized trial or 5000 children who
have been exposed to various levels of secondhand smoke and are being
paired to form a greater exposure vs. lesser exposure comparison. At the
core of a non-bipartite matching is a N x N distance matrix for N potential
mates. The distance between two units expresses a measure of similarity or
quality as mates (the lower the better). The 'gendistance()' and
'distancematrix()' functions assist in creating this. The 'nonbimatch()'
function creates the matching that minimizes the total sum of distances
between mates; hence, it is referred to as an "optimal" matching. The
'assign.grp()' function aids in performing a matched randomization. Note
bipartit [...truncated...]
Author: Cole Beck [aut, cre],
Bo Lu [aut],
Robert Greevy [aut]
Maintainer: Cole Beck <cole.beck@vumc.org>
Diff between nbpMatching versions 1.5.5 dated 2024-05-17 and 1.5.6 dated 2024-09-25
DESCRIPTION | 10 +++++----- MD5 | 22 +++++++++++----------- NEWS.md | 3 +++ R/fill.missing.R | 10 +++++----- R/gendistance.R | 4 ++-- R/nbpmatching-package.R | 2 +- R/qom.R | 9 ++++++--- man/fill.missing.Rd | 8 ++++---- man/gendistance.Rd | 2 +- man/nbpMatching-package.Rd | 4 ++-- man/qom.Rd | 4 ++-- src/fcorematch.f | 44 +++++++++++++++++++------------------------- 12 files changed, 61 insertions(+), 61 deletions(-)