Title: Supporting Functions for Packages Maintained by 'Yihui Xie'
Description: Miscellaneous functions commonly used in other packages maintained by 'Yihui Xie'.
Author: Yihui Xie [aut, cre, cph] ,
Wush Wu [ctb],
Daijiang Li [ctb],
Xianying Tan [ctb],
Salim Brueggemann [ctb] ,
Christophe Dervieux [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between xfun versions 0.47 dated 2024-08-16 and 0.48 dated 2024-10-03
DESCRIPTION | 17 +--- MD5 | 57 +++++++------- NAMESPACE | 7 + NEWS.md | 14 +++ R/app.R | 2 R/base64.R | 104 +++++++++++++++++++++----- R/cache.R | 48 ++++++------ R/io.R | 5 - R/markdown.R | 23 ++--- R/packages.R | 12 ++- R/paths.R | 26 ++++++ R/record.R | 10 ++ R/revcheck.R | 8 -- R/string.R | 92 ++++++++++++++++++++++- R/yaml.R | 4 - inst/doc/xfun.R | 49 ++++-------- inst/doc/xfun.Rmd | 12 +-- inst/doc/xfun.html | 169 +++++++++++++++++++++---------------------- inst/scripts/mime-type.txt |only man/base64_uri.Rd | 10 -- man/base_pkgs.Rd | 6 - man/embed_file.Rd | 20 +---- man/file_rename.Rd |only man/gsub_file.Rd | 3 man/html_tag.Rd |only man/md5.Rd | 8 +- man/mime_type.Rd |only man/record_print.Rd | 3 man/yaml_body.Rd | 2 tests/test-ci/test-base64.R |only tests/test-cran/test-paths.R | 54 +++++++++++-- vignettes/xfun.Rmd | 12 +-- 32 files changed, 497 insertions(+), 280 deletions(-)
Title: Extra String Manipulation Functions
Description: There are some things that I wish were easier with the
'stringr' or 'stringi' packages. The foremost of these is the
extraction of numbers from strings. 'stringr' and 'stringi' make you
figure out the regular expression for yourself; 'strex' takes care of
this for you. There are many other handy functionalities in 'strex'.
Contributions to this package are encouraged; it is intended as a
miscellany of string manipulation functions that cannot be found in
'stringi' or 'stringr'.
Author: Rory Nolan [aut, cre]
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between strex versions 2.0.0 dated 2024-01-31 and 2.0.1 dated 2024-10-03
DESCRIPTION | 8 ++++---- MD5 | 36 ++++++++++++++++++------------------ NEWS.md | 6 ++++++ R/arg-match.R | 12 ++++++------ R/strex-package.R | 3 +-- R/trim.R | 15 ++++++++------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/alphordering-numbers.html | 8 ++++---- inst/doc/argument-matching.html | 8 ++++---- inst/doc/before-and-after.html | 8 ++++---- inst/doc/detection.html | 8 ++++---- inst/doc/important-miscellany.html | 8 ++++---- inst/doc/numbers-in-strings.html | 8 ++++---- man/str_extract_numbers.Rd | 4 ++-- man/str_nth_number_after_mth.Rd | 4 ++-- man/str_nth_number_before_mth.Rd | 4 ++-- man/str_paste_elems.Rd | 4 ++-- man/strex.Rd | 13 +++++++++++++ 19 files changed, 88 insertions(+), 69 deletions(-)
Title: SPArse Matrix
Description: Set of functions for sparse matrix algebra.
Differences with other sparse matrix packages are:
(1) we only support (essentially) one sparse matrix format,
(2) based on transparent and simple structure(s),
(3) tailored for MCMC calculations within G(M)RF.
(4) and it is fast and scalable (with the extension package spam64).
Documentation about 'spam' is provided by vignettes included in this package, see also Furrer and Sain (2010) <doi:10.18637/jss.v036.i10>; see 'citation("spam")' for details.
Author: Reinhard Furrer [aut, cre] ,
Florian Gerber [aut] ,
Roman Flury [aut] ,
Daniel Gerber [ctb],
Kaspar Moesinger [ctb],
Annina Cincera [ctb],
Youcef Saad [ctb] ,
Esmond G. Ng [ctb] ,
Barry W. Peyton [ctb] ,
Joseph W.H. Liu [ctb] ,
Alan D. George [ctb] , [...truncated...]
Maintainer: Reinhard Furrer <reinhard.furrer@math.uzh.ch>
Diff between spam versions 2.10-0 dated 2023-10-23 and 2.11-0 dated 2024-10-03
DESCRIPTION | 14 ++--- MD5 | 45 +++++++++--------- NEWS.md | 11 ++++ R/tmp.R |only R/xybind.R | 76 ++++++++++++++++++++++++++----- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 32 +++++-------- inst/doc/spam.pdf |binary man/Math2.Rd | 1 man/cbind.Rd | 10 ++-- man/random.Rd | 4 + src/init.c | 2 src/xybind.f | 33 +++++++++++++ tests/Examples/spam-Ex.Rout.save | 57 +++++++++++------------ tests/demo_cholesky.Rout.save | 8 +-- tests/demo_jss10-example1.Rout.save | 8 +-- tests/demo_jss10-figures-table.Rout.save | 8 +-- tests/demo_jss15-BYM.Rout.save | 8 +-- tests/demo_jss15-Leroux.Rout.save | 8 +-- tests/demo_spam.Rout.save | 8 +-- tests/demo_timing.Rout.save | 8 +-- tests/jss_areal_counts.Rout.save | 8 +-- tests/testthat.Rout.save | 8 +-- 24 files changed, 228 insertions(+), 129 deletions(-)
Title: Easily Access and Maintain Time-Based Versioned Data
(Slowly-Changing-Dimension)
Description: A collection of functions that enable easy access and updating of a database of data over time.
More specifically, the package facilitates type-2 history for data-warehouses and provides a number
of Quality of life improvements for working on SQL databases with R.
For reference see Ralph Kimball and Margy Ross (2013, ISBN 9781118530801).
Author: Rasmus Skytte Randloev [aut, cre, rev]
,
Marcus Munch Gruenewald [aut] ,
Lasse Engbo Christiansen [rev]
,
Statens Serum Institut [cph, fnd]
Maintainer: Rasmus Skytte Randloev <rske@ssi.dk>
Diff between SCDB versions 0.4.0 dated 2024-03-21 and 0.4.1 dated 2024-10-03
DESCRIPTION | 8 MD5 | 50 +- NEWS.md | 530 +++++++++++++++---------------- R/0_linters.R | 12 R/Logger.R | 9 R/db_joins.R | 5 R/get_schema.R | 17 R/get_table.R | 11 R/get_tables.R | 5 R/locks.R | 24 - build/vignette.rds |binary inst/doc/SCDB.html | 16 inst/doc/slowly-changing-dimension.R | 272 +++++++-------- inst/doc/slowly-changing-dimension.Rmd | 484 ++++++++++++++-------------- inst/doc/slowly-changing-dimension.html | 151 +------- man/joins.Rd | 4 tests/testthat/helper-setup.R | 2 tests/testthat/setup.R | 9 tests/testthat/test-Logger.R | 15 tests/testthat/test-db_joins.R | 24 - tests/testthat/test-digest_to_checksum.R | 4 tests/testthat/test-get_schema.R | 2 tests/testthat/test-get_tables.R | 51 ++ tests/testthat/test-interlace.R | 16 tests/testthat/test-update_snapshot.R | 20 - vignettes/slowly-changing-dimension.Rmd | 484 ++++++++++++++-------------- 26 files changed, 1090 insertions(+), 1135 deletions(-)
Title: Fit and Compare Species-Area Relationship Models Using
Multimodel Inference
Description: Implements the basic elements of the multi-model
inference paradigm for up to twenty species-area relationship models (SAR), using simple
R list-objects and functions, as in Triantis et al. 2012 <DOI:10.1111/j.1365-2699.2011.02652.x>.
The package is scalable and users can easily create their own model and data objects. Additional
SAR related functions are provided.
Author: Thomas J. Matthews [aut, cre] ,
Francois Guilhaumon [aut] ,
Kevin Cazelles [rev]
Maintainer: Thomas J. Matthews <txm676@gmail.com>
Diff between sars versions 1.3.6 dated 2022-12-14 and 1.3.7 dated 2024-10-03
DESCRIPTION | 10 MD5 | 144 ++++++------- NAMESPACE | 4 NEWS.md | 8 R/class_plot.R | 79 ++++++- R/class_print.R | 224 ++++++++++++-------- R/class_summary.R | 133 ++++++++++++ R/data_habitat.R |only R/optim.R | 11 - R/sar_asymp.R | 46 ++-- R/sar_average.R | 68 +++--- R/sar_betap.R | 46 ++-- R/sar_chapman.R | 46 ++-- R/sar_epm1.R | 46 ++-- R/sar_epm2.R | 46 ++-- R/sar_gompertz.R | 46 ++-- R/sar_habitat.R |only R/sar_heleg.R | 46 ++-- R/sar_koba.R | 46 ++-- R/sar_linear.R | 35 +-- R/sar_loga.R | 46 ++-- R/sar_logistic.R | 46 ++-- R/sar_mmf.R | 46 ++-- R/sar_monod.R | 46 ++-- R/sar_negexpo.R | 46 ++-- R/sar_p1.R | 46 ++-- R/sar_p2.R | 46 ++-- R/sar_power.R | 46 ++-- R/sar_powerR.R | 46 ++-- R/sar_ratio.R | 46 ++-- R/sar_threshold.R | 14 + R/sar_weibull3.R | 46 ++-- R/sar_weibull4.R | 46 ++-- R/sars.R | 4 README.md | 20 - build/vignette.rds |binary data/habitat.rda |only inst/CITATION | 18 - inst/REFERENCES.bib | 4 inst/doc/sars-r-package.R | 10 inst/doc/sars-r-package.html | 340 +++++++++++++++---------------- inst/model_factory.R | 70 +++--- man/figures/README-unnamed-chunk-5-1.png |binary man/habitat.Rd |only man/plot.habitat.Rd |only man/plot.multi.Rd | 34 ++- man/plot.threshold.Rd | 8 man/sar_asymp.Rd | 46 ++-- man/sar_average.Rd | 43 ++- man/sar_betap.Rd | 46 ++-- man/sar_chapman.Rd | 46 ++-- man/sar_epm1.Rd | 46 ++-- man/sar_epm2.Rd | 46 ++-- man/sar_gompertz.Rd | 46 ++-- man/sar_habitat.Rd |only man/sar_heleg.Rd | 46 ++-- man/sar_koba.Rd | 46 ++-- man/sar_linear.Rd | 35 +-- man/sar_loga.Rd | 46 ++-- man/sar_logistic.Rd | 46 ++-- man/sar_mmf.Rd | 46 ++-- man/sar_monod.Rd | 46 ++-- man/sar_negexpo.Rd | 46 ++-- man/sar_p1.Rd | 46 ++-- man/sar_p2.Rd | 46 ++-- man/sar_power.Rd | 46 ++-- man/sar_powerR.Rd | 46 ++-- man/sar_ratio.Rd | 46 ++-- man/sar_threshold.Rd | 14 + man/sar_weibull3.Rd | 46 ++-- man/sar_weibull4.Rd | 46 ++-- man/sars-package.Rd | 167 +++++++-------- man/summary.sars.Rd | 5 tests/testthat.R | 3 tests/testthat/test_multi.R | 31 ++ vignettes/REFERENCES.bib | 11 - 76 files changed, 1871 insertions(+), 1516 deletions(-)
Title: Paws Low-Level Amazon Web Services API
Description: Functions for making low-level API requests to Amazon Web Services
<https://aws.amazon.com>. The functions handle building, signing, and
sending requests, and receiving responses. They are designed to help build
higher-level interfaces to individual services, such as Simple Storage
Service (S3).
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.common versions 0.7.6 dated 2024-09-04 and 0.7.7 dated 2024-10-03
DESCRIPTION | 6 +- MD5 | 64 ++++++++++++++--------------- NEWS.md | 5 ++ R/cache.R | 2 R/config.R | 7 ++- R/credential_providers.R | 63 +++++++++------------------- R/credentials.R | 9 +++- R/custom_s3.R | 6 +- R/handlers_core.R | 11 ---- R/handlers_rest.R | 2 R/iniutil.R | 6 +- R/net.R | 3 - R/onLoad.R | 1 R/paginate.R | 22 ++++----- R/queryutil.R | 2 R/service.R | 1 R/util.R | 11 ++++ tests/testthat/test_credential_providers.R | 21 --------- tests/testthat/test_credentials.R | 20 ++++++++- tests/testthat/test_custom_s3.R | 2 tests/testthat/test_escape.R | 6 +- tests/testthat/test_handlers.R | 4 - tests/testthat/test_handlers_core.R | 19 ++++---- tests/testthat/test_handlers_ec2query.R | 4 - tests/testthat/test_handlers_jsonrpc.R | 22 ++++----- tests/testthat/test_handlers_query.R | 4 - tests/testthat/test_handlers_restxml.R | 4 - tests/testthat/test_iniutil.R | 4 - tests/testthat/test_net.R | 2 tests/testthat/test_retry.R | 2 tests/testthat/test_service.R | 12 ++--- tests/testthat/test_struct.R | 2 tests/testthat/test_util.R | 56 ++++++++++++------------- 33 files changed, 195 insertions(+), 210 deletions(-)
Title: Multivariate Probabilities of Scale Mixtures of Multivariate
Normal Distributions via the Genz and Bretz (2002) QRSVN Method
Description: Generates multivariate subgaussian stable probabilities using the QRSVN
algorithm as detailed in Genz and Bretz (2002) <DOI:10.1198/106186002394>
but by sampling positive stable variates not chi/sqrt(nu).
Author: Alan Genz [aut] ,
Bruce Swihart [aut, cre]
Maintainer: Bruce Swihart <bruce.swihart@gmail.com>
Diff between mvgb versions 0.0.5 dated 2024-09-20 and 0.0.6 dated 2024-10-03
DESCRIPTION | 6 +- MD5 | 6 +- NEWS.md | 6 ++ src/mvtdstpack.f | 127 ++++++++++++++++++++++++++++--------------------------- 4 files changed, 76 insertions(+), 69 deletions(-)
Title: Cluster Extension for 'mlr3'
Description: Extends the 'mlr3' package with cluster analysis.
Author: Damir Pulatov [cre, aut],
Michel Lang [aut] ,
Maximilian Muecke [ctb]
Maintainer: Damir Pulatov <damirpolat@protonmail.com>
Diff between mlr3cluster versions 0.1.9 dated 2024-03-18 and 0.1.10 dated 2024-10-03
mlr3cluster-0.1.10/mlr3cluster/DESCRIPTION | 48 +- mlr3cluster-0.1.10/mlr3cluster/MD5 | 171 +++++----- mlr3cluster-0.1.10/mlr3cluster/NAMESPACE | 3 mlr3cluster-0.1.10/mlr3cluster/NEWS.md | 6 mlr3cluster-0.1.10/mlr3cluster/R/LearnerClust.R | 3 mlr3cluster-0.1.10/mlr3cluster/R/LearnerClustAffinityPropagation.R | 10 mlr3cluster-0.1.10/mlr3cluster/R/LearnerClustAgnes.R | 47 +- mlr3cluster-0.1.10/mlr3cluster/R/LearnerClustBICO.R |only mlr3cluster-0.1.10/mlr3cluster/R/LearnerClustBIRCH.R |only mlr3cluster-0.1.10/mlr3cluster/R/LearnerClustCMeans.R | 19 - mlr3cluster-0.1.10/mlr3cluster/R/LearnerClustCobweb.R | 11 mlr3cluster-0.1.10/mlr3cluster/R/LearnerClustDBSCAN.R | 24 - mlr3cluster-0.1.10/mlr3cluster/R/LearnerClustDBSCANfpc.R | 18 - mlr3cluster-0.1.10/mlr3cluster/R/LearnerClustDiana.R | 21 - mlr3cluster-0.1.10/mlr3cluster/R/LearnerClustEM.R | 11 mlr3cluster-0.1.10/mlr3cluster/R/LearnerClustFanny.R | 8 mlr3cluster-0.1.10/mlr3cluster/R/LearnerClustFarthestFirst.R | 11 mlr3cluster-0.1.10/mlr3cluster/R/LearnerClustFeatureless.R | 4 mlr3cluster-0.1.10/mlr3cluster/R/LearnerClustHDBSCAN.R | 14 mlr3cluster-0.1.10/mlr3cluster/R/LearnerClustHclust.R | 30 - mlr3cluster-0.1.10/mlr3cluster/R/LearnerClustKKMeans.R | 37 +- mlr3cluster-0.1.10/mlr3cluster/R/LearnerClustKMeans.R | 16 mlr3cluster-0.1.10/mlr3cluster/R/LearnerClustMclust.R | 9 mlr3cluster-0.1.10/mlr3cluster/R/LearnerClustMeanShift.R | 11 mlr3cluster-0.1.10/mlr3cluster/R/LearnerClustMiniBatchKMeans.R | 61 +-- mlr3cluster-0.1.10/mlr3cluster/R/LearnerClustOPTICS.R | 24 - mlr3cluster-0.1.10/mlr3cluster/R/LearnerClustPAM.R | 24 - mlr3cluster-0.1.10/mlr3cluster/R/LearnerClustSimpleKMeans.R | 11 mlr3cluster-0.1.10/mlr3cluster/R/LearnerClustXMeans.R | 11 mlr3cluster-0.1.10/mlr3cluster/R/MeasureClustInternal.R | 8 mlr3cluster-0.1.10/mlr3cluster/R/PredictionClust.R | 1 mlr3cluster-0.1.10/mlr3cluster/R/PredictionDataClust.R | 17 mlr3cluster-0.1.10/mlr3cluster/R/TaskClust.R | 2 mlr3cluster-0.1.10/mlr3cluster/R/TaskClust_ruspini.R | 16 mlr3cluster-0.1.10/mlr3cluster/R/TaskClust_usarrest.R | 17 mlr3cluster-0.1.10/mlr3cluster/R/as_prediction_clust.R | 4 mlr3cluster-0.1.10/mlr3cluster/R/as_task_clust.R | 17 mlr3cluster-0.1.10/mlr3cluster/R/bibentries.R | 45 ++ mlr3cluster-0.1.10/mlr3cluster/R/helper.R | 5 mlr3cluster-0.1.10/mlr3cluster/R/zzz.R | 81 ++-- mlr3cluster-0.1.10/mlr3cluster/README.md | 116 +++--- mlr3cluster-0.1.10/mlr3cluster/man/LearnerClust.Rd | 17 mlr3cluster-0.1.10/mlr3cluster/man/MeasureClust.Rd | 14 mlr3cluster-0.1.10/mlr3cluster/man/PredictionClust.Rd | 3 mlr3cluster-0.1.10/mlr3cluster/man/TaskClust.Rd | 14 mlr3cluster-0.1.10/mlr3cluster/man/as_task_clust.Rd | 8 mlr3cluster-0.1.10/mlr3cluster/man/mlr3cluster-package.Rd | 5 mlr3cluster-0.1.10/mlr3cluster/man/mlr_learners_clust.MBatchKMeans.Rd | 11 mlr3cluster-0.1.10/mlr3cluster/man/mlr_learners_clust.SimpleKMeans.Rd | 11 mlr3cluster-0.1.10/mlr3cluster/man/mlr_learners_clust.agnes.Rd | 9 mlr3cluster-0.1.10/mlr3cluster/man/mlr_learners_clust.ap.Rd | 9 mlr3cluster-0.1.10/mlr3cluster/man/mlr_learners_clust.bico.Rd |only mlr3cluster-0.1.10/mlr3cluster/man/mlr_learners_clust.birch.Rd |only mlr3cluster-0.1.10/mlr3cluster/man/mlr_learners_clust.cmeans.Rd | 11 mlr3cluster-0.1.10/mlr3cluster/man/mlr_learners_clust.cobweb.Rd | 9 mlr3cluster-0.1.10/mlr3cluster/man/mlr_learners_clust.dbscan.Rd | 9 mlr3cluster-0.1.10/mlr3cluster/man/mlr_learners_clust.dbscan_fpc.Rd | 11 mlr3cluster-0.1.10/mlr3cluster/man/mlr_learners_clust.diana.Rd | 9 mlr3cluster-0.1.10/mlr3cluster/man/mlr_learners_clust.em.Rd | 9 mlr3cluster-0.1.10/mlr3cluster/man/mlr_learners_clust.fanny.Rd | 9 mlr3cluster-0.1.10/mlr3cluster/man/mlr_learners_clust.featureless.Rd | 9 mlr3cluster-0.1.10/mlr3cluster/man/mlr_learners_clust.ff.Rd | 9 mlr3cluster-0.1.10/mlr3cluster/man/mlr_learners_clust.hclust.Rd | 11 mlr3cluster-0.1.10/mlr3cluster/man/mlr_learners_clust.hdbscan.Rd | 9 mlr3cluster-0.1.10/mlr3cluster/man/mlr_learners_clust.kkmeans.Rd | 9 mlr3cluster-0.1.10/mlr3cluster/man/mlr_learners_clust.kmeans.Rd | 9 mlr3cluster-0.1.10/mlr3cluster/man/mlr_learners_clust.mclust.Rd | 13 mlr3cluster-0.1.10/mlr3cluster/man/mlr_learners_clust.meanshift.Rd | 9 mlr3cluster-0.1.10/mlr3cluster/man/mlr_learners_clust.optics.Rd | 9 mlr3cluster-0.1.10/mlr3cluster/man/mlr_learners_clust.pam.Rd | 11 mlr3cluster-0.1.10/mlr3cluster/man/mlr_learners_clust.xmeans.Rd | 13 mlr3cluster-0.1.10/mlr3cluster/man/mlr_measures_clust.ch.Rd | 2 mlr3cluster-0.1.10/mlr3cluster/man/mlr_measures_clust.dunn.Rd | 2 mlr3cluster-0.1.10/mlr3cluster/man/mlr_measures_clust.silhouette.Rd | 2 mlr3cluster-0.1.10/mlr3cluster/man/mlr_measures_clust.wss.Rd | 2 mlr3cluster-0.1.10/mlr3cluster/man/mlr_tasks_ruspini.Rd | 49 ++ mlr3cluster-0.1.10/mlr3cluster/man/mlr_tasks_usarrests.Rd | 42 ++ mlr3cluster-0.1.10/mlr3cluster/tests/testthat/Rplots.pdf |binary mlr3cluster-0.1.10/mlr3cluster/tests/testthat/helper.R | 4 mlr3cluster-0.1.10/mlr3cluster/tests/testthat/test_PredictionClust.R | 24 + mlr3cluster-0.1.10/mlr3cluster/tests/testthat/test_mlr_learners_clust_agnes.R | 8 mlr3cluster-0.1.10/mlr3cluster/tests/testthat/test_mlr_learners_clust_ap.R | 2 mlr3cluster-0.1.10/mlr3cluster/tests/testthat/test_mlr_learners_clust_bico.R |only mlr3cluster-0.1.10/mlr3cluster/tests/testthat/test_mlr_learners_clust_birch.R |only mlr3cluster-0.1.10/mlr3cluster/tests/testthat/test_mlr_learners_clust_diana.R | 8 mlr3cluster-0.1.10/mlr3cluster/tests/testthat/test_mlr_learners_clust_fanny.R | 8 mlr3cluster-0.1.10/mlr3cluster/tests/testthat/test_mlr_learners_clust_hclust.R | 8 mlr3cluster-0.1.10/mlr3cluster/tests/testthat/test_mlr_learners_clust_mbatchkmeans.R | 5 mlr3cluster-0.1.10/mlr3cluster/tests/testthat/test_mlr_learners_clust_meanshift.R | 8 mlr3cluster-0.1.9/mlr3cluster/R/aaa.R |only 90 files changed, 849 insertions(+), 596 deletions(-)
Title: A Power Analysis Toolbox to Find Cost-Efficient Study Designs
Description: We implement a surrogate modeling algorithm to guide simulation-based
sample size planning. The method is described in detail in our paper (Zimmer &
Debelak (2023) <doi:10.1037/met0000611>). It supports multiple study design
parameters and optimization with respect to a cost function. It can find
optimal designs that correspond to a desired statistical power or that fulfill
a cost constraint. We also provide a tutorial paper (Zimmer et al. (2023)
<doi:10.3758/s13428-023-02269-0>).
Author: Felix Zimmer [aut, cre] ,
Rudolf Debelak [aut] ,
Marc Egli [ctb]
Maintainer: Felix Zimmer <felix.zimmer@mail.de>
Diff between mlpwr versions 1.1.0 dated 2023-08-07 and 1.1.1 dated 2024-10-03
DESCRIPTION | 32 MD5 | 68 + NAMESPACE | 16 NEWS.md | 5 R/check.term.R | 84 - R/find.design.R | 7 R/helper.R | 383 ++++---- R/initpoints.R | 106 +- R/plot1d.R | 240 ++--- R/plot2d_line.R | 248 ++--- R/summary.designresult.R | 186 ++-- README.md | 303 +++---- build/vignette.rds |binary inst/CITATION |only inst/doc/ANOVA_Vignette.R |only inst/doc/ANOVA_Vignette.Rmd |only inst/doc/ANOVA_Vignette.html |only inst/doc/GLM_Vignette.R |only inst/doc/GLM_Vignette.Rmd |only inst/doc/GLM_Vignette.html |only inst/doc/IRT_Vignette.R |only inst/doc/IRT_Vignette.Rmd |only inst/doc/IRT_Vignette.html |only inst/doc/MLM_Vignette.R |only inst/doc/MLM_Vignette.Rmd |only inst/doc/MLM_Vignette.html |only inst/doc/extensions.R | 336 +++---- inst/doc/extensions.html | 1324 +++++++++++++++---------------- inst/doc/simulation_functions.R | 510 +++++------ inst/doc/simulation_functions.html | 1306 +++++++++++++++--------------- inst/doc/ttest_Vignette.R |only inst/doc/ttest_Vignette.Rmd |only inst/doc/ttest_Vignette.html |only inst/extdata |only man/figures/README-unnamed-chunk-8-1.png |binary man/find.design.Rd | 300 +++---- man/plot.designresult.Rd | 102 +- man/simulations_data.Rd | 64 - vignettes/ANOVA_Vignette.Rmd |only vignettes/GLM_Vignette.Rmd |only vignettes/IRT_Vignette.Rmd |only vignettes/MLM_Vignette.Rmd |only vignettes/ttest_Vignette.Rmd |only 43 files changed, 2827 insertions(+), 2793 deletions(-)
Title: Basic Functions in Knowledge Space Theory Using Matrix
Representation
Description: Knowledge space theory by Doignon and Falmagne (1999)
<doi:10.1007/978-3-642-58625-5> is a set- and order-theoretical
framework, which proposes mathematical formalisms to operationalize
knowledge structures in a particular domain. The 'kstMatrix' package
provides basic functionalities to generate, handle, and manipulate
knowledge structures and knowledge spaces. Opposed to the 'kst'
package, 'kstMatrix' uses matrix representations for knowledge
structures. Furthermore, 'kstMatrix' contains several knowledge spaces
developed by the research group around Cornelia Dowling through
querying experts.
Author: Cord Hockemeyer [aut, cre],
Wai Wong [ctb]
Maintainer: Cord Hockemeyer <cord.hockemeyer@uni-graz.at>
Diff between kstMatrix versions 1.0-0 dated 2024-09-01 and 1.0-1 dated 2024-10-03
Changelog | 4 + DESCRIPTION | 8 +- MD5 | 18 ++-- R/kmsurmisefunction.R | 150 ++++++++++++++++------------------------ R/kmunionclosure.R | 4 - inst/doc/kstMatrix.html | 176 +++++++++++++++++++++++++++++------------------- src/basis.c | 24 ++++++ src/helpers.c | 7 + src/kstMatrix.h | 1 src/kstMatrix_init.c | 12 +++ 10 files changed, 235 insertions(+), 169 deletions(-)
Title: IRT Equating Methods
Description: Computation of direct, chain and average (bisector) equating coefficients with
standard errors using Item Response Theory (IRT) methods for dichotomous items
(Battauz (2013) <doi:10.1007/s11336-012-9316-y>,
Battauz (2015) <doi:10.18637/jss.v068.i07>).
Test scoring can be performed by true score equating and observed score equating methods.
DIF detection can be performed using a Wald-type test
(Battauz (2019) <doi:10.1007/s10260-018-00442-w>).
The package includes tests to assess the stability of the equating transformations
(Battauz(2022) <doi:10.1111/stan.12277>).
Author: Michela Battauz [aut, cre]
Maintainer: Michela Battauz <michela.battauz@uniud.it>
Diff between equateIRT versions 2.5.0 dated 2024-07-30 and 2.5.1 dated 2024-10-03
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/functions.r | 18 ++++++++++++------ inst/NEWS | 5 ++--- inst/doc/equateIRT_paper.pdf |binary inst/doc/equateIRT_tutorial.html | 2 +- 6 files changed, 23 insertions(+), 18 deletions(-)
Title: Statistical Methods for Survival Data with Dependent Censoring
Description: Several statistical methods for analyzing survival data under various forms of dependent
censoring are implemented in the package. In addition to accounting for dependent censoring, it
offers tools to adjust for unmeasured confounding factors. The implemented approaches allow
users to estimate the dependency between survival time and dependent censoring time, based
solely on observed survival data. For more details on the methods, refer to Deresa and Van
Keilegom (2021) <doi:10.1093/biomet/asaa095>, Czado and Van Keilegom (2023)
<doi:10.1093/biomet/asac067>, Crommen et al. (2024) <doi:10.1007/s11749-023-00903-9>
and Willems et al. (2024+) <doi:10.48550/arXiv.2403.11860>.
Author: Ilias Willems [aut] ,
Gilles Crommen [aut] ,
Negera Wakgari Deresa [aut, cre]
,
Ingrid Van Keilegom [aut]
Maintainer: Negera Wakgari Deresa <negera.deresa@gmail.com>
Diff between depCensoring versions 0.1.1 dated 2024-10-02 and 0.1.2 dated 2024-10-03
DESCRIPTION | 21 +++++++++++---------- MD5 | 5 +++-- NEWS.md | 4 ++++ man/figures |only 4 files changed, 18 insertions(+), 12 deletions(-)
Title: Analysis Results Data
Description: Construct CDISC (Clinical Data Interchange Standards
Consortium) compliant Analysis Results Data objects. These objects are
used and re-used to construct summary tables, visualizations, and
written reports. The package also exports utilities for working with
these objects and creating new Analysis Results Data objects.
Author: Daniel D. Sjoberg [aut, cre] ,
Becca Krouse [aut],
Emily de la Rua [aut],
F. Hoffmann-La Roche AG [cph, fnd],
GlaxoSmithKline Research & Development Limited [cph]
Maintainer: Daniel D. Sjoberg <danield.sjoberg@gmail.com>
Diff between cards versions 0.2.2 dated 2024-09-02 and 0.3.0 dated 2024-10-03
DESCRIPTION | 6 - MD5 | 99 +++++++++++------- NAMESPACE | 13 ++ NEWS.md | 28 +++++ R/apply_fmt_fn.R | 23 +++- R/ard_attributes.R | 19 +++ R/ard_categorical.R | 5 R/ard_continuous.R | 7 + R/ard_hierarchical.R | 49 +++------ R/ard_stack.R | 33 ++++-- R/ard_stack_hierarchical.R |only R/ard_strata.R |only R/eval_capture_conditions.R | 80 ++++++++++++++- R/import-standalone-checks.R | 105 +++++++++++++++++-- R/import-standalone-cli_call_env.R | 1 R/import-standalone-stringr.R | 122 ++++++++++++++++++++--- R/import-standalone-tibble.R |only R/mock.R |only R/replace_null_statistic.R | 2 R/shift_ard_columns.R | 62 +++++++++-- R/update_ard.R |only README.md | 12 ++ inst/WORDLIST | 5 man/ard_hierarchical.Rd | 14 +- man/ard_stack.Rd | 5 man/ard_stack_hierarchical.Rd |only man/ard_strata.Rd |only man/eval_capture_conditions.Rd | 51 +++++++++ man/mock.Rd |only man/rename_ard_columns.Rd | 18 ++- man/replace_null_statistic.Rd | 2 man/update_ard.Rd |only tests/testthat/_snaps/apply_fmt_fn.md | 2 tests/testthat/_snaps/ard_attributes.md | 18 ++- tests/testthat/_snaps/ard_categorical.md | 18 +++ tests/testthat/_snaps/ard_complex.md | 19 +++ tests/testthat/_snaps/ard_continuous.md | 18 +++ tests/testthat/_snaps/ard_dichotomous.md | 18 +++ tests/testthat/_snaps/ard_hierarchical.md | 36 ++++++ tests/testthat/_snaps/ard_stack.md | 52 +++++++++ tests/testthat/_snaps/ard_stack_hierarchical.md |only tests/testthat/_snaps/ard_strata.md |only tests/testthat/_snaps/eval_capture_conditions.md | 55 ++++++++++ tests/testthat/_snaps/mock.md |only tests/testthat/_snaps/print.md | 2 tests/testthat/_snaps/rename_ard_columns.md |only tests/testthat/_snaps/update_ard.md |only tests/testthat/test-ard_attributes.R | 19 +++ tests/testthat/test-ard_categorical.R | 18 +++ tests/testthat/test-ard_complex.R | 26 ++++ tests/testthat/test-ard_continuous.R | 24 ++++ tests/testthat/test-ard_dichotomous.R | 25 ++++ tests/testthat/test-ard_hierarchical.R | 50 +++++++++ tests/testthat/test-ard_stack.R | 33 ++++++ tests/testthat/test-ard_stack_hierarchical.R |only tests/testthat/test-ard_strata.R |only tests/testthat/test-eval_capture_conditions.R | 54 ++++++++++ tests/testthat/test-mock.R |only tests/testthat/test-rename_ard_columns.R |only tests/testthat/test-update_ard.R |only 60 files changed, 1088 insertions(+), 160 deletions(-)
Title: Bitwise Operations
Description: Functions for bitwise operations on integer vectors.
Author: Steve Dutky [aut] revised and
modified),
Martin Maechler [cre, aut]
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between bitops versions 1.0-8 dated 2024-07-29 and 1.0-9 dated 2024-10-03
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/bit-ops.c | 3 ++- 3 files changed, 8 insertions(+), 7 deletions(-)
Title: Bayesian Cure Rate Modeling for Time-to-Event Data
Description: A fully Bayesian approach in order to estimate a general family of cure rate models under the presence of covariates, see Papastamoulis and Milienos (2024) <doi:10.1007/s11749-024-00942-w>. The promotion time can be modelled (a) parametrically using typical distributional assumptions for time to event data (including the Weibull, Exponential, Gompertz, log-Logistic distributions), or (b) semiparametrically using finite mixtures of distributions. In both cases, user-defined families of distributions are allowed under some specific requirements. Posterior inference is carried out by constructing a Metropolis-coupled Markov chain Monte Carlo (MCMC) sampler, which combines Gibbs sampling for the latent cure indicators and Metropolis-Hastings steps with Langevin diffusion dynamics for parameter updates. The main MCMC algorithm is embedded within a parallel tempering scheme by considering heated versions of the target posterior distribution.
Author: Panagiotis Papastamoulis [aut, cre]
,
Fotios Milienos [aut]
Maintainer: Panagiotis Papastamoulis <papapast@yahoo.gr>
Diff between bayesCureRateModel versions 1.2 dated 2024-09-14 and 1.3 dated 2024-10-03
DESCRIPTION | 8 MD5 | 21 - NAMESPACE | 7 R/bayesian_cure_rate_model.R | 504 ++++++++++++++++++++++++++++++++-- build/partial.rdb |binary man/bayesCureRateModel-package.Rd | 10 man/logLik.bayesCureModel.Rd |only man/plot.bayesCureModel.Rd | 13 man/plot.predict_bayesCureModel.Rd |only man/predict.bayesCureModel.Rd | 4 man/print.predict_bayesCureModel.Rd |only man/print.summary_bayesCureModel.Rd |only man/summary.bayesCureModel.Rd | 2 man/summary.predict_bayesCureModel.Rd |only 14 files changed, 515 insertions(+), 54 deletions(-)
More information about bayesCureRateModel at CRAN
Permanent link
Title: Estimate and Manipulate Age-Depth Models
Description: Estimate age-depth models from stratigraphic and sedimentological data,
and transform data
between the time and stratigraphic domain.
Author: Niklas Hohmann [aut, cre]
Maintainer: Niklas Hohmann <N.H.Hohmann@uu.nl>
Diff between admtools versions 0.3.1 dated 2024-09-02 and 0.4.0 dated 2024-10-03
admtools-0.3.1/admtools/data/CarboCatLite_data.rda |only admtools-0.4.0/admtools/DESCRIPTION | 9 - admtools-0.4.0/admtools/MD5 | 116 +++++++------- admtools-0.4.0/admtools/NAMESPACE | 3 admtools-0.4.0/admtools/NEWS.md | 92 +++++------ admtools-0.4.0/admtools/R/adm_summary.R | 8 admtools-0.4.0/admtools/R/anchor.R |only admtools-0.4.0/admtools/R/eTimeOpt_functionality.R | 2 admtools-0.4.0/admtools/R/get_time.R | 2 admtools-0.4.0/admtools/R/is_adm.R | 9 - admtools-0.4.0/admtools/R/is_destructive.R | 2 admtools-0.4.0/admtools/R/merge_adm_to_multiadm.R | 8 admtools-0.4.0/admtools/R/min_height.R | 2 admtools-0.4.0/admtools/R/plot.adm.R | 2 admtools-0.4.0/admtools/R/plot.stratlist.R | 2 admtools-0.4.0/admtools/R/sed_rate_t.R | 2 admtools-0.4.0/admtools/R/strat_to_time.numeric.R | 2 admtools-0.4.0/admtools/R/strat_to_time.phylo.R | 6 admtools-0.4.0/admtools/R/strat_to_time.pre_paleoTS.R |only admtools-0.4.0/admtools/R/time_to_strat.R | 2 admtools-0.4.0/admtools/R/time_to_strat.numeric.R | 4 admtools-0.4.0/admtools/R/time_to_strat.phylo.R | 6 admtools-0.4.0/admtools/R/time_to_strat.pre_paleoTS.R |only admtools-0.4.0/admtools/R/tp_helpers.R | 6 admtools-0.4.0/admtools/R/tp_to_adm.R | 8 admtools-0.4.0/admtools/README.md | 8 admtools-0.4.0/admtools/data/CarboCATLite_data.rda |only admtools-0.4.0/admtools/inst/CITATION | 6 admtools-0.4.0/admtools/inst/WORDLIST |only admtools-0.4.0/admtools/inst/doc/adm_from_sedrate.html | 14 - admtools-0.4.0/admtools/inst/doc/adm_from_trace_cont.html | 12 - admtools-0.4.0/admtools/inst/doc/adm_plotting.Rmd | 4 admtools-0.4.0/admtools/inst/doc/adm_plotting.html | 8 admtools-0.4.0/admtools/inst/doc/admtools.Rmd | 8 admtools-0.4.0/admtools/inst/doc/admtools.html | 12 - admtools-0.4.0/admtools/inst/doc/admtools_doc.Rmd | 6 admtools-0.4.0/admtools/inst/doc/admtools_doc.html | 10 - admtools-0.4.0/admtools/man/anchor.Rd |only admtools-0.4.0/admtools/man/get_data_from_eTimeOpt.Rd | 2 admtools-0.4.0/admtools/man/get_time.Rd | 2 admtools-0.4.0/admtools/man/is_adm.Rd | 9 - admtools-0.4.0/admtools/man/is_destructive.Rd | 2 admtools-0.4.0/admtools/man/mean_adm.Rd | 3 admtools-0.4.0/admtools/man/median_adm.Rd | 3 admtools-0.4.0/admtools/man/min_height.Rd | 2 admtools-0.4.0/admtools/man/plot.adm.Rd | 2 admtools-0.4.0/admtools/man/plot.stratlist.Rd | 2 admtools-0.4.0/admtools/man/plot.timelist.Rd | 32 +-- admtools-0.4.0/admtools/man/quantile_adm.Rd | 5 admtools-0.4.0/admtools/man/sed_rate_t_fun.Rd | 2 admtools-0.4.0/admtools/man/strat_to_time.numeric.Rd | 2 admtools-0.4.0/admtools/man/strat_to_time.phylo.Rd | 6 admtools-0.4.0/admtools/man/time_to_strat.Rd | 2 admtools-0.4.0/admtools/man/time_to_strat.numeric.Rd | 4 admtools-0.4.0/admtools/man/time_to_strat.phylo.Rd | 6 admtools-0.4.0/admtools/man/tp_time_det.Rd | 4 admtools-0.4.0/admtools/man/tp_time_floating_scale.Rd | 2 admtools-0.4.0/admtools/man/tp_to_adm.Rd | 8 admtools-0.4.0/admtools/tests/spelling.R |only admtools-0.4.0/admtools/tests/testthat/test_anchor.R |only admtools-0.4.0/admtools/tests/testthat/test_is_sac.R |only admtools-0.4.0/admtools/vignettes/adm_plotting.Rmd | 4 admtools-0.4.0/admtools/vignettes/admtools.Rmd | 8 admtools-0.4.0/admtools/vignettes/admtools_doc.Rmd | 6 64 files changed, 277 insertions(+), 222 deletions(-)
Title: Fit, Simulate, and Diagnose Hierarchical Exponential-Family
Models for Big Networks
Description: A toolbox for analyzing and simulating large networks based on hierarchical exponential-family random graph models (HERGMs).'bigergm' implements the estimation for large networks efficiently building on the 'lighthergm' and 'hergm' packages. Moreover, the package contains tools for simulating networks with local dependence to assess the goodness-of-fit.
Author: Cornelius Fritz [aut, cre],
Shota Komatsu [aut],
Juan Nelson Martinez Dahbura [aut],
Takanori Nishida [aut],
Angelo Mele [aut],
Michael Schweinberger [aut]
Maintainer: Cornelius Fritz <corneliusfritz2010@gmail.com>
Diff between bigergm versions 1.2.1 dated 2024-06-13 and 1.2.2 dated 2024-10-03
DESCRIPTION | 8 +++--- MD5 | 18 +++++++-------- R/MM_wrapper.R | 6 ++--- R/simulate_bigergm.R | 7 ++++- build/vignette.rds |binary inst/python/infomap_R/infomap_py.py | 8 +++--- man/simulate.bigergm.Rd | 3 ++ tests/testthat/test-gof.R | 20 +++++++++-------- tests/testthat/test-vector_for_initialization_method.R | 2 - vignettes/bigergm.html | 14 +++++------ 10 files changed, 47 insertions(+), 39 deletions(-)
More information about r6qualitytools at CRAN
Permanent link
More information about conditionalProbNspades at CRAN
Permanent link
Title: Southwest Fisheries Science Center Aerial DAS Data Processing
Description: Process and summarize aerial survey 'DAS' data (AirDAS)
<https://swfsc-publications.fisheries.noaa.gov/publications/TM/SWFSC/NOAA-TM-NMFS-SWFSC-185.PDF>
collected using an aerial survey program from the
Southwest Fisheries Science Center (SWFSC)
<https://www.fisheries.noaa.gov/west-coast/science-data/california-current-marine-mammal-assessment-program>.
PDF files detailing the relevant AirDAS data formats are included in this package.
Author: Sam Woodman [aut, cre]
Maintainer: Sam Woodman <sam.woodman@noaa.gov>
Diff between swfscAirDAS versions 0.3.0 dated 2023-08-08 and 0.3.1 dated 2024-10-03
DESCRIPTION | 16 - MD5 | 32 +- NEWS.md | 7 R/airdas_check.R | 73 ++--- R/airdas_chop_equallength.R | 8 R/airdas_format_pdf.R | 8 R/swfscAirDAS-package.R | 5 README.md | 29 -- build/vignette.rds |binary inst/doc/swfscAirDAS.R | 2 inst/doc/swfscAirDAS.Rmd | 2 inst/doc/swfscAirDAS.html | 524 ++++++++++++++++++++--------------------- man/airdas_check.Rd | 63 ++-- man/airdas_chop_equallength.Rd | 8 man/airdas_format_pdf.Rd | 8 man/swfscAirDAS-package.Rd | 2 vignettes/swfscAirDAS.Rmd | 2 17 files changed, 393 insertions(+), 396 deletions(-)
Title: Cite 'R' Packages on the Fly in 'R Markdown' and 'Quarto'
Description: References and cites 'R' and 'R' packages on the fly in 'R
Markdown' and 'Quarto'. 'pakret' provides a minimalistic API that
generates preformatted citations of 'R' and 'R' packages, and adds
their reference to a '.bib' file directly from within your document.
Author: Arnaud Gallou [aut, cre, cph]
Maintainer: Arnaud Gallou <arangacas@gmail.com>
Diff between pakret versions 0.1.0 dated 2024-09-02 and 0.2.0 dated 2024-10-03
DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++------------- NEWS.md | 6 ++++++ R/checkers.R | 16 ++++++++++------ R/pakret.R | 31 +++++++++++++++++++------------ R/pkrt-list.R | 12 +++++++----- R/pkrt-set.R | 2 +- R/pkrt.R | 2 +- R/utils-local.R | 6 +++--- R/zzz.R | 1 + README.md | 30 ++++++++++++++---------------- man/pkrt.Rd | 2 +- tests/testthat/test-pkrt-list.R | 6 +++--- tests/testthat/test-pkrt.R | 13 ++++++++----- 14 files changed, 91 insertions(+), 70 deletions(-)
Title: Euclidean Climatch Algorithm
Description: An interface for performing climate matching using the Euclidean "Climatch" algorithm. Functions provide a vector of climatch scores (0-10) for each location (i.e., grid cell) within the recipient region, the percent of climatch scores >= a threshold value, and mean climatch score. Tools for parallelization and visualizations are also provided. Note that the floor function that rounds the climatch score down to the nearest integer has been removed in this implementation and the “Climatch” algorithm, also referred to as the “Climate” algorithm, is described in: Crombie, J., Brown, L., Lizzio, J., & Hood, G. (2008). “Climatch user manual”. The method for the percent score is described in: Howeth, J.G., Gantz, C.A., Angermeier, P.L., Frimpong, E.A., Hoff, M.H., Keller, R.P., Mandrak, N.E., Marchetti, M.P., Olden, J.D., Romagosa, C.M., and Lodge, D.M. (2016). <doi:10.1111/ddi.12391>.
Author: Justin A. G. Hubbard [aut, cre]
,
D. Andrew R. Drake [aut],
Nicholas E. Mandrak [aut]
Maintainer: Justin A. G. Hubbard <justin.hubbard@mail.utoronto.ca>
Diff between Euclimatch versions 1.0.1 dated 2023-09-24 and 1.0.2 dated 2024-10-03
DESCRIPTION | 9 +++++---- MD5 | 8 ++++---- R/climatch_par.R | 2 +- README.md | 19 +++++++++---------- inst/CITATION | 5 +++-- 5 files changed, 22 insertions(+), 21 deletions(-)
Title: Meteorological Data Processing
Description: Set of tools aimed at processing meteorological data, converting hourly recorded data to daily, monthly and annual data.
Author: Wagner Martins dos Santos [aut, cre]
,
Edimir Xavier Leal Ferraz [aut]
,
Lady Daiane Costa de Sousa Martins [aut]
Maintainer: Wagner Martins dos Santos <wagnnerms97@gmail.com>
Diff between DataMetProcess versions 1.0.2 dated 2024-06-19 and 1.0.3 dated 2024-10-03
DESCRIPTION | 8 MD5 | 11 R/calculateDMY.R | 4 build/vignette.rds |binary inst/DataMetProcess_Shiny/partitions/server_partitions/serverProcess.R | 1 inst/DataMetProcess_Shiny/rsconnect |only inst/doc/DataMetProcess-vignette.html | 224 +++++----- 7 files changed, 125 insertions(+), 123 deletions(-)
More information about DataMetProcess at CRAN
Permanent link
Title: Conjunctive Analysis of Case Configurations
Description: A set of functions to conduct Conjunctive Analysis of Case Configurations (CACC) as described in Miethe, Hart, and Regoeczi (2008) <doi:10.1007/s10940-008-9044-8>, and identify and quantify situational clustering in dominant case configurations as described in Hart (2019) <doi:10.1177/0011128719866123>. Initially conceived as an exploratory technique for multivariate analysis of categorical data, CACC has developed to include formal statistical tests that can be applied in a wide variety of contexts. This technique allows examining composite profiles of different units of analysis in an alternative way to variable-oriented methods.
Author: Asier Moneva [aut, cre] ,
Miriam Esteve [aut],
Timothy C. Hart [aut]
Maintainer: Asier Moneva <amoneva@nscr.nl>
Diff between cacc versions 0.1.0 dated 2022-10-28 and 0.1.1 dated 2024-10-03
DESCRIPTION | 10 +- MD5 | 28 +++--- NEWS.md | 9 ++ R/cacc.R | 140 ++++++++++++++++---------------- R/cluster_sci.R | 98 +++++++++++------------ R/cluster_xsq.R | 82 +++++++++---------- R/data.R | 42 ++++----- R/main_effect.R | 142 ++++++++++++++++----------------- R/plot_effect.R | 170 ++++++++++++++++++++-------------------- R/plot_sci.R | 134 +++++++++++++++---------------- README.md | 103 +++++++++++++----------- inst/CITATION | 21 ++-- man/figures/README-effect-1.png |binary man/figures/README-sci-1.png |binary man/onharassment.Rd | 66 +++++++-------- 15 files changed, 532 insertions(+), 513 deletions(-)
Title: Estimation of Fuzzy Poverty Measures
Description: Estimates fuzzy measures of poverty and deprivation. It also estimates the sampling variance of these measures using bootstrap or jackknife repeated replications.
Author: Federico Crescenzi [aut, cre] ,
Lorenzo Mori [aut] ,
Gianni Betti [ctb]
Maintainer: Federico Crescenzi <federico.crescenzi@unitus.it>
Diff between FuzzyPovertyR versions 3.0.0 dated 2024-08-19 and 3.0.1 dated 2024-10-03
FuzzyPovertyR-3.0.0/FuzzyPovertyR/man/fm_mu.Rd |only FuzzyPovertyR-3.0.0/FuzzyPovertyR/man/fm_objective.Rd |only FuzzyPovertyR-3.0.1/FuzzyPovertyR/DESCRIPTION | 6 FuzzyPovertyR-3.0.1/FuzzyPovertyR/MD5 | 20 - FuzzyPovertyR-3.0.1/FuzzyPovertyR/R/eq_predicate.R | 132 ++++++---- FuzzyPovertyR-3.0.1/FuzzyPovertyR/R/fm_construct.R | 4 FuzzyPovertyR-3.0.1/FuzzyPovertyR/R/fm_mu.R | 20 - FuzzyPovertyR-3.0.1/FuzzyPovertyR/R/fm_objective.R | 22 - FuzzyPovertyR-3.0.1/FuzzyPovertyR/build/vignette.rds |binary FuzzyPovertyR-3.0.1/FuzzyPovertyR/inst/doc/FuzzyPovertyR.html | 32 +- FuzzyPovertyR-3.0.1/FuzzyPovertyR/man/eq_predicate.Rd | 45 +-- FuzzyPovertyR-3.0.1/FuzzyPovertyR/man/fm_construct.Rd | 4 12 files changed, 164 insertions(+), 121 deletions(-)
Title: Regularized Linear Modeling with Tidy Data
Description: An extension to the 'R' tidy data environment for automated machine learning. The package allows fitting and cross validation of linear regression and classification algorithms on grouped data.
Author: Johann Pfitzinger [aut, cre]
Maintainer: Johann Pfitzinger <johann.pfitzinger@gmail.com>
Diff between tidyfit versions 0.7.1 dated 2024-03-23 and 0.7.2 dated 2024-10-03
DESCRIPTION | 20 ++-- MD5 | 65 +++++++-------- NEWS.md | 10 ++ R/check_explain_method.R | 1 R/check_method.R | 16 ++- R/check_package_name.R | 1 R/coef_methods.R | 11 -- R/explain.R | 4 R/explain_methods.R | 9 +- R/fit.bma.R | 43 +++++++++ R/fit.group_lasso.R |only R/fit.quantile.R | 7 - R/fit.quantile_rf.R | 4 R/fitted_methods.R | 2 R/m.R | 4 R/model_definition.R | 32 ++++++- R/predict_methods.R | 19 ---- R/utils.R | 3 README.md | 23 ++++- inst/doc/Accessing_Fitted_Model_Objects.html | 8 - inst/doc/Bootstrapping_Confidence_Intervals.html | 4 inst/doc/Feature_Selection.html | 4 inst/doc/Flowchart.html | 2 inst/doc/Multinomial_Classification.html | 4 inst/doc/Predicting_Boston_House_Prices.html | 10 +- inst/doc/Rolling_Window_Time_Series_Regression.html | 4 inst/doc/Time-varying_parameters_vs_rolling_windows.html | 4 man/dot-fit.group_lasso.Rd |only man/explain.Rd | 4 man/figures/README-unnamed-chunk-14-1.png |binary man/m.Rd | 4 tests/testthat/test-group_lasso.R |only tests/testthat/test-quantile_rf.R | 2 tests/testthat/test-rf.R | 4 tests/testthat/test-svm.R | 6 - 35 files changed, 200 insertions(+), 134 deletions(-)
Title: Mediterranean Landscape Simulation
Description: Simulate forest hydrology, forest function and dynamics over landscapes [De Caceres et al. (2015) <doi:10.1016/j.agrformet.2015.06.012>]. Parallelization is allowed in several simulation functions and simulations may be conducted including spatial processes such as lateral water transfer and seed dispersal.
Author: Miquel De Caceres [aut, cre],
Aitor Ameztegui [aut] ,
Maria Gonzalez [aut] ,
Nuria Aquilue [aut],
Daniel Caviedes-Voullieme [aut],
Mario Morales-Hernandez [aut],
Mario Beltran [ctb],
Rodrigo Balaguer-Romano [ctb] ,
Roberto Molowny-Horas [ctb]
Maintainer: Miquel De Caceres <miquelcaceres@gmail.com>
Diff between medfateland versions 2.4.5 dated 2024-07-24 and 2.4.6 dated 2024-10-03
DESCRIPTION | 8 +- MD5 | 28 ++++--- R/add_soilgrids.R | 93 -------------------------- R/add_topography.R | 46 ------------ R/check_inputs.R |only R/dispersal.R | 4 - R/impute_forests.R | 85 ----------------------- R/model_land.R | 18 +++-- R/parse_forestable.R | 125 ++++++++++++++++++++++++++--------- man/add_topography.Rd | 10 -- man/check_inputs.Rd |only man/forest_parametrization.Rd | 6 - man/parse_forestable.Rd | 11 ++- man/soil_parametrization.Rd | 15 ---- tests/testthat/test-checks.R |only tests/testthat/test_initialisation.R |only tests/testthat/test_land.R | 30 +++++++- 17 files changed, 169 insertions(+), 310 deletions(-)
Title: Wrapper for the 'AT' Protocol Behind 'Bluesky'
Description: Wraps the 'AT' Protocol (Authenticated Transfer Protocol) behind
'Bluesky' <https://bsky.social>. Functions can be used for, among others,
retrieving posts and followers from the network or posting content.
Author: Johannes B. Gruber [aut, cre] ,
Benjamin Guinaudeau [aut, ctb]
,
Fabio Votta [aut, ctb]
Maintainer: Johannes B. Gruber <JohannesB.Gruber@gmail.com>
Diff between atrrr versions 0.0.3 dated 2024-03-05 and 0.0.4 dated 2024-10-03
atrrr-0.0.3/atrrr/tests/testthat/recorded_responses/app.bsky.feed.getActorFeeds_76b86.rds |only atrrr-0.0.3/atrrr/tests/testthat/recorded_responses/app.bsky.feed.getAuthorFeed_76b86.rds |only atrrr-0.0.3/atrrr/vignettes/figures/unnamed-chunk-10-1.png |only atrrr-0.0.3/atrrr/vignettes/figures/unnamed-chunk-12-1.png |only atrrr-0.0.3/atrrr/vignettes/figures/unnamed-chunk-19-1.png |only atrrr-0.0.3/atrrr/vignettes/figures/unnamed-chunk-20-1.png |only atrrr-0.0.3/atrrr/vignettes/figures/unnamed-chunk-44-1.png |only atrrr-0.0.4/atrrr/DESCRIPTION | 8 atrrr-0.0.4/atrrr/MD5 | 111 +- atrrr-0.0.4/atrrr/NEWS.md | 8 atrrr-0.0.4/atrrr/R/convert.r | 3 atrrr-0.0.4/atrrr/R/feed.r | 23 atrrr-0.0.4/atrrr/R/parse.r | 5 atrrr-0.0.4/atrrr/R/utils.r | 10 atrrr-0.0.4/atrrr/README.md | 1 atrrr-0.0.4/atrrr/build/vignette.rds |binary atrrr-0.0.4/atrrr/inst/doc/Basic_Usage.Rmd | 331 ++++--- atrrr-0.0.4/atrrr/inst/doc/Basic_Usage.html | 454 ++++++---- atrrr-0.0.4/atrrr/inst/doc/Feed_Analysis.Rmd | 10 atrrr-0.0.4/atrrr/inst/doc/Feed_Analysis.html | 6 atrrr-0.0.4/atrrr/inst/doc/Interactions.Rmd | 16 atrrr-0.0.4/atrrr/inst/doc/Interactions.html | 4 atrrr-0.0.4/atrrr/inst/doc/Networks.Rmd | 16 atrrr-0.0.4/atrrr/inst/doc/Networks.html | 4 atrrr-0.0.4/atrrr/man/get_feeds_created_by.Rd | 2 atrrr-0.0.4/atrrr/man/get_skeets_authored_by.Rd | 2 atrrr-0.0.4/atrrr/man/post.Rd | 15 atrrr-0.0.4/atrrr/tests/testthat/recorded_responses/app.bsky.actor.getProfiles_23a5a.rds |binary atrrr-0.0.4/atrrr/tests/testthat/recorded_responses/app.bsky.actor.getProfiles_63d49.rds |binary atrrr-0.0.4/atrrr/tests/testthat/recorded_responses/app.bsky.actor.getProfiles_a3350.rds |binary atrrr-0.0.4/atrrr/tests/testthat/recorded_responses/app.bsky.actor.getProfiles_a7fb6.rds |binary atrrr-0.0.4/atrrr/tests/testthat/recorded_responses/app.bsky.actor.getProfiles_c1f6f.rds |binary atrrr-0.0.4/atrrr/tests/testthat/recorded_responses/app.bsky.actor.getProfiles_f39c7.rds |binary atrrr-0.0.4/atrrr/tests/testthat/recorded_responses/app.bsky.actor.searchActors_275e3.rds |binary atrrr-0.0.4/atrrr/tests/testthat/recorded_responses/app.bsky.actor.searchActors_5a4e3.rds |binary atrrr-0.0.4/atrrr/tests/testthat/recorded_responses/app.bsky.actor.searchActors_87617.rds |binary atrrr-0.0.4/atrrr/tests/testthat/recorded_responses/app.bsky.feed.getActorFeeds_925c2.rds |only atrrr-0.0.4/atrrr/tests/testthat/recorded_responses/app.bsky.feed.getAuthorFeed_925c2.rds |only atrrr-0.0.4/atrrr/tests/testthat/recorded_responses/app.bsky.feed.getFeed_0bf27.rds |binary atrrr-0.0.4/atrrr/tests/testthat/recorded_responses/app.bsky.feed.getLikes_26bda.rds |binary atrrr-0.0.4/atrrr/tests/testthat/recorded_responses/app.bsky.feed.getLikes_95deb.rds |binary atrrr-0.0.4/atrrr/tests/testthat/recorded_responses/app.bsky.feed.getPostThread_72827.rds |binary atrrr-0.0.4/atrrr/tests/testthat/recorded_responses/app.bsky.feed.getPostThread_aa665.rds |binary atrrr-0.0.4/atrrr/tests/testthat/recorded_responses/app.bsky.feed.getRepostedBy_95deb.rds |binary atrrr-0.0.4/atrrr/tests/testthat/recorded_responses/app.bsky.feed.getTimeline_6340d.rds |binary atrrr-0.0.4/atrrr/tests/testthat/recorded_responses/app.bsky.feed.getTimeline_730cb.rds |binary atrrr-0.0.4/atrrr/tests/testthat/recorded_responses/app.bsky.feed.searchPosts_0e3ec.rds |binary atrrr-0.0.4/atrrr/tests/testthat/recorded_responses/app.bsky.feed.searchPosts_bb16d.rds |binary atrrr-0.0.4/atrrr/tests/testthat/recorded_responses/app.bsky.unspecced.getPopularFeedGenerators_8e00b.rds |binary atrrr-0.0.4/atrrr/tests/testthat/recorded_responses/com.atproto.identity.resolveHandle_c81f8.rds |binary atrrr-0.0.4/atrrr/tests/testthat/recorded_responses/com.atproto.server.createSession_a4fa7.rds |only atrrr-0.0.4/atrrr/tests/testthat/test-feed.R | 18 atrrr-0.0.4/atrrr/vignettes/Basic_Usage.Rmd | 331 ++++--- atrrr-0.0.4/atrrr/vignettes/Basic_Usage.Rmd.orig | 38 atrrr-0.0.4/atrrr/vignettes/Feed_Analysis.Rmd | 10 atrrr-0.0.4/atrrr/vignettes/Interactions.Rmd | 16 atrrr-0.0.4/atrrr/vignettes/Networks.Rmd | 16 atrrr-0.0.4/atrrr/vignettes/README.md | 3 atrrr-0.0.4/atrrr/vignettes/figures/unnamed-chunk-16-1.png |only atrrr-0.0.4/atrrr/vignettes/figures/unnamed-chunk-3-1.png |binary atrrr-0.0.4/atrrr/vignettes/figures/unnamed-chunk-4-1.png |binary atrrr-0.0.4/atrrr/vignettes/figures/unnamed-chunk-6-1.png |binary 62 files changed, 931 insertions(+), 530 deletions(-)
Title: Electric Vehicle Charging Sessions Simulation
Description: Simulation of Electric Vehicles charging sessions using
Gaussian models, together with time-series power demand calculations.
The simulation methodology is published in
Cañigueral et al. (2023, ISBN:0957-4174) <doi:10.1016/j.eswa.2023.120318>.
Author: Marc Canigueral [aut, cre]
Maintainer: Marc Canigueral <marc.canigueral@udg.edu>
Diff between evsim versions 1.5.0 dated 2024-04-11 and 1.6.0 dated 2024-10-03
DESCRIPTION | 8 +- MD5 | 36 ++++----- NAMESPACE | 1 NEWS.md | 12 +++ R/charging_infrastructure.R | 14 +-- R/demand.R | 104 ++++++++++++++++++-------- R/evmodel.R | 2 R/simulation.R | 59 ++++++++++---- inst |only man/add_charging_infrastructure.Rd | 3 man/estimate_connection.Rd | 12 +-- man/estimate_energy.Rd | 15 ++- man/expand_sessions.Rd | 2 man/get_demand.Rd | 11 -- man/get_occupancy.Rd | 17 +--- man/is_aligned.Rd |only man/plot_occupancy_duration_curve.Rd | 6 - man/plot_ts.Rd | 29 ++++++- man/simulate_sessions.Rd | 5 + tests/testthat/test-charging_infrastructure.R | 3 20 files changed, 220 insertions(+), 119 deletions(-)
Title: REDCap Castellated Data Handling
Description: Originally forked from the R part of 'REDCapRITS' by Paul Egeler.
See <https://github.com/pegeler/REDCapRITS>.
'REDCap' database casting and handling of castellated data when using
repeated instruments and longitudinal projects. Keeps a focused data export
approach, by allowing to only export required data from the database.
'REDCap' (Research Electronic Data Capture) is a secure, web-based software
platform designed to support data capture for research studies, providing
1) an intuitive interface for validated data capture; 2) audit trails for
tracking data manipulation and export procedures; 3) automated export
procedures for seamless data downloads to common statistical packages; and
4) procedures for data integration and interoperability with external
sources (Harris et al (2009) <doi:10.1016/j.jbi.2008.08.010>;
Harris et al (2019) <doi:10.1016/j.jbi.2019.103208>).
Author: Andreas Gammelgaard Damsbo [aut, cre]
,
Paul Egeler [aut]
Maintainer: Andreas Gammelgaard Damsbo <agdamsbo@clin.au.dk>
Diff between REDCapCAST versions 24.6.1 dated 2024-06-07 and 24.10.3 dated 2024-10-03
REDCapCAST-24.10.3/REDCapCAST/DESCRIPTION | 16 REDCapCAST-24.10.3/REDCapCAST/MD5 | 29 REDCapCAST-24.10.3/REDCapCAST/NAMESPACE | 1 REDCapCAST-24.10.3/REDCapCAST/NEWS.md | 10 REDCapCAST-24.10.3/REDCapCAST/R/REDCapCAST-package.R |only REDCapCAST-24.10.3/REDCapCAST/README.md | 5 REDCapCAST-24.10.3/REDCapCAST/build/partial.rdb |only REDCapCAST-24.10.3/REDCapCAST/build/vignette.rds |binary REDCapCAST-24.10.3/REDCapCAST/inst/WORDLIST | 4 REDCapCAST-24.10.3/REDCapCAST/inst/doc/Database-creation.html | 226 ++-- REDCapCAST-24.10.3/REDCapCAST/inst/doc/Introduction.html | 226 ++-- REDCapCAST-24.10.3/REDCapCAST/man/REDCapCAST-package.Rd |only REDCapCAST-24.10.3/REDCapCAST/tests/testthat/test-API.R | 168 +++ REDCapCAST-24.10.3/REDCapCAST/tests/testthat/test-csv-exports.R | 509 +++++++++- REDCapCAST-24.10.3/REDCapCAST/tests/testthat/test-longitudinal.R | 184 +++ REDCapCAST-24.10.3/REDCapCAST/tests/testthat/test-primary-table-name.R | 347 ++++++ REDCapCAST-24.6.1/REDCapCAST/tests/spelling.R |only REDCapCAST-24.6.1/REDCapCAST/tests/spelling.Rout.save |only 18 files changed, 1474 insertions(+), 251 deletions(-)
Title: Mitigating Spatial Bias Through Geographical Complexity
Description: The geographical complexity of individual variables can be characterized by the differences in local attribute variables, while the common geographical complexity of multiple variables can be represented by fluctuations in the similarity of vectors composed of multiple variables. In spatial regression tasks, the goodness of fit can be improved by incorporating a geographical complexity representation vector during modeling, using a geographical complexity-weighted spatial weight matrix, or employing local geographical complexity kernel density. Similarly, in spatial sampling tasks, samples can be selected more effectively by using a method that weights based on geographical complexity. By optimizing performance in spatial regression and spatial sampling tasks, the spatial bias of the model can be effectively reduced.
Author: Wenbo Lv [aut, cre, cph] ,
Yongze Song [aut, ths]
Maintainer: Wenbo Lv <lyu.geosocial@gmail.com>
Diff between geocomplexity versions 0.1.0 dated 2024-09-24 and 0.2.0 dated 2024-10-03
geocomplexity-0.1.0/geocomplexity/R/moranI_test.R |only geocomplexity-0.1.0/geocomplexity/man/moran_test.Rd |only geocomplexity-0.1.0/geocomplexity/src/GlobalMoranI_Test.cpp |only geocomplexity-0.1.0/geocomplexity/src/MoranI_Helper.cpp |only geocomplexity-0.2.0/geocomplexity/DESCRIPTION | 12 geocomplexity-0.2.0/geocomplexity/MD5 | 48 - geocomplexity-0.2.0/geocomplexity/NAMESPACE | 2 geocomplexity-0.2.0/geocomplexity/NEWS.md | 20 geocomplexity-0.2.0/geocomplexity/R/RcppExports.R | 8 geocomplexity-0.2.0/geocomplexity/R/geocd_raster.R | 2 geocomplexity-0.2.0/geocomplexity/R/geocd_vector.R | 178 ++--- geocomplexity-0.2.0/geocomplexity/R/geocs_raster.R | 2 geocomplexity-0.2.0/geocomplexity/R/geocs_vector.R | 134 ++-- geocomplexity-0.2.0/geocomplexity/R/gwr_geoc.R | 218 +++--- geocomplexity-0.2.0/geocomplexity/README.md | 4 geocomplexity-0.2.0/geocomplexity/inst/doc/gca.html | 2 geocomplexity-0.2.0/geocomplexity/inst/doc/gcc.Rmd | 390 ++++++------ geocomplexity-0.2.0/geocomplexity/inst/doc/gcc.html | 6 geocomplexity-0.2.0/geocomplexity/man/geocd_raster.Rd | 2 geocomplexity-0.2.0/geocomplexity/man/geocd_vector.Rd | 2 geocomplexity-0.2.0/geocomplexity/man/geocs_raster.Rd | 2 geocomplexity-0.2.0/geocomplexity/man/geocs_vector.Rd | 2 geocomplexity-0.2.0/geocomplexity/man/gwr_geoc.Rd | 6 geocomplexity-0.2.0/geocomplexity/src/RcppExports.cpp | 27 geocomplexity-0.2.0/geocomplexity/vignettes/gca.Rmd.orig | 216 +++--- geocomplexity-0.2.0/geocomplexity/vignettes/gcc.Rmd | 390 ++++++------ geocomplexity-0.2.0/geocomplexity/vignettes/gcc.Rmd.orig | 308 ++++----- 27 files changed, 973 insertions(+), 1008 deletions(-)