Title: Analyze, Summarize, and Visualize Daily Streamflow Data
Description: The Flow Analysis Summary Statistics Tool for R, 'fasstr', provides various functions to tidy and screen daily stream discharge data, calculate and visualize various summary statistics and metrics, and compute annual trending and volume frequency analyses.
It features useful function arguments for filtering of and handling dates, customizing data and metrics, and the ability to pull daily data directly from the Water Survey of Canada hydrometric database (<https://collaboration.cmc.ec.gc.ca/cmc/hydrometrics/www/>).
Author: Jon Goetz [aut, cre] ,
Carl James Schwarz [aut],
Sam Albers [ctb] ,
Robin Pike [ctb],
Province of British Columbia [cph]
Maintainer: Jon Goetz <jon.goetz@gov.bc.ca>
Diff between fasstr versions 0.5.2 dated 2024-03-28 and 0.5.3 dated 2024-09-26
DESCRIPTION | 18 +- MD5 | 12 - NEWS.md | 11 + R/compute_frequency_analysis.R | 2 build/vignette.rds |binary inst/doc/fasstr_frequency_analysis.html | 24 +- inst/doc/fasstr_users_guide.html | 262 ++++++++++++++++---------------- 7 files changed, 170 insertions(+), 159 deletions(-)
Title: Implements Computerized Adaptive Testing Simulations
Description: Computerized Adaptive Testing simulations with dichotomous and polytomous items. Selects items with Maximum Fisher Information method or randomly, with or without constraints (content balancing and item exposure control). Evaluates the simulation results in terms of precision, item exposure, and test length. Inspired on Magis & Barrada (2017) <doi:10.18637/jss.v076.c01>.
Author: Alexandre Jaloto [aut, cre] ,
Ricardo Primi [ths]
Maintainer: Alexandre Jaloto <alexandrejaloto@gmail.com>
Diff between simCAT versions 1.0.0 dated 2024-03-08 and 1.0.1 dated 2024-09-26
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- NEWS.md | 4 ++++ 3 files changed, 11 insertions(+), 7 deletions(-)
Title: DNA Sequence Motifs
Description: Motifs within biological sequences show a significant role. This package utilizes a user-defined threshold value (window size and similarity) to create consensus segments or motifs through local alignment of dynamic programming with gap and it calculates the frequency of each identified motif, offering a detailed view of their prevalence within the dataset. It allows for thorough exploration and understanding of sequence patterns and their biological importance.
Author: Subham Ghosh [aut, cre],
UB Angadi [aut],
Md Yeasin [aut],
Dipro Sinha [aut],
Saikath Das [aut],
Mir Asif Iquebal [aut],
Sarika [aut]
Maintainer: Subham Ghosh <search4aghosh@gmail.com>
Diff between DNAmotif versions 0.1.0 dated 2024-06-04 and 0.1.1 dated 2024-09-26
DESCRIPTION | 14 +++++++++----- MD5 | 2 +- 2 files changed, 10 insertions(+), 6 deletions(-)
Title: Air Quality Data Analysis
Description: Utilities for working with hourly air quality monitoring data
with a focus on small particulates (PM2.5). A compact data model is
structured as a list with two dataframes. A 'meta' dataframe contains
spatial and measuring device metadata associated with deployments at known
locations. A 'data' dataframe contains a 'datetime' column followed by
columns of measurements associated with each "device-deployment".
Algorithms to calculate NowCast and the associated Air Quality Index (AQI)
are defined at the US Environmental Projection Agency AirNow program:
<https://document.airnow.gov/technical-assistance-document-for-the-reporting-of-daily-air-quailty.pdf>.
Author: Jonathan Callahan [aut, cre],
Spencer Pease [ctb],
Hans Martin [ctb],
Rex Thompson [ctb]
Maintainer: Jonathan Callahan <jonathan.s.callahan@gmail.com>
Diff between AirMonitor versions 0.4.0 dated 2024-02-10 and 0.4.2 dated 2024-09-26
AirMonitor-0.4.0/AirMonitor/R/AirMonitor.R |only AirMonitor-0.4.0/AirMonitor/man/AirMonitor.Rd |only AirMonitor-0.4.2/AirMonitor/DESCRIPTION | 10 AirMonitor-0.4.2/AirMonitor/MD5 | 74 - AirMonitor-0.4.2/AirMonitor/NEWS.md | 13 AirMonitor-0.4.2/AirMonitor/R/AirMonitor-package.R |only AirMonitor-0.4.2/AirMonitor/R/addAQILegend.R | 2 AirMonitor-0.4.2/AirMonitor/R/addAQILines.R | 2 AirMonitor-0.4.2/AirMonitor/R/addAQIStackedBar.R | 2 AirMonitor-0.4.2/AirMonitor/R/aqiCategories.R | 9 AirMonitor-0.4.2/AirMonitor/R/aqiColors.R | 2 AirMonitor-0.4.2/AirMonitor/R/monitor_aqi.R | 2 AirMonitor-0.4.2/AirMonitor/R/monitor_dailyBarplot.R | 4 AirMonitor-0.4.2/AirMonitor/R/monitor_dailyThreshold.R | 2 AirMonitor-0.4.2/AirMonitor/R/monitor_leaflet.R | 10 AirMonitor-0.4.2/AirMonitor/R/monitor_nowcast.R | 47 AirMonitor-0.4.2/AirMonitor/R/monitor_timeseriesPlot.R | 6 AirMonitor-0.4.2/AirMonitor/R/monitor_toAQCTable.R | 2 AirMonitor-0.4.2/AirMonitor/README.md | 5 AirMonitor-0.4.2/AirMonitor/inst/doc/AirMonitor.html | 740 ++++++++--- AirMonitor-0.4.2/AirMonitor/inst/doc/Data_Model.html | 730 +++++++--- AirMonitor-0.4.2/AirMonitor/man/AirFire_S3_archiveBaseUrl.Rd | 2 AirMonitor-0.4.2/AirMonitor/man/AirMonitor-package.Rd |only AirMonitor-0.4.2/AirMonitor/man/CONUS.Rd | 2 AirMonitor-0.4.2/AirMonitor/man/US_52.Rd | 2 AirMonitor-0.4.2/AirMonitor/man/US_AQI.Rd | 8 AirMonitor-0.4.2/AirMonitor/man/addAQILegend.Rd | 2 AirMonitor-0.4.2/AirMonitor/man/addAQILines.Rd | 2 AirMonitor-0.4.2/AirMonitor/man/addAQIStackedBar.Rd | 2 AirMonitor-0.4.2/AirMonitor/man/aqiCategories.Rd | 2 AirMonitor-0.4.2/AirMonitor/man/aqiColors.Rd | 2 AirMonitor-0.4.2/AirMonitor/man/coreMetadataNames.Rd | 2 AirMonitor-0.4.2/AirMonitor/man/monitor_aqi.Rd | 2 AirMonitor-0.4.2/AirMonitor/man/monitor_dailyBarplot.Rd | 2 AirMonitor-0.4.2/AirMonitor/man/monitor_dailyThreshold.Rd | 2 AirMonitor-0.4.2/AirMonitor/man/monitor_leaflet.Rd | 2 AirMonitor-0.4.2/AirMonitor/man/monitor_nowcast.Rd | 2 AirMonitor-0.4.2/AirMonitor/man/monitor_timeseriesPlot.Rd | 2 AirMonitor-0.4.2/AirMonitor/man/monitor_toAQCTable.Rd | 2 AirMonitor-0.4.2/AirMonitor/man/pollutantNames.Rd | 2 40 files changed, 1206 insertions(+), 498 deletions(-)
Title: Parametric Estimation and Sensitivity Analysis of Direct and
Indirect Effects
Description: We implement functions to estimate and perform sensitivity analysis to unobserved confounding of direct and indirect effects introduced in Lindmark, de Luna and Eriksson (2018) <doi:10.1002/sim.7620> and Lindmark (2022) <doi:10.1007/s10260-021-00611-4>. The estimation and sensitivity analysis are parametric, based on probit and/or linear regression models. Sensitivity analysis is implemented for unobserved confounding of the exposure-mediator, mediator-outcome and exposure-outcome relationships.
Author: Anita Lindmark [aut, cre]
Maintainer: Anita Lindmark <anita.lindmark@umu.se>
Diff between sensmediation versions 0.3.0 dated 2019-06-03 and 0.3.1 dated 2024-09-26
DESCRIPTION | 20 ++++++----- MD5 | 37 ++++++++++---------- NEWS.md | 6 +++ R/coefs.sensmed.R | 20 +++++------ R/sensmediation.R | 8 ++-- inst |only man/LogL.Rd | 48 +++++++++++++++++++------- man/ML.Rd | 6 +-- man/RSdata.Rd | 6 ++- man/calc.effects.Rd | 15 ++++++-- man/coefs.sensmed.Rd | 8 ++-- man/effects.Rd | 49 ++++++++++++++++++++++----- man/grr.Rd | 48 +++++++++++++++++++------- man/hess.Rd | 48 +++++++++++++++++++------- man/more.effects.Rd | 10 ++++- man/partdevs.Rd | 83 ++++++++++++++++++++++++++++++++++++++++------ man/plot.effectsMed.Rd | 14 ++++++- man/sensmediation.Rd | 33 +++++++++++++----- man/stderrs.Rd | 53 ++++++++++++++++++++++++----- man/summary.effectsMed.Rd | 3 - 20 files changed, 387 insertions(+), 128 deletions(-)
Title: Sparse Regression with Paired Covariates
Description: Implements sparse regression with paired covariates (<doi:10.1007/s11634-019-00375-6>). The paired lasso is designed for settings where each covariate in one set forms a pair with a covariate in the other set (one-to-one correspondence). For the optional correlation shrinkage, install ashr (<https://github.com/stephens999/ashr>) and CorShrink (<https://github.com/kkdey/CorShrink>) from GitHub (see README).
Author: Armin Rauschenberger [aut, cre]
Maintainer: Armin Rauschenberger <armin.rauschenberger@uni.lu>
Diff between palasso versions 0.0.9 dated 2024-02-15 and 1.0.0 dated 2024-09-26
DESCRIPTION | 24 ++++++++++----------- MD5 | 52 +++++++++++++++++++++++----------------------- NEWS.md | 4 +++ R/function.R | 44 +++++++++++++++++++++++++++++++++------ R/hidden.R | 2 + README.md | 52 +++++++++++++++++++++++++++++++--------------- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 16 +++++++++----- inst/doc/article.Rmd | 33 ++++++++++++++++++++++------- inst/doc/article.html | 55 ++++++++++++++++++++++++++++++++++++------------- inst/doc/vignette.Rmd | 16 ++++++++++++-- inst/doc/vignette.html | 6 ++--- man/arguments.Rd | 1 man/dot-args.Rd | 1 man/dot-combine.Rd | 1 man/dot-cor.Rd | 1 man/dot-cv.Rd | 1 man/dot-dims.Rd | 1 man/dot-extract.Rd | 1 man/dot-fit.Rd | 1 man/dot-folds.Rd | 1 man/dot-loss.Rd | 1 man/dot-weight.Rd | 1 man/palasso.Rd | 21 +++++++++++++----- vignettes/article.Rmd | 33 ++++++++++++++++++++++------- vignettes/vignette.Rmd | 16 ++++++++++++-- 27 files changed, 276 insertions(+), 109 deletions(-)
Title: Sean 'Lahman' Baseball Database
Description: Provides the tables from the 'Sean Lahman Baseball Database' as
a set of R data.frames. It uses the data on pitching, hitting and fielding
performance and other tables from 1871 through 2023, as recorded in the 2024
version of the database. Documentation examples show how many baseball
questions can be investigated.
Author: Michael Friendly [aut],
Chris Dalzell [cre, aut],
Martin Monkman [aut],
Dennis Murphy [aut],
Vanessa Foot [ctb],
Justeena Zaki-Azat [ctb],
Sean Lahman [cph]
Maintainer: Chris Dalzell <cdalzell@gmail.com>
Diff between Lahman versions 11.0-0 dated 2023-05-04 and 12.0-0 dated 2024-09-26
DESCRIPTION | 12 - MD5 | 145 +++++++------ NEWS.md | 3 build/vignette.rds |binary data/AllstarFull.RData |binary data/Appearances.RData |binary data/AwardsManagers.RData |binary data/AwardsPlayers.RData |binary data/AwardsShareManagers.RData |binary data/AwardsSharePlayers.RData |binary data/Batting.RData |binary data/BattingPost.RData |binary data/CollegePlaying.RData |binary data/Fielding.RData |binary data/FieldingOF.RData |binary data/FieldingOFsplit.RData |binary data/FieldingPost.RData |binary data/HallOfFame.RData |binary data/HomeGames.RData |binary data/LahmanData.RData |binary data/Managers.RData |binary data/ManagersHalf.RData |binary data/Parks.RData |binary data/People.RData |binary data/Pitching.RData |binary data/PitchingPost.RData |binary data/Salaries.RData |binary data/Schools.RData |binary data/SeriesPost.RData |binary data/Teams.RData |binary data/TeamsFranchises.RData |binary data/TeamsHalf.RData |binary data/battingLabels.RData |binary data/fieldingLabels.RData |binary data/pitchingLabels.RData |binary inst/doc/hits-by-type.html | 146 +++++++------- inst/doc/payroll.R | 6 inst/doc/payroll.Rmd | 2 inst/doc/payroll.html | 406 +++++++++++++++++++-------------------- inst/doc/run-scoring-trends.R | 6 inst/doc/run-scoring-trends.html | 72 +++--- inst/doc/strikeoutsandhr.html | 214 ++++++++++---------- inst/doc/vignette-intro.html | 4 inst/scripts/dataMapping.R |only inst/scripts/readLahman.R | 94 ++++----- man/AllstarFull.Rd | 4 man/Appearances.Rd | 4 man/AwardsManagers.Rd | 4 man/AwardsPlayers.Rd | 4 man/AwardsShareManagers.Rd | 4 man/AwardsSharePlayers.Rd | 4 man/Batting.Rd | 4 man/BattingPost.Rd | 4 man/CollegePlaying.Rd | 2 man/Fielding.Rd | 4 man/FieldingOF.Rd | 4 man/FieldingOFsplit.Rd | 4 man/FieldingPost.Rd | 4 man/HallOfFame.Rd | 4 man/HomeGames.Rd | 4 man/Lahman-package.Rd | 8 man/Managers.Rd | 4 man/ManagersHalf.Rd | 2 man/Parks.Rd | 4 man/People.Rd | 4 man/Pitching.Rd | 2 man/PitchingPost.Rd | 4 man/Salaries.Rd | 2 man/Schools.Rd | 4 man/SeriesPost.Rd | 4 man/Teams.Rd | 4 man/TeamsFranchises.Rd | 2 man/TeamsHalf.Rd | 2 vignettes/payroll.Rmd | 2 74 files changed, 607 insertions(+), 609 deletions(-)
Title: Score and Plot the Healthy Eating Index from NHANES Data
Description: Calculate and visualize Healthy Eating Index (HEI) scores
from National Health and Nutrition Examination Survey 24-hour dietary
recall data utilizing three methods recommended by the National Cancer
Institute (2024)
<https://epi.grants.cancer.gov/hei/hei-methods-and-calculations.html#:~:text=To%20use%20the%20simple%20HEI,the%20total%20scores%20across%20individuals.>.
Effortlessly analyze HEI scores across different demographic groups
and years.
Author: Vijetha Ramdas [aut, cre],
Berkeley Ho [aut],
Abhra Sarkar [aut]
Maintainer: Vijetha Ramdas <vramdas06@gmail.com>
Diff between heiscore versions 0.1.3 dated 2024-07-30 and 0.1.4 dated 2024-09-26
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 6 ++++++ R/plotScore.R | 28 ++++++++++++++-------------- 4 files changed, 26 insertions(+), 20 deletions(-)
Title: Generalized Linear Mixed Models using Template Model Builder
Description: Fit linear and generalized linear mixed models with various
extensions, including zero-inflation. The models are fitted using maximum
likelihood estimation via 'TMB' (Template Model Builder). Random effects are
assumed to be Gaussian on the scale of the linear predictor and are integrated
out using the Laplace approximation. Gradients are calculated using automatic
differentiation.
Author: Mollie Brooks [aut, cre] ,
Ben Bolker [aut] ,
Kasper Kristensen [aut],
Martin Maechler [aut] ,
Arni Magnusson [aut] ,
Maeve McGillycuddy [ctb],
Hans Skaug [aut] ,
Anders Nielsen [aut] ,
Casper Berg [aut] ,
Koen van Bentham [aut],
Nafis Sadat [ctb] ,
[...truncated...]
Maintainer: Mollie Brooks <mollieebrooks@gmail.com>
Diff between glmmTMB versions 1.1.9 dated 2024-03-20 and 1.1.10 dated 2024-09-26
glmmTMB-1.1.10/glmmTMB/DESCRIPTION | 21 glmmTMB-1.1.10/glmmTMB/MD5 | 197 +-- glmmTMB-1.1.10/glmmTMB/NAMESPACE | 51 glmmTMB-1.1.10/glmmTMB/R/Anova.R | 2 glmmTMB-1.1.10/glmmTMB/R/VarCorr.R | 21 glmmTMB-1.1.10/glmmTMB/R/data.R |only glmmTMB-1.1.10/glmmTMB/R/diagnose.R | 5 glmmTMB-1.1.10/glmmTMB/R/enum.R | 22 glmmTMB-1.1.10/glmmTMB/R/family.R | 63 glmmTMB-1.1.10/glmmTMB/R/glmmTMB.R | 655 ++++++---- glmmTMB-1.1.10/glmmTMB/R/methods.R | 317 +++- glmmTMB-1.1.10/glmmTMB/R/predict.R | 78 - glmmTMB-1.1.10/glmmTMB/R/priors.R | 38 glmmTMB-1.1.10/glmmTMB/R/profile.R | 8 glmmTMB-1.1.10/glmmTMB/R/utils.R | 473 +++++-- glmmTMB-1.1.10/glmmTMB/R/zzz.R | 11 glmmTMB-1.1.10/glmmTMB/build/partial.rdb |binary glmmTMB-1.1.10/glmmTMB/build/vignette.rds |binary glmmTMB-1.1.10/glmmTMB/data/spider_long.rda |only glmmTMB-1.1.10/glmmTMB/inst/Matrix-version | 2 glmmTMB-1.1.10/glmmTMB/inst/NEWS.Rd | 67 - glmmTMB-1.1.10/glmmTMB/inst/TMB-version | 2 glmmTMB-1.1.10/glmmTMB/inst/doc/covstruct.R | 85 - glmmTMB-1.1.10/glmmTMB/inst/doc/covstruct.html | 143 +- glmmTMB-1.1.10/glmmTMB/inst/doc/covstruct.rmd | 123 + glmmTMB-1.1.10/glmmTMB/inst/doc/glmmTMB.pdf |binary glmmTMB-1.1.10/glmmTMB/inst/doc/hacking.html | 4 glmmTMB-1.1.10/glmmTMB/inst/doc/mcmc.html | 8 glmmTMB-1.1.10/glmmTMB/inst/doc/miscEx.html | 4 glmmTMB-1.1.10/glmmTMB/inst/doc/model_evaluation.pdf |binary glmmTMB-1.1.10/glmmTMB/inst/doc/parallel.html | 4 glmmTMB-1.1.10/glmmTMB/inst/doc/priors.R | 49 glmmTMB-1.1.10/glmmTMB/inst/doc/priors.html | 59 glmmTMB-1.1.10/glmmTMB/inst/doc/priors.rmd | 49 glmmTMB-1.1.10/glmmTMB/inst/doc/sim.R | 9 glmmTMB-1.1.10/glmmTMB/inst/doc/sim.html | 25 glmmTMB-1.1.10/glmmTMB/inst/doc/sim.rmd | 18 glmmTMB-1.1.10/glmmTMB/inst/doc/troubleshooting.html | 12 glmmTMB-1.1.10/glmmTMB/inst/misc |only glmmTMB-1.1.10/glmmTMB/inst/test_data/models.rda |binary glmmTMB-1.1.10/glmmTMB/inst/vignette_data/cs_profile_plot.png |binary glmmTMB-1.1.10/glmmTMB/inst/vignette_data/mcmc.R | 2 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glmmTMB-1.1.10/glmmTMB/man/mkTMBStruc.Rd | 6 glmmTMB-1.1.10/glmmTMB/man/nbinom2.Rd | 22 glmmTMB-1.1.10/glmmTMB/man/omp_check.Rd | 6 glmmTMB-1.1.10/glmmTMB/man/predict.glmmTMB.Rd | 8 glmmTMB-1.1.10/glmmTMB/man/priors.Rd | 11 glmmTMB-1.1.10/glmmTMB/man/profile.glmmTMB.Rd | 4 glmmTMB-1.1.10/glmmTMB/man/ranef.glmmTMB.Rd | 6 glmmTMB-1.1.10/glmmTMB/man/residuals.glmmTMB.Rd | 9 glmmTMB-1.1.10/glmmTMB/man/set_simcodes.Rd |only glmmTMB-1.1.10/glmmTMB/man/sigma.glmmTMB.Rd | 1 glmmTMB-1.1.10/glmmTMB/man/simulate.glmmTMB.Rd | 4 glmmTMB-1.1.10/glmmTMB/man/simulate_new.Rd | 33 glmmTMB-1.1.10/glmmTMB/man/spider_long.Rd |only glmmTMB-1.1.10/glmmTMB/man/startParams.Rd | 8 glmmTMB-1.1.10/glmmTMB/src/Makevars | 6 glmmTMB-1.1.10/glmmTMB/src/distrib.h | 135 ++ glmmTMB-1.1.10/glmmTMB/src/glmmTMB.cpp | 337 ++++- glmmTMB-1.1.10/glmmTMB/src/utils.cpp | 4 glmmTMB-1.1.10/glmmTMB/tests/testthat/setup_makeex.R | 2 glmmTMB-1.1.10/glmmTMB/tests/testthat/test-VarCorr.R | 32 glmmTMB-1.1.10/glmmTMB/tests/testthat/test-basics.R | 6 glmmTMB-1.1.10/glmmTMB/tests/testthat/test-checkRank.R | 8 glmmTMB-1.1.10/glmmTMB/tests/testthat/test-control.R | 6 glmmTMB-1.1.10/glmmTMB/tests/testthat/test-families.R | 46 glmmTMB-1.1.10/glmmTMB/tests/testthat/test-mapequal.R |only glmmTMB-1.1.10/glmmTMB/tests/testthat/test-mapopt.R | 1 glmmTMB-1.1.10/glmmTMB/tests/testthat/test-methods.R | 112 + glmmTMB-1.1.10/glmmTMB/tests/testthat/test-priors.R | 49 glmmTMB-1.1.10/glmmTMB/tests/testthat/test-propto.R |only glmmTMB-1.1.10/glmmTMB/tests/testthat/test-reml.R | 15 glmmTMB-1.1.10/glmmTMB/tests/testthat/test-rr.R | 24 glmmTMB-1.1.10/glmmTMB/tests/testthat/test-simulate.R |only glmmTMB-1.1.10/glmmTMB/tests/testthat/test-simulate_new.R |only glmmTMB-1.1.10/glmmTMB/tests/testthat/test-smooths.R | 58 glmmTMB-1.1.10/glmmTMB/tests/testthat/test-utils.R | 27 glmmTMB-1.1.10/glmmTMB/tests/testthat/test-varstruc.R | 16 glmmTMB-1.1.10/glmmTMB/vignettes/covstruct.rmd | 123 + glmmTMB-1.1.10/glmmTMB/vignettes/covstruct_files |only glmmTMB-1.1.10/glmmTMB/vignettes/glmmTMB.bib | 1 glmmTMB-1.1.10/glmmTMB/vignettes/priors.rmd | 49 glmmTMB-1.1.10/glmmTMB/vignettes/sim.rmd | 18 glmmTMB-1.1.9/glmmTMB/R/reformulas.R |only glmmTMB-1.1.9/glmmTMB/man/RHSForm.Rd |only glmmTMB-1.1.9/glmmTMB/man/checkDepPackageVersion.Rd |only glmmTMB-1.1.9/glmmTMB/man/expandGrpVar.Rd |only glmmTMB-1.1.9/glmmTMB/man/findReTrmClasses.Rd |only glmmTMB-1.1.9/glmmTMB/man/formfuns.Rd |only glmmTMB-1.1.9/glmmTMB/man/splitForm.Rd |only glmmTMB-1.1.9/glmmTMB/man/sub_specials.Rd |only 109 files changed, 2813 insertions(+), 1111 deletions(-)
Title: Penalised Regression for Dichotomised Outcomes
Description: Implements lasso and ridge regression for dichotomised outcomes (<doi:10.1080/02664763.2023.2233057>), i.e., numerical outcomes that were transformed to binary outcomes. Such artificial binary outcomes indicate whether an underlying measurement is greater than a threshold.
Author: Armin Rauschenberger [aut, cre]
Maintainer: Armin Rauschenberger <armin.rauschenberger@uni.lu>
Diff between cornet versions 0.0.9 dated 2023-08-11 and 1.0.0 dated 2024-09-26
cornet-0.0.9/cornet/inst/doc/article.R |only cornet-1.0.0/cornet/DESCRIPTION | 25 ++++++------ cornet-1.0.0/cornet/MD5 | 30 +++++++------- cornet-1.0.0/cornet/NEWS.md | 4 + cornet-1.0.0/cornet/R/functions.R | 15 +++++-- cornet-1.0.0/cornet/README.md | 54 ++++++++++++++------------ cornet-1.0.0/cornet/build/partial.rdb |binary cornet-1.0.0/cornet/build/vignette.rds |binary cornet-1.0.0/cornet/inst/CITATION |only cornet-1.0.0/cornet/inst/doc/application.html | 2 cornet-1.0.0/cornet/inst/doc/article.Rmd | 18 +++++--- cornet-1.0.0/cornet/inst/doc/article.html | 17 +++----- cornet-1.0.0/cornet/inst/doc/vignette.Rmd | 6 ++ cornet-1.0.0/cornet/inst/doc/vignette.html | 23 +++++------ cornet-1.0.0/cornet/man/cornet.Rd | 15 +++++-- cornet-1.0.0/cornet/vignettes/article.Rmd | 18 +++++--- cornet-1.0.0/cornet/vignettes/vignette.Rmd | 6 ++ 17 files changed, 137 insertions(+), 96 deletions(-)
Title: ArcGIS Utility Functions
Description: Developer oriented utility functions designed to be used as
the building blocks of R packages that work with ArcGIS Location
Services. It provides functionality for authorization, Esri JSON
construction and parsing, as well as other utilities pertaining to
geometry and Esri type conversions. To support 'ArcGIS Pro' users,
authorization can be done via 'arcgisbinding'. Installation
instructions for 'arcgisbinding' can be found at
<https://r.esri.com/r-bridge-site/docs/installation.html>.
Author: Josiah Parry [aut, cre] ,
Kenneth Vernon [ctb] ,
Martha Bass [ctb]
Maintainer: Josiah Parry <josiah.parry@gmail.com>
Diff between arcgisutils versions 0.3.0 dated 2024-05-09 and 0.3.1 dated 2024-09-26
arcgisutils-0.3.0/arcgisutils/configure.ac |only arcgisutils-0.3.1/arcgisutils/DESCRIPTION | 12 arcgisutils-0.3.1/arcgisutils/MD5 | 28 arcgisutils-0.3.1/arcgisutils/NEWS.md | 5 arcgisutils-0.3.1/arcgisutils/README.md | 28 arcgisutils-0.3.1/arcgisutils/configure | 2550 ---------- arcgisutils-0.3.1/arcgisutils/configure.win | 2549 --------- arcgisutils-0.3.1/arcgisutils/man/figures |only arcgisutils-0.3.1/arcgisutils/src/Makevars | 30 arcgisutils-0.3.1/arcgisutils/src/Makevars.win | 38 arcgisutils-0.3.1/arcgisutils/src/rust/Cargo.lock | 181 arcgisutils-0.3.1/arcgisutils/src/rust/Cargo.toml | 5 arcgisutils-0.3.1/arcgisutils/src/rust/src/to/attributes.rs | 4 arcgisutils-0.3.1/arcgisutils/src/rust/vendor-config.toml | 4 arcgisutils-0.3.1/arcgisutils/src/rust/vendor.tar.xz |binary arcgisutils-0.3.1/arcgisutils/tests/testthat/test-json-conversions.R |only arcgisutils-0.3.1/arcgisutils/tools/msrv.R |only 17 files changed, 192 insertions(+), 5242 deletions(-)
Title: Reproducible Data Science Environments with 'Nix'
Description: Simplifies the creation of reproducible data science environments
using the 'Nix' package manager, as described in
Dolstra (2006) <ISBN 90-393-4130-3>. The included `rix()`
function generates a complete description of the environment as a
`default.nix` file, which can then be built using 'Nix'. This results in
project specific software environments with pinned versions of R, packages,
linked system dependencies, and other tools. Additional helpers make it easy
to run R code in 'Nix' software environments for testing and production.
Author: Bruno Rodrigues [aut, cre] ,
Philipp Baumann [aut] ,
David Watkins [rev] for
rOpenSci, see
<https://github.com/ropensci/software-review/issues/625>),
Jacob Wujiciak-Jens [rev] for rOpenSci, see
<https://github.com/ropensci/software-review/issues/62 [...truncated...]
Maintainer: Bruno Rodrigues <bruno@brodrigues.co>
Diff between rix versions 0.12.1 dated 2024-09-25 and 0.12.3 dated 2024-09-26
DESCRIPTION | 28 ++-- MD5 | 14 +- NEWS.md | 65 ++++++---- README.md | 9 - inst/doc/z-advanced-topic-reproducible-analytical-pipelines-with-nix.html | 2 inst/doc/z-advanced-topic-running-r-or-shell-code-in-nix-from-r.html | 6 inst/extdata/default.nix | 8 - man/figures/logo.png |binary 8 files changed, 75 insertions(+), 57 deletions(-)
Title: UCA Rcmdr Plug-in
Description: Some extensions to Rcmdr (R Commander), randomness test,
variance test for one normal sample and predictions using active model,
made by R-UCA project and used in teaching statistics at University of Cadiz (UCA).
Author: Manuel Munoz-Marquez [aut, cre]
Maintainer: Manuel Munoz-Marquez <manuel.munoz@uca.es>
Diff between RcmdrPlugin.UCA versions 5.1-1 dated 2022-05-04 and 5.1-2 dated 2024-09-26
ChangeLog | 3 DESCRIPTION | 20 - MD5 | 36 +- NAMESPACE | 6 R/RcmdrPlugin.UCA.R | 15 build/vignette.rds |binary inst/doc/additions.R | 18 - inst/doc/additions.html | 408 +++++++++++++++----------- inst/doc/adiciones.R | 18 - inst/doc/adiciones.html | 438 +++++++++++++++++----------- inst/etc/menus.txt | 8 inst/po/es/LC_MESSAGES/R-RcmdrPlugin.UCA.mo |binary man/RcmdrPlugin.UCA-internal.Rd | 4 man/RcmdrPlugin.UCA-package.Rd | 4 man/RcmdrPlugin.UCA.es-package.Rd | 4 po/R-RcmdrPlugin.UCA-es.mo |binary po/R-RcmdrPlugin.UCA-es.po | 24 + po/R-RcmdrPlugin.UCA.mo |binary po/R-RcmdrPlugin.UCA.pot | 22 + 19 files changed, 646 insertions(+), 382 deletions(-)
More information about RcmdrPlugin.UCA at CRAN
Permanent link
Title: Regularization Paths for Lasso or Elastic-Net Penalized Huber
Loss Regression and Quantile Regression
Description: Offers efficient algorithms for fitting regularization paths for lasso or elastic-net penalized regression models with Huber loss, quantile loss or squared loss. Reference: Congrui Yi and Jian Huang (2017) <doi:10.1080/10618600.2016.1256816>.
Author: Congrui Yi [aut, cre]
Maintainer: Congrui Yi <eric.ycr@gmail.com>
Diff between hqreg versions 1.4 dated 2017-02-16 and 1.4-1 dated 2024-09-26
hqreg-1.4-1/hqreg/DESCRIPTION | 20 +- hqreg-1.4-1/hqreg/MD5 | 22 +- hqreg-1.4-1/hqreg/build |only hqreg-1.4-1/hqreg/man/cv.hqreg.Rd | 10 - hqreg-1.4-1/hqreg/man/hqreg-package.Rd | 15 - hqreg-1.4-1/hqreg/man/hqreg.Rd | 10 - hqreg-1.4-1/hqreg/man/hqreg_raw.Rd | 10 - hqreg-1.4-1/hqreg/man/plot.cv.hqreg.Rd | 10 - hqreg-1.4-1/hqreg/man/plot.hqreg.Rd | 10 - hqreg-1.4-1/hqreg/man/predict.cv.hqreg.Rd | 10 - hqreg-1.4-1/hqreg/man/predict.hqreg.Rd | 10 - hqreg-1.4-1/hqreg/src/hqreg.c | 226 +++++++++++++++--------------- hqreg-1.4/hqreg/README.md |only 13 files changed, 178 insertions(+), 175 deletions(-)
Title: 'Tabler' API for 'Shiny'
Description: 'R' interface to the 'Tabler' HTML template. See more here <https://tabler.io>.
'tablerDash' is a light 'Bootstrap 4' dashboard template. There are different
layouts available such as a one page dashboard or a multi page template,
where the navigation menu is contained in the navigation bar.
Author: David Granjon [aut, cre],
RinteRface [cph],
codecalm [ctb, cph] ,
Winston Chang [ctb, cph]
Maintainer: David Granjon <dgranjon@ymail.com>
Diff between tablerDash versions 0.1.0 dated 2019-03-08 and 0.1.5 dated 2024-09-26
tablerDash-0.1.0/tablerDash/inst/examples/app.R |only tablerDash-0.1.0/tablerDash/inst/examples/tabs |only tablerDash-0.1.5/tablerDash/DESCRIPTION | 17 +-- tablerDash-0.1.5/tablerDash/MD5 | 38 ++++---- tablerDash-0.1.5/tablerDash/NEWS.md | 14 +++ tablerDash-0.1.5/tablerDash/R/cards.R | 7 + tablerDash-0.1.5/tablerDash/R/sysdata.rda |only tablerDash-0.1.5/tablerDash/R/utils.R | 43 +++++++++ tablerDash-0.1.5/tablerDash/README.md | 63 +++++++------- tablerDash-0.1.5/tablerDash/inst/examples/shinylive |only tablerDash-0.1.5/tablerDash/inst/shinylive |only tablerDash-0.1.5/tablerDash/inst/tablerDash-0.1.0/core.js | 5 - tablerDash-0.1.5/tablerDash/man/create_app_link.Rd |only tablerDash-0.1.5/tablerDash/man/tablerAvatar.Rd | 3 tablerDash-0.1.5/tablerDash/man/tablerBlogCard.Rd | 14 ++- tablerDash-0.1.5/tablerDash/man/tablerCard.Rd | 18 +++- tablerDash-0.1.5/tablerDash/man/tablerDashPage.Rd | 10 +- tablerDash-0.1.5/tablerDash/man/tablerDropdownItem.Rd | 10 +- tablerDash-0.1.5/tablerDash/man/tablerInfoCard.Rd | 3 tablerDash-0.1.5/tablerDash/man/tablerMediaCard.Rd | 11 ++ tablerDash-0.1.5/tablerDash/man/tablerProfileCard.Rd | 10 +- tablerDash-0.1.5/tablerDash/man/tablerTag.Rd | 10 +- 22 files changed, 195 insertions(+), 81 deletions(-)
Title: Solution Paths of Sparse High-Dimensional Support Vector Machine
with Lasso or Elastic-Net Regularization
Description: Offers a fast algorithm for fitting solution paths of sparse SVM models with lasso or elastic-net regularization. Reference: Congrui Yi and Jian Huang (2017) <doi:10.1080/10618600.2016.1256816>.
Author: Congrui Yi [aut, cre],
Yaohui Zeng [aut]
Maintainer: Congrui Yi <eric.ycr@gmail.com>
Diff between sparseSVM versions 1.1-6 dated 2018-06-02 and 1.1-7 dated 2024-09-26
sparseSVM-1.1-6/sparseSVM/src/initialize_svm.c |only sparseSVM-1.1-7/sparseSVM/DESCRIPTION | 24 +++++--- sparseSVM-1.1-7/sparseSVM/MD5 | 9 +-- sparseSVM-1.1-7/sparseSVM/build |only sparseSVM-1.1-7/sparseSVM/man/sparseSVM-package.Rd | 8 +- sparseSVM-1.1-7/sparseSVM/src/init.c |only sparseSVM-1.1-7/sparseSVM/src/sparseSVM.c | 61 ++++++++++----------- 7 files changed, 56 insertions(+), 46 deletions(-)
Title: Univariate and Multivariate Spatial Modeling of Species
Abundance
Description: Fits single-species (univariate) and multi-species (multivariate) non-spatial and spatial abundance models in a Bayesian framework using Markov Chain Monte Carlo (MCMC). Spatial models are fit using Nearest Neighbor Gaussian Processes (NNGPs). Details on NNGP models are given in Datta, Banerjee, Finley, and Gelfand (2016) <doi:10.1080/01621459.2015.1044091> and Finley, Datta, and Banerjee (2022) <doi:10.18637/jss.v103.i05>. Fits single-species and multi-species spatial and non-spatial versions of generalized linear mixed models (Gaussian, Poisson, Negative Binomial), N-mixture models (Royle 2004 <doi:10.1111/j.0006-341X.2004.00142.x>) and hierarchical distance sampling models (Royle, Dawson, Bates (2004) <doi:10.1890/03-3127>). Multi-species spatial models are fit using a spatial factor modeling approach with NNGPs for computational efficiency.
Author: Jeffrey Doser [aut, cre],
Andrew Finley [aut]
Maintainer: Jeffrey Doser <jwdoser@ncsu.edu>
Diff between spAbundance versions 0.1.3 dated 2024-04-08 and 0.2.0 dated 2024-09-26
spAbundance-0.1.3/spAbundance/src/spAbundNNGPPredict.cpp |only spAbundance-0.2.0/spAbundance/DESCRIPTION | 17 spAbundance-0.2.0/spAbundance/MD5 | 156 spAbundance-0.2.0/spAbundance/NEWS.md | 13 spAbundance-0.2.0/spAbundance/R/DS.R | 10 spAbundance-0.2.0/spAbundance/R/NMix.R | 12 spAbundance-0.2.0/spAbundance/R/abund.R | 8 spAbundance-0.2.0/spAbundance/R/abundGaussian.R | 16 spAbundance-0.2.0/spAbundance/R/generics.R | 526 +- spAbundance-0.2.0/spAbundance/R/lfMsAbund.R | 12 spAbundance-0.2.0/spAbundance/R/lfMsAbundGaussian.R | 10 spAbundance-0.2.0/spAbundance/R/lfMsDS.R | 13 spAbundance-0.2.0/spAbundance/R/lfMsNMix.R | 14 spAbundance-0.2.0/spAbundance/R/msAbund.R | 8 spAbundance-0.2.0/spAbundance/R/msAbundGaussian.R | 8 spAbundance-0.2.0/spAbundance/R/msDS.R | 8 spAbundance-0.2.0/spAbundance/R/msNMix.R | 84 spAbundance-0.2.0/spAbundance/R/sfMsAbund.R | 10 spAbundance-0.2.0/spAbundance/R/sfMsAbundGaussian.R | 8 spAbundance-0.2.0/spAbundance/R/sfMsDS.R | 22 spAbundance-0.2.0/spAbundance/R/sfMsNMix.R | 12 spAbundance-0.2.0/spAbundance/R/simAbund.R | 35 spAbundance-0.2.0/spAbundance/R/simNMix.R | 24 spAbundance-0.2.0/spAbundance/R/simTNMix.R |only spAbundance-0.2.0/spAbundance/R/spAbund.R | 8 spAbundance-0.2.0/spAbundance/R/spAbundGaussian.R | 20 spAbundance-0.2.0/spAbundance/R/spDS.R | 14 spAbundance-0.2.0/spAbundance/R/spNMix.R | 24 spAbundance-0.2.0/spAbundance/R/svcAbund.R | 1827 +++++----- spAbundance-0.2.0/spAbundance/R/svcAbundGaussian.R |only spAbundance-0.2.0/spAbundance/R/svcMsAbund.R | 1072 ----- spAbundance-0.2.0/spAbundance/R/svcMsAbundGaussian.R |only spAbundance-0.2.0/spAbundance/README.md | 38 spAbundance-0.2.0/spAbundance/inst/CITATION | 34 spAbundance-0.2.0/spAbundance/man/DS.Rd | 165 spAbundance-0.2.0/spAbundance/man/lfMsNMix.Rd | 152 spAbundance-0.2.0/spAbundance/man/msNMix.Rd | 136 spAbundance-0.2.0/spAbundance/man/predict.svcAbund.Rd | 30 spAbundance-0.2.0/spAbundance/man/sfMsAbund.Rd | 213 - spAbundance-0.2.0/spAbundance/man/simAbund.Rd | 16 spAbundance-0.2.0/spAbundance/man/spAbund.Rd | 221 - spAbundance-0.2.0/spAbundance/man/spDS.Rd | 213 - spAbundance-0.2.0/spAbundance/man/spNMix.Rd | 227 - spAbundance-0.2.0/spAbundance/man/svcAbund.Rd | 218 - spAbundance-0.2.0/spAbundance/man/svcMsAbund.Rd | 252 - spAbundance-0.2.0/spAbundance/src/DS.cpp | 373 +- spAbundance-0.2.0/spAbundance/src/NMix.cpp | 333 - spAbundance-0.2.0/spAbundance/src/abund.cpp | 221 - spAbundance-0.2.0/spAbundance/src/abundGaussian.cpp | 267 - spAbundance-0.2.0/spAbundance/src/checkAlphaDS.cpp | 89 spAbundance-0.2.0/spAbundance/src/checkMSAlphaDS.cpp | 133 spAbundance-0.2.0/spAbundance/src/init.cpp | 7 spAbundance-0.2.0/spAbundance/src/lfMsAbund.cpp | 417 +- spAbundance-0.2.0/spAbundance/src/lfMsAbundGaussian.cpp | 409 +- spAbundance-0.2.0/spAbundance/src/lfMsDS.cpp | 665 +-- spAbundance-0.2.0/spAbundance/src/lfMsNMix.cpp | 599 +-- spAbundance-0.2.0/spAbundance/src/mkSpCov.cpp | 39 spAbundance-0.2.0/spAbundance/src/msAbund.cpp | 341 - spAbundance-0.2.0/spAbundance/src/msAbundGaussian.cpp | 333 - spAbundance-0.2.0/spAbundance/src/msDS.cpp | 595 +-- spAbundance-0.2.0/spAbundance/src/msNMix.cpp | 639 +-- spAbundance-0.2.0/spAbundance/src/nn.cpp | 107 spAbundance-0.2.0/spAbundance/src/sfMsAbundGaussianNNGP.cpp | 557 +-- spAbundance-0.2.0/spAbundance/src/sfMsAbundNNGP.cpp | 627 +-- spAbundance-0.2.0/spAbundance/src/sfMsAbundNNGPPredict.cpp | 107 spAbundance-0.2.0/spAbundance/src/sfMsDSNNGP.cpp | 783 ++-- spAbundance-0.2.0/spAbundance/src/sfMsNMixNNGP.cpp | 723 +-- spAbundance-0.2.0/spAbundance/src/sfMsNMixNNGPPredict.cpp | 103 spAbundance-0.2.0/spAbundance/src/spAbundGaussianNNGP.cpp | 85 spAbundance-0.2.0/spAbundance/src/spAbundNNGP.cpp | 371 +- spAbundance-0.2.0/spAbundance/src/spAbundance.h | 770 ++-- spAbundance-0.2.0/spAbundance/src/spDSNNGP.cpp | 537 +- spAbundance-0.2.0/spAbundance/src/spNMixNNGP.cpp | 473 +- spAbundance-0.2.0/spAbundance/src/spNMixNNGPPredict.cpp | 105 spAbundance-0.2.0/spAbundance/src/svcAbundGaussianNNGP.cpp |only spAbundance-0.2.0/spAbundance/src/svcAbundGaussianNNGPPredict.cpp |only spAbundance-0.2.0/spAbundance/src/svcAbundNNGP.cpp | 1205 +++--- spAbundance-0.2.0/spAbundance/src/svcAbundNNGPPredict.cpp | 264 - spAbundance-0.2.0/spAbundance/src/svcMsAbundGaussianNNGP.cpp | 593 +-- spAbundance-0.2.0/spAbundance/src/svcMsAbundGaussianNNGPPredict.cpp | 139 spAbundance-0.2.0/spAbundance/src/util.cpp | 249 - spAbundance-0.2.0/spAbundance/src/waicAbund.cpp | 37 82 files changed, 9367 insertions(+), 9834 deletions(-)
Title: Inference Using Simulation
Description: Implements functions for simulation-based inference. In particular, implements functions to perform likelihood inference from data summaries whose distributions are simulated. The package implements more advanced methods than the ones first described in: Rousset, Gouy, Almoyna and Courtiol (2017) <doi:10.1111/1755-0998.12627>.
Author: Francois Rousset [aut, cre, cph]
Maintainer: Francois Rousset <francois.rousset@umontpellier.fr>
Diff between Infusion versions 2.1.0 dated 2023-05-03 and 2.2.0 dated 2024-09-26
Infusion-2.1.0/Infusion/R/generate_data.R |only Infusion-2.1.0/Infusion/R/minImIze.R |only Infusion-2.1.0/Infusion/R/write_workflow.R |only Infusion-2.1.0/Infusion/man/get_LRboot.Rd |only Infusion-2.1.0/Infusion/man/infer_jointDens.Rd |only Infusion-2.1.0/Infusion/man/write_workflow.Rd |only Infusion-2.1.0/Infusion/tests/testthat/test-latent.R |only Infusion-2.2.0/Infusion/DESCRIPTION | 21 Infusion-2.2.0/Infusion/MD5 | 146 Infusion-2.2.0/Infusion/NAMESPACE | 49 Infusion-2.2.0/Infusion/R/MAF.R |only Infusion-2.2.0/Infusion/R/MAF_wrappers.R |only Infusion-2.2.0/Infusion/R/MSL.R | 543 ++ Infusion-2.2.0/Infusion/R/Rmixmod.R | 383 + Infusion-2.2.0/Infusion/R/SLik.R | 54 Infusion-2.2.0/Infusion/R/SLikSQuant.R | 897 +++- Infusion-2.2.0/Infusion/R/add_simulation.R | 157 Infusion-2.2.0/Infusion/R/bootLRT.R | 404 + Infusion-2.2.0/Infusion/R/calc_all_slices.R | 25 Infusion-2.2.0/Infusion/R/confintLR.SLik.R | 114 Infusion-2.2.0/Infusion/R/coresWrapper.R | 71 Infusion-2.2.0/Infusion/R/extractors.R | 148 Infusion-2.2.0/Infusion/R/gllim.R | 134 Infusion-2.2.0/Infusion/R/goodness.R | 96 Infusion-2.2.0/Infusion/R/infer_logLs.R | 15 Infusion-2.2.0/Infusion/R/infer_surface.R | 22 Infusion-2.2.0/Infusion/R/jointDens.R | 2181 +++++++--- Infusion-2.2.0/Infusion/R/latent.R |only Infusion-2.2.0/Infusion/R/mclust.R | 137 Infusion-2.2.0/Infusion/R/newParameters.R | 16 Infusion-2.2.0/Infusion/R/plot.SLik.R | 43 Infusion-2.2.0/Infusion/R/plot.SLik_j.R | 97 Infusion-2.2.0/Infusion/R/plotProfiles.R | 940 +++- Infusion-2.2.0/Infusion/R/profile.R | 227 - Infusion-2.2.0/Infusion/R/project.R | 354 + Infusion-2.2.0/Infusion/R/quantiles.R | 32 Infusion-2.2.0/Infusion/R/reparam.R |only Infusion-2.2.0/Infusion/R/safe_constrOptim.R | 137 Infusion-2.2.0/Infusion/R/undocumentedFns.R | 87 Infusion-2.2.0/Infusion/inst/NEWS.Rd | 65 Infusion-2.2.0/Infusion/man/Infusion-internal.Rd | 1 Infusion-2.2.0/Infusion/man/Infusion.Rd | 13 Infusion-2.2.0/Infusion/man/MAF.options.Rd |only Infusion-2.2.0/Infusion/man/MSL.Rd | 28 Infusion-2.2.0/Infusion/man/SLRT.Rd |only Infusion-2.2.0/Infusion/man/add.reftable.Rd | 11 Infusion-2.2.0/Infusion/man/add.simulation.Rd | 4 Infusion-2.2.0/Infusion/man/confint.SLik.Rd | 82 Infusion-2.2.0/Infusion/man/constr_crits.Rd |only Infusion-2.2.0/Infusion/man/densv.Rd | 2 Infusion-2.2.0/Infusion/man/example_raw.Rd | 4 Infusion-2.2.0/Infusion/man/example_raw_proj.Rd | 11 Infusion-2.2.0/Infusion/man/example_reftable.Rd | 38 Infusion-2.2.0/Infusion/man/get_from.Rd | 37 Infusion-2.2.0/Infusion/man/get_nbCluster_range.Rd | 3 Infusion-2.2.0/Infusion/man/get_workflow_design.Rd |only Infusion-2.2.0/Infusion/man/goftest.Rd | 22 Infusion-2.2.0/Infusion/man/handling_NAs.Rd | 3 Infusion-2.2.0/Infusion/man/infer_SLik_joint.Rd |only Infusion-2.2.0/Infusion/man/infer_logLs.Rd | 6 Infusion-2.2.0/Infusion/man/infer_surface.Rd | 6 Infusion-2.2.0/Infusion/man/init_grid.Rd | 39 Infusion-2.2.0/Infusion/man/latent.Rd |only Infusion-2.2.0/Infusion/man/options.Rd | 13 Infusion-2.2.0/Infusion/man/plot.SLik.Rd | 14 Infusion-2.2.0/Infusion/man/plot1Dprof.Rd | 113 Infusion-2.2.0/Infusion/man/plot_proj.Rd |only Infusion-2.2.0/Infusion/man/predict.SLik_j.Rd | 19 Infusion-2.2.0/Infusion/man/profile.SLik.Rd | 26 Infusion-2.2.0/Infusion/man/project.Rd | 46 Infusion-2.2.0/Infusion/man/refine.SLik.Rd | 188 Infusion-2.2.0/Infusion/man/reparam.Rd |only Infusion-2.2.0/Infusion/man/sample_volume.Rd | 2 Infusion-2.2.0/Infusion/man/save_MAFs.Rd |only Infusion-2.2.0/Infusion/man/simulate.SLik_j.Rd |only Infusion-2.2.0/Infusion/man/summLik.Rd | 38 Infusion-2.2.0/Infusion/man/update_obs.Rd |only Infusion-2.2.0/Infusion/tests/test-all.R | 48 Infusion-2.2.0/Infusion/tests/testthat/test-3par.R | 8 Infusion-2.2.0/Infusion/tests/testthat/test-Infusion.R | 4 Infusion-2.2.0/Infusion/tests/testthat/test-latint.R |only Infusion-2.2.0/Infusion/tests/testthat/test-localmax.R | 31 Infusion-2.2.0/Infusion/tests/testthat/test-parallelisation.R | 12 Infusion-2.2.0/Infusion/tests/testthat/test-reftable.R | 88 Infusion-2.2.0/Infusion/tests/testthat/test-reftable_3par.R | 13 Infusion-2.2.0/Infusion/tests/testthat/test-reparam.R |only 86 files changed, 6419 insertions(+), 2149 deletions(-)
Title: Infinite-Jackknife-Based Standard Errors for 'brms' Models
Description: Provides a function to calculate infinite-jackknife-based
standard errors for fixed effects parameters in 'brms' models, handling
both clustered and independent data.
References: Ji et al. (2024) <doi:10.48550/arXiv.2407.09772>; Giordano et al. (2024) <doi:10.48550/arXiv.2305.06466>.
Author: Feng Ji [aut, cre] ,
JoonHo Lee [aut],
Sophia Rabe-Hesketh [aut]
Maintainer: Feng Ji <f.ji@utoronto.ca>
Diff between IJSE versions 0.1.0 dated 2024-09-25 and 0.1.1 dated 2024-09-26
DESCRIPTION | 20 ++++++++----- MD5 | 7 ++-- NEWS.md |only R/IJSE.R | 88 +++++++++++++++++++++++++++++++++++++++++++++++++---------- man/IJ_se.Rd | 85 ++++++++++++++++++++++++++++++++++++++++++++++++-------- 5 files changed, 164 insertions(+), 36 deletions(-)
Title: Tidy Flowchart Generator
Description: Creates participant flow diagrams directly from a dataframe. Representing the flow of participants through each stage of a study, especially in clinical trials, is essential to assess the generalisability and validity of the results. This package provides a set of functions that can be combined with a pipe operator to create all kinds of flowcharts from a data frame in an easy way.
Author: Pau Satorra [aut, cre] ,
Joao Carmezim [aut] ,
Natalia Pallares [aut] ,
Cristian Tebe [aut]
Maintainer: Pau Satorra <psatorra@igtp.cat>
Diff between flowchart versions 0.4.0 dated 2024-05-29 and 0.5.0 dated 2024-09-26
DESCRIPTION | 34 +- LICENSE | 4 MD5 | 58 ++--- NAMESPACE | 25 +- NEWS.md | 26 ++ R/as_fc.R | 20 + R/fc_draw.R | 28 +- R/fc_export.R | 10 R/fc_filter.R | 113 +++++++-- R/fc_split.R | 146 +++++++++++- R/fc_view.R |only README.md | 6 build/vignette.rds |binary inst/doc/flowchart.R | 67 ++++- inst/doc/flowchart.Rmd | 209 ++++++++++++++++-- inst/doc/flowchart.html | 555 ++++++++++++++++++++++++++++++++++++------------ man/as_fc.Rd | 113 +++++---- man/fc_draw.Rd | 103 +++++--- man/fc_export.Rd | 110 ++++----- man/fc_filter.Rd | 196 +++++++++------- man/fc_merge.Rd | 68 ++--- man/fc_modify.Rd | 84 +++---- man/fc_split.Rd | 171 +++++++++----- man/fc_stack.Rd | 72 +++--- man/fc_view.Rd |only man/is_class.Rd | 34 +- man/safo.Rd | 84 +++---- man/update_x.Rd | 38 +-- man/update_y.Rd | 38 +-- man/update_y_stack.Rd | 46 +-- vignettes/flowchart.Rmd | 209 ++++++++++++++++-- 31 files changed, 1863 insertions(+), 804 deletions(-)
Title: Computer Experiment Designs
Description: In computer experiments space-filling designs are having great impact. Most popularly used space-filling designs are Uniform designs (UDs), Latin hypercube designs (LHDs) etc. For further references one can see Mckay (1979) <DOI:10.1080/00401706.1979.10489755> and Fang (1980) <https://cir.nii.ac.jp/crid/1570291225616774784>. In this package, we have provided algorithms for generate efficient LHDs and UDs. Here, generated LHDs are efficient as they possess lower value of Maxpro measure, Phi_p value and Maximum Absolute Correlation (MAC) value based on the weightage given to each criterion. On the other hand, the produced UDs are having good space-filling property as they always attain the lower bound of Discrete Discrepancy measure. Further, some useful functions added in this package for adding more value to this package.
Author: Ashutosh Dalal [aut, cre],
Cini Varghese [aut, ctb],
Rajender Parsad [aut, ctb],
Mohd Harun [aut, ctb]
Maintainer: Ashutosh Dalal <ashutosh.dalal97@gmail.com>
Diff between CompExpDes versions 1.0.3 dated 2024-09-03 and 1.0.4 dated 2024-09-26
CompExpDes-1.0.3/CompExpDes/R/max_coincidence_number.R |only CompExpDes-1.0.3/CompExpDes/man/max_coincidence_number.Rd |only CompExpDes-1.0.4/CompExpDes/DESCRIPTION | 8 ++--- CompExpDes-1.0.4/CompExpDes/MD5 | 22 +++++++------- CompExpDes-1.0.4/CompExpDes/NAMESPACE | 4 +- CompExpDes-1.0.4/CompExpDes/R/MAC.R | 8 ++--- CompExpDes-1.0.4/CompExpDes/R/Meeting_Number.R |only CompExpDes-1.0.4/CompExpDes/R/UDesigns_I.R | 4 +- CompExpDes-1.0.4/CompExpDes/R/UDesigns_II.R | 5 +-- CompExpDes-1.0.4/CompExpDes/man/LHDs_II.Rd | 4 +- CompExpDes-1.0.4/CompExpDes/man/Maxpro_Measure.Rd | 2 - CompExpDes-1.0.4/CompExpDes/man/Meeting_Number.Rd |only CompExpDes-1.0.4/CompExpDes/man/PhipMeasure.Rd | 2 - CompExpDes-1.0.4/CompExpDes/man/UDesigns_II.Rd | 6 +-- 14 files changed, 34 insertions(+), 31 deletions(-)
Title: Convert Statistical Objects into Tidy Tibbles
Description: Summarizes key information about statistical
objects in tidy tibbles. This makes it easy to report results, create
plots and consistently work with large numbers of models at once.
Broom provides three verbs that each provide different types of
information about a model. tidy() summarizes information about model
components such as coefficients of a regression. glance() reports
information about an entire model, such as goodness of fit measures
like AIC and BIC. augment() adds information about individual
observations to a dataset, such as fitted values or influence
measures.
Author: David Robinson [aut],
Alex Hayes [aut] ,
Simon Couch [aut, cre] ,
Posit Software, PBC [cph, fnd],
Indrajeet Patil [ctb] ,
Derek Chiu [ctb],
Matthieu Gomez [ctb],
Boris Demeshev [ctb],
Dieter Menne [ctb],
Benjamin Nutter [ctb],
Luke Johnston [ctb],
Be [...truncated...]
Maintainer: Simon Couch <simon.couch@posit.co>
Diff between broom versions 1.0.6 dated 2024-05-17 and 1.0.7 dated 2024-09-26
DESCRIPTION | 35 +++++----- MD5 | 134 ++++++++++++++++++++-------------------- NAMESPACE | 25 +++++++ NEWS.md | 27 +++++++- R/aaa-documentation-helper.R | 17 ----- R/boot-tidiers.R | 3 R/broom-package.R | 2 R/margins-tidiers.R | 127 ++++++++++++++++--------------------- R/mass-negbin-tidiers.R | 3 R/mass-rlm-tidiers.R | 1 R/multcomp-tidiers.R | 3 R/nobs.R | 33 ++++++--- R/stats-anova-tidiers.R | 2 R/stats-lm-tidiers.R | 2 R/survival-survfit-tidiers.R | 5 - R/utilities.R | 9 +- R/vars-tidiers.R | 3 build/vignette.rds |binary inst/doc/adding-tidiers.html | 4 - inst/doc/available-methods.html | 4 - inst/doc/bootstrapping.html | 4 - inst/doc/broom.html | 4 - inst/doc/broom_and_dplyr.html | 4 - man/augment.clm.Rd | 4 - man/augment.glm.Rd | 2 man/augment.lm.Rd | 2 man/augment.nlrq.Rd | 6 - man/augment.polr.Rd | 4 - man/augment.rq.Rd | 4 - man/augment.rqs.Rd | 4 - man/augment_columns.Rd | 3 man/broom.Rd | 4 - man/glance.anova.Rd | 2 man/glance.aov.Rd | 2 man/glance.clm.Rd | 2 man/glance.clmm.Rd | 2 man/glance.glm.Rd | 2 man/glance.lm.Rd | 2 man/glance.margins.Rd | 56 ++++++++++++++++ man/glance.nlrq.Rd | 6 - man/glance.polr.Rd | 4 - man/glance.rq.Rd | 6 - man/glance.summary.lm.Rd | 2 man/glance.survfit.Rd | 2 man/glance.svyglm.Rd | 2 man/glance.svyolr.Rd | 4 - man/tidy.TukeyHSD.Rd | 2 man/tidy.anova.Rd | 2 man/tidy.clm.Rd | 2 man/tidy.clmm.Rd | 2 man/tidy.glht.Rd | 14 ---- man/tidy.glm.Rd | 2 man/tidy.manova.Rd | 4 - man/tidy.margins.Rd | 58 ++++++++++++++++- man/tidy.mlm.Rd | 2 man/tidy.negbin.Rd | 14 ---- man/tidy.nlrq.Rd | 6 - man/tidy.polr.Rd | 4 - man/tidy.rq.Rd | 2 man/tidy.rqs.Rd | 2 man/tidy.summary.lm.Rd | 2 man/tidy.survfit.Rd | 14 ---- man/tidy.svyolr.Rd | 4 - man/tidy.varest.Rd | 14 ---- tests/testthat/test-boot.R | 29 ++++++++ tests/testthat/test-lavaan.R | 3 tests/testthat/test-margins.R | 5 - tests/testthat/test-stats-lm.R | 12 +++ 68 files changed, 461 insertions(+), 316 deletions(-)
Title: Fitting Combined Action with the BRAID Response Surface Model
Description: Contains functions for evaluating, analyzing, and fitting combined
action dose response surfaces with the Bivariate Response to Additive
Interacting Doses (BRAID) model of combined action, along with tools for
implementing other combination analysis methods, including Bliss independence,
combination index, and additional response surface methods.
Author: Anang Shelat [aut],
Nathaniel R. Twarog [aut, cre]
Maintainer: Nathaniel R. Twarog <nathaniel.twarog@stjude.org>
Diff between braidrm versions 0.71 dated 2016-03-07 and 1.0.3 dated 2024-09-26
braidrm-0.71/braidrm/R/braidanalysis.R |only braidrm-0.71/braidrm/R/hilldrm.R |only braidrm-0.71/braidrm/data/es8olatmz.rda |only braidrm-0.71/braidrm/data/ewings.rda |only braidrm-0.71/braidrm/man/braidrm-package.Rd |only braidrm-0.71/braidrm/man/calcBRAIDconfint.Rd |only braidrm-0.71/braidrm/man/es1data.Rd |only braidrm-0.71/braidrm/man/es1plates.Rd |only braidrm-0.71/braidrm/man/es8olatmz.Rd |only braidrm-0.71/braidrm/man/evalBRAIDrsm.Rd |only braidrm-0.71/braidrm/man/evalHillEqn.Rd |only braidrm-0.71/braidrm/man/findBestBRAID.Rd |only braidrm-0.71/braidrm/man/findBestHill.Rd |only braidrm-0.71/braidrm/man/getBRAIDbootstrap.Rd |only braidrm-0.71/braidrm/man/getHillBootstrap.Rd |only braidrm-0.71/braidrm/man/hillConcCorrect.Rd |only braidrm-0.71/braidrm/man/invertBRAIDrsm.Rd |only braidrm-0.71/braidrm/man/runBRAIDanalysis.Rd |only braidrm-1.0.3/braidrm/DESCRIPTION | 33 braidrm-1.0.3/braidrm/MD5 | 98 - braidrm-1.0.3/braidrm/NAMESPACE | 72 braidrm-1.0.3/braidrm/R/bestBraidModel.R |only braidrm-1.0.3/braidrm/R/bootBraidModel.R |only braidrm-1.0.3/braidrm/R/boundedOpt.R |only braidrm-1.0.3/braidrm/R/braidModel.R |only braidrm-1.0.3/braidrm/R/braidScenarios.R |only braidrm-1.0.3/braidrm/R/braidrm.R | 1241 ++++++++-------- braidrm-1.0.3/braidrm/R/combinationIndex.R |only braidrm-1.0.3/braidrm/R/data.R |only braidrm-1.0.3/braidrm/R/estimateIAE.R |only braidrm-1.0.3/braidrm/R/flippedBraid.R |only braidrm-1.0.3/braidrm/R/kappaPrior.R |only braidrm-1.0.3/braidrm/R/musycModel.R |only braidrm-1.0.3/braidrm/R/ursaModel.R |only braidrm-1.0.3/braidrm/R/volumeMetrics.R |only braidrm-1.0.3/braidrm/README.md |only braidrm-1.0.3/braidrm/build |only braidrm-1.0.3/braidrm/data/additiveExample.rda |only braidrm-1.0.3/braidrm/data/antagonisticExample.rda |only braidrm-1.0.3/braidrm/data/coactiveExample.rda |only braidrm-1.0.3/braidrm/data/incompleteExample.rda |only braidrm-1.0.3/braidrm/data/oppositionalExample.rda |only braidrm-1.0.3/braidrm/data/protectiveExample.rda |only braidrm-1.0.3/braidrm/data/synergisticExample.rda |only braidrm-1.0.3/braidrm/inst |only braidrm-1.0.3/braidrm/man/additiveExample.Rd |only braidrm-1.0.3/braidrm/man/antagonisticExample.Rd |only braidrm-1.0.3/braidrm/man/braidrm.Rd | 430 +++-- braidrm-1.0.3/braidrm/man/calcBraidBootstrap.Rd |only braidrm-1.0.3/braidrm/man/calcBraidConfInt.Rd |only braidrm-1.0.3/braidrm/man/coactiveExample.Rd |only braidrm-1.0.3/braidrm/man/deviationSurface.Rd |only braidrm-1.0.3/braidrm/man/estimateCombinationIndices.Rd |only braidrm-1.0.3/braidrm/man/estimateIAE.Rd |only braidrm-1.0.3/braidrm/man/evalBraidModel.Rd |only braidrm-1.0.3/braidrm/man/evalFlippedBraidModel.Rd |only braidrm-1.0.3/braidrm/man/evalMusycModel.Rd |only braidrm-1.0.3/braidrm/man/evalUrsaModel.Rd |only braidrm-1.0.3/braidrm/man/figures |only braidrm-1.0.3/braidrm/man/findBestBraid.Rd |only braidrm-1.0.3/braidrm/man/fitBraidFlipped.Rd |only braidrm-1.0.3/braidrm/man/fitMusycModel.Rd |only braidrm-1.0.3/braidrm/man/fitUrsaModel.Rd |only braidrm-1.0.3/braidrm/man/incompleteExample.Rd |only braidrm-1.0.3/braidrm/man/invertBraidModel.Rd |only braidrm-1.0.3/braidrm/man/invertFlippedBraidModel.Rd |only braidrm-1.0.3/braidrm/man/kappaPrior.Rd |only braidrm-1.0.3/braidrm/man/oppositionalExample.Rd |only braidrm-1.0.3/braidrm/man/protectiveExample.Rd |only braidrm-1.0.3/braidrm/man/synergisticExample.Rd |only braidrm-1.0.3/braidrm/vignettes |only 71 files changed, 1093 insertions(+), 781 deletions(-)
Title: Get Data from the Swiss Federal Statistical Office
Description: Search and download data from the Swiss Federal Statistical Office (BFS) APIs <https://www.bfs.admin.ch/>.
Author: Felix Luginbuhl [aut, cre, cph]
,
Janosch Brenzel-Weiss [ctb],
Joao Martins [ctb],
Philipp Baumann [ctb]
Maintainer: Felix Luginbuhl <felix.luginbuhl@protonmail.ch>
Diff between BFS versions 0.5.8 dated 2024-02-23 and 0.5.9 dated 2024-09-26
BFS-0.5.8/BFS/man/figures/logo_icon.png |only BFS-0.5.8/BFS/man/figures/logo_icon.svg |only BFS-0.5.8/BFS/tests/testthat/test-bfs_get_catalog.R |only BFS-0.5.9/BFS/DESCRIPTION | 12 BFS-0.5.9/BFS/MD5 | 30 - BFS-0.5.9/BFS/NAMESPACE | 67 ++-- BFS-0.5.9/BFS/NEWS.md | 3 BFS-0.5.9/BFS/R/bfs_get_catalog.R | 2 BFS-0.5.9/BFS/R/bfs_get_catalog_data.R | 201 +++++------- BFS-0.5.9/BFS/R/bfs_get_catalog_tables.R | 203 +++++-------- BFS-0.5.9/BFS/R/globals.R | 3 BFS-0.5.9/BFS/README.md | 157 ++++------ BFS-0.5.9/BFS/man/bfs_get_catalog_data.Rd | 20 - BFS-0.5.9/BFS/man/bfs_get_catalog_tables.Rd | 37 +- BFS-0.5.9/BFS/man/figures/leaflet_g1.png |only BFS-0.5.9/BFS/man/figures/logo.png |binary BFS-0.5.9/BFS/tests/testthat/test-bfs_get_catalog_data.R | 24 + BFS-0.5.9/BFS/tests/testthat/test-bfs_get_catalog_tables.R | 19 - 18 files changed, 356 insertions(+), 422 deletions(-)
Title: Access to the 'DraCor' API
Description: Provide an interface for 'Drama Corpora Project' ('DraCor') API: <https://dracor.org/documentation/api>.
Author: Ivan Pozdniakov [aut, cre]
Maintainer: Ivan Pozdniakov <bucherr@yandex.ru>
Diff between rdracor versions 1.0.3 dated 2024-04-03 and 1.0.4 dated 2024-09-26
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NAMESPACE | 1 + NEWS.md | 8 ++++++++ R/dracor.R | 14 +++++++++++--- R/net.R | 6 +++--- build/partial.rdb |binary tests/testthat/test-net.R | 6 +++--- 8 files changed, 36 insertions(+), 19 deletions(-)
Title: Localization Microscopy Data Analysis
Description: Read, register and compare point sets from single molecule localization microscopy.
Author: Jean-Karim Heriche [cre, aut]
Maintainer: Jean-Karim Heriche <heriche@embl.de>
Diff between LOMAR versions 0.4.0 dated 2023-12-20 and 0.5.0 dated 2024-09-26
DESCRIPTION | 12 - MD5 | 29 ++-- NAMESPACE | 3 NEWS.md | 7 + R/TDA.R | 22 +-- R/alpha_shape.R | 17 +- R/registration.R | 128 ++++++++++++++++++ R/utils.R | 251 +++++++++++++++++++++++++++++++++++-- README.md | 1 man/binning.Rd |only man/circle_hough_transform.Rd | 3 man/coloc_index.Rd |only man/multiple_registration.Rd |only man/scale_alpha_shape.Rd | 4 man/shape_features_3d.Rd | 5 tests/testthat/test-registration.R | 2 tests/testthat/test-utils.R | 8 + 17 files changed, 441 insertions(+), 51 deletions(-)
Title: Transformation Models
Description: Formula-based user-interfaces to specific transformation models
implemented in package 'mlt'. Available models include Cox models, some parametric
survival models (Weibull, etc.), models for ordered categorical variables,
normal and non-normal (Box-Cox type) linear models, and continuous outcome logistic regression
(Lohse et al., 2017, <DOI:10.12688/f1000research.12934.1>). The underlying theory
is described in Hothorn et al. (2018) <DOI:10.1111/sjos.12291>. An extension to
transformation models for clustered data is provided (Barbanti and Hothorn, 2022,
<DOI:10.1093/biostatistics/kxac048>). Multivariate conditional transformation models
(Klein et al, 2022, <DOI:10.1111/sjos.12501>) and shift-scale transformation models (Siegfried et al, 2023,
<DOI:10.1080/00031305.2023.2203177>) can be fitted as well.
Author: Torsten Hothorn [aut, cre] ,
Luisa Barbanti [aut] ,
Sandra Siegfried [aut] ,
Brian Ripley [ctb],
Bill Venables [ctb],
Douglas M. Bates [ctb],
Nadja Klein [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between tram versions 1.0-6 dated 2024-09-18 and 1.1-0 dated 2024-09-26
tram-1.0-6/tram/tests/mmlt_ll_sc.R |only tram-1.1-0/tram/DESCRIPTION | 10 tram-1.1-0/tram/MD5 | 36 - tram-1.1-0/tram/NAMESPACE | 12 tram-1.1-0/tram/R/Compris.R | 193 ----- tram-1.1-0/tram/R/mmlt.R | 1096 +------------------------------- tram-1.1-0/tram/R/models.R | 10 tram-1.1-0/tram/R/mtram.R | 11 tram-1.1-0/tram/demo/hcc.R | 4 tram-1.1-0/tram/demo/npn.R | 17 tram-1.1-0/tram/demo/undernutrition.R | 10 tram-1.1-0/tram/inst/NEWS.Rd | 12 tram-1.1-0/tram/inst/doc/mtram.pdf |binary tram-1.1-0/tram/inst/doc/tram.pdf |binary tram-1.1-0/tram/man/Compris.Rd | 59 + tram-1.1-0/tram/man/mmlt.Rd | 66 - tram-1.1-0/tram/tests/bugfixes.R | 31 tram-1.1-0/tram/tests/mmlt-Ex.R | 151 +++- tram-1.1-0/tram/tests/mmlt-Ex.Rout.save | 323 +++++---- tram-1.1-0/tram/tests/mmlt-interface.R |only 20 files changed, 551 insertions(+), 1490 deletions(-)
Title: Insert 'gt' Tables into Word Documents
Description: Insert tables created by the 'gt' R package into 'Microsoft Word'
documents. This gives users the ability to add to their existing word documents
the tables made in 'gt' using the familiar 'officer' package and syntax from
the 'officeverse'.
Author: Ellis Hughes [aut, cre] ,
GlaxoSmithKline Research & Development Limited [cph, fnd]
Maintainer: Ellis Hughes <ellis.h.hughes@gsk.com>
Diff between gto versions 0.1.1 dated 2023-04-03 and 0.1.2 dated 2024-09-26
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/word.R | 3 ++- tests/testthat/test-word.R | 12 ++++++++---- 5 files changed, 21 insertions(+), 12 deletions(-)
Title: Evolutionary Algorithm
Description: Runs a genetic algorithm using the 'AlphaSimR' machinery <doi:10.1093/g3journal/jkaa017> and the coalescent simulator 'MaCS' <doi:10.1101/gr.083634.108>.
Author: Giovanny Covarrubias-Pazaran [aut, cre]
Maintainer: Giovanny Covarrubias-Pazaran <cova_ruber@live.com.mx>
Diff between evola versions 1.0.1 dated 2024-08-28 and 1.0.2 dated 2024-09-26
ChangeLog | 17 + DESCRIPTION | 8 MD5 | 44 +-- NAMESPACE | 5 R/evolafit.R | 222 ++++++++++------- R/utlis.R | 124 +++++++++ build/vignette.rds |binary data/DT_cpdata.RData |binary data/DT_technow.RData |binary data/DT_wheat.RData |binary inst/doc/evola.intro.R | 154 ++++++++++-- inst/doc/evola.intro.Rmd | 219 +++++++++++++---- inst/doc/evola.intro.pdf |binary man/DT_cpdata.Rd | 11 man/DT_technow.Rd | 8 man/DT_wheat.Rd | 10 man/Jc.Rd |only man/Jr.Rd |only man/bestSol.Rd | 5 man/evola-package.Rd | 6 man/evolafit.Rd | 79 ++++-- man/overlay.Rd |only man/stan.Rd |only vignettes/evola.intro.Rmd | 219 +++++++++++++---- vignettes/evola.intro.html | 566 +++++++++++++++++++++++++++++---------------- 25 files changed, 1227 insertions(+), 470 deletions(-)
Title: Fast and Vectorized Base 64 Engine
Description: Provides a fast, lightweight, and vectorized base 64 engine
to encode and decode character and raw vectors as well as files stored
on disk. Common base 64 alphabets are supported out of the box
including the standard, URL-safe, bcrypt, crypt, 'BinHex', and
IMAP-modified UTF-7 alphabets. Custom engines can be created to
support unique base 64 encoding and decoding needs.
Author: Josiah Parry [aut, cre] ,
Etienne Bacher [ctb]
Maintainer: Josiah Parry <josiah.parry@gmail.com>
Diff between b64 versions 0.1.2 dated 2024-07-31 and 0.1.3 dated 2024-09-26
DESCRIPTION | 6 +++--- MD5 | 17 +++++++++-------- configure | 21 ++------------------- configure.win | 17 ++--------------- src/Makevars.win | 7 ------- src/rust/Cargo.lock | 25 +++++++++++++------------ src/rust/Cargo.toml | 4 +--- src/rust/vendor-config.toml | 5 ----- src/rust/vendor.tar.xz |binary tools |only 10 files changed, 30 insertions(+), 72 deletions(-)
Title: Archetypes for Targets
Description: Function-oriented Make-like declarative pipelines for
Statistics and data science are supported in the 'targets' R package.
As an extension to 'targets', the 'tarchetypes' package provides
convenient user-side functions to make 'targets' easier to use.
By establishing reusable archetypes for common kinds of
targets and pipelines, these functions help express complicated
reproducible pipelines concisely and compactly.
The methods in this package were influenced by the 'drake' R package
by Will Landau (2018) <doi:10.21105/joss.00550>.
Author: William Michael Landau [aut, cre]
,
Samantha Oliver [rev] ,
Tristan Mahr [rev] ,
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between tarchetypes versions 0.9.0 dated 2024-04-17 and 0.10.0 dated 2024-09-26
tarchetypes-0.10.0/tarchetypes/DESCRIPTION | 12 tarchetypes-0.10.0/tarchetypes/MD5 | 199 +++--- tarchetypes-0.10.0/tarchetypes/NAMESPACE | 14 tarchetypes-0.10.0/tarchetypes/NEWS.md | 9 tarchetypes-0.10.0/tarchetypes/R/tar_assign.R |only tarchetypes-0.10.0/tarchetypes/R/tar_combine.R | 37 + tarchetypes-0.10.0/tarchetypes/R/tar_combine_raw.R | 31 - tarchetypes-0.10.0/tarchetypes/R/tar_cue_age.R | 22 tarchetypes-0.10.0/tarchetypes/R/tar_cue_age_raw.R | 50 - tarchetypes-0.10.0/tarchetypes/R/tar_eval.R | 12 tarchetypes-0.10.0/tarchetypes/R/tar_eval_raw.R | 43 - tarchetypes-0.10.0/tarchetypes/R/tar_files.R | 36 + tarchetypes-0.10.0/tarchetypes/R/tar_files_input.R | 42 + tarchetypes-0.10.0/tarchetypes/R/tar_files_input_raw.R | 63 -- tarchetypes-0.10.0/tarchetypes/R/tar_files_raw.R | 52 - tarchetypes-0.10.0/tarchetypes/R/tar_format_nanoparquet.R |only tarchetypes-0.10.0/tarchetypes/R/tar_formats.R | 147 ++++- tarchetypes-0.10.0/tarchetypes/R/tar_hook_before.R | 81 +- tarchetypes-0.10.0/tarchetypes/R/tar_hook_before_raw.R |only tarchetypes-0.10.0/tarchetypes/R/tar_hook_inner.R | 80 +- tarchetypes-0.10.0/tarchetypes/R/tar_hook_inner_raw.R |only tarchetypes-0.10.0/tarchetypes/R/tar_hook_outer.R | 61 +- tarchetypes-0.10.0/tarchetypes/R/tar_hook_outer_raw.R |only tarchetypes-0.10.0/tarchetypes/R/tar_knit.R | 27 tarchetypes-0.10.0/tarchetypes/R/tar_knit_raw.R | 56 - tarchetypes-0.10.0/tarchetypes/R/tar_map.R | 25 tarchetypes-0.10.0/tarchetypes/R/tar_map2.R | 56 + tarchetypes-0.10.0/tarchetypes/R/tar_map2_count.R | 34 + tarchetypes-0.10.0/tarchetypes/R/tar_map2_count_raw.R | 58 -- tarchetypes-0.10.0/tarchetypes/R/tar_map2_raw.R | 49 - tarchetypes-0.10.0/tarchetypes/R/tar_map2_size.R | 34 + tarchetypes-0.10.0/tarchetypes/R/tar_map2_size_raw.R | 56 - tarchetypes-0.10.0/tarchetypes/R/tar_map_rep.R | 46 + tarchetypes-0.10.0/tarchetypes/R/tar_map_rep_raw.R | 76 -- tarchetypes-0.10.0/tarchetypes/R/tar_package.R | 6 tarchetypes-0.10.0/tarchetypes/R/tar_plan.R | 6 tarchetypes-0.10.0/tarchetypes/R/tar_quarto.R | 40 + tarchetypes-0.10.0/tarchetypes/R/tar_quarto_raw.R | 108 --- tarchetypes-0.10.0/tarchetypes/R/tar_quarto_rep.R | 29 - tarchetypes-0.10.0/tarchetypes/R/tar_quarto_rep_raw.R | 109 --- tarchetypes-0.10.0/tarchetypes/R/tar_render.R | 37 + tarchetypes-0.10.0/tarchetypes/R/tar_render_raw.R | 83 -- tarchetypes-0.10.0/tarchetypes/R/tar_render_rep.R | 23 tarchetypes-0.10.0/tarchetypes/R/tar_render_rep_raw.R | 101 --- tarchetypes-0.10.0/tarchetypes/R/tar_rep.R | 38 + tarchetypes-0.10.0/tarchetypes/R/tar_rep2.R | 49 + tarchetypes-0.10.0/tarchetypes/R/tar_rep2_raw.R | 52 - tarchetypes-0.10.0/tarchetypes/R/tar_rep_raw.R | 57 - tarchetypes-0.10.0/tarchetypes/R/tar_sub.R | 12 tarchetypes-0.10.0/tarchetypes/R/tar_sub_raw.R | 25 tarchetypes-0.10.0/tarchetypes/inst/WORDLIST | 4 tarchetypes-0.10.0/tarchetypes/man/tar_age.Rd | 34 - tarchetypes-0.10.0/tarchetypes/man/tar_assign.Rd |only tarchetypes-0.10.0/tarchetypes/man/tar_change.Rd | 35 + tarchetypes-0.10.0/tarchetypes/man/tar_combine.Rd | 114 ++- tarchetypes-0.10.0/tarchetypes/man/tar_cue_age.Rd | 36 + tarchetypes-0.10.0/tarchetypes/man/tar_cue_force.Rd | 1 tarchetypes-0.10.0/tarchetypes/man/tar_cue_skip.Rd | 1 tarchetypes-0.10.0/tarchetypes/man/tar_download.Rd | 27 tarchetypes-0.10.0/tarchetypes/man/tar_eval.Rd | 20 tarchetypes-0.10.0/tarchetypes/man/tar_file_read.Rd | 29 - tarchetypes-0.10.0/tarchetypes/man/tar_files.Rd | 94 ++- tarchetypes-0.10.0/tarchetypes/man/tar_files_input.Rd | 82 +- tarchetypes-0.10.0/tarchetypes/man/tar_force.Rd | 35 + tarchetypes-0.10.0/tarchetypes/man/tar_format_nanoparquet.Rd |only tarchetypes-0.10.0/tarchetypes/man/tar_formats.Rd | 290 ++-------- tarchetypes-0.10.0/tarchetypes/man/tar_formats_superseded.Rd |only tarchetypes-0.10.0/tarchetypes/man/tar_group_by.Rd | 35 + tarchetypes-0.10.0/tarchetypes/man/tar_group_count.Rd | 35 + tarchetypes-0.10.0/tarchetypes/man/tar_group_select.Rd | 35 + tarchetypes-0.10.0/tarchetypes/man/tar_group_size.Rd | 35 + tarchetypes-0.10.0/tarchetypes/man/tar_hook_before.Rd | 59 +- tarchetypes-0.10.0/tarchetypes/man/tar_hook_inner.Rd | 61 +- tarchetypes-0.10.0/tarchetypes/man/tar_hook_outer.Rd | 58 +- tarchetypes-0.10.0/tarchetypes/man/tar_knit.Rd | 91 ++- tarchetypes-0.10.0/tarchetypes/man/tar_map.Rd | 27 tarchetypes-0.10.0/tarchetypes/man/tar_map2.Rd | 133 +++- tarchetypes-0.10.0/tarchetypes/man/tar_map2_count.Rd | 163 ++++- tarchetypes-0.10.0/tarchetypes/man/tar_map2_size.Rd | 157 ++++- tarchetypes-0.10.0/tarchetypes/man/tar_map_rep.Rd | 132 +++- tarchetypes-0.10.0/tarchetypes/man/tar_nanoparquet_convert.Rd |only tarchetypes-0.10.0/tarchetypes/man/tar_nanoparquet_read.Rd |only tarchetypes-0.10.0/tarchetypes/man/tar_nanoparquet_write.Rd |only tarchetypes-0.10.0/tarchetypes/man/tar_plan.Rd | 4 tarchetypes-0.10.0/tarchetypes/man/tar_quarto.Rd | 130 ++-- tarchetypes-0.10.0/tarchetypes/man/tar_quarto_rep.Rd | 132 +++- tarchetypes-0.10.0/tarchetypes/man/tar_render.Rd | 97 ++- tarchetypes-0.10.0/tarchetypes/man/tar_render_rep.Rd | 95 ++- tarchetypes-0.10.0/tarchetypes/man/tar_rep.Rd | 113 ++- tarchetypes-0.10.0/tarchetypes/man/tar_rep2.Rd | 125 +++- tarchetypes-0.10.0/tarchetypes/man/tar_rep_map.Rd | 46 + tarchetypes-0.10.0/tarchetypes/man/tar_rep_map_raw.Rd | 46 + tarchetypes-0.10.0/tarchetypes/man/tar_rep_run.Rd | 2 tarchetypes-0.10.0/tarchetypes/man/tar_skip.Rd | 35 + tarchetypes-0.10.0/tarchetypes/man/tar_sub.Rd | 20 tarchetypes-0.10.0/tarchetypes/tests/testthat/test-tar_assign.R |only tarchetypes-0.10.0/tarchetypes/tests/testthat/test-tar_format_nanoparquet.R |only tarchetypes-0.10.0/tarchetypes/tests/testthat/test-tar_formats.R | 9 tarchetypes-0.10.0/tarchetypes/tests/testthat/test-tar_nanoparquet.R |only tarchetypes-0.9.0/tarchetypes/man/tar_combine_raw.Rd |only tarchetypes-0.9.0/tarchetypes/man/tar_cue_age_raw.Rd |only tarchetypes-0.9.0/tarchetypes/man/tar_eval_raw.Rd |only tarchetypes-0.9.0/tarchetypes/man/tar_files_input_raw.Rd |only tarchetypes-0.9.0/tarchetypes/man/tar_files_raw.Rd |only tarchetypes-0.9.0/tarchetypes/man/tar_knit_raw.Rd |only tarchetypes-0.9.0/tarchetypes/man/tar_map2_count_raw.Rd |only tarchetypes-0.9.0/tarchetypes/man/tar_map2_raw.Rd |only tarchetypes-0.9.0/tarchetypes/man/tar_map2_size_raw.Rd |only tarchetypes-0.9.0/tarchetypes/man/tar_map_rep_raw.Rd |only tarchetypes-0.9.0/tarchetypes/man/tar_quarto_raw.Rd |only tarchetypes-0.9.0/tarchetypes/man/tar_quarto_rep_raw.Rd |only tarchetypes-0.9.0/tarchetypes/man/tar_render_raw.Rd |only tarchetypes-0.9.0/tarchetypes/man/tar_render_rep_raw.Rd |only tarchetypes-0.9.0/tarchetypes/man/tar_rep2_raw.Rd |only tarchetypes-0.9.0/tarchetypes/man/tar_rep_raw.Rd |only tarchetypes-0.9.0/tarchetypes/man/tar_sub_raw.Rd |only 116 files changed, 2761 insertions(+), 2199 deletions(-)
Title: Endogenous Switching and Sample Selection Regression Models
Description: Estimate the parameters of multivariate endogenous switching and sample selection models using methods described in Newey (2009) <doi:10.1111/j.1368-423X.2008.00263.x>, E. Kossova, B. Potanin (2018) <https://ideas.repec.org/a/ris/apltrx/0346.html>, E. Kossova, L. Kupriianova, B. Potanin (2020) <https://ideas.repec.org/a/ris/apltrx/0391.html> and E. Kossova, B. Potanin (2022) <https://ideas.repec.org/a/ris/apltrx/0455.html>.
Author: Bogdan Potanin [aut, cre, ctb],
Sofiia Dolgikh [ctb]
Maintainer: Bogdan Potanin <bogdanpotanin@gmail.com>
Diff between switchSelection versions 1.1.2 dated 2023-08-23 and 2.0.0 dated 2024-09-26
switchSelection-1.1.2/switchSelection/R/delta.R |only switchSelection-1.1.2/switchSelection/R/mnprobit.R |only switchSelection-1.1.2/switchSelection/R/mvoprobit.R |only switchSelection-1.1.2/switchSelection/man/coef.mnprobit.Rd |only switchSelection-1.1.2/switchSelection/man/coef.mvoprobit.Rd |only switchSelection-1.1.2/switchSelection/man/delta_method.Rd |only switchSelection-1.1.2/switchSelection/man/fitted.mnprobit.Rd |only switchSelection-1.1.2/switchSelection/man/fitted.mvoprobit.Rd |only switchSelection-1.1.2/switchSelection/man/formula.mnprobit.Rd |only switchSelection-1.1.2/switchSelection/man/formula.mvoprobit.Rd |only switchSelection-1.1.2/switchSelection/man/grad_mnprobit.Rd |only switchSelection-1.1.2/switchSelection/man/grad_mvoprobit.Rd |only switchSelection-1.1.2/switchSelection/man/lnL_mnprobit.Rd |only switchSelection-1.1.2/switchSelection/man/lnL_mvoprobit.Rd |only switchSelection-1.1.2/switchSelection/man/logLik.mnprobit.Rd |only switchSelection-1.1.2/switchSelection/man/logLik.mvoprobit.Rd |only switchSelection-1.1.2/switchSelection/man/lrtest.Rd |only switchSelection-1.1.2/switchSelection/man/mnprobit.Rd |only switchSelection-1.1.2/switchSelection/man/mvoprobit.Rd |only switchSelection-1.1.2/switchSelection/man/nobs.mnprobit.Rd |only switchSelection-1.1.2/switchSelection/man/nobs.mvoprobit.Rd |only switchSelection-1.1.2/switchSelection/man/predict.mnprobit.Rd |only switchSelection-1.1.2/switchSelection/man/predict.mvoprobit.Rd |only switchSelection-1.1.2/switchSelection/man/print.lrtest.Rd |only switchSelection-1.1.2/switchSelection/man/print.mnprobit.Rd |only switchSelection-1.1.2/switchSelection/man/print.mvoprobit.Rd |only switchSelection-1.1.2/switchSelection/man/print.summary.delta_method.Rd |only switchSelection-1.1.2/switchSelection/man/print.summary.lrtest.Rd |only switchSelection-1.1.2/switchSelection/man/print.summary.mnprobit.Rd |only switchSelection-1.1.2/switchSelection/man/print.summary.mvoprobit.Rd |only switchSelection-1.1.2/switchSelection/man/sigma.mnprobit.Rd |only switchSelection-1.1.2/switchSelection/man/sigma.mvoprobit.Rd |only switchSelection-1.1.2/switchSelection/man/summary.delta_method.Rd |only switchSelection-1.1.2/switchSelection/man/summary.lrtest.Rd |only switchSelection-1.1.2/switchSelection/man/summary.mnprobit.Rd |only switchSelection-1.1.2/switchSelection/man/summary.mvoprobit.Rd |only switchSelection-1.1.2/switchSelection/man/vcov.mnprobit.Rd |only switchSelection-1.1.2/switchSelection/man/vcov.mvoprobit.Rd |only switchSelection-1.1.2/switchSelection/src/mnprobit.cpp |only switchSelection-1.1.2/switchSelection/src/mnprobit.h |only switchSelection-1.1.2/switchSelection/src/mvoprobit.cpp |only switchSelection-1.1.2/switchSelection/src/mvoprobit.h |only switchSelection-2.0.0/switchSelection/DESCRIPTION | 12 switchSelection-2.0.0/switchSelection/MD5 | 121 switchSelection-2.0.0/switchSelection/NAMESPACE | 66 switchSelection-2.0.0/switchSelection/R/RcppExports.R | 39 switchSelection-2.0.0/switchSelection/R/bootstrap.R |only switchSelection-2.0.0/switchSelection/R/coef.R | 380 -- switchSelection-2.0.0/switchSelection/R/complete.R |only switchSelection-2.0.0/switchSelection/R/cps.R | 42 switchSelection-2.0.0/switchSelection/R/data.R |only switchSelection-2.0.0/switchSelection/R/fitted.R | 145 switchSelection-2.0.0/switchSelection/R/formula.R | 212 - switchSelection-2.0.0/switchSelection/R/groups.R |only switchSelection-2.0.0/switchSelection/R/helpFunctions.R | 48 switchSelection-2.0.0/switchSelection/R/logLik.R | 64 switchSelection-2.0.0/switchSelection/R/lrtest.R | 150 switchSelection-2.0.0/switchSelection/R/msel.R |only switchSelection-2.0.0/switchSelection/R/names.R |only switchSelection-2.0.0/switchSelection/R/opt.R | 39 switchSelection-2.0.0/switchSelection/R/par.R | 334 + switchSelection-2.0.0/switchSelection/R/predict.R | 1699 +++++----- switchSelection-2.0.0/switchSelection/R/regularization.R | 2 switchSelection-2.0.0/switchSelection/R/sigma.R | 43 switchSelection-2.0.0/switchSelection/R/summary.R | 611 +-- switchSelection-2.0.0/switchSelection/R/tbl.R | 442 +- switchSelection-2.0.0/switchSelection/R/test.R |only switchSelection-2.0.0/switchSelection/R/vcov.R | 372 +- switchSelection-2.0.0/switchSelection/data/cps.rda |binary switchSelection-2.0.0/switchSelection/man/bootstrap.Rd |only switchSelection-2.0.0/switchSelection/man/coef.msel.Rd |only switchSelection-2.0.0/switchSelection/man/cps.Rd | 42 switchSelection-2.0.0/switchSelection/man/exogenous_fn.Rd |only switchSelection-2.0.0/switchSelection/man/fitted.msel.Rd |only switchSelection-2.0.0/switchSelection/man/formula.msel.Rd |only switchSelection-2.0.0/switchSelection/man/grad_msel.Rd |only switchSelection-2.0.0/switchSelection/man/lnL_msel.Rd |only switchSelection-2.0.0/switchSelection/man/logLik.msel.Rd |only switchSelection-2.0.0/switchSelection/man/lrtest_msel.Rd |only switchSelection-2.0.0/switchSelection/man/msel.Rd |only switchSelection-2.0.0/switchSelection/man/nobs.msel.Rd |only switchSelection-2.0.0/switchSelection/man/predict.msel.Rd |only switchSelection-2.0.0/switchSelection/man/print.lrtest_msel.Rd |only switchSelection-2.0.0/switchSelection/man/print.msel.Rd |only switchSelection-2.0.0/switchSelection/man/print.struct_msel.Rd |only switchSelection-2.0.0/switchSelection/man/print.summary.lrtest_msel.Rd |only switchSelection-2.0.0/switchSelection/man/print.summary.msel.Rd |only switchSelection-2.0.0/switchSelection/man/print.summary.test_msel.Rd |only switchSelection-2.0.0/switchSelection/man/sigma.msel.Rd |only switchSelection-2.0.0/switchSelection/man/struct_msel.Rd |only switchSelection-2.0.0/switchSelection/man/summary.lrtest_msel.Rd |only switchSelection-2.0.0/switchSelection/man/summary.msel.Rd |only switchSelection-2.0.0/switchSelection/man/summary.test_msel.Rd |only switchSelection-2.0.0/switchSelection/man/test_msel.Rd |only switchSelection-2.0.0/switchSelection/man/update_msel.Rd |only switchSelection-2.0.0/switchSelection/man/vcov.msel.Rd |only switchSelection-2.0.0/switchSelection/src/RcppExports.cpp | 52 switchSelection-2.0.0/switchSelection/src/helpFunctions.cpp | 9 switchSelection-2.0.0/switchSelection/src/msel.cpp |only switchSelection-2.0.0/switchSelection/src/msel.h |only 100 files changed, 2362 insertions(+), 2562 deletions(-)
More information about switchSelection at CRAN
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Title: Latent Variable Analysis
Description: Fit a variety of latent variable models, including confirmatory
factor analysis, structural equation modeling and latent growth curve models.
Author: Yves Rosseel [aut, cre] ,
Terrence D. Jorgensen [aut] ,
Luc De Wilde [aut],
Daniel Oberski [ctb],
Jarrett Byrnes [ctb],
Leonard Vanbrabant [ctb],
Victoria Savalei [ctb],
Ed Merkle [ctb],
Michael Hallquist [ctb],
Mijke Rhemtulla [ctb],
Myrsini Katsika [...truncated...]
Maintainer: Yves Rosseel <Yves.Rosseel@UGent.be>
Diff between lavaan versions 0.6-18 dated 2024-06-07 and 0.6-19 dated 2024-09-26
DESCRIPTION | 9 +-- MD5 | 107 ++++++++++++++++++++--------------------- R/00class.R | 1 R/ctr_estfun.R | 2 R/ctr_pml_utils.R | 2 R/lav_bvord.R | 6 +- R/lav_constraints.R | 23 +++++++- R/lav_data.R | 22 ++++++-- R/lav_data_patterns.R | 56 ++++++++++++--------- R/lav_dataframe.R | 19 +++++-- R/lav_h1.R |only R/lav_h1_implied.R | 27 +++++++--- R/lav_lavaan_step09_model.R | 53 ++++++++++++++++++++ R/lav_lavaan_step16_rotation.R | 5 - R/lav_lavaan_step17_lavaan.R | 4 + R/lav_model.R | 1 R/lav_model_compute.R | 43 ++++++++++++++++ R/lav_model_estimate.R | 102 ++++++++++++++++++++++++++++++++++----- R/lav_model_h1_information.R | 4 - R/lav_model_information.R | 1 R/lav_model_loglik.R | 16 ++++-- R/lav_model_objective.R | 3 + R/lav_model_utils.R | 11 +++- R/lav_muthen1984.R | 3 - R/lav_mvnorm_cluster_missing.R | 4 - R/lav_object_generate.R | 18 ++++++ R/lav_object_inspect.R | 83 ++++++++++++++++++++++++++++++- R/lav_object_methods.R | 19 ++++++- R/lav_object_summary.R | 33 +++++++++++- R/lav_objective.R | 32 ++++++------ R/lav_optim_nlminb_constr.R | 2 R/lav_options.R | 9 ++- R/lav_options_default.R | 7 +- R/lav_partable_constraints.R | 86 +++++++++++++++++++++++--------- R/lav_partable_unrestricted.R | 8 ++- R/lav_predict.R | 88 +++++++++++++++++++++++++++++---- R/lav_sam_step1.R | 39 +++++++++++--- R/lav_sam_utils.R | 4 + R/lav_samplestats.R | 11 ++-- R/lav_samplestats_gamma.R | 3 - R/lav_samplestats_step1.R | 52 ++++++++++++++++++- R/lav_start.R | 1 R/lav_syntax_parser.R | 47 +++++++++++++++++- R/lav_test.R | 8 +-- R/lav_test_LRT.R | 87 ++++++++++++++++++++++----------- R/lav_test_diff.R | 11 +++- R/lav_test_print.R | 4 - R/lav_test_satorra_bentler.R | 3 - R/lav_uvord.R | 22 ++++++-- R/xxx_lavaan.R | 12 ++++ R/xxx_sam.R | 11 ++++ build/partial.rdb |binary man/lavInspect.Rd | 12 ++++ man/lavOptions.Rd | 14 +++++ man/lavPredict.Rd | 5 + 55 files changed, 992 insertions(+), 263 deletions(-)
Title: Co-Data Learning for Bayesian Additive Regression Trees
Description: Estimate prior variable weights for Bayesian Additive Regression
Trees (BART). These weights correspond to the probabilities of the variables
being selected in the splitting rules of the sum-of-trees.
Weights are estimated using empirical Bayes and external information on
the explanatory variables (co-data).
BART models are fitted using the 'dbarts' 'R' package.
See Goedhart and others (2023) <doi:10.48550/arXiv.2311.09997> for details.
Author: Jeroen M. Goedhart [aut, cre, cph]
,
Thomas Klausch [aut],
Mark A. van de Wiel [aut],
Vincent Dorie [ctb] ,
Hanarth Fonds [fnd]
Maintainer: Jeroen M. Goedhart <jeroengoed@gmail.com>
Diff between EBcoBART versions 1.0.2 dated 2024-09-03 and 1.1.0 dated 2024-09-26
EBcoBART-1.0.2/EBcoBART/data/dat.rda |only EBcoBART-1.0.2/EBcoBART/man/dat.Rd |only EBcoBART-1.1.0/EBcoBART/DESCRIPTION | 8 ++-- EBcoBART-1.1.0/EBcoBART/MD5 | 20 +++++----- EBcoBART-1.1.0/EBcoBART/NAMESPACE | 1 EBcoBART-1.1.0/EBcoBART/NEWS.md | 8 ++++ EBcoBART-1.1.0/EBcoBART/R/EBcoBART_Functions.R | 28 +++++++++----- EBcoBART-1.1.0/EBcoBART/R/data.R | 49 ++++++++++++++++++++++--- EBcoBART-1.1.0/EBcoBART/README.md | 40 ++++++++++++++++++-- EBcoBART-1.1.0/EBcoBART/data/Bloodplatelet.rda |only EBcoBART-1.1.0/EBcoBART/data/Lymphoma.rda |only EBcoBART-1.1.0/EBcoBART/man/Bloodplatelet.Rd |only EBcoBART-1.1.0/EBcoBART/man/EBcoBART.Rd | 20 ++++++---- EBcoBART-1.1.0/EBcoBART/man/Lymphoma.Rd |only 14 files changed, 135 insertions(+), 39 deletions(-)
More information about shinyQueryBuilder at CRAN
Permanent link
Title: Analysis of Quaternary Science Data
Description: Constrained clustering, transfer functions, and other methods for analysing Quaternary science data.
Author: Steve Juggins [aut, cre]
Maintainer: Steve Juggins <Stephen.Juggins@ncl.ac.uk>
Diff between rioja versions 1.0-6 dated 2023-10-19 and 1.0-7 dated 2024-09-26
DESCRIPTION | 11 ++++++----- MD5 | 12 ++++++------ build/partial.rdb |binary inst/ChangeLog | 4 ++++ src/chclust.cpp | 14 +++++++------- src/mlrc.cpp | 14 +++++++------- src/wapls.cpp | 32 ++++++++++++++++---------------- 7 files changed, 46 insertions(+), 41 deletions(-)
Title: Perform HTTP Requests and Process the Responses
Description: Tools for creating and modifying HTTP requests, then
performing them and processing the results. 'httr2' is a modern
re-imagining of 'httr' that uses a pipe-based interface and solves
more of the problems that API wrapping packages face.
Author: Hadley Wickham [aut, cre],
Posit Software, PBC [cph, fnd],
Maximilian Girlich [ctb]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between httr2 versions 1.0.4 dated 2024-09-13 and 1.0.5 dated 2024-09-26
DESCRIPTION | 6 +-- MD5 | 16 ++++----- NEWS.md | 4 ++ R/multi-req.R | 2 - inst/doc/httr2.html | 48 +++++++++++++-------------- tests/testthat/test-multi-req.R | 5 ++ tests/testthat/test-req-perform-connection.R | 6 +++ tests/testthat/test-req-perform.R | 10 ++--- tests/testthat/test-req-promise.R | 6 +++ 9 files changed, 62 insertions(+), 41 deletions(-)
Title: Easy Study of Patient DICOM Data in Oncology
Description: Exploitation, processing and 2D-3D visualization of DICOM-RT files (structures, dosimetry, imagery) for medical physics and clinical research, in a patient-oriented perspective.
Author: Cathy Fontbonne [aut, cre] ,
Jean-Marc Fontbonne [aut] ,
Nathan Azemar [ctb]
Maintainer: Cathy Fontbonne <contact.espadon@lpccaen.in2p3.fr>
Diff between espadon versions 1.7.4 dated 2024-08-01 and 1.8.0 dated 2024-09-26
espadon-1.7.4/espadon/R/struct_oversampling.R |only espadon-1.7.4/espadon/build/espadon.pdf |only espadon-1.8.0/espadon/DESCRIPTION | 12 +- espadon-1.8.0/espadon/MD5 | 68 +++++++------ espadon-1.8.0/espadon/NAMESPACE | 7 + espadon-1.8.0/espadon/R/add_shape.R |only espadon-1.8.0/espadon/R/bin_closing.R | 84 ++++------------- espadon-1.8.0/espadon/R/bin_dilation.R | 57 ++++------- espadon-1.8.0/espadon/R/bin_erosion.R | 55 +++-------- espadon-1.8.0/espadon/R/bin_from_roi.R | 17 +-- espadon-1.8.0/espadon/R/bin_opening.R | 78 ++++----------- espadon-1.8.0/espadon/R/bin_shape.R |only espadon-1.8.0/espadon/R/dicom_patient_anonymiser.R | 25 +++-- espadon-1.8.0/espadon/R/dicom_raw_data_anonymizer.R | 33 ++++++ espadon-1.8.0/espadon/R/espadon_hidden.R | 26 +++-- espadon-1.8.0/espadon/R/export.R | 4 espadon-1.8.0/espadon/R/get_extreme_pt.R | 1 espadon-1.8.0/espadon/R/nesting_bin.R | 13 +- espadon-1.8.0/espadon/R/nesting_cube.R | 38 +++++++ espadon-1.8.0/espadon/R/struct_from_mesh.R | 28 ++++- espadon-1.8.0/espadon/R/vol_border_tuning.R | 4 espadon-1.8.0/espadon/R/vol_create.R | 20 +++- espadon-1.8.0/espadon/R/vol_oversampling.R | 14 +- espadon-1.8.0/espadon/build/partial.rdb |binary espadon-1.8.0/espadon/build/stage23.rdb |binary espadon-1.8.0/espadon/build/vignette.rds |binary espadon-1.8.0/espadon/inst/doc/espadon_overview.html | 8 - espadon-1.8.0/espadon/man/add.shape.Rd |only espadon-1.8.0/espadon/man/bin.closing.Rd | 8 - espadon-1.8.0/espadon/man/bin.cuboid.Rd |only espadon-1.8.0/espadon/man/bin.dilation.Rd | 8 - espadon-1.8.0/espadon/man/bin.erosion.Rd | 8 - espadon-1.8.0/espadon/man/bin.from.roi.Rd | 6 - espadon-1.8.0/espadon/man/bin.opening.Rd | 4 espadon-1.8.0/espadon/man/dicom.patient.anonymiser.Rd | 5 - espadon-1.8.0/espadon/man/dicom.raw.data.anonymizer.Rd | 4 espadon-1.8.0/espadon/man/get.extreme.pt.Rd | 1 espadon-1.8.0/espadon/man/vol.create.Rd | 4 38 files changed, 317 insertions(+), 323 deletions(-)
Title: Analysis of Diffusion Weighted Imaging (DWI) Data
Description: Diffusion Weighted Imaging (DWI) is a Magnetic Resonance Imaging
modality, that measures diffusion of water in tissues like the human
brain. The package contains R-functions to process diffusion-weighted
data. The functionality includes diffusion tensor imaging (DTI),
diffusion kurtosis imaging (DKI), modeling for high angular resolution
diffusion weighted imaging (HARDI) using Q-ball-reconstruction and
tensor mixture models, several methods for structural adaptive
smoothing including POAS and msPOAS, and a streamline fiber tracking
for tensor and tensor mixture models.
The package provides functionality to manipulate and visualize results
in 2D and 3D.
Author: Karsten Tabelow [aut, cre],
Joerg Polzehl [aut],
Felix Anker [ctb]
Maintainer: Karsten Tabelow <karsten.tabelow@wias-berlin.de>
Diff between dti versions 1.5.4 dated 2023-09-06 and 1.5.4.3 dated 2024-09-26
DESCRIPTION | 8 +-- MD5 | 15 +++--- README.md |only build/partial.rdb |binary man/extract-methods.Rd | 2 src/TrackingInterface.cpp | 4 - src/bmixtensorpl.c | 60 ++++++++++++------------ src/mixtensorpl.c | 112 +++++++++++++++++++++++----------------------- src/tensorc.c | 28 +++++------ 9 files changed, 115 insertions(+), 114 deletions(-)
Title: Density, Distribution, and Sampling Functions for Evidence
Accumulation Models
Description: Calculate the probability density functions (PDFs) for two threshold evidence
accumulation models (EAMs). These are defined using the following Stochastic
Differential Equation (SDE), dx(t) = v(x(t),t)*dt+D(x(t),t)*dW, where x(t) is
the accumulated evidence at time t, v(x(t),t) is the drift rate, D(x(t),t) is
the noise scale, and W is the standard Wiener process. The boundary conditions
of this process are the upper and lower decision thresholds, represented by b_u(t)
and b_l(t), respectively. Upper threshold b_u(t) > 0, while lower threshold b_l(t) < 0.
The initial condition of this process x(0) = z where b_l(t) < z < b_u(t). We
represent this as the relative start point w = z/(b_u(0)-b_l(0)), defined as
a ratio of the initial threshold location. This package generates the PDF using
the same approach as the 'python' package it is based upon, 'PyBEAM' by Murrow and Holmes
(2023) <doi:10.3758/s13428-023-02162-w>. First, it converts the SDE model into the
forwards Fokke [...truncated...]
Author: Raphael Hartmann [aut, cre] ,
Matthew Murrow [aut]
Maintainer: Raphael Hartmann <raphael.hartmann@protonmail.com>
Diff between ream versions 1.0-4 dated 2024-09-20 and 1.0-5 dated 2024-09-26
DESCRIPTION | 6 +++--- MD5 | 6 +++--- inst/doc/guidline.html | 4 ++-- src/R_wrapper.cpp | 1 + 4 files changed, 9 insertions(+), 8 deletions(-)
Title: Access the 'Quickbase' JSON API
Description: Programmatically access the 'Quickbase' JSON API <https://developer.quickbase.com>.
You supply parameters for an API call, 'qbr' delivers an http request to the
API endpoint and returns its response. Outputs follow 'tidyverse' philosophy.
Author: John Erdmann [aut, cre],
Keene State College [cph, fnd]
Maintainer: John Erdmann <john.erdmann@keene.edu>
Diff between qbr versions 1.2.3 dated 2023-08-23 and 1.2.4 dated 2024-09-26
DESCRIPTION | 9 +- MD5 | 37 ++++---- NAMESPACE | 2 NEWS.md | 8 + R/glob_vars.R | 4 R/qb_apps.R | 48 +++-------- R/qb_extras.R | 11 -- R/qb_fields.R | 11 -- R/qb_records.R | 210 ++++++++++++++++++++++++++++++++++++++++++++++++++ R/qb_reports.R | 92 ++++++--------------- R/qb_tables.R | 17 +--- R/qb_users.R | 9 -- R/qb_usertoken.R | 13 --- R/tabularization.R |only README.md | 43 +++++----- man/get_fields.Rd | 2 man/get_report.Rd | 2 man/get_reports.Rd | 2 man/query_records.Rd |only man/run_report.Rd | 2 man/update_records.Rd |only 21 files changed, 338 insertions(+), 184 deletions(-)
Title: 3D Prioritization Algorithm
Description: Three-dimensional systematic conservation planning, conducting
nested prioritization analyses across multiple depth levels and
ensuring efficient resource allocation throughout the water column
(Doxa et al. 2024 <doi:10.1111/gcb.16268>). It provides a
structured workflow designed to address biodiversity conservation
and management challenges in the 3 dimensions, while facilitating
users’ choices and parameterization.
Author: Aggeliki Doxa [aut],
Christos Adam [aut, cre],
Nikolaos Nagkoulis [aut],
Antonios Mazaris [aut],
Stelios Katsanevakis [aut]
Maintainer: Christos Adam <econp266@econ.soc.uoc.gr>
Diff between prior3D versions 0.1.0 dated 2024-08-23 and 0.1.1 dated 2024-09-26
DESCRIPTION | 35 MD5 | 27 NAMESPACE | 1 NEWS.md | 14 R/rfunctions.R | 44 README.md | 52 - inst/doc/Introduction.R | 27 inst/doc/Introduction.Rmd | 78 - inst/doc/Introduction.html | 2304 +++++++++++++++++++++++++++++++++++---------- man/figures |only vignettes/Introduction.Rmd | 78 - 11 files changed, 2036 insertions(+), 624 deletions(-)
Title: Estimate Disease Severity and Case Ascertainment
Description: Estimate the severity of a disease and ascertainment of
cases, as discussed in Nishiura et al. (2009)
<doi:10.1371/journal.pone.0006852>.
Author: Pratik R. Gupte [aut, cph] ,
Adam Kucharski [aut, cph, cre]
,
Tim Russell [aut, cph] ,
Joshua W. Lambert [rev] ,
Hugo Gruson [rev] ,
Tim Taylor [rev] ,
James M. Azam [rev] ,
Abdoelnaser M. Degoot [rev] ,
Sebastian Funk [rev]
Maintainer: Adam Kucharski <adam.kucharski@lshtm.ac.uk>
Diff between cfr versions 0.1.1 dated 2024-06-12 and 0.1.2 dated 2024-09-26
DESCRIPTION | 6 MD5 | 69 +++++----- NEWS.md | 9 + R/cfr_time_varying.R | 3 R/estimate_severity.R | 65 ++++----- README.md | 17 +- build/partial.rdb |binary build/vignette.rds |binary inst/doc/cfr.Rmd | 2 inst/doc/cfr.html | 10 - inst/doc/data_from_incidence2.Rmd | 2 inst/doc/data_from_incidence2.html | 43 +++--- inst/doc/delay_distributions.Rmd | 2 inst/doc/delay_distributions.html | 15 -- inst/doc/estimate_ascertainment.Rmd | 2 inst/doc/estimate_ascertainment.html | 93 +++++--------- inst/doc/estimate_static_severity.Rmd | 4 inst/doc/estimate_static_severity.html | 158 +++++++++++------------- inst/doc/estimate_time_varying_severity.Rmd | 2 inst/doc/estimate_time_varying_severity.html | 8 - man/cfr_time_varying.Rd | 3 man/dot-estimate_severity.Rd | 11 - man/dot-select_func_likelihood.Rd | 2 man/figures/README-fig-rolling-cfr-ebola-1.png |binary tests/testthat/_snaps/estimate_ascertainment.md | 8 - tests/testthat/_snaps/estimate_severity.md | 2 tests/testthat/_snaps/estimate_static.md | 2 tests/testthat/test-estimate_ascertainment.R | 2 tests/testthat/test-estimate_severity.R | 19 -- tests/testthat/testthat-problems.rds |only vignettes/cfr.Rmd | 2 vignettes/data_from_incidence2.Rmd | 2 vignettes/delay_distributions.Rmd | 2 vignettes/estimate_ascertainment.Rmd | 2 vignettes/estimate_static_severity.Rmd | 4 vignettes/estimate_time_varying_severity.Rmd | 2 36 files changed, 248 insertions(+), 325 deletions(-)
Title: Find Free Versions of Scholarly Publications via Unpaywall
Description: This web client interfaces Unpaywall <https://unpaywall.org/products/api>, formerly
oaDOI, a service finding free full-texts of academic papers by linking DOIs with
open access journals and repositories. It provides unified access to various data sources
for open access full-text links including Crossref and the Directory of Open Access
Journals (DOAJ). API usage is free and no registration is required.
Author: Najko Jahn [aut, cre],
Tuija Sonkkila [rev] ,
Ross Mounce [rev] ,
Anne Hobert [ctb] ,
Delwen Franzen [ctb]
Maintainer: Najko Jahn <najko.jahn@gmail.com>
Diff between roadoi versions 0.7.2 dated 2022-03-04 and 0.7.3 dated 2024-09-26
DESCRIPTION | 11 ++-- MD5 | 24 +++++----- NEWS | 7 ++ R/oadoi_fetch.r | 18 +++---- R/roadoi-package.r | 4 - README.md | 76 +++++++++++++------------------ build/vignette.rds |binary inst/doc/intro.Rmd | 66 ++++++++++++--------------- inst/doc/intro.html | 91 +++++++++++++++++--------------------- man/oadoi_fetch.Rd | 6 +- man/roadoi-package.Rd | 23 +++++++++ tests/testthat/test_oadoi_fetch.r | 4 - vignettes/intro.Rmd | 66 ++++++++++++--------------- 13 files changed, 199 insertions(+), 197 deletions(-)
Title: Rarefaction-Based Species Richness Estimator
Description: Calculate rarefaction-based alpha- and beta-diversity. Offer parametric extrapolation to estimate the total expected species in a single community and the total expected shared species between two communities. Visualize the curve-fitting for these estimators.
Author: Peng Zhao [aut, cre] ,
Yi Zou [aut]
Maintainer: Peng Zhao <pengzhao20@outlook.com>
Diff between rarestR versions 1.0.3 dated 2024-09-20 and 1.1.0 dated 2024-09-26
rarestR-1.0.3/rarestR/R/plot.TES.R |only rarestR-1.0.3/rarestR/R/plot.TESS.R |only rarestR-1.1.0/rarestR/DESCRIPTION | 8 +- rarestR-1.1.0/rarestR/MD5 | 30 ++++---- rarestR-1.1.0/rarestR/R/plot.tes.R |only rarestR-1.1.0/rarestR/R/plot.tess.R |only rarestR-1.1.0/rarestR/R/tes.R | 15 ++-- rarestR-1.1.0/rarestR/R/tess.R | 17 ++--- rarestR-1.1.0/rarestR/build/partial.rdb |binary rarestR-1.1.0/rarestR/build/vignette.rds |binary rarestR-1.1.0/rarestR/inst/doc/rarestR.R | 39 ++++++++++- rarestR-1.1.0/rarestR/inst/doc/rarestR.Rmd | 69 ++++++++++++++++++-- rarestR-1.1.0/rarestR/inst/doc/rarestR.html | 94 ++++++++++++++++++++++++++-- rarestR-1.1.0/rarestR/man/plot_tes.Rd | 2 rarestR-1.1.0/rarestR/man/plot_tess.Rd | 2 rarestR-1.1.0/rarestR/man/tes.Rd | 4 - rarestR-1.1.0/rarestR/man/tess.Rd | 6 - rarestR-1.1.0/rarestR/vignettes/rarestR.Rmd | 69 ++++++++++++++++++-- 18 files changed, 287 insertions(+), 68 deletions(-)
Title: Truncated Exponential Family
Description: Handles truncated members from the exponential family of
probability distributions. Contains functions such as rtruncnorm() and
dtruncpois(), which are truncated versions of rnorm() and dpois() from the
stats package that also offer richer output containing, for example, the
distribution parameters. It also provides functions to retrieve the original
distribution parameters from a truncated sample by maximum-likelihood
estimation.
Author: Rene Holst [aut],
Waldir Leoncio [cre, aut]
Maintainer: Waldir Leoncio <w.l.netto@medisin.uio.no>
Diff between TruncExpFam versions 1.1.1 dated 2024-02-26 and 1.2.0 dated 2024-09-26
TruncExpFam-1.1.1/TruncExpFam/R/a_rtrunc.R |only TruncExpFam-1.1.1/TruncExpFam/R/genericFunctions.R |only TruncExpFam-1.2.0/TruncExpFam/DESCRIPTION | 10 TruncExpFam-1.2.0/TruncExpFam/MD5 | 117 +- TruncExpFam-1.2.0/TruncExpFam/NAMESPACE | 27 TruncExpFam-1.2.0/TruncExpFam/NEWS.md | 10 TruncExpFam-1.2.0/TruncExpFam/R/TruncExpFam-package.R | 2 TruncExpFam-1.2.0/TruncExpFam/R/attachDistroAttributes.R | 2 TruncExpFam-1.2.0/TruncExpFam/R/averageT.R | 1 TruncExpFam-1.2.0/TruncExpFam/R/beta.R | 29 TruncExpFam-1.2.0/TruncExpFam/R/binomial.R | 33 TruncExpFam-1.2.0/TruncExpFam/R/chisq.R | 23 TruncExpFam-1.2.0/TruncExpFam/R/contbernoulli.R | 40 TruncExpFam-1.2.0/TruncExpFam/R/data.R | 16 TruncExpFam-1.2.0/TruncExpFam/R/dtrunc.R |only TruncExpFam-1.2.0/TruncExpFam/R/exponential.R | 25 TruncExpFam-1.2.0/TruncExpFam/R/gamma.R | 36 TruncExpFam-1.2.0/TruncExpFam/R/genTruncClass.R |only TruncExpFam-1.2.0/TruncExpFam/R/generic-functions-minor.R |only TruncExpFam-1.2.0/TruncExpFam/R/inverse-gamma.R | 33 TruncExpFam-1.2.0/TruncExpFam/R/inverse-gaussian.R | 25 TruncExpFam-1.2.0/TruncExpFam/R/log-normal.R | 35 TruncExpFam-1.2.0/TruncExpFam/R/mlEstimationTruncDist.R | 27 TruncExpFam-1.2.0/TruncExpFam/R/negative-binomial.R | 26 TruncExpFam-1.2.0/TruncExpFam/R/normal.R | 29 TruncExpFam-1.2.0/TruncExpFam/R/numericVector.R | 6 TruncExpFam-1.2.0/TruncExpFam/R/poisson.R | 26 TruncExpFam-1.2.0/TruncExpFam/R/prepEta.R | 2 TruncExpFam-1.2.0/TruncExpFam/R/print.R | 6 TruncExpFam-1.2.0/TruncExpFam/R/probdist-class.R | 10 TruncExpFam-1.2.0/TruncExpFam/R/ptrunc.R |only TruncExpFam-1.2.0/TruncExpFam/R/qtrunc.R |only TruncExpFam-1.2.0/TruncExpFam/R/rescaledDensities.R | 4 TruncExpFam-1.2.0/TruncExpFam/R/rtrunc.R |only TruncExpFam-1.2.0/TruncExpFam/R/rtrunc_direct.R | 138 +- TruncExpFam-1.2.0/TruncExpFam/R/sampleFromUntruncated.R | 9 TruncExpFam-1.2.0/TruncExpFam/R/validateDomain.R | 35 TruncExpFam-1.2.0/TruncExpFam/R/validateFamily.R | 3 TruncExpFam-1.2.0/TruncExpFam/R/validateNaturalParms.R | 1 TruncExpFam-1.2.0/TruncExpFam/R/validateSupport.R | 79 + TruncExpFam-1.2.0/TruncExpFam/build/vignette.rds |binary TruncExpFam-1.2.0/TruncExpFam/inst/WORDLIST |only TruncExpFam-1.2.0/TruncExpFam/inst/doc/Sampling_and_ML_estimation.html | 303 ++--- TruncExpFam-1.2.0/TruncExpFam/man/dtrunc.Rd | 17 TruncExpFam-1.2.0/TruncExpFam/man/empiricalParameters.Rd | 2 TruncExpFam-1.2.0/TruncExpFam/man/genrtruncClass.Rd | 2 TruncExpFam-1.2.0/TruncExpFam/man/mlEstimationTruncDist.Rd | 12 TruncExpFam-1.2.0/TruncExpFam/man/natural2parameters.Rd | 2 TruncExpFam-1.2.0/TruncExpFam/man/parameters2natural.Rd | 2 TruncExpFam-1.2.0/TruncExpFam/man/print.trunc.Rd | 4 TruncExpFam-1.2.0/TruncExpFam/man/ptrunc.Rd |only TruncExpFam-1.2.0/TruncExpFam/man/qtrunc.Rd |only TruncExpFam-1.2.0/TruncExpFam/man/rtrunc.Rd | 82 - TruncExpFam-1.2.0/TruncExpFam/tests/testthat/test-aliases.R | 148 ++ TruncExpFam-1.2.0/TruncExpFam/tests/testthat/test-direct-sampling.R | 508 +++++----- TruncExpFam-1.2.0/TruncExpFam/tests/testthat/test-dtrunc.R | 8 TruncExpFam-1.2.0/TruncExpFam/tests/testthat/test-empirical-parameters.R | 14 TruncExpFam-1.2.0/TruncExpFam/tests/testthat/test-estimating-from-classless.R | 12 TruncExpFam-1.2.0/TruncExpFam/tests/testthat/test-parameters2natural.R | 6 TruncExpFam-1.2.0/TruncExpFam/tests/testthat/test-printing.R | 2 TruncExpFam-1.2.0/TruncExpFam/tests/testthat/test-probdist.R | 8 TruncExpFam-1.2.0/TruncExpFam/tests/testthat/test-ptrunc-truncated-a.R |only TruncExpFam-1.2.0/TruncExpFam/tests/testthat/test-ptrunc-truncated-ab.R |only TruncExpFam-1.2.0/TruncExpFam/tests/testthat/test-ptrunc-truncated-b.R |only TruncExpFam-1.2.0/TruncExpFam/tests/testthat/test-ptrunc-untruncated.R |only TruncExpFam-1.2.0/TruncExpFam/tests/testthat/test-qtrunc-truncated-a.R |only TruncExpFam-1.2.0/TruncExpFam/tests/testthat/test-qtrunc-truncated-ab.R |only TruncExpFam-1.2.0/TruncExpFam/tests/testthat/test-qtrunc-truncated-b.R |only TruncExpFam-1.2.0/TruncExpFam/tests/testthat/test-qtrunc-untruncated.R |only 69 files changed, 1245 insertions(+), 752 deletions(-)