Title: Extended Batch Marking Models
Description: A system for batch-marking data analysis to estimate survival probabilities, capture probabilities, and enumerate the population abundance for both marked and unmarked individuals. The estimation of only marked individuals can be achieved through the batchMarkOptim() function. Similarly, the combined marked and unmarked can be achieved through the batchMarkUnmarkOptim() function. The algorithm was also implemented for the hidden Markov model encapsulated in batchMarkUnmarkOptim() to estimate the abundance of both marked and unmarked individuals in the population. The package is based on the paper: "Hidden Markov Models for Extended Batch Data" of Cowen et al. (2017) <doi:10.1111/biom.12701>.
Author: Kehinde Olobatuyi [aut, cre] ,
Simon Johns [aut],
Matthew RP Parker [aut] ,
Steve Hof [aut],
Laura LE Cowen [aut]
Maintainer: Kehinde Olobatuyi <olobatuyikenny@uvic.ca>
Diff between extBatchMarking versions 1.0.1 dated 2024-01-10 and 1.1.0 dated 2024-10-04
DESCRIPTION | 14 MD5 | 40 + NAMESPACE | 10 R/RcppExports.R | 4 R/batchMark.R | 377 +++++++++++++---- R/batchMarkfun.R | 500 ++++++++++++++++------- README.md | 752 ++++++++++++++++++++++++++++------- build/partial.rdb |binary man/batchLL.Rd | 4 man/batchMarkHmmLL.Rd | 22 - man/batchMarkOptim.Rd | 55 +- man/batchMarkUnmarkHmmLL.Rd | 16 man/batchMarkUnmarkOptim.Rd | 35 - man/extBatchMarking-package.Rd | 4 man/figures |only man/plot.batchMarkOptim.Rd |only man/plot.batchMarkUnmarkOptim.Rd |only man/print.batchMarkOptim.Rd |only man/print.batchMarkUnmarkOptim.Rd |only src/RcppExports.cpp | 9 src/transProb.cpp | 4 tests/testthat/testextBatchMarking.R | 28 - 22 files changed, 1385 insertions(+), 489 deletions(-)
More information about extBatchMarking at CRAN
Permanent link
Title: Extract and Tidy Canadian 'Hydrometric' Data
Description: Provides functions to access historical and real-time national 'hydrometric'
data from Water Survey of Canada data sources (<https://dd.weather.gc.ca/hydrometric/csv/> and
<https://collaboration.cmc.ec.gc.ca/cmc/hydrometrics/www/>) and then applies tidy data principles.
Author: Sam Albers [aut, cre] ,
David Hutchinson [ctb],
Dewey Dunnington [ctb],
Ryan Whaley [ctb],
Province of British Columbia [cph],
Government of Canada [dtc],
Luke Winslow [rev] ,
Laura DeCicco [rev]
Maintainer: Sam Albers <sam.albers@gmail.com>
Diff between tidyhydat versions 0.6.1 dated 2024-01-11 and 0.7.0 dated 2024-10-04
tidyhydat-0.6.1/tidyhydat/man/reexports.Rd |only tidyhydat-0.7.0/tidyhydat/DESCRIPTION | 12 tidyhydat-0.7.0/tidyhydat/MD5 | 144 +++--- tidyhydat-0.7.0/tidyhydat/NAMESPACE | 2 tidyhydat-0.7.0/tidyhydat/NEWS.md | 6 tidyhydat-0.7.0/tidyhydat/R/download.R | 49 +- tidyhydat-0.7.0/tidyhydat/R/hy.R | 10 tidyhydat-0.7.0/tidyhydat/R/hy_annual_instant_peaks.R | 4 tidyhydat-0.7.0/tidyhydat/R/hy_annual_stats.R | 10 tidyhydat-0.7.0/tidyhydat/R/hy_db.R | 4 tidyhydat-0.7.0/tidyhydat/R/hy_stations.R | 8 tidyhydat-0.7.0/tidyhydat/R/realtime-webservice.R | 72 +-- tidyhydat-0.7.0/tidyhydat/R/realtime.R | 26 - tidyhydat-0.7.0/tidyhydat/R/realtime_plot.R | 4 tidyhydat-0.7.0/tidyhydat/R/utils-realtime.R | 163 ++----- tidyhydat-0.7.0/tidyhydat/R/utils-search.R | 12 tidyhydat-0.7.0/tidyhydat/R/utils.R | 47 +- tidyhydat-0.7.0/tidyhydat/R/zzz.R | 7 tidyhydat-0.7.0/tidyhydat/README.md | 71 +-- tidyhydat-0.7.0/tidyhydat/build/partial.rdb |binary tidyhydat-0.7.0/tidyhydat/build/vignette.rds |binary tidyhydat-0.7.0/tidyhydat/data/allstations.rda |binary tidyhydat-0.7.0/tidyhydat/data/hy_data_symbols.rda |binary tidyhydat-0.7.0/tidyhydat/data/hy_data_types.rda |binary tidyhydat-0.7.0/tidyhydat/inst/doc/tidyhydat_an_introduction.Rmd | 133 ++--- tidyhydat-0.7.0/tidyhydat/inst/doc/tidyhydat_an_introduction.html | 179 +++---- tidyhydat-0.7.0/tidyhydat/inst/doc/tidyhydat_example_analysis.Rmd | 152 +++--- tidyhydat-0.7.0/tidyhydat/inst/doc/tidyhydat_example_analysis.html | 232 ++++------ tidyhydat-0.7.0/tidyhydat/inst/doc/tidyhydat_hydat_db.Rmd | 43 - tidyhydat-0.7.0/tidyhydat/inst/doc/tidyhydat_hydat_db.html | 103 +--- tidyhydat-0.7.0/tidyhydat/man/figures/README-unnamed-chunk-8-1.png |binary tidyhydat-0.7.0/tidyhydat/man/figures/README-unnamed-chunk-9-1.png |binary tidyhydat-0.7.0/tidyhydat/man/hy_agency_list.Rd | 4 tidyhydat-0.7.0/tidyhydat/man/hy_annual_instant_peaks.Rd | 4 tidyhydat-0.7.0/tidyhydat/man/hy_annual_stats.Rd | 4 tidyhydat-0.7.0/tidyhydat/man/hy_daily.Rd | 2 tidyhydat-0.7.0/tidyhydat/man/hy_daily_flows.Rd | 4 tidyhydat-0.7.0/tidyhydat/man/hy_daily_levels.Rd | 4 tidyhydat-0.7.0/tidyhydat/man/hy_data_symbols.Rd | 4 tidyhydat-0.7.0/tidyhydat/man/hy_data_types.Rd | 4 tidyhydat-0.7.0/tidyhydat/man/hy_datum_list.Rd | 4 tidyhydat-0.7.0/tidyhydat/man/hy_monthly_flows.Rd | 4 tidyhydat-0.7.0/tidyhydat/man/hy_monthly_levels.Rd | 4 tidyhydat-0.7.0/tidyhydat/man/hy_reg_office_list.Rd | 4 tidyhydat-0.7.0/tidyhydat/man/hy_sed_daily_loads.Rd | 4 tidyhydat-0.7.0/tidyhydat/man/hy_sed_daily_suscon.Rd | 4 tidyhydat-0.7.0/tidyhydat/man/hy_sed_monthly_loads.Rd | 4 tidyhydat-0.7.0/tidyhydat/man/hy_sed_monthly_suscon.Rd | 4 tidyhydat-0.7.0/tidyhydat/man/hy_sed_samples.Rd | 2 tidyhydat-0.7.0/tidyhydat/man/hy_sed_samples_psd.Rd | 2 tidyhydat-0.7.0/tidyhydat/man/hy_src.Rd | 4 tidyhydat-0.7.0/tidyhydat/man/hy_stations.Rd | 4 tidyhydat-0.7.0/tidyhydat/man/hy_stn_data_coll.Rd | 4 tidyhydat-0.7.0/tidyhydat/man/hy_stn_data_range.Rd | 4 tidyhydat-0.7.0/tidyhydat/man/hy_stn_op_schedule.Rd | 4 tidyhydat-0.7.0/tidyhydat/man/hy_stn_regulation.Rd | 4 tidyhydat-0.7.0/tidyhydat/man/hy_version.Rd | 4 tidyhydat-0.7.0/tidyhydat/man/pull_station_number.Rd | 4 tidyhydat-0.7.0/tidyhydat/man/realtime_add_local_datetime.Rd | 2 tidyhydat-0.7.0/tidyhydat/man/realtime_daily_mean.Rd | 2 tidyhydat-0.7.0/tidyhydat/tests/testthat/_snaps |only tidyhydat-0.7.0/tidyhydat/tests/testthat/test_download_realtime.R | 8 tidyhydat-0.7.0/tidyhydat/tests/testthat/test_realtime_add_local_datetime.R | 6 tidyhydat-0.7.0/tidyhydat/tests/testthat/test_station_choice.R | 6 tidyhydat-0.7.0/tidyhydat/tests/testthat/test_utils.R | 18 tidyhydat-0.7.0/tidyhydat/vignettes/tidyhydat_an_introduction.Rmd | 133 ++--- tidyhydat-0.7.0/tidyhydat/vignettes/tidyhydat_an_introduction.Rmd.orig | 16 tidyhydat-0.7.0/tidyhydat/vignettes/tidyhydat_example_analysis.Rmd | 152 +++--- tidyhydat-0.7.0/tidyhydat/vignettes/tidyhydat_example_analysis.Rmd.orig | 74 +-- tidyhydat-0.7.0/tidyhydat/vignettes/tidyhydat_hydat_db.Rmd | 43 - tidyhydat-0.7.0/tidyhydat/vignettes/tidyhydat_hydat_db.Rmd.orig | 4 tidyhydat-0.7.0/tidyhydat/vignettes/vignette-fig-old_rec-1.png |binary tidyhydat-0.7.0/tidyhydat/vignettes/vignette-fig-pcrtile_plt-1.png |binary tidyhydat-0.7.0/tidyhydat/vignettes/vignette-fig-unnamed-chunk-8-1.png |binary 74 files changed, 991 insertions(+), 1064 deletions(-)
Title: Elastic Functional Data Analysis
Description: Performs alignment, PCA, and modeling of multidimensional and
unidimensional functions using the square-root velocity framework
(Srivastava et al., 2011 <doi:10.48550/arXiv.1103.3817> and Tucker et al., 2014
<DOI:10.1016/j.csda.2012.12.001>). This framework allows for elastic
analysis of functional data through phase and amplitude separation.
Author: J. Derek Tucker [aut, cre] ,
Aymeric Stamm [ctb]
Maintainer: J. Derek Tucker <jdtuck@sandia.gov>
Diff between fdasrvf versions 2.3.2 dated 2024-08-19 and 2.3.3 dated 2024-10-04
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NEWS.md | 6 +++++- R/geometry.R | 11 ++++++++--- R/jointfPCA.R | 19 +++++++++++++------ R/multiple_align_functions.R | 12 +++++++++--- R/pair_align_functions.R | 6 +++--- README.md | 4 ++-- man/gam_to_h.Rd | 2 +- man/gam_to_v.Rd | 2 +- man/multiple_align_functions.Rd | 5 ++++- 11 files changed, 60 insertions(+), 35 deletions(-)
Title: Creates Bivariate Maps
Description: Contains functions mainly focused to plotting bivariate maps.
Author: Jose Hidasi-Neto [aut, cre]
Maintainer: Jose Hidasi-Neto <hidasineto@gmail.com>
Diff between bivariatemaps versions 1.3 dated 2024-03-17 and 1.7 dated 2024-10-04
DESCRIPTION | 11 ++++++----- MD5 | 20 ++++++++++++++++---- NAMESPACE | 6 ++++++ R/EcoEDGE.R |only R/GridFilter.R |only R/ancestree.R |only R/astRaRium.R |only R/betagrid.R |only R/bivariate.map.R | 24 ++++++++++++++++++++---- R/tempbetagrid.R |only man/EcoEDGE.Rd |only man/GridFilter.Rd |only man/ancestree.Rd |only man/astRaRium.Rd |only man/betagrid.Rd |only man/bivariate.map.Rd | 13 ++++++++++++- man/tempbetagrid.Rd |only 17 files changed, 60 insertions(+), 14 deletions(-)
Title: Tree-Based Varying Coefficient Regression for Generalized Linear
and Ordinal Mixed Models
Description: Recursive partitioning for varying coefficient generalized linear models and ordinal linear mixed models. Special features are coefficient-wise partitioning, non-varying coefficients and partitioning of time-varying variables in longitudinal regression. A description of a part of this package was published by Burgin and Ritschard (2017) <doi:10.18637/jss.v080.i06>.
Author: Reto Burgin [aut, cre] ,
Gilbert Ritschard [ctb]
Maintainer: Reto Burgin <rbuergin@gmx.ch>
Diff between vcrpart versions 1.0-5 dated 2024-05-11 and 1.0-6 dated 2024-10-04
DESCRIPTION | 8 ++--- MD5 | 14 ++++----- NEWS | 9 +++++ man/olmm-control.Rd | 2 - man/poverty.Rd | 6 +-- man/tvcm-plot.Rd | 4 +- man/tvcm.Rd | 4 +- src/olmm.c | 80 ++++++++++++++++++++++++++-------------------------- 8 files changed, 66 insertions(+), 61 deletions(-)
Title: Easily Create Presentation-Ready Display Tables
Description: Build display tables from tabular data with an easy-to-use
set of functions. With its progressive approach, we can construct
display tables with a cohesive set of table parts. Table values can be
formatted using any of the included formatting functions. Footnotes
and cell styles can be precisely added through a location targeting
system. The way in which 'gt' handles things for you means that you
don't often have to worry about the fine details.
Author: Richard Iannone [aut, cre] ,
Joe Cheng [aut],
Barret Schloerke [aut] ,
Ellis Hughes [aut] ,
Alexandra Lauer [aut] ,
JooYoung Seo [aut] ,
Ken Brevoort [aut] ,
Olivier Roy [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Richard Iannone <rich@posit.co>
Diff between gt versions 0.11.0 dated 2024-07-09 and 0.11.1 dated 2024-10-04
gt-0.11.0/gt/R/modify_columns.R |only gt-0.11.0/gt/R/utils_formatters.R |only gt-0.11.0/gt/R/utils_pipe.R |only gt-0.11.0/gt/man/pipe.Rd |only gt-0.11.0/gt/tests/testthat/_snaps/render_as_gtable.md |only gt-0.11.0/gt/tests/testthat/helper-gt_attr_expectations.R |only gt-0.11.0/gt/tests/testthat/test-conditional_fmt.R |only gt-0.11.0/gt/tests/testthat/test-l_conditional_fmt.R |only gt-0.11.0/gt/tests/testthat/test-r_table_parts.R |only gt-0.11.0/gt/tests/testthat/test-render_as_gtable.R |only gt-0.11.1/gt/DESCRIPTION | 21 gt-0.11.1/gt/MD5 | 411 - gt-0.11.1/gt/NAMESPACE | 7 gt-0.11.1/gt/NEWS.md | 84 gt-0.11.1/gt/R/build_data.R | 15 gt-0.11.1/gt/R/cols_add.R |only gt-0.11.1/gt/R/cols_align.R |only gt-0.11.1/gt/R/cols_align_decimal.R |only gt-0.11.1/gt/R/cols_hide.R |only gt-0.11.1/gt/R/cols_label.R |only gt-0.11.1/gt/R/cols_merge.R |only gt-0.11.1/gt/R/cols_move.R |only gt-0.11.1/gt/R/cols_units.R |only gt-0.11.1/gt/R/cols_width.R |only gt-0.11.1/gt/R/compile_scss.R | 2 gt-0.11.1/gt/R/data_color.R | 97 gt-0.11.1/gt/R/datasets.R | 187 gt-0.11.1/gt/R/dt_body.R | 4 gt-0.11.1/gt/R/dt_boxhead.R | 59 gt-0.11.1/gt/R/dt_cols_merge.R | 11 gt-0.11.1/gt/R/dt_footnotes.R | 4 gt-0.11.1/gt/R/dt_groups_rows.R | 6 gt-0.11.1/gt/R/dt_has_built.R | 7 gt-0.11.1/gt/R/dt_options.R | 20 gt-0.11.1/gt/R/dt_spanners.R | 6 gt-0.11.1/gt/R/dt_styles.R | 4 gt-0.11.1/gt/R/dt_summary.R | 24 gt-0.11.1/gt/R/export.R | 1056 --- gt-0.11.1/gt/R/extract.R |only gt-0.11.1/gt/R/fmt.R |only gt-0.11.1/gt/R/fmt_date_time.R |only gt-0.11.1/gt/R/fmt_number.R |only gt-0.11.1/gt/R/format_data.R | 4070 -------------- gt-0.11.1/gt/R/format_vec.R | 113 gt-0.11.1/gt/R/gt-package.R | 8 gt-0.11.1/gt/R/gt.R | 9 gt-0.11.1/gt/R/gt_group.R | 7 gt-0.11.1/gt/R/gt_preview.R | 1 gt-0.11.1/gt/R/gt_split.R | 1 gt-0.11.1/gt/R/gtsave.R |only gt-0.11.1/gt/R/helpers.R | 507 - gt-0.11.1/gt/R/image.R | 6 gt-0.11.1/gt/R/info_tables.R | 65 gt-0.11.1/gt/R/knitr-utils.R | 31 gt-0.11.1/gt/R/location_methods.R | 20 gt-0.11.1/gt/R/modify_rows.R | 14 gt-0.11.1/gt/R/nanoplot.R |only gt-0.11.1/gt/R/opts.R | 198 gt-0.11.1/gt/R/quarto.R |only gt-0.11.1/gt/R/reexports.R | 34 gt-0.11.1/gt/R/render_as_html.R | 2 gt-0.11.1/gt/R/render_as_i_html.R | 227 gt-0.11.1/gt/R/resolver.R | 74 gt-0.11.1/gt/R/rows_add.R | 1 gt-0.11.1/gt/R/shiny.R | 10 gt-0.11.1/gt/R/substitution.R | 232 gt-0.11.1/gt/R/summary_rows.R | 39 gt-0.11.1/gt/R/tab_create_modify.R | 2665 --------- gt-0.11.1/gt/R/tab_footnote.R |only gt-0.11.1/gt/R/tab_info.R | 36 gt-0.11.1/gt/R/tab_options.R |only gt-0.11.1/gt/R/tab_remove.R | 30 gt-0.11.1/gt/R/tab_style.R |only gt-0.11.1/gt/R/tab_style_body.R | 86 gt-0.11.1/gt/R/text_transform.R | 107 gt-0.11.1/gt/R/topics.R | 201 gt-0.11.1/gt/R/utils.R | 161 gt-0.11.1/gt/R/utils_color_contrast.R | 2 gt-0.11.1/gt/R/utils_environments.R | 4 gt-0.11.1/gt/R/utils_examples.R | 41 gt-0.11.1/gt/R/utils_general_str_formatting.R | 79 gt-0.11.1/gt/R/utils_plots.R | 46 gt-0.11.1/gt/R/utils_render_common.R | 60 gt-0.11.1/gt/R/utils_render_grid.R | 131 gt-0.11.1/gt/R/utils_render_html.R | 163 gt-0.11.1/gt/R/utils_render_latex.R | 298 - gt-0.11.1/gt/R/utils_render_rtf.R | 71 gt-0.11.1/gt/R/utils_render_xml.R | 168 gt-0.11.1/gt/R/utils_units.R | 13 gt-0.11.1/gt/R/z_utils_render_footnotes.R | 259 gt-0.11.1/gt/R/zzz.R | 9 gt-0.11.1/gt/data/countrypops.rda |binary gt-0.11.1/gt/data/metro.rda |binary gt-0.11.1/gt/man/as_gtable.Rd | 2 gt-0.11.1/gt/man/cells_body.Rd | 7 gt-0.11.1/gt/man/cells_column_labels.Rd | 2 gt-0.11.1/gt/man/cells_column_spanners.Rd | 49 gt-0.11.1/gt/man/cells_grand_summary.Rd | 7 gt-0.11.1/gt/man/cells_stub.Rd | 6 gt-0.11.1/gt/man/cells_stub_grand_summary.Rd | 4 gt-0.11.1/gt/man/cells_summary.Rd | 7 gt-0.11.1/gt/man/cols_add.Rd | 2 gt-0.11.1/gt/man/cols_align.Rd | 13 gt-0.11.1/gt/man/cols_align_decimal.Rd | 2 gt-0.11.1/gt/man/cols_hide.Rd | 14 gt-0.11.1/gt/man/cols_label.Rd | 20 gt-0.11.1/gt/man/cols_label_with.Rd | 6 gt-0.11.1/gt/man/cols_merge.Rd | 2 gt-0.11.1/gt/man/cols_merge_n_pct.Rd | 15 gt-0.11.1/gt/man/cols_merge_range.Rd | 2 gt-0.11.1/gt/man/cols_merge_uncert.Rd | 4 gt-0.11.1/gt/man/cols_move.Rd | 8 gt-0.11.1/gt/man/cols_move_to_end.Rd | 14 gt-0.11.1/gt/man/cols_move_to_start.Rd | 14 gt-0.11.1/gt/man/cols_nanoplot.Rd | 22 gt-0.11.1/gt/man/cols_unhide.Rd | 8 gt-0.11.1/gt/man/cols_units.Rd | 2 gt-0.11.1/gt/man/cols_width.Rd | 2 gt-0.11.1/gt/man/constants.Rd | 20 gt-0.11.1/gt/man/countrypops.Rd | 25 gt-0.11.1/gt/man/data_color.Rd | 59 gt-0.11.1/gt/man/exibble.Rd | 23 gt-0.11.1/gt/man/extract_body.Rd | 120 gt-0.11.1/gt/man/extract_cells.Rd | 6 gt-0.11.1/gt/man/extract_summary.Rd | 2 gt-0.11.1/gt/man/films.Rd | 24 gt-0.11.1/gt/man/fmt.Rd | 59 gt-0.11.1/gt/man/fmt_auto.Rd | 45 gt-0.11.1/gt/man/fmt_bins.Rd | 45 gt-0.11.1/gt/man/fmt_bytes.Rd | 45 gt-0.11.1/gt/man/fmt_chem.Rd | 47 gt-0.11.1/gt/man/fmt_country.Rd | 47 gt-0.11.1/gt/man/fmt_currency.Rd | 45 gt-0.11.1/gt/man/fmt_date.Rd | 47 gt-0.11.1/gt/man/fmt_datetime.Rd | 47 gt-0.11.1/gt/man/fmt_duration.Rd | 62 gt-0.11.1/gt/man/fmt_email.Rd | 61 gt-0.11.1/gt/man/fmt_engineering.Rd | 45 gt-0.11.1/gt/man/fmt_flag.Rd | 47 gt-0.11.1/gt/man/fmt_fraction.Rd | 45 gt-0.11.1/gt/man/fmt_icon.Rd | 45 gt-0.11.1/gt/man/fmt_image.Rd | 45 gt-0.11.1/gt/man/fmt_index.Rd | 45 gt-0.11.1/gt/man/fmt_integer.Rd | 47 gt-0.11.1/gt/man/fmt_markdown.Rd | 45 gt-0.11.1/gt/man/fmt_missing.Rd | 4 gt-0.11.1/gt/man/fmt_number.Rd | 47 gt-0.11.1/gt/man/fmt_partsper.Rd | 45 gt-0.11.1/gt/man/fmt_passthrough.Rd | 45 gt-0.11.1/gt/man/fmt_percent.Rd | 49 gt-0.11.1/gt/man/fmt_roman.Rd | 45 gt-0.11.1/gt/man/fmt_scientific.Rd | 45 gt-0.11.1/gt/man/fmt_spelled_num.Rd | 56 gt-0.11.1/gt/man/fmt_tf.Rd | 47 gt-0.11.1/gt/man/fmt_time.Rd | 47 gt-0.11.1/gt/man/fmt_units.Rd | 45 gt-0.11.1/gt/man/fmt_url.Rd | 45 gt-0.11.1/gt/man/fmts.Rd |only gt-0.11.1/gt/man/gibraltar.Rd | 26 gt-0.11.1/gt/man/grand_summary_rows.Rd | 2 gt-0.11.1/gt/man/grp_options.Rd | 2 gt-0.11.1/gt/man/gt-options.Rd | 2 gt-0.11.1/gt/man/gt.Rd | 7 gt-0.11.1/gt/man/gt_output.Rd | 6 gt-0.11.1/gt/man/gtcars.Rd | 29 gt-0.11.1/gt/man/gtsave.Rd | 8 gt-0.11.1/gt/man/illness.Rd | 25 gt-0.11.1/gt/man/info_paletteer.Rd | 3 gt-0.11.1/gt/man/info_unit_conversions.Rd | 2 gt-0.11.1/gt/man/locale.Rd |only gt-0.11.1/gt/man/metro.Rd | 7 gt-0.11.1/gt/man/nanoplot_options.Rd | 6 gt-0.11.1/gt/man/nuclides.Rd | 45 gt-0.11.1/gt/man/opt_table_font.Rd | 25 gt-0.11.1/gt/man/peeps.Rd | 5 gt-0.11.1/gt/man/photolysis.Rd | 26 gt-0.11.1/gt/man/pizzaplace.Rd | 21 gt-0.11.1/gt/man/reactions.Rd | 55 gt-0.11.1/gt/man/reexports.Rd | 12 gt-0.11.1/gt/man/row_group.Rd | 2 gt-0.11.1/gt/man/row_group_order.Rd | 11 gt-0.11.1/gt/man/rows-columns.Rd |only gt-0.11.1/gt/man/rx_addv.Rd | 34 gt-0.11.1/gt/man/rx_adsl.Rd | 28 gt-0.11.1/gt/man/sp500.Rd | 21 gt-0.11.1/gt/man/sub_large_vals.Rd | 53 gt-0.11.1/gt/man/sub_missing.Rd | 45 gt-0.11.1/gt/man/sub_small_vals.Rd | 48 gt-0.11.1/gt/man/sub_values.Rd | 45 gt-0.11.1/gt/man/sub_zero.Rd | 45 gt-0.11.1/gt/man/summary_rows.Rd | 9 gt-0.11.1/gt/man/sza.Rd | 18 gt-0.11.1/gt/man/tab_caption.Rd | 2 gt-0.11.1/gt/man/tab_footnote.Rd | 10 gt-0.11.1/gt/man/tab_info.Rd | 7 gt-0.11.1/gt/man/tab_options.Rd | 22 gt-0.11.1/gt/man/tab_row_group.Rd | 5 gt-0.11.1/gt/man/tab_spanner.Rd | 7 gt-0.11.1/gt/man/tab_spanner_delim.Rd | 12 gt-0.11.1/gt/man/tab_stub_indent.Rd | 8 gt-0.11.1/gt/man/tab_stubhead.Rd | 3 gt-0.11.1/gt/man/tab_style.Rd | 10 gt-0.11.1/gt/man/tab_style_body.Rd | 49 gt-0.11.1/gt/man/text_case_match.Rd | 13 gt-0.11.1/gt/man/text_replace.Rd | 16 gt-0.11.1/gt/man/text_transform.Rd | 16 gt-0.11.1/gt/man/towny.Rd | 39 gt-0.11.1/gt/man/unit_conversion.Rd | 2 gt-0.11.1/gt/tests/testthat/Rplots.pdf |binary gt-0.11.1/gt/tests/testthat/_snaps/as_gtable.md |only gt-0.11.1/gt/tests/testthat/_snaps/as_latex.md | 109 gt-0.11.1/gt/tests/testthat/_snaps/cols_add.md |only gt-0.11.1/gt/tests/testthat/_snaps/extract_body.md |only gt-0.11.1/gt/tests/testthat/_snaps/utils_render_grid.md | 2 gt-0.11.1/gt/tests/testthat/helper-gt_object.R |only gt-0.11.1/gt/tests/testthat/helper.R | 152 gt-0.11.1/gt/tests/testthat/test-as_gtable.R |only gt-0.11.1/gt/tests/testthat/test-as_latex.R | 237 gt-0.11.1/gt/tests/testthat/test-cols_add.R |only gt-0.11.1/gt/tests/testthat/test-cols_align.R | 14 gt-0.11.1/gt/tests/testthat/test-cols_nanoplot.R |only gt-0.11.1/gt/tests/testthat/test-fmt.R |only gt-0.11.1/gt/tests/testthat/test-l_cols_align.R | 16 gt-0.11.1/gt/tests/testthat/test-l_cols_width.R |only gt-0.11.1/gt/tests/testthat/test-l_fmt.R |only gt-0.11.1/gt/tests/testthat/test-l_fmt_date_time.R | 9 gt-0.11.1/gt/tests/testthat/test-resolver.R | 2 gt-0.11.1/gt/tests/testthat/test-rtf_table_parts.R |only 228 files changed, 3769 insertions(+), 11937 deletions(-)
Title: Highest Quality GIF Encoder
Description: Multi-threaded GIF encoder written in Rust: <https://gif.ski/>.
Converts images to GIF animations using pngquant's efficient cross-frame
palettes and temporal dithering with thousands of colors per frame.
Author: Jeroen Ooms [aut, cre] ,
Kornel Lesinski [aut] ,
Authors of the dependency Rust crates [aut]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between gifski versions 1.12.0-2 dated 2023-08-12 and 1.32.0 dated 2024-10-04
DESCRIPTION | 10 MD5 | 29 +- NEWS | 4 configure | 24 +- configure.ucrt | 1 inst/AUTHORS | 98 +++------ src/Makevars | 2 src/Makevars.ucrt | 3 src/Makevars.win | 15 - src/myrustlib/Cargo.lock | 429 ++++++++++++++--------------------------- src/myrustlib/Cargo.toml | 2 src/myrustlib/gifski.h | 6 src/myrustlib/vendor-update.sh | 2 src/myrustlib/vendor.tar.xz |binary tools/rustarch.R |only tools/winlibs.R | 30 +- 16 files changed, 260 insertions(+), 395 deletions(-)
Title: CEU Mass Mediator RESTful API
Description: CEU (CEU San Pablo University) Mass Mediator is an on-line tool for aiding researchers in
performing metabolite annotation. 'cmmr' (CEU Mass Mediator RESTful API) allows
for programmatic access in R: batch search, batch advanced search, MS/MS (tandem mass spectrometry) search, etc.
For more information about the API Endpoint please go to <https://github.com/YaoxiangLi/cmmr>.
Author: Yaoxiang Li [aut, cre] ,
Alberto Gil de la Fuente [aut],
Charles Hinzman [aut],
Amrita Cheema [aut]
Maintainer: Yaoxiang Li <liyaoxiang@outlook.com>
Diff between cmmr versions 0.1.2 dated 2019-04-16 and 1.0.3 dated 2024-10-04
cmmr-0.1.2/cmmr/R/advanced_batch_search.R |only cmmr-0.1.2/cmmr/R/batch_search.R |only cmmr-0.1.2/cmmr/R/create_advanced_batch_body.R |only cmmr-0.1.2/cmmr/R/create_batch_body.R |only cmmr-0.1.2/cmmr/R/create_msms_body.R |only cmmr-0.1.2/cmmr/R/msms_search.R |only cmmr-1.0.3/cmmr/DESCRIPTION | 39 + cmmr-1.0.3/cmmr/MD5 | 32 - cmmr-1.0.3/cmmr/R/batch-search-advanced.R |only cmmr-1.0.3/cmmr/R/batch-search.R |only cmmr-1.0.3/cmmr/R/create-advanced-batch-body.R |only cmmr-1.0.3/cmmr/R/create-batch-body.R |only cmmr-1.0.3/cmmr/R/create-msms-body.R |only cmmr-1.0.3/cmmr/R/msms-search.R |only cmmr-1.0.3/cmmr/R/zzz.R | 8 cmmr-1.0.3/cmmr/README.md | 371 ++++++++--------- cmmr-1.0.3/cmmr/man/advanced_batch_search.Rd | 124 ++--- cmmr-1.0.3/cmmr/man/batch_search.Rd | 63 +- cmmr-1.0.3/cmmr/man/create_advanced_batch_body.Rd | 31 - cmmr-1.0.3/cmmr/man/create_batch_body.Rd | 62 +- cmmr-1.0.3/cmmr/man/create_msms_body.Rd | 26 - cmmr-1.0.3/cmmr/man/msms_search.Rd | 87 ++- cmmr-1.0.3/cmmr/tests/testthat/test_create_msms_body.R | 4 23 files changed, 444 insertions(+), 403 deletions(-)
Title: Discrete Nonlinear Filtering for Stochastic Volatility Models
Description: Implements the discrete nonlinear filter (DNF) of Kitagawa (1987) <doi:10.1080/01621459.1987.10478534> to a wide class of stochastic volatility (SV) models with return and volatility jumps following the work of Bégin and Boudreault (2021) <doi:10.1080/10618600.2020.1840995> to obtain likelihood evaluations and maximum likelihood parameter estimates. Offers several built-in SV models and a flexible framework for users to create customized models by specifying drift and diffusion functions along with an arrival distribution for the return and volatility jumps. Allows for the estimation of factor models with stochastic volatility (e.g., heteroskedastic volatility CAPM) by incorporating expected return predictors. Also includes functions to compute filtering and prediction distribution estimates, to simulate data from built-in and custom SV models with jumps, and to forecast future returns and volatility values using Monte Carlo simulation from a given SV model.
Author: Louis Arsenault-Mahjoubi [aut, cre],
Jean-Francois Begin [aut],
Mathieu Boudreault [aut]
Maintainer: Louis Arsenault-Mahjoubi <larsenau@sfu.ca>
Diff between SVDNF versions 0.1.9 dated 2024-09-04 and 0.1.10 dated 2024-10-04
DESCRIPTION | 10 ++++++---- MD5 | 19 +++++++++++-------- R/DNF.R | 19 ++++++++----------- R/DNFOptim.R | 6 +++--- R/extractVolPerc.R | 2 +- R/gridMaker.R | 6 +++--- R/initGuess.R | 29 +++++++++-------------------- build |only inst/doc/vignette.pdf |binary inst/doc/vignette.pdf.asis |only man/DNFOptim.Rd | 4 +++- vignettes |only 12 files changed, 44 insertions(+), 51 deletions(-)
Title: Presentation-Ready Data Summary and Analytic Result Tables
Description: Creates presentation-ready tables summarizing data sets,
regression models, and more. The code to create the tables is concise
and highly customizable. Data frames can be summarized with any
function, e.g. mean(), median(), even user-written functions.
Regression models are summarized and include the reference rows for
categorical variables. Common regression models, such as logistic
regression and Cox proportional hazards regression, are automatically
identified and the tables are pre-filled with appropriate column
headers.
Author: Daniel D. Sjoberg [aut, cre] ,
Joseph Larmarange [aut] ,
Michael Curry [aut] ,
Jessica Lavery [aut] ,
Karissa Whiting [aut] ,
Emily C. Zabor [aut] ,
Xing Bai [ctb],
Esther Drill [ctb] ,
Jessica Flynn [ctb] ,
Margie Hannum [ctb] ,
Stephanie Lobaugh [c [...truncated...]
Maintainer: Daniel D. Sjoberg <danield.sjoberg@gmail.com>
Diff between gtsummary versions 2.0.2 dated 2024-09-05 and 2.0.3 dated 2024-10-04
DESCRIPTION | 18 MD5 | 184 ++-- NAMESPACE | 8 NEWS.md | 38 R/add_difference.R | 4 R/add_difference.tbl_svysummary.R | 2 R/add_overall.R | 1 R/add_overall_ard.R | 8 R/add_p.R | 4 R/add_p.tbl_survfit.R | 2 R/add_stat_label.R | 18 R/as_gt.R | 10 R/assign_tests.R | 2 R/brdg_continuous.R | 7 R/brdg_hierarchical.R |only R/brdg_summary.R | 31 R/deprecated.R | 31 R/gtsummary-package.R | 2 R/label_style.R | 19 R/modify.R | 69 + R/print.R | 6 R/style_number.R | 15 R/style_percent.R | 26 R/style_ratio.R | 8 R/style_sigfig.R | 4 R/sysdata.rda |binary R/tbl_ard_continuous.R | 128 ++- R/tbl_ard_hierarchical.R |only R/tbl_ard_summary.R | 77 + R/tbl_continuous.R | 66 + R/tbl_custom_summary.R | 1 R/tbl_hierarchical.R |only R/tbl_summary.R | 19 R/tbl_survfit.R | 10 R/tbl_uvregression.R | 10 R/tests.R | 12 R/theme_gtsummary.R | 4 R/tibble_as_cli.R | 35 R/utils-add_p_tests.R | 7 README.md | 1 build/gtsummary.pdf |binary build/stage23.rdb |binary inst/WORDLIST | 28 inst/doc/gtsummary_definition.html | 662 ++++++++-------- man/add_difference.tbl_summary.Rd | 8 man/add_difference.tbl_svysummary.Rd | 4 man/add_overall_ard.Rd | 5 man/add_p.tbl_summary.Rd | 2 man/add_p.tbl_survfit.Rd | 2 man/add_stat_label.Rd | 3 man/assign_tests.Rd | 2 man/brdg_continuous.Rd | 8 man/brdg_hierarchical.Rd |only man/label_style.Rd | 11 man/style_number.Rd | 8 man/style_percent.Rd | 18 man/style_ratio.Rd | 8 man/style_sigfig.Rd | 8 man/tbl_ard_continuous.Rd | 62 - man/tbl_ard_hierarchical.Rd |only man/tbl_ard_summary.Rd | 21 man/tbl_continuous.Rd | 25 man/tbl_hierarchical.Rd |only man/tbl_survfit.Rd | 11 man/tbl_uvregression.Rd | 2 man/tests.Rd | 3 man/theme_gtsummary.Rd | 4 man/tibble_as_cli.Rd | 4 tests/spelling.R |only tests/testthat/_snaps/add_overall.tbl_custom_summary.md |only tests/testthat/_snaps/add_p.tbl_survfit.md | 10 tests/testthat/_snaps/add_stat_label.tbl_ard_summary.md |only tests/testthat/_snaps/custom_tidiers.md | 2 tests/testthat/_snaps/show_header_names.md | 52 - tests/testthat/_snaps/tbl_ard_continuous.md | 20 tests/testthat/_snaps/tbl_ard_summary.md | 11 tests/testthat/_snaps/tbl_continuous.md | 51 + tests/testthat/_snaps/tbl_hierarchical.md |only tests/testthat/test-add_ci.tbl_summary.R | 120 +- tests/testthat/test-add_ci.tbl_svysummary.R | 108 +- tests/testthat/test-add_overall.tbl_custom_summary.R |only tests/testthat/test-add_p.tbl_continuous.R | 19 tests/testthat/test-add_p.tbl_survfit.R | 17 tests/testthat/test-add_stat_label.tbl_ard_summary.R |only tests/testthat/test-custom_tidiers.R | 9 tests/testthat/test-inline_text.R | 2 tests/testthat/test-label_style.R | 10 tests/testthat/test-show_header_names.R | 27 tests/testthat/test-style_number.R | 10 tests/testthat/test-style_percent.R | 4 tests/testthat/test-style_ratio.R | 5 tests/testthat/test-style_sigfig.R | 5 tests/testthat/test-tbl_ard_continuous.R | 73 + tests/testthat/test-tbl_ard_hierarchical.R |only tests/testthat/test-tbl_ard_summary.R | 90 ++ tests/testthat/test-tbl_ard_wide_summary.R | 16 tests/testthat/test-tbl_continuous.R | 71 + tests/testthat/test-tbl_hierarchical.R |only tests/testthat/test-tbl_summary.R | 13 tests/testthat/test-tbl_survfit.R | 25 100 files changed, 1729 insertions(+), 837 deletions(-)
Title: Epidemiological Tool for Contact Tracing
Description: Routines for epidemiological contact tracing
and visualisation of network of contacts.
Author: Maria Noremark [aut] ,
Stefan Widgren [aut, cre]
Maintainer: Stefan Widgren <stefan.widgren@gmail.com>
Diff between EpiContactTrace versions 0.17.0 dated 2023-04-02 and 0.18.0 dated 2024-10-04
DESCRIPTION | 8 +- MD5 | 10 +-- NEWS.md | 8 ++ inst/Sweave/speak-latex.Rnw | 120 ++++++++++++++++++++--------------------- man/EpiContactTrace-package.Rd | 18 ++++++ src/trace.cpp | 67 +++++++++++----------- 6 files changed, 130 insertions(+), 101 deletions(-)
More information about EpiContactTrace at CRAN
Permanent link
Title: Tools for Spell Checking in R
Description: Spell checking common document formats including latex, markdown, manual pages,
and description files. Includes utilities to automate checking of documentation and
vignettes as a unit test during 'R CMD check'. Both British and American English are
supported out of the box and other languages can be added. In addition, packages may
define a 'wordlist' to allow custom terminology without having to abuse punctuation.
Author: Jeroen Ooms [cre, aut] ,
Jim Hester [aut]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between spelling versions 2.3.0 dated 2024-03-05 and 2.3.1 dated 2024-10-04
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- R/wordlist.R | 2 +- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: Mobile Ready 'shiny' Apps with Standalone Capabilities
Description: Develop outstanding 'shiny' apps for 'iOS' and 'Android' as well as beautiful 'shiny' gadgets.
'shinyMobile' is built on top of the latest 'Framework7' template <https://framework7.io>.
Discover 14 new input widgets (sliders, vertical sliders, stepper,
grouped action buttons, toggles, picker, smart select, ...), 2 themes (light and dark),
12 new widgets (expandable cards, badges, chips, timelines, gauges, progress bars, ...)
combined with the power of server-side notifications such as alerts, modals, toasts,
action sheets, sheets (and more) as well as 3 layouts (single, tabs and split).
Author: David Granjon [aut, cre],
Veerle van Leemput [aut],
AthlyticZ [fnd],
Victor Perrier [aut],
John Coene [ctb],
Isabelle Rudolf [aut],
Dieter Menne [ctb],
Marvelapp [ctb, cph] ,
Vladimir Kharlampidi [ctb, cph]
Maintainer: David Granjon <dgranjon@ymail.com>
Diff between shinyMobile versions 2.0.0 dated 2024-05-27 and 2.0.1 dated 2024-10-04
shinyMobile-2.0.0/shinyMobile/inst/shinyMobile-2.0.0 |only shinyMobile-2.0.1/shinyMobile/DESCRIPTION | 8 shinyMobile-2.0.1/shinyMobile/MD5 | 84 +++++----- shinyMobile-2.0.1/shinyMobile/NEWS.md | 7 shinyMobile-2.0.1/shinyMobile/R/f7-inputs.R | 2 shinyMobile-2.0.1/shinyMobile/R/f7Button.R | 2 shinyMobile-2.0.1/shinyMobile/R/f7Progress.R | 1 shinyMobile-2.0.1/shinyMobile/R/preview_mobile.R | 1 shinyMobile-2.0.1/shinyMobile/R/shinyMobile-dependencies.R | 4 shinyMobile-2.0.1/shinyMobile/R/utils.R | 2 shinyMobile-2.0.1/shinyMobile/README.md | 7 shinyMobile-2.0.1/shinyMobile/inst/doc/inputs-layout.R | 6 shinyMobile-2.0.1/shinyMobile/inst/doc/inputs-layout.Rmd | 6 shinyMobile-2.0.1/shinyMobile/inst/doc/inputs-layout.html | 36 ++-- shinyMobile-2.0.1/shinyMobile/inst/doc/lists.R | 14 - shinyMobile-2.0.1/shinyMobile/inst/doc/lists.Rmd | 14 - shinyMobile-2.0.1/shinyMobile/inst/doc/lists.html | 52 +++--- shinyMobile-2.0.1/shinyMobile/inst/doc/pwa.Rmd | 3 shinyMobile-2.0.1/shinyMobile/inst/doc/pwa.html | 12 - shinyMobile-2.0.1/shinyMobile/inst/doc/reconnect.html | 4 shinyMobile-2.0.1/shinyMobile/inst/doc/shinyMobile-tools.R | 11 - shinyMobile-2.0.1/shinyMobile/inst/doc/shinyMobile-tools.Rmd | 11 - shinyMobile-2.0.1/shinyMobile/inst/doc/shinyMobile-tools.html | 43 ++--- shinyMobile-2.0.1/shinyMobile/inst/doc/shinyMobile.R | 6 shinyMobile-2.0.1/shinyMobile/inst/doc/shinyMobile.Rmd | 6 shinyMobile-2.0.1/shinyMobile/inst/doc/shinyMobile.html | 36 ++-- shinyMobile-2.0.1/shinyMobile/inst/doc/update-app.R | 20 +- shinyMobile-2.0.1/shinyMobile/inst/doc/update-app.Rmd | 20 +- shinyMobile-2.0.1/shinyMobile/inst/doc/update-app.html | 62 +++---- shinyMobile-2.0.1/shinyMobile/inst/examples/progress/app.R | 5 shinyMobile-2.0.1/shinyMobile/inst/examples/update_entity/app.R | 2 shinyMobile-2.0.1/shinyMobile/inst/shinyMobile-2.0.1 |only shinyMobile-2.0.1/shinyMobile/man/preview_mobile.Rd | 1 shinyMobile-2.0.1/shinyMobile/man/progress.Rd | 5 shinyMobile-2.0.1/shinyMobile/man/updateF7Entity.Rd | 2 shinyMobile-2.0.1/shinyMobile/tests/testthat/test-f7List.R | 2 shinyMobile-2.0.1/shinyMobile/tests/testthat/test-f7Progress.R | 8 shinyMobile-2.0.1/shinyMobile/vignettes/inputs-layout.Rmd | 6 shinyMobile-2.0.1/shinyMobile/vignettes/lists.Rmd | 14 - shinyMobile-2.0.1/shinyMobile/vignettes/pwa.Rmd | 3 shinyMobile-2.0.1/shinyMobile/vignettes/shinyMobile-tools.Rmd | 11 - shinyMobile-2.0.1/shinyMobile/vignettes/shinyMobile.Rmd | 6 shinyMobile-2.0.1/shinyMobile/vignettes/update-app.Rmd | 20 +- 43 files changed, 290 insertions(+), 275 deletions(-)
Title: A Simple HTTP Server to Serve Static Files or Dynamic Documents
Description: Start an HTTP server in R to serve static files, or dynamic
documents that can be converted to HTML files (e.g., R Markdown) under a
given directory.
Author: Yihui Xie [aut, cre] ,
Carson Sievert [ctb],
Jesse Anderson [ctb],
Ramnath Vaidyanathan [ctb],
Romain Lesur [ctb],
Posit Software, PBC [cph, fnd]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between servr versions 0.31 dated 2024-08-29 and 0.32 dated 2024-10-04
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/static.R | 2 +- R/utils.R | 2 +- 4 files changed, 9 insertions(+), 9 deletions(-)
Title: Solve ODE for GUTS-RED-SD and GUTS-RED-IT Using Compiled Code
Description: Allows performing forwards prediction for the General Unified
Threshold model of Survival using compiled ode code. This package
was created to avoid dependency with the 'morse' package that requires
the installation of 'JAGS'. This package is based on functions from
the 'morse' package v3.3.1: Virgile Baudrot, Sandrine Charles,
Marie Laure Delignette-Muller, Wandrille Duchemin, Benoit Goussen,
Nils Kehrein, Guillaume Kon-Kam-King, Christelle Lopes, Philippe Ruiz,
Alexander Singer and Philippe Veber (2021) <https://CRAN.R-project.org/package=morse>.
Author: Benoit Goussen [aut, cre]
Maintainer: Benoit Goussen <benoit.goussen@ibacon.com>
Diff between odeGUTS versions 1.0.2 dated 2023-04-30 and 1.0.3 dated 2024-10-04
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 33 ++++++++++++++++++--------------- man/odeGUTS-package.Rd | 9 +-------- src/gutsRedIT.c | 15 ++++++++------- src/gutsRedSD.c | 21 +++++++++++---------- 6 files changed, 47 insertions(+), 49 deletions(-)
Title: Multi-State Markov and Hidden Markov Models in Continuous Time
Description: Functions for fitting continuous-time Markov and hidden
Markov multi-state models to longitudinal data. Designed for
processes observed at arbitrary times in continuous time (panel data)
but some other observation schemes are supported. Both Markov
transition rates and the hidden Markov output process can be modelled
in terms of covariates, which may be constant or piecewise-constant
in time.
Author: Christopher Jackson [aut, cre]
Maintainer: Christopher Jackson <chris.jackson@mrc-bsu.cam.ac.uk>
Diff between msm versions 1.8 dated 2024-09-08 and 1.8.1 dated 2024-10-04
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 9 +++++++-- R/msm.R | 10 +++++++--- build/vignette.rds |binary inst/doc/msm-manual.pdf |binary tests/testthat/test_deriv.r | 2 ++ tests/testthat/test_models_hmmmulti.r | 6 ++++++ 8 files changed, 33 insertions(+), 16 deletions(-)
Title: Enhanced Foreign Function Interface Supporting Long Vectors
Description: Provides .C64(), which is an enhanced version of .C()
and .Fortran() from the foreign function interface. .C64() supports long
vectors, arguments of type 64-bit integer, and provides a mechanism to
avoid unnecessary copies of read-only and write-only arguments. This
makes it a convenient and fast interface to C/C++ and Fortran code.
Author: Kaspar Moesinger [aut],
Florian Gerber [aut] ,
Reinhard Furrer [cre, ctb]
Maintainer: Reinhard Furrer <reinhard.furrer@uzh.ch>
Diff between dotCall64 versions 1.1-1 dated 2023-11-28 and 1.2 dated 2024-10-04
DESCRIPTION | 16 ++++++++-------- MD5 | 16 ++++++++-------- NEWS | 9 ++++++--- src/dotCall64.c | 17 +++++++++-------- tests/testthat/test-againstDotC.R | 8 ++++---- tests/testthat/test-flow-center.R | 18 +++++++++--------- tests/testthat/test-flow-left.R | 14 +++++++------- tests/testthat/test-flow-right.R | 4 ++-- tests/testthat/test-long_int64.R | 10 ++++++++-- 9 files changed, 61 insertions(+), 51 deletions(-)
Title: Construct and Visualize TDA Mapper Graphs
Description: Topological data analysis (TDA) is a method of data analysis that
uses techniques from topology to analyze high-dimensional data. Here we
implement Mapper, an algorithm from this area developed by Singh, Mémoli and
Carlsson (2007) which generalizes the concept of a
Reeb graph <https://en.wikipedia.org/wiki/Reeb_graph>. The output graph is
able to be visualized in R using 'igraph' or using a free network analysis
software called 'Cytoscape', available for download from at
<https://cytoscape.org/>.
Author: George Clare Kennedy [aut, cre]
Maintainer: George Clare Kennedy <george-clarekennedy@uiowa.edu>
Diff between mappeR versions 0.1.3 dated 2024-10-04 and 0.1.5 dated 2024-10-04
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 9 +++++++++ R/art_studio.R | 2 +- R/watering_hole.R | 9 +++++---- man/compute_tightness.Rd | 2 +- tests/testthat/test-covering.R | 20 ++++++++++++-------- 7 files changed, 37 insertions(+), 23 deletions(-)
Title: Recommendation by Collaborative Filtering
Description: Provides methods and functions to implement a Recommendation
System based on Collaborative Filtering Methodology.
See Aggarwal (2016) <doi:10.1007/978-3-319-29659-3> for an overview.
Author: Jessica Kubrusly [aut, cre] ,
Thiago Lima [ctb],
Lucas Oliveira [ctb]
Maintainer: Jessica Kubrusly <jessicakubrusly@id.uff.br>
Diff between CFilt versions 0.2.1 dated 2020-10-14 and 0.3.0 dated 2024-10-04
CFilt-0.2.1/CFilt/man/CFilt.Rd |only CFilt-0.3.0/CFilt/DESCRIPTION | 40 CFilt-0.3.0/CFilt/MD5 | 35 CFilt-0.3.0/CFilt/NAMESPACE | 9 CFilt-0.3.0/CFilt/R/CF.R | 4294 ++++++++++++-------------------- CFilt-0.3.0/CFilt/R/CFbuilder.R | 862 +++--- CFilt-0.3.0/CFilt/R/CFilt.R | 28 CFilt-0.3.0/CFilt/R/cosine.R |only CFilt-0.3.0/CFilt/R/estimaterating.R |only CFilt-0.3.0/CFilt/R/jaccard.R |only CFilt-0.3.0/CFilt/R/kclosestitems.R |only CFilt-0.3.0/CFilt/R/movies.R | 7 CFilt-0.3.0/CFilt/R/pearson.R |only CFilt-0.3.0/CFilt/R/topkitems.R |only CFilt-0.3.0/CFilt/R/topkusers.R |only CFilt-0.3.0/CFilt/data/movies.RData |binary CFilt-0.3.0/CFilt/man/CF-class.Rd | 404 +-- CFilt-0.3.0/CFilt/man/CFbuilder.Rd | 102 CFilt-0.3.0/CFilt/man/cosine.Rd |only CFilt-0.3.0/CFilt/man/estimaterating.Rd |only CFilt-0.3.0/CFilt/man/jaccard.Rd |only CFilt-0.3.0/CFilt/man/kclosestitems.Rd |only CFilt-0.3.0/CFilt/man/movies.Rd | 153 - CFilt-0.3.0/CFilt/man/pearson.Rd |only CFilt-0.3.0/CFilt/man/topkitems.Rd |only CFilt-0.3.0/CFilt/man/topkusers.Rd |only 26 files changed, 2677 insertions(+), 3257 deletions(-)
Title: Statistical Tests for Assessing Trinormal ROC Data
Description: Several statistical test functions as well as a function for exploratory data
analysis to investigate classifiers allocating individuals to one of three disjoint and
ordered classes. In a single classifier assessment the discriminatory power is compared
to classification by chance. In a comparison of two classifiers the null hypothesis
corresponds to equal discriminatory power of the two classifiers.
See also "ROC Analysis for Classification and Prediction in Practice" by Nakas, Bantis
and Gatsonis (2023), ISBN 9781482233704.
Author: Samuel Noll [aut],
Reinhard Furrer [aut, cre] ,
Benjamin Reiser [ctb],
Christos T. Nakas [ctb],
Annina Cincera [aut]
Maintainer: Reinhard Furrer <reinhard.furrer@uzh.ch>
Diff between trinROC versions 0.6 dated 2022-10-27 and 0.7 dated 2024-10-04
trinROC-0.6/trinROC/tests/Examples |only trinROC-0.7/trinROC/DESCRIPTION | 35 trinROC-0.7/trinROC/MD5 | 34 trinROC-0.7/trinROC/NAMESPACE | 1 trinROC-0.7/trinROC/NEWS.md | 12 trinROC-0.7/trinROC/R/boot.test.R | 36 trinROC-0.7/trinROC/R/roc.eda.R | 70 + trinROC-0.7/trinROC/R/trinROC.test.R | 2 trinROC-0.7/trinROC/R/trinVUS.test.R | 35 trinROC-0.7/trinROC/README.md | 4 trinROC-0.7/trinROC/build/partial.rdb |binary trinROC-0.7/trinROC/build/vignette.rds |binary trinROC-0.7/trinROC/inst/CITATION | 22 trinROC-0.7/trinROC/inst/doc/trinROC_vignette.html | 903 ++++++++++++--------- trinROC-0.7/trinROC/man/roc.eda.Rd | 20 trinROC-0.7/trinROC/man/trinROC-package.Rd | 8 trinROC-0.7/trinROC/tests/testthat.Rout.save | 20 trinROC-0.7/trinROC/tests/testthat/Rplots.pdf |binary trinROC-0.7/trinROC/tests/tt.Rout |only 19 files changed, 719 insertions(+), 483 deletions(-)
Title: Modern Database Engine for Complex Data Based on
Multi-Dimensional Arrays
Description: The modern database 'TileDB' introduces a powerful on-disk
format for storing and accessing any complex data based on multi-dimensional
arrays. It supports dense and sparse arrays, dataframes and key-values stores,
cloud storage ('S3', 'GCS', 'Azure'), chunked arrays, multiple compression,
encryption and checksum filters, uses a fully multi-threaded implementation,
supports parallel I/O, data versioning ('time travel'), metadata and groups.
It is implemented as an embeddable cross-platform C++ library with APIs from
several languages, and integrations. This package provides the R support.
Author: TileDB, Inc. [aut, cph],
Dirk Eddelbuettel [aut],
Isaiah Norton [cre]
Maintainer: Isaiah Norton <isaiah@tiledb.com>
Diff between tiledb versions 0.30.0 dated 2024-09-11 and 0.30.2 dated 2024-10-04
DESCRIPTION | 17 MD5 | 62 NEWS.md | 13 R/RcppExports.R | 34 README.md | 1 inst/doc/data-ingestion-from-sql.html | 2 inst/doc/documentation.html | 2 inst/doc/installation-options.html | 2 inst/doc/introduction.html | 18 inst/doc/introduction.md | 12 inst/doc/tiledb-mariadb-examples.html | 2 inst/tinytest/test_dim.R | 6 man/tiledb-package.Rd | 3 man/tiledb_datatype_R_type.Rd | 11 man/vfs_file.Rd | 23 src/Makevars.in | 19 src/array_buffers.h | 129 src/arrow_adapter.h | 402 -- src/arrowio.cpp | 409 +- src/batched.cpp | 17 src/column_buffer.cpp | 334 - src/column_buffer.h | 560 +-- src/deprecation.cpp | 73 src/durations.cpp | 86 src/libtiledb.cpp | 6151 +++++++++++++++++----------------- src/libtiledb.h | 340 + src/nullable.cpp | 226 - src/shmem.cpp | 324 - src/tiledb_arrowio.h | 14 src/virtualfile.cpp | 754 ++-- tools/tiledbVersion.txt | 4 vignettes/introduction.md | 12 32 files changed, 5213 insertions(+), 4849 deletions(-)
Title: Open Source OCR Engine
Description: Bindings to 'Tesseract':
a powerful optical character recognition (OCR) engine that supports over 100 languages.
The engine is highly configurable in order to tune the detection algorithms and
obtain the best possible results.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between tesseract versions 5.2.1 dated 2023-11-20 and 5.2.2 dated 2024-10-04
DESCRIPTION | 16 ++++++++-------- MD5 | 22 +++++++++++----------- R/tessdata.R | 25 ++++++++++++++++++------- R/tesseract.R | 2 +- build/vignette.rds |binary inst/WORDLIST | 1 + inst/doc/intro.html | 17 ++++++++--------- man/ocr.Rd | 4 ++-- man/tessdata.Rd | 15 +++++++++++---- src/Makevars.win | 2 +- src/tesseract.cpp | 4 ++-- src/tesseract_types.h | 2 +- 12 files changed, 64 insertions(+), 46 deletions(-)
Title: R Commander
Description: A platform-independent basic-statistics GUI (graphical user interface) for R, based on the tcltk package.
Author: John Fox [aut, cre],
Milan Bouchet-Valat [aut],
Manuel Munoz Marquez [aut],
Liviu Andronic [ctb],
Michael Ash [ctb],
Theophilius Boye [ctb],
Stefano Calza [ctb],
Andy Chang [ctb],
Vilmantas Gegzna [ctb],
Philippe Grosjean [ctb],
Richard Heiberger [ct [...truncated...]
Maintainer: John Fox <jfox@mcmaster.ca>
Diff between Rcmdr versions 2.9-2 dated 2024-02-08 and 2.9-4 dated 2024-10-04
Rcmdr-2.9-2/Rcmdr/R/Command.R |only Rcmdr-2.9-2/Rcmdr/man/Command.Rd |only Rcmdr-2.9-2/Rcmdr/vignettes/fig-9-es-0.jpg |only Rcmdr-2.9-2/Rcmdr/vignettes/fig-9-es-1.jpg |only Rcmdr-2.9-2/Rcmdr/vignettes/fig-9-es-10.jpg |only Rcmdr-2.9-2/Rcmdr/vignettes/fig-9-es-11.jpg |only Rcmdr-2.9-2/Rcmdr/vignettes/fig-9-es-12.jpg |only Rcmdr-2.9-2/Rcmdr/vignettes/fig-9-es-13.jpg |only Rcmdr-2.9-2/Rcmdr/vignettes/fig-9-es-14.jpg |only Rcmdr-2.9-2/Rcmdr/vignettes/fig-9-es-15.jpg |only Rcmdr-2.9-2/Rcmdr/vignettes/fig-9-es-2.jpg |only Rcmdr-2.9-2/Rcmdr/vignettes/fig-9-es-3.jpg |only Rcmdr-2.9-2/Rcmdr/vignettes/fig-9-es-4.jpg |only Rcmdr-2.9-2/Rcmdr/vignettes/fig-9-es-5.jpg |only Rcmdr-2.9-2/Rcmdr/vignettes/fig-9-es-6.jpg |only Rcmdr-2.9-2/Rcmdr/vignettes/fig-9-es-7.jpg |only Rcmdr-2.9-2/Rcmdr/vignettes/fig-9-es-8.jpg |only Rcmdr-2.9-2/Rcmdr/vignettes/fig-9-es-9.jpg |only Rcmdr-2.9-4/Rcmdr/DESCRIPTION | 14 Rcmdr-2.9-4/Rcmdr/MD5 | 91 - Rcmdr-2.9-4/Rcmdr/NAMESPACE | 10 Rcmdr-2.9-4/Rcmdr/NEWS | 12 Rcmdr-2.9-4/Rcmdr/R/CR-AV-Plot3D.R | 24 Rcmdr-2.9-4/Rcmdr/R/cluster.R | 10 Rcmdr-2.9-4/Rcmdr/R/commander.R | 9 Rcmdr-2.9-4/Rcmdr/R/data-menu.R | 332 +--- Rcmdr-2.9-4/Rcmdr/R/distributions-sample.R | 4 Rcmdr-2.9-4/Rcmdr/R/globals.R | 6 Rcmdr-2.9-4/Rcmdr/R/graphs-menu.R | 6 Rcmdr-2.9-4/Rcmdr/R/statistics-means-menu.R | 440 ++--- Rcmdr-2.9-4/Rcmdr/R/statistics-models-menu.R | 56 Rcmdr-2.9-4/Rcmdr/R/statistics-summaries-menu.R | 816 ++++------ Rcmdr-2.9-4/Rcmdr/R/utilities.R | 324 +-- Rcmdr-2.9-4/Rcmdr/build/vignette.rds |binary Rcmdr-2.9-4/Rcmdr/inst/CITATION | 10 Rcmdr-2.9-4/Rcmdr/inst/doc/Commander-ru.pdf |only Rcmdr-2.9-4/Rcmdr/inst/doc/Empezando-con-Rcmdr-es.R | 3 Rcmdr-2.9-4/Rcmdr/inst/doc/Empezando-con-Rcmdr-es.Rnw | 1 Rcmdr-2.9-4/Rcmdr/inst/doc/Empezando-con-Rcmdr-es.pdf |binary Rcmdr-2.9-4/Rcmdr/inst/doc/Getting-Started-with-the-Rcmdr-ja.pdf |only Rcmdr-2.9-4/Rcmdr/inst/doc/Getting-Started-with-the-Rcmdr-ko.pdf |only Rcmdr-2.9-4/Rcmdr/inst/doc/Getting-Started-with-the-Rcmdr.R | 4 Rcmdr-2.9-4/Rcmdr/inst/doc/Getting-Started-with-the-Rcmdr.Rnw | 118 - Rcmdr-2.9-4/Rcmdr/inst/doc/Getting-Started-with-the-Rcmdr.pdf |binary Rcmdr-2.9-4/Rcmdr/inst/po/es/LC_MESSAGES/R-Rcmdr.mo |binary Rcmdr-2.9-4/Rcmdr/inst/po/ja/LC_MESSAGES/R-Rcmdr.mo |binary Rcmdr-2.9-4/Rcmdr/inst/po/sl/LC_MESSAGES/R-Rcmdr.mo |binary Rcmdr-2.9-4/Rcmdr/man/Plugins.Rd | 10 Rcmdr-2.9-4/Rcmdr/man/Rcmdr-internal.Rd | 2 Rcmdr-2.9-4/Rcmdr/man/Rcmdr-package.Rd | 26 Rcmdr-2.9-4/Rcmdr/man/Rcmdr.Utilities.Rd | 6 Rcmdr-2.9-4/Rcmdr/po/R-Rcmdr.pot | 16 Rcmdr-2.9-4/Rcmdr/po/R-es.po | 115 - Rcmdr-2.9-4/Rcmdr/po/R-ja.po | 50 Rcmdr-2.9-4/Rcmdr/po/R-sl.po | 569 +++--- Rcmdr-2.9-4/Rcmdr/vignettes/Empezando-con-Rcmdr-es.Rnw | 1 Rcmdr-2.9-4/Rcmdr/vignettes/Getting-Started-with-the-Rcmdr.Rnw | 118 - 57 files changed, 1564 insertions(+), 1639 deletions(-)
Title: Bindings to AppArmor and Security Related Linux Tools
Description: Bindings to kernel methods for enforcing security restrictions.
AppArmor can apply mandatory access control (MAC) policies on a given task
(process) via security profiles with detailed ACL definitions. In addition
this package implements bindings for setting process resource limits (rlimit),
uid, gid, affinity and priority. The high level R function 'eval.secure'
builds on these methods to perform dynamic sandboxing: it evaluates a single
R expression within a temporary fork which acts as a sandbox by enforcing
fine grained restrictions without affecting the main R process. A portable
version of this function is now available in the 'unix' package.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between RAppArmor versions 3.2.4 dated 2023-12-04 and 3.2.5 dated 2024-10-04
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- build/vignette.rds |binary 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Parameter Estimation of Item Response Theory with Estimation of
Latent Distribution
Description: Item response theory (IRT) parameter estimation using marginal maximum likelihood and expectation-maximization algorithm
(Bock & Aitkin, 1981 <doi:10.1007/BF02293801>).
Within parameter estimation algorithm, several methods for latent distribution estimation are available.
Reflecting some features of the true latent distribution, these latent distribution estimation methods can possibly enhance the estimation accuracy and free the normality assumption on the latent distribution.
Author: Seewoo Li [aut, cre, cph]
Maintainer: Seewoo Li <seewooli@g.ucla.edu>
Diff between IRTest versions 2.0.0 dated 2024-03-22 and 2.1.0 dated 2024-10-04
IRTest-2.0.0/IRTest/R/plot.IRTest.R |only IRTest-2.0.0/IRTest/R/print.IRTest.R |only IRTest-2.0.0/IRTest/R/summary.IRTest.R |only IRTest-2.1.0/IRTest/DESCRIPTION | 14 IRTest-2.1.0/IRTest/MD5 | 97 +-- IRTest-2.1.0/IRTest/NAMESPACE | 3 IRTest-2.1.0/IRTest/NEWS.md | 6 IRTest-2.1.0/IRTest/R/DataGeneration.R | 55 + IRTest-2.1.0/IRTest/R/IRTest_Cont.R | 27 IRTest-2.1.0/IRTest/R/IRTest_Dich.R | 6 IRTest-2.1.0/IRTest/R/IRTest_Mix.R | 10 IRTest-2.1.0/IRTest/R/IRTest_Poly.R | 6 IRTest-2.1.0/IRTest/R/factor_score.R | 222 ++++++ IRTest-2.1.0/IRTest/R/non_exporting_functions.R | 447 ++++++++++++-- IRTest-2.1.0/IRTest/R/plot.irtest.R |only IRTest-2.1.0/IRTest/R/print.irtest.R |only IRTest-2.1.0/IRTest/R/summary.irtest.R |only IRTest-2.1.0/IRTest/R/sysdata.rda |binary IRTest-2.1.0/IRTest/README.md | 2 IRTest-2.1.0/IRTest/build/vignette.rds |binary IRTest-2.1.0/IRTest/inst/CITATION | 6 IRTest-2.1.0/IRTest/inst/doc/vignette_for_IRTest.R | 93 +- IRTest-2.1.0/IRTest/inst/doc/vignette_for_IRTest.Rmd | 120 +++ IRTest-2.1.0/IRTest/inst/doc/vignette_for_IRTest.html | 247 +++++-- IRTest-2.1.0/IRTest/man/DataGeneration.Rd | 4 IRTest-2.1.0/IRTest/man/IRTest_Cont.Rd | 302 ++++----- IRTest-2.1.0/IRTest/man/IRTest_Dich.Rd | 2 IRTest-2.1.0/IRTest/man/IRTest_Mix.Rd | 2 IRTest-2.1.0/IRTest/man/IRTest_Poly.Rd | 2 IRTest-2.1.0/IRTest/man/adaptive_test.Rd |only IRTest-2.1.0/IRTest/man/anova.IRTest.Rd | 40 - IRTest-2.1.0/IRTest/man/best_model.Rd | 44 - IRTest-2.1.0/IRTest/man/cat_clps.Rd | 52 - IRTest-2.1.0/IRTest/man/coef.IRTest.Rd | 42 - IRTest-2.1.0/IRTest/man/coef_se.Rd | 38 - IRTest-2.1.0/IRTest/man/factor_score.Rd | 94 +- IRTest-2.1.0/IRTest/man/figures/README-results-1.png |binary IRTest-2.1.0/IRTest/man/inform_f_item.Rd | 54 - IRTest-2.1.0/IRTest/man/inform_f_test.Rd | 44 - IRTest-2.1.0/IRTest/man/item_fit.Rd | 102 +-- IRTest-2.1.0/IRTest/man/latent_distribution.Rd | 74 +- IRTest-2.1.0/IRTest/man/logLik.IRTest.Rd | 38 - IRTest-2.1.0/IRTest/man/plot.IRTest.Rd | 6 IRTest-2.1.0/IRTest/man/plot_item.Rd | 80 +- IRTest-2.1.0/IRTest/man/print.IRTest.Rd | 2 IRTest-2.1.0/IRTest/man/print.IRTest_summary.Rd | 2 IRTest-2.1.0/IRTest/man/recategorize.Rd | 84 +- IRTest-2.1.0/IRTest/man/summary.IRTest.Rd | 2 IRTest-2.1.0/IRTest/tests/testthat.R | 24 IRTest-2.1.0/IRTest/tests/testthat/test-IRTest_Dich.R | 9 IRTest-2.1.0/IRTest/tests/testthat/test-S3_methods.R | 10 IRTest-2.1.0/IRTest/tests/testthat/test-summary_n_print.R | 2 IRTest-2.1.0/IRTest/vignettes/vignette_for_IRTest.Rmd | 120 +++ 53 files changed, 1776 insertions(+), 860 deletions(-)
Title: A GraphQL Query Parser
Description: Bindings to the 'libgraphqlparser' C++ library. Parses GraphQL
<https://graphql.org> syntax and exports the AST in JSON format.
Author: Jeroen Ooms [cre, aut],
Barret Schloerke [ctb],
Scott Wolchok [ctb],
Facebook, Inc [aut, cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between graphql versions 1.5.1 dated 2022-09-25 and 1.5.2 dated 2024-10-04
DESCRIPTION | 18 +++++++++--------- MD5 | 4 ++-- src/Makevars | 1 - 3 files changed, 11 insertions(+), 12 deletions(-)
Title: Estimating Controlled Direct Effects for Explaining Causal
Findings
Description: A set of functions to estimate the controlled direct effect of treatment fixing a potential mediator to a specific value. Implements the sequential g-estimation estimator described in Vansteelandt (2009) <doi:10.1097/EDE.0b013e3181b6f4c9> and Acharya, Blackwell, and Sen (2016) <doi:10.1017/S0003055416000216> and the telescope matching estimator described in Blackwell and Strezhnev (2020) <doi:10.1111/rssa.12759>.
Author: Matthew Blackwell [aut, cre] ,
Avidit Acharya [aut],
Maya Sen [aut],
Shiro Kuriwaki [aut],
Jacob Brown [aut],
Anton Strezhnev [aut]
Maintainer: Matthew Blackwell <mblackwell@gmail.com>
Diff between DirectEffects versions 0.2.1 dated 2021-05-12 and 0.3 dated 2024-10-04
DirectEffects-0.2.1/DirectEffects/man/seq.g.vcov.Rd |only DirectEffects-0.3/DirectEffects/DESCRIPTION | 33 DirectEffects-0.3/DirectEffects/MD5 | 72 - DirectEffects-0.3/DirectEffects/NAMESPACE | 39 DirectEffects-0.3/DirectEffects/R/DirectEffects.R | 2 DirectEffects-0.3/DirectEffects/R/aipw.R |only DirectEffects-0.3/DirectEffects/R/boots_g.R | 15 DirectEffects-0.3/DirectEffects/R/cde_estimator.R |only DirectEffects-0.3/DirectEffects/R/data.R | 316 ++++ DirectEffects-0.3/DirectEffects/R/did_cde.R |only DirectEffects-0.3/DirectEffects/R/estimate.R |only DirectEffects-0.3/DirectEffects/R/fit.R |only DirectEffects-0.3/DirectEffects/R/ipw.R |only DirectEffects-0.3/DirectEffects/R/reg_impute.R |only DirectEffects-0.3/DirectEffects/R/telescope_match.R |only DirectEffects-0.3/DirectEffects/R/treat.R |only DirectEffects-0.3/DirectEffects/R/utils.R |only DirectEffects-0.3/DirectEffects/build/partial.rdb |binary DirectEffects-0.3/DirectEffects/build/vignette.rds |binary DirectEffects-0.3/DirectEffects/data/jobcorps.RData |only DirectEffects-0.3/DirectEffects/data/transphobia.rda |only DirectEffects-0.3/DirectEffects/inst/doc/DirectEffects.R | 102 - DirectEffects-0.3/DirectEffects/inst/doc/DirectEffects.Rmd | 207 -- DirectEffects-0.3/DirectEffects/inst/doc/DirectEffects.html | 701 ++++++---- DirectEffects-0.3/DirectEffects/man/balance.tmatch.Rd |only DirectEffects-0.3/DirectEffects/man/balance_table.Rd |only DirectEffects-0.3/DirectEffects/man/boots_g.Rd | 14 DirectEffects-0.3/DirectEffects/man/boots_tm.Rd |only DirectEffects-0.3/DirectEffects/man/cde_aipw.Rd |only DirectEffects-0.3/DirectEffects/man/cde_did_aipw.Rd |only DirectEffects-0.3/DirectEffects/man/cde_ipw.Rd |only DirectEffects-0.3/DirectEffects/man/cde_reg_impute.Rd |only DirectEffects-0.3/DirectEffects/man/cde_telescope_match.Rd |only DirectEffects-0.3/DirectEffects/man/civilwar.Rd | 86 + DirectEffects-0.3/DirectEffects/man/estimate.Rd |only DirectEffects-0.3/DirectEffects/man/figures |only DirectEffects-0.3/DirectEffects/man/jobcorps.Rd |only DirectEffects-0.3/DirectEffects/man/outreg_model.Rd |only DirectEffects-0.3/DirectEffects/man/plotDiag.tmatch.Rd |only DirectEffects-0.3/DirectEffects/man/ploughs.Rd | 45 DirectEffects-0.3/DirectEffects/man/reexports.Rd |only DirectEffects-0.3/DirectEffects/man/seq_g_vcov.Rd |only DirectEffects-0.3/DirectEffects/man/sequential_g.Rd | 2 DirectEffects-0.3/DirectEffects/man/set_treatment.Rd |only DirectEffects-0.3/DirectEffects/man/summary.tmatch.Rd |only DirectEffects-0.3/DirectEffects/man/telescope_match.Rd |only DirectEffects-0.3/DirectEffects/man/transphobia.Rd |only DirectEffects-0.3/DirectEffects/man/treat_model.Rd |only DirectEffects-0.3/DirectEffects/tests/testthat/test_logit.R |only DirectEffects-0.3/DirectEffects/tests/testthat/test_outreg.R |only DirectEffects-0.3/DirectEffects/vignettes/DirectEffects.Rmd | 207 -- DirectEffects-0.3/DirectEffects/vignettes/DirectEffects.bib | 69 DirectEffects-0.3/DirectEffects/vignettes/articles |only DirectEffects-0.3/DirectEffects/vignettes/figures/BS_fig3.png |only 54 files changed, 1249 insertions(+), 661 deletions(-)
Title: Google's Compact Language Detector 3
Description: Google's Compact Language Detector 3 is a neural network model for language
identification and the successor of 'cld2' (available from CRAN). The algorithm is still
experimental and takes a novel approach to language detection with different properties
and outcomes. It can be useful to combine this with the Bayesian classifier results
from 'cld2'. See <https://github.com/google/cld3#readme> for more information.
Author: Jeroen Ooms [aut, cre] ,
Google Inc [cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between cld3 versions 1.6.0 dated 2023-09-25 and 1.6.1 dated 2024-10-04
DESCRIPTION | 13 +++++++------ MD5 | 4 ++-- configure | 2 +- 3 files changed, 10 insertions(+), 9 deletions(-)
Title: Transform Microplate Data into Tibbles
Description: The goal of 'tidyplate' is to help researchers convert different types of
microplates into tibbles which can be used in data analysis. It accepts xlsx and
csv files formatted in a specific way as input. It supports all types of
standard microplate formats such as 6-well, 12-well, 24-well, 48-well, 96-well, 384-well,
and, 1536-well plates.
Author: Shubham Dutta [aut, cre, cph]
Maintainer: Shubham Dutta <shubhamdutta26@gmail.com>
Diff between tidyplate versions 1.1.0 dated 2024-02-04 and 2.0.0 dated 2024-10-04
DESCRIPTION | 14 - MD5 | 78 ++++++-- NAMESPACE | 2 NEWS.md | 6 R/build_plate.R |only R/check_plate.R | 172 +++--------------- R/tidy_plate.R | 284 ++++++++++++------------------ R/utils.R | 271 +++++++++++++++++++--------- R/view_plate_names.R |only README.md | 113 ++++++++++- build/vignette.rds |binary inst/doc/getting_started.R | 66 ++++++ inst/doc/getting_started.Rmd | 94 +++++++++ inst/doc/getting_started.html | 115 +++++++++--- inst/extdata/example_12_well.xlsx |binary inst/extdata/incorrect_format.csv |only inst/extdata/multisheet_example.xlsx |only man/build_plate.Rd |only man/check_plate.Rd | 18 - man/figures/README_tidy_plate.png |binary man/figures/logo.png |only man/figures/tidyplate_hex_trans.png |only man/tidy_plate.Rd | 23 +- man/tidyplate-package.Rd | 6 man/view_plate_names.Rd |only tests/testthat/test-build_plate.R |only tests/testthat/test-check_plate.R | 75 ++++--- tests/testthat/test-tidy_plate.R | 77 +++----- tests/testthat/test-utils.R | 119 +++++++++--- tests/testthat/test-view_plate_names.R |only tests/testthat/test_data/12/build_plate |only tests/testthat/test_data/1536/build_plate |only tests/testthat/test_data/24/build_plate |only tests/testthat/test_data/384/build_plate |only tests/testthat/test_data/48/build_plate |only tests/testthat/test_data/6/build_plate |only tests/testthat/test_data/96/build_plate |only vignettes/getting_started.Rmd | 94 +++++++++ 38 files changed, 1027 insertions(+), 600 deletions(-)
Title: Read and Convert Japanese Municipality Codes
Description: Read Japanese city codes (<https://www.e-stat.go.jp/municipalities/cities>)
to get city and prefecture names, or convert to city codes at different
points in time. In addition, it merges or splits wards of designated cities
and gets all city codes at a specific point in time.
Author: Mizuki Uchida [aut, cre]
Maintainer: Mizuki Uchida <uchidamizuki@vivaldi.net>
Diff between jpcity versions 0.2.1 dated 2024-05-26 and 0.3.0 dated 2024-10-04
DESCRIPTION | 8 ++++---- MD5 | 17 +++++++++-------- NAMESPACE | 1 + NEWS.md | 5 +++++ R/city_desig.R | 27 +++++++++++++++++++++++++++ R/sysdata.rda |binary README.md | 12 ------------ man/is_city_desig.Rd |only tests/testthat/test-city_desig.R | 17 +++++++++++++++++ tests/testthat/test-parse_city.R | 25 +++++++++++++++++++++++++ 10 files changed, 88 insertions(+), 24 deletions(-)
Title: Confidence Interval Post-Selection of Variable
Description: Calculates confidence intervals after variable selection using repeated data splits. The package offers methods to address the challenges of post-selection inference, ensuring more accurate confidence intervals in models involving variable selection. The two main functions are 'lmps', which records the different models selected across multiple data splits as well as the corresponding coefficient estimates, and 'cips', which takes the lmps object as input to select variables and perform inferences using two types of voting.
Author: Boubacar DIALLO [aut, cre]
Maintainer: Boubacar DIALLO <boubacar.diallo0@yahoo.com>
Diff between CIpostSelect versions 0.1.0 dated 2024-10-02 and 0.2.0 dated 2024-10-04
DESCRIPTION | 6 MD5 | 11 NAMESPACE | 1 R/uneFonction.R | 578 +++++++++++++++++++++++++++++++++++++++++++++------- man/CIps.Rd | 2 man/lmps.Rd | 19 - man/predict.CIps.Rd |only 7 files changed, 522 insertions(+), 95 deletions(-)
Title: Asymptotic Timing
Description: Computing and visualizing comparative
asymptotic timings of different algorithms and code versions.
Also includes functionality for comparing empirical timings with
expected references such as linear or quadratic,
<https://en.wikipedia.org/wiki/Asymptotic_computational_complexity>
Also includes functionality for measuring asymptotic memory and other
quantities.
Author: Toby Hocking [aut, cre]
Maintainer: Toby Hocking <toby.hocking@r-project.org>
Diff between atime versions 2024.9.25 dated 2024-09-27 and 2024.10.3 dated 2024-10-04
DESCRIPTION | 6 MD5 | 86 ++-- NAMESPACE | 44 +- NEWS | 289 +++++++------ R/atime.R | 521 ++++++++++++------------- R/predict.R | 236 +++++------ R/references.R | 368 ++++++++--------- R/test.R | 607 ++++++++++++++--------------- R/versions.R | 380 +++++++++--------- build/vignette.rds |binary inst/doc/Custom_Plots.R | 144 +++--- inst/doc/Custom_Plots.Rmd | 200 ++++----- inst/doc/Custom_Plots.html | 500 +++++++++++------------- inst/doc/Custom_References.R | 134 +++--- inst/doc/Custom_References.Rmd | 284 ++++++------- inst/doc/Custom_References.html | 621 ++++++++++++++--------------- inst/doc/Custom_Units.R | 138 +++--- inst/doc/Custom_Units.Rmd | 320 +++++++-------- inst/doc/Custom_Units.html | 641 +++++++++++++++--------------- inst/doc/cum_median.R | 62 +- inst/doc/cum_median.Rmd | 104 ++--- inst/doc/cum_median.html | 408 +++++++++---------- inst/doc/regex.R | 128 +++--- inst/doc/regex.Rmd | 192 ++++----- inst/doc/regex.html | 532 ++++++++++++------------- inst/example_tests.R | 80 +-- inst/global_edit.R | 82 +-- man/atime.Rd | 153 +++---- man/atime_grid.Rd | 172 ++++---- man/atime_pkg.Rd | 188 ++++----- man/atime_test.Rd | 102 +++- man/atime_test_list.Rd | 165 +++---- man/atime_versions.Rd | 175 ++++---- man/atime_versions_exprs.Rd | 174 ++++---- man/atime_versions_remove.Rd | 26 - man/glob_find_replace.Rd | 38 - man/references_best.Rd | 158 +++---- tests/testthat.R | 2 tests/testthat/test-CRAN.R | 832 ++++++++++++++++++++-------------------- vignettes/Custom_Plots.Rmd | 200 ++++----- vignettes/Custom_References.Rmd | 284 ++++++------- vignettes/Custom_Units.Rmd | 320 +++++++-------- vignettes/cum_median.Rmd | 104 ++--- vignettes/regex.Rmd | 192 ++++----- 44 files changed, 5219 insertions(+), 5173 deletions(-)
Title: Archaeological Time Series
Description: A toolkit for archaeological time series and time intervals.
This package provides a system of classes and methods to represent and
work with archaeological time series and time intervals. Dates are
represented as "rata die" and can be converted to (virtually) any
calendar defined by Reingold and Dershowitz (2018)
<doi:10.1017/9781107415058>. This packages offers a simple API that
can be used by other specialized packages.
Author: Nicolas Frerebeau [aut, cre] ,
Joe Roe [aut] ,
Brice Lebrun [ctb] ,
Universite Bordeaux Montaigne [fnd],
CNRS [fnd]
Maintainer: Nicolas Frerebeau <nicolas.frerebeau@u-bordeaux-montaigne.fr>
Diff between aion versions 1.0.4 dated 2024-07-26 and 1.1.0 dated 2024-10-04
aion-1.0.4/aion/R/years.R |only aion-1.0.4/aion/inst/doc/bibliography.R |only aion-1.0.4/aion/inst/doc/bibliography.Rmd |only aion-1.0.4/aion/inst/doc/bibliography.html |only aion-1.0.4/aion/man/data.frame.Rd |only aion-1.0.4/aion/vignettes/bibliography.Rmd |only aion-1.1.0/aion/DESCRIPTION | 40 +- aion-1.1.0/aion/MD5 | 118 +++--- aion-1.1.0/aion/NAMESPACE | 8 aion-1.1.0/aion/NEWS.md | 7 aion-1.1.0/aion/R/AllClasses.R | 25 + aion-1.1.0/aion/R/AllGenerics.R | 170 +++++++--- aion-1.1.0/aion/R/aion-internal.R | 4 aion-1.1.0/aion/R/aion-package.R | 2 aion-1.1.0/aion/R/calendar-gregorian.R | 110 ------ aion-1.1.0/aion/R/calendar-julian.R | 70 ---- aion-1.1.0/aion/R/calendar.R | 9 aion-1.1.0/aion/R/coerce.R | 29 + aion-1.1.0/aion/R/intervals.R |only aion-1.1.0/aion/R/mutators.R | 25 + aion-1.1.0/aion/R/overlap.R |only aion-1.1.0/aion/R/plot.R | 98 +++++ aion-1.1.0/aion/R/rd.R |only aion-1.1.0/aion/R/show.R | 13 aion-1.1.0/aion/R/span.R |only aion-1.1.0/aion/R/subset.R | 14 aion-1.1.0/aion/R/time.R | 39 +- aion-1.1.0/aion/R/validate.R | 37 ++ aion-1.1.0/aion/R/year.R |only aion-1.1.0/aion/README.md | 44 +- aion-1.1.0/aion/build/vignette.rds |binary aion-1.1.0/aion/inst/doc/aion.html | 8 aion-1.1.0/aion/inst/doc/extending.html | 2 aion-1.1.0/aion/inst/examples/ex-duration.R |only aion-1.1.0/aion/inst/examples/ex-intervals.R |only aion-1.1.0/aion/inst/tinytest/_tinysnapshot/plot_interval_CE.svg |only aion-1.1.0/aion/inst/tinytest/_tinysnapshot/plot_interval_Inf.svg |only aion-1.1.0/aion/inst/tinytest/_tinysnapshot/plot_interval_rd.svg |only aion-1.1.0/aion/inst/tinytest/test_intervals.R |only aion-1.1.0/aion/inst/tinytest/test_series.R | 5 aion-1.1.0/aion/inst/tinytest/test_time.R | 3 aion-1.1.0/aion/man/AD-class.Rd | 1 aion-1.1.0/aion/man/BC-class.Rd | 1 aion-1.1.0/aion/man/BCE-class.Rd | 1 aion-1.1.0/aion/man/BP-class.Rd | 1 aion-1.1.0/aion/man/CE-class.Rd | 1 aion-1.1.0/aion/man/GregorianCalendar-class.Rd | 1 aion-1.1.0/aion/man/JulianCalendar-class.Rd | 1 aion-1.1.0/aion/man/RataDie-class.Rd | 2 aion-1.1.0/aion/man/TimeIntervals-class.Rd |only aion-1.1.0/aion/man/TimeScale-class.Rd | 1 aion-1.1.0/aion/man/TimeSeries-class.Rd | 4 aion-1.1.0/aion/man/aion-package.Rd | 4 aion-1.1.0/aion/man/as.data.frame.Rd |only aion-1.1.0/aion/man/as_date.Rd | 9 aion-1.1.0/aion/man/as_decimal.Rd | 2 aion-1.1.0/aion/man/as_year.Rd | 9 aion-1.1.0/aion/man/b2k-class.Rd | 1 aion-1.1.0/aion/man/calendar_get.Rd | 3 aion-1.1.0/aion/man/figures/README-time-intervals-1.png |only aion-1.1.0/aion/man/fixed.Rd | 3 aion-1.1.0/aion/man/intervals.Rd |only aion-1.1.0/aion/man/labels.Rd |only aion-1.1.0/aion/man/length.Rd |only aion-1.1.0/aion/man/overlap.Rd |only aion-1.1.0/aion/man/plot.Rd | 58 ++- aion-1.1.0/aion/man/series.Rd | 10 aion-1.1.0/aion/man/span.Rd | 54 +-- aion-1.1.0/aion/man/start.Rd | 17 - aion-1.1.0/aion/man/subset.Rd | 9 aion-1.1.0/aion/man/time.Rd | 11 aion-1.1.0/aion/man/window.Rd | 9 72 files changed, 663 insertions(+), 430 deletions(-)
Title: Extensible Style-Sheet Language Transformations
Description: An extension for the 'xml2' package to transform XML documents
by applying an 'xslt' style-sheet.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between xslt versions 1.4.5 dated 2024-04-24 and 1.4.6 dated 2024-10-04
DESCRIPTION | 10 +++++----- MD5 | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-)
Title: R Interface to the 'UNU.RAN' Random Variate Generators
Description: Interface to the 'UNU.RAN' library for Universal Non-Uniform RANdom variate generators.
Thus it allows to build non-uniform random number generators from quite arbitrary
distributions. In particular, it provides an algorithm for fast numerical inversion
for distribution with given density function.
In addition, the package contains densities, distribution functions and quantiles
from a couple of distributions.
Author: Josef Leydold [aut, cre] ,
Wolfgang H"ormann [aut]
Maintainer: Josef Leydold <josef.leydold@wu.ac.at>
Diff between Runuran versions 0.39 dated 2024-09-21 and 0.40 dated 2024-10-04
DESCRIPTION | 16 +++++++++------- MD5 | 16 ++++++++-------- NEWS | 5 +++++ configure | 18 +++++++++--------- configure.ac | 2 +- inst/doc/Runuran.pdf |binary man/Runuran-package.Rd | 4 ++-- src/Makevars.in | 2 +- vignettes/inputs/version.tex | 2 +- 9 files changed, 36 insertions(+), 29 deletions(-)
Title: NNG (Nanomsg Next Gen) Lightweight Messaging Library
Description: R binding for NNG (Nanomsg Next Gen), a successor to ZeroMQ. NNG is
a socket library implementing 'Scalability Protocols', a reliable,
high-performance standard for common communications patterns including
publish/subscribe, request/reply and service discovery, over in-process,
IPC, TCP, WebSocket and secure TLS transports. As its own threaded
concurrency framework, provides a toolkit for asynchronous programming and
distributed computing, with intuitive 'aio' objects which resolve
automatically upon completion of asynchronous operations, and
synchronisation primitives allowing R to wait upon events signalled by
concurrent threads.
Author: Charlie Gao [aut, cre] ,
Hibiki AI Limited [cph],
R Consortium [fnd]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between nanonext versions 1.2.1 dated 2024-08-19 and 1.3.0 dated 2024-10-04
nanonext-1.2.1/nanonext/man/next_config.Rd |only nanonext-1.2.1/nanonext/man/set_promise_context.Rd |only nanonext-1.2.1/nanonext/src/nng-890d489.tar.xz |only nanonext-1.3.0/nanonext/DESCRIPTION | 11 nanonext-1.3.0/nanonext/MD5 | 74 - nanonext-1.3.0/nanonext/NAMESPACE | 6 nanonext-1.3.0/nanonext/NEWS.md | 16 nanonext-1.3.0/nanonext/R/aio.R | 75 + nanonext-1.3.0/nanonext/R/context.R | 23 nanonext-1.3.0/nanonext/R/ncurl.R | 5 nanonext-1.3.0/nanonext/R/sync.R | 32 nanonext-1.3.0/nanonext/R/tls.R | 2 nanonext-1.3.0/nanonext/R/utils.R | 32 nanonext-1.3.0/nanonext/README.md | 6 nanonext-1.3.0/nanonext/configure | 2 nanonext-1.3.0/nanonext/configure.ucrt | 2 nanonext-1.3.0/nanonext/inst/doc/nanonext.Rmd | 35 nanonext-1.3.0/nanonext/inst/doc/nanonext.html | 224 +-- nanonext-1.3.0/nanonext/man/as.promise.ncurlAio.Rd | 2 nanonext-1.3.0/nanonext/man/as.promise.recvAio.Rd |only nanonext-1.3.0/nanonext/man/dot-dispatcher.Rd |only nanonext-1.3.0/nanonext/man/dot-keep.Rd |only nanonext-1.3.0/nanonext/man/dot-online.Rd |only nanonext-1.3.0/nanonext/man/is_aio.Rd | 10 nanonext-1.3.0/nanonext/man/status_code.Rd | 4 nanonext-1.3.0/nanonext/man/tls_config.Rd | 2 nanonext-1.3.0/nanonext/src/Makevars.win | 6 nanonext-1.3.0/nanonext/src/aio.c | 98 - nanonext-1.3.0/nanonext/src/comms.c | 122 -- nanonext-1.3.0/nanonext/src/core.c | 327 ++--- nanonext-1.3.0/nanonext/src/init.c | 11 nanonext-1.3.0/nanonext/src/nanonext.h | 149 +- nanonext-1.3.0/nanonext/src/ncurl.c | 135 -- nanonext-1.3.0/nanonext/src/nng-b7298cf.tar.xz |only nanonext-1.3.0/nanonext/src/proto.c | 24 nanonext-1.3.0/nanonext/src/sync.c | 111 - nanonext-1.3.0/nanonext/src/thread.c | 408 ++++++ nanonext-1.3.0/nanonext/src/tls.c | 10 nanonext-1.3.0/nanonext/src/utils.c | 110 + nanonext-1.3.0/nanonext/tests/tests.R | 1178 ++++++++++---------- nanonext-1.3.0/nanonext/vignettes/nanonext.Rmd | 35 nanonext-1.3.0/nanonext/vignettes/nanonext.Rmd.orig | 2 42 files changed, 1833 insertions(+), 1456 deletions(-)
Title: Mediation, Moderation and Moderated-Mediation After Model
Fitting
Description: Computes indirect effects, conditional effects, and conditional
indirect effects in a structural equation model or path model after model
fitting, with no need to define any user parameters or label any paths in
the model syntax, using the approach presented in Cheung and Cheung
(2023) <doi:10.3758/s13428-023-02224-z>. Can also form bootstrap
confidence intervals by doing bootstrapping only once and reusing the
bootstrap estimates in all subsequent computations. Supports bootstrap
confidence intervals for standardized (partially or completely) indirect
effects, conditional effects, and conditional indirect effects as described
in Cheung (2009) <doi:10.3758/BRM.41.2.425> and Cheung, Cheung, Lau, Hui,
and Vong (2022) <doi:10.1037/hea0001188>. Model fitting can be done by
structural equation modeling using lavaan() or regression using lm().
Author: Shu Fai Cheung [aut, cre] ,
Sing-Hang Cheung [aut]
Maintainer: Shu Fai Cheung <shufai.cheung@gmail.com>
Diff between manymome versions 0.2.3 dated 2024-09-25 and 0.2.4 dated 2024-10-04
DESCRIPTION | 6 MD5 | 138 ++++----- NAMESPACE | 2 NEWS.md | 86 +++++ R/all_indirect_paths.R | 8 R/boot2est_lm.R | 6 R/check_path.R | 4 R/cond_indirect.R | 10 R/do_boot.R | 8 R/do_mc.R | 6 R/get_b.R | 3 R/get_indirect_effect.R | 71 ++++ R/get_intercept.R | 3 R/get_prod.R | 1 R/index_mome.R | 2 R/indirect.R | 26 + R/indirect_proportion.R | 1 R/lm2ptable.R | 3 R/lm_helpers.R | 10 R/lm_helpers_mod.R | 5 R/mod_levels.R | 9 R/plot_effect_vs_w.R | 2 R/plotmod.R | 147 ++++++++- R/print_cond_indirect_effect.R | 10 R/print_indirect.R | 274 +++++++++++++++++- R/print_indirect_list.R | 30 + R/print_lm_list.R | 2 R/total_indirect_effect_list.R | 32 +- README.md | 12 inst/doc/do_boot.Rmd | 10 inst/doc/do_boot.html | 52 +-- inst/doc/do_mc.Rmd | 6 inst/doc/do_mc.html | 24 - inst/doc/do_mc_lavaan_mi.Rmd | 4 inst/doc/do_mc_lavaan_mi.html | 22 - inst/doc/manymome.Rmd | 17 - inst/doc/manymome.html | 142 +++++---- inst/doc/med_lav.Rmd | 16 - inst/doc/med_lav.html | 164 +++++----- inst/doc/med_lm.Rmd | 24 + inst/doc/med_lm.html | 248 ++++++++-------- inst/doc/mod_levels.html | 6 inst/doc/mome_lm.Rmd | 4 inst/doc/mome_lm.html | 6 man/all_indirect_paths.Rd | 7 man/check_path.Rd | 5 man/cond_indirect.Rd | 5 man/do_boot.Rd | 7 man/get_one_cond_indirect_effect.Rd | 44 ++ man/mod_levels.Rd | 5 man/plot.cond_indirect_effects.Rd | 23 + man/print.indirect.Rd | 115 +++++++ man/print.indirect_list.Rd | 14 man/total_indirect_effect.Rd | 9 tests/testthat/test_all_indirect_paths.R | 5 tests/testthat/test_auto_lm2list.R |only tests/testthat/test_mod_only_kway_print_indirect.R |only tests/testthat/test_mod_only_not_moderated.R | 9 tests/testthat/test_mod_only_plot_vs_w.R | 11 tests/testthat/test_plot_cond_indirect_effects_2ws.R |only tests/testthat/test_plot_indirect_vs_w.R | 9 tests/testthat/test_print_all_cond_indirect_effects.R |only tests/testthat/test_total_indirect_simplified.R |only tests/testthat/test_unmod.R |only vignettes/articles/med_mg.Rmd | 29 + vignettes/do_boot.Rmd | 10 vignettes/do_mc.Rmd | 6 vignettes/do_mc_lavaan_mi.Rmd | 4 vignettes/manymome.Rmd | 17 - vignettes/manymome.Rmd.original | 3 vignettes/med_lav.Rmd | 16 - vignettes/med_lm.Rmd | 24 + vignettes/mome_lm.Rmd | 4 73 files changed, 1534 insertions(+), 509 deletions(-)
Title: Complex Pearson Distributions
Description: Probability mass function, distribution function, quantile function and random generation for the Complex Triparametric Pearson (CTP) and Complex Biparametric Pearson (CBP) distributions developed by Rodriguez-Avi et al (2003) <doi:10.1007/s00362-002-0134-7>, Rodriguez-Avi et al (2004) <doi:10.1007/BF02778271> and Olmo-Jimenez et al (2018) <doi:10.1080/00949655.2018.1482897>. The package also contains maximum-likelihood fitting functions for these models.
Author: Silverio Vilchez-Lopez [aut, cre],
Maria Jose Olmo-Jimenez [aut],
Jose Rodriguez-Avi [aut]
Maintainer: Silverio Vilchez-Lopez <svilchez@ujaen.es>
Diff between cpd versions 0.3.2 dated 2023-09-23 and 0.3.3 dated 2024-10-04
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- R/fitctp.R | 20 +++++++++----------- build/partial.rdb |binary man/cpd.Rd | 2 +- 5 files changed, 19 insertions(+), 21 deletions(-)
Title: 'Blowfish' Key Derivation and Password Hashing
Description: Bindings to the 'blowfish' password hashing algorithm
<https://www.openbsd.org/papers/bcrypt-paper.pdf> derived from
the 'OpenBSD' implementation.
Author: Jeroen Ooms [aut, cre] ,
Damien Miller [cph] ,
Niels Provos [cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between bcrypt versions 1.1 dated 2018-01-26 and 1.2.0 dated 2024-10-04
DESCRIPTION | 32 ++++++++++++++++---------------- MD5 | 21 +++++++++++++-------- NAMESPACE | 2 ++ NEWS | 3 +++ R/bcrypt.R | 6 +++--- R/pbkdf.R |only man/bcrypt.Rd | 4 +++- man/pbkdf.Rd |only src/Makevars | 18 ++++++++++++------ src/bcrypt/bcrypt_pbkdf.c |only src/bcrypt/pybc_sha2.h |only src/bcrypt/sha2.c |only src/bcrypt_r.c | 37 ++++++++++++++++++++++++------------- src/register.c | 20 +++++++++++++++++--- 14 files changed, 93 insertions(+), 50 deletions(-)
Title: Working with Audio and Video in R
Description: Bindings to 'FFmpeg' <http://www.ffmpeg.org/> AV library for working with
audio and video in R. Generates high quality video from images or R graphics with
custom audio. Also offers high performance tools for reading raw audio, creating
'spectrograms', and converting between countless audio / video formats. This package
interfaces directly to the C API and does not require any command line utilities.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between av versions 0.9.1 dated 2024-08-16 and 0.9.2 dated 2024-10-04
DESCRIPTION | 10 +++++----- MD5 | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-)
Title: Extract Text from Microsoft Word Documents
Description: Wraps the 'AntiWord' utility to extract text from Microsoft Word
documents. The utility only supports the old 'doc' format, not the new xml
based 'docx' format. Use the 'xml2' package to read the latter.
Author: Jeroen Ooms [aut, cre] ,
Adri van Os [cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between antiword versions 1.3.3 dated 2024-01-30 and 1.3.4 dated 2024-10-04
DESCRIPTION | 13 +++++++------ MD5 | 2 +- 2 files changed, 8 insertions(+), 7 deletions(-)
Title: Tools for Working with JavaScript in R
Description: A set of utilities for working with JavaScript syntax in R.
Includes tools to parse, tokenize, compile, validate, reformat, optimize
and analyze JavaScript code.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between js versions 1.2 dated 2020-06-03 and 1.2.1 dated 2024-10-04
DESCRIPTION | 12 - MD5 | 20 - R/js_validate.R | 2 build/vignette.rds |binary inst/doc/intro.R | 2 inst/doc/intro.Rmd | 8 inst/doc/intro.html | 485 +++++++++++++++++++++++----------------------- man/js_validate_script.Rd | 2 man/jshint.Rd | 2 man/uglify.Rd | 6 vignettes/intro.Rmd | 8 11 files changed, 281 insertions(+), 266 deletions(-)
Title: JavaScript Object Signing and Encryption
Description: Read and write JSON Web Keys (JWK, rfc7517), generate and verify JSON
Web Signatures (JWS, rfc7515) and encode/decode JSON Web Tokens (JWT, rfc7519)
<https://datatracker.ietf.org/wg/jose/documents/>. These standards provide
modern signing and encryption formats that are natively supported by browsers
via the JavaScript WebCryptoAPI <https://www.w3.org/TR/WebCryptoAPI/#jose>,
and used by services like OAuth 2.0, LetsEncrypt, and Github Apps.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between jose versions 1.2.0 dated 2021-11-06 and 1.2.1 dated 2024-10-04
DESCRIPTION | 23 +- MD5 | 20 +- build/vignette.rds |binary inst/doc/jwk.Rmd | 2 inst/doc/jwk.html | 362 +++++++++++++++++++++++++++++++++++---------- inst/doc/jwt.Rmd | 12 - inst/doc/jwt.html | 419 ++++++++++++++++++++++++++++++++++++++++------------- man/jwt_claim.Rd | 2 man/jwt_encode.Rd | 4 vignettes/jwk.Rmd | 2 vignettes/jwt.Rmd | 12 - 11 files changed, 632 insertions(+), 226 deletions(-)
Title: High-Performance Stemmer, Tokenizer, and Spell Checker
Description: Low level spell checker and morphological analyzer based on the
famous 'hunspell' library <https://hunspell.github.io>. The package can analyze
or check individual words as well as parse text, latex, html or xml documents.
For a more user-friendly interface use the 'spelling' package which builds on
this package to automate checking of files, documentation and vignettes in all
common formats.
Author: Jeroen Ooms [aut, cre],
Authors of libhunspell [cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between hunspell versions 3.0.4 dated 2024-08-19 and 3.0.5 dated 2024-10-04
DESCRIPTION | 10 +++++----- MD5 | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-)
Title: Tools for Managing SSH and Git Credentials
Description: Setup and retrieve HTTPS and SSH credentials for use with 'git' and
other services. For HTTPS remotes the package interfaces the 'git-credential'
utility which 'git' uses to store HTTP usernames and passwords. For SSH
remotes we provide convenient functions to find or generate appropriate SSH
keys. The package both helps the user to setup a local git installation, and
also provides a back-end for git/ssh client libraries to authenticate with
existing user credentials.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between credentials versions 2.0.1 dated 2023-09-06 and 2.0.2 dated 2024-10-04
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- R/credential-helpers.R | 2 +- R/onattach.R | 6 ++++-- build/vignette.rds |binary inst/doc/intro.html | 8 ++++---- 6 files changed, 19 insertions(+), 17 deletions(-)
Title: High Performance CommonMark and Github Markdown Rendering in R
Description: The CommonMark specification <https://github.github.com/gfm/> defines
a rationalized version of markdown syntax. This package uses the 'cmark'
reference implementation for converting markdown text into various formats
including html, latex and groff man. In addition it exposes the markdown
parse tree in xml format. Also includes opt-in support for GFM extensions
including tables, autolinks, and strikethrough text.
Author: Jeroen Ooms [aut, cre] ,
John MacFarlane [cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between commonmark versions 1.9.1 dated 2024-01-30 and 1.9.2 dated 2024-10-04
DESCRIPTION | 26 +++++++++++++------------- MD5 | 2 +- 2 files changed, 14 insertions(+), 14 deletions(-)
Title: Google's Compact Language Detector 2
Description: Bindings to Google's C++ library Compact Language Detector 2
(see <https://github.com/cld2owners/cld2#readme> for more information). Probabilistically
detects over 80 languages in plain text or HTML. For mixed-language input it returns the
top three detected languages and their approximate proportion of the total classified
text bytes (e.g. 80% English and 20% French out of 1000 bytes). There is also a 'cld3'
package on CRAN which uses a neural network model instead.
Author: Jeroen Ooms [aut, cre] ,
Dirk Sites [cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between cld2 versions 1.2.4 dated 2022-10-26 and 1.2.5 dated 2024-10-04
DESCRIPTION | 16 ++++++++-------- MD5 | 4 ++-- src/Makevars | 1 - 3 files changed, 10 insertions(+), 11 deletions(-)
Title: A Compression Format Optimized for the Web
Description: A lossless compressed data format that uses a combination
of the LZ77 algorithm and Huffman coding <https://www.rfc-editor.org/rfc/rfc7932>.
Brotli is similar in speed to deflate (gzip) but offers more dense compression.
Author: Jeroen Ooms [aut, cre] ,
Google, Inc [aut, cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between brotli versions 1.3.0 dated 2022-10-14 and 1.3.1 dated 2024-10-04
DESCRIPTION | 20 +++++++++----------- MD5 | 8 ++++---- build/vignette.rds |binary inst/doc/benchmarks.R | 4 ++-- inst/doc/benchmarks.html | 33 ++++++++++++++------------------- 5 files changed, 29 insertions(+), 36 deletions(-)
Title: Base64 Encoder and Decoder
Description: Compatibility wrapper to replace the orphaned package. New
applications should use base64 encoders from 'jsonlite' or 'openssl' or
'base64enc'.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between base64 versions 2.0.1 dated 2022-08-19 and 2.0.2 dated 2024-10-04
DESCRIPTION | 11 ++++++----- MD5 | 4 ++-- build/partial.rdb |binary 3 files changed, 8 insertions(+), 7 deletions(-)
Title: A Modern and Easy-to-Use Crypto Library
Description: Bindings to 'libsodium' <https://doc.libsodium.org/>: a modern,
easy-to-use software library for encryption, decryption, signatures, password
hashing and more. Sodium uses curve25519, a state-of-the-art Diffie-Hellman
function by Daniel Bernstein, which has become very popular after it was
discovered that the NSA had backdoored Dual EC DRBG.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between sodium versions 1.3.1 dated 2023-11-20 and 1.3.2 dated 2024-10-04
DESCRIPTION | 10 +++++----- MD5 | 20 ++++++++++---------- NAMESPACE | 2 ++ R/stream.R | 11 +++++++++++ build/vignette.rds |binary inst/doc/crypto101.html | 20 +++++++++----------- inst/doc/crypto101.rmd | 2 +- inst/doc/intro.html | 12 ++++++------ man/stream.Rd | 4 ++++ src/stream.c | 11 +++++++++++ vignettes/crypto101.rmd | 2 +- 11 files changed, 60 insertions(+), 34 deletions(-)
Title: Database Interface and 'MySQL' Driver for R
Description: Legacy 'DBI' interface to 'MySQL' / 'MariaDB' based on old code
ported from S-PLUS. A modern 'MySQL' client written in 'C++' is available
from the 'RMariaDB' package.
Author: Jeroen Ooms [aut, cre] ,
David James [aut],
Saikat DebRoy [aut],
Hadley Wickham [aut],
Jeffrey Horner [aut],
RStudio [cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between RMySQL versions 0.10.28 dated 2024-08-22 and 0.10.29 dated 2024-10-04
DESCRIPTION | 12 ++++++------ MD5 | 2 +- 2 files changed, 7 insertions(+), 7 deletions(-)
Title: Split, Combine and Compress PDF Files
Description: Content-preserving transformations transformations of PDF files such
as split, combine, and compress. This package interfaces directly to the 'qpdf'
C++ library <https://qpdf.sourceforge.io/> and does not require any command
line utilities. Note that 'qpdf' does not read actual content from PDF files:
to extract text and data you need the 'pdftools' package.
Author: Jeroen Ooms [aut, cre] ,
Ben Raymond [ctb],
Jay Berkenbilt [cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between qpdf versions 1.3.3 dated 2024-03-25 and 1.3.4 dated 2024-10-04
DESCRIPTION | 17 ++++++++--------- MD5 | 2 +- 2 files changed, 9 insertions(+), 10 deletions(-)
Title: Highly Optimized Protocol Buffer Serializers
Description: Pure C++ implementations for reading and writing several common data
formats based on Google protocol-buffers. Currently supports 'rexp.proto' for
serialized R objects, 'geobuf.proto' for binary geojson, and 'mvt.proto' for
vector tiles. This package uses the auto-generated C++ code by protobuf-compiler,
hence the entire serialization is optimized at compile time. The 'RProtoBuf'
package on the other hand uses the protobuf runtime library to provide a general-
purpose toolkit for reading and writing arbitrary protocol-buffer data in R.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between protolite versions 2.3.0 dated 2023-09-25 and 2.3.1 dated 2024-10-04
DESCRIPTION | 12 +++++++----- MD5 | 4 ++-- configure | 2 +- 3 files changed, 10 insertions(+), 8 deletions(-)
Title: Server-Side Syntax Highlighting
Description: Prism <https://prismjs.com/> is a lightweight, extensible syntax
highlighter, built with modern web standards in mind. This package provides
server-side rendering in R using 'V8' such that no JavaScript library is
required in the resulting HTML documents. Over 400 languages are supported.
Author: Jeroen Ooms [aut, cre] ,
Lea Verou [cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between prismjs versions 2.0.0 dated 2024-06-04 and 2.0.1 dated 2024-10-04
DESCRIPTION | 10 +++++----- MD5 | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-)
Title: Producing and Reproducing Results
Description: A system for embedded scientific computing and reproducible research with R.
The OpenCPU server exposes a simple but powerful HTTP api for RPC and data interchange
with R. This provides a reliable and scalable foundation for statistical services or
building R web applications. The OpenCPU server runs either as a single-user development
server within the interactive R session, or as a multi-user Linux stack based on Apache2.
The entire system is fully open source and permissively licensed. The OpenCPU website
has detailed documentation and example apps.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between opencpu versions 2.2.13 dated 2024-08-16 and 2.2.14 dated 2024-10-04
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- inst/doc/opencpu-paper.pdf |binary 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Fast and Simple 'MongoDB' Client for R
Description: High-performance MongoDB client based on 'mongo-c-driver' and 'jsonlite'.
Includes support for aggregation, indexing, map-reduce, streaming, encryption,
enterprise authentication, and GridFS. The online user manual provides an overview
of the available methods in the package: <https://jeroen.github.io/mongolite/>.
Author: Jeroen Ooms [aut, cre] ,
MongoDB, Inc [cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between mongolite versions 2.8.0 dated 2024-04-24 and 2.8.1 dated 2024-10-04
DESCRIPTION | 11 +++++------ MD5 | 2 +- 2 files changed, 6 insertions(+), 7 deletions(-)
Title: JSON for Linking Data
Description: JSON-LD <https://www.w3.org/TR/json-ld/> is a light-weight syntax for
expressing linked data. It is primarily intended for web-based programming
environments, interoperable web services and for storing linked data in
JSON-based databases. This package provides bindings to the JavaScript
library for converting, expanding and compacting JSON-LD documents.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between jsonld versions 2.2 dated 2020-05-27 and 2.2.1 dated 2024-10-04
DESCRIPTION | 31 ++++++++++++++----------------- MD5 | 2 +- 2 files changed, 15 insertions(+), 18 deletions(-)
Title: Client for 'jq', a 'JSON' Processor
Description: Client for 'jq', a 'JSON' processor (<https://jqlang.github.io/jq/>),
written in C. 'jq' allows the following with 'JSON' data: index into, parse,
do calculations, cut up and filter, change key names and values, perform
conditionals and comparisons, and more.
Author: Rich FitzJohn [aut],
Jeroen Ooms [aut, cre],
Scott Chamberlain [aut],
Stefan Milton Bache [aut]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between jqr versions 1.3.4 dated 2024-08-16 and 1.3.5 dated 2024-10-04
DESCRIPTION | 13 ++++++------- MD5 | 6 +++--- configure | 2 +- man/jqr.Rd | 2 +- 4 files changed, 11 insertions(+), 12 deletions(-)
Title: Response Item Networks
Description: Contains various tools to perform and visualize Response Item Networks ('ResIN's'). 'ResIN' binarizes ordered-categorical and qualitative response choices from (survey) data, calculates pairwise associations and maps the location of each item response as a node in a force-directed network. Please refer to <https://www.resinmethod.net/> for more details.
Author: Philip Warncke [cre, aut],
Dino Carpentras [aut],
Adrian Lueders [aut]
Maintainer: Philip Warncke <pwarncke@live.unc.edu>
Diff between ResIN versions 1.1.0 dated 2023-06-30 and 2.0.0 dated 2024-10-04
ResIN-1.1.0/ResIN/R/ResIN_igraph.R |only ResIN-1.1.0/ResIN/R/ResIN_qgraph.R |only ResIN-1.1.0/ResIN/R/ResIN_utils.R |only ResIN-1.1.0/ResIN/man/ResIN_igraph.Rd |only ResIN-1.1.0/ResIN/man/ResIN_qgraph.Rd |only ResIN-1.1.0/ResIN/man/ResIN_utils.Rd |only ResIN-2.0.0/ResIN/DESCRIPTION | 17 ResIN-2.0.0/ResIN/MD5 | 58 + ResIN-2.0.0/ResIN/NAMESPACE | 94 +- ResIN-2.0.0/ResIN/R/Boostrap_example.R |only ResIN-2.0.0/ResIN/R/BrJSocPsychol_2024.R |only ResIN-2.0.0/ResIN/R/ResIN.R | 814 ++++++++++++++-------- ResIN-2.0.0/ResIN/R/ResIN_boots_execute.R |only ResIN-2.0.0/ResIN/R/ResIN_boots_extract.R |only ResIN-2.0.0/ResIN/R/ResIN_boots_prepare.R |only ResIN-2.0.0/ResIN/R/ResIN_to_gephi.R |only ResIN-2.0.0/ResIN/R/ResIN_to_igraph.R |only ResIN-2.0.0/ResIN/R/ResIN_to_qgraph.R |only ResIN-2.0.0/ResIN/R/lik_data.R | 42 - ResIN-2.0.0/ResIN/README.md | 34 ResIN-2.0.0/ResIN/data/Bootstrap_example.rda |only ResIN-2.0.0/ResIN/data/BrJSocPsychol_2024.RData |only ResIN-2.0.0/ResIN/data/lik_data.RData |binary ResIN-2.0.0/ResIN/inst/doc/ResIN-VIGNETTE.R | 336 +++++++-- ResIN-2.0.0/ResIN/inst/doc/ResIN-VIGNETTE.Rmd | 428 ++++++++++- ResIN-2.0.0/ResIN/inst/doc/ResIN-VIGNETTE.html | 695 ++++++++++++++++-- ResIN-2.0.0/ResIN/man/Bootstrap_example.Rd |only ResIN-2.0.0/ResIN/man/BrJSocPsychol_2024.Rd |only ResIN-2.0.0/ResIN/man/ResIN.Rd | 96 +- ResIN-2.0.0/ResIN/man/ResIN_boots_execute.Rd |only ResIN-2.0.0/ResIN/man/ResIN_boots_extract.Rd |only ResIN-2.0.0/ResIN/man/ResIN_boots_prepare.Rd |only ResIN-2.0.0/ResIN/man/ResIN_to_gephi.Rd |only ResIN-2.0.0/ResIN/man/ResIN_to_igraph.Rd |only ResIN-2.0.0/ResIN/man/ResIN_to_qgraph.Rd |only ResIN-2.0.0/ResIN/man/figures |only ResIN-2.0.0/ResIN/vignettes/ResIN-VIGNETTE.Rmd | 428 ++++++++++- ResIN-2.0.0/ResIN/vignettes/file259076026d09.html |only ResIN-2.0.0/ResIN/vignettes/file260c40b97f18.html |only ResIN-2.0.0/ResIN/vignettes/file2df85106792.html |only ResIN-2.0.0/ResIN/vignettes/file31882fa26c3c.html |only ResIN-2.0.0/ResIN/vignettes/file432821cf52de.html |only ResIN-2.0.0/ResIN/vignettes/file440447c625a0.html |only ResIN-2.0.0/ResIN/vignettes/file46383a0b1d91.html |only ResIN-2.0.0/ResIN/vignettes/file4f2848d7e1e.html |only ResIN-2.0.0/ResIN/vignettes/file51c8f3d30b2.html |only ResIN-2.0.0/ResIN/vignettes/file584451b13089.html |only ResIN-2.0.0/ResIN/vignettes/file5dbc483917fb.html |only 48 files changed, 2353 insertions(+), 689 deletions(-)
Title: Variance Stabilization by Data-Driven Haar-Fisz (for
Microarrays)
Description: Contains the normalizing and variance stabilizing
Data-Driven Haar-Fisz algorithm. Also contains related algorithms
for simulating from certain microarray gene intensity models and
evaluation of certain transformations. Contains cDNA and shipping
credit flow data.
Author: Efthimios Motakis [aut],
Guy Nason [aut, cre],
Piotr Fryzlewicz [aut]
Maintainer: Guy Nason <g.nason@imperial.ac.uk>
Diff between DDHFm versions 1.1.3 dated 2022-11-25 and 1.1.4 dated 2024-10-04
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- build/vignette.rds |binary data/ShipCreditFlow.rda |binary data/cdna.rda |binary inst/CHANGES | 2 ++ inst/doc/DDHFm.pdf |binary src/DDHFm.c | 48 ++++++++++++++++++++++++++---------------------- 8 files changed, 39 insertions(+), 33 deletions(-)
Title: A New Format for Lossless and Lossy Image Compression
Description: Lossless webp images are 26% smaller in size compared to PNG. Lossy
webp images are 25-34% smaller in size compared to JPEG. This package reads
and writes webp images into a 3 (rgb) or 4 (rgba) channel bitmap array using
conventions from the 'jpeg' and 'png' packages.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between webp versions 1.2.0 dated 2023-09-26 and 1.2.1 dated 2024-10-04
DESCRIPTION | 12 +++++++----- MD5 | 2 +- 2 files changed, 8 insertions(+), 6 deletions(-)
Title: POSIX System Utilities
Description: Bindings to system utilities found in most Unix systems such as
POSIX functions which are not part of the Standard C Library.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between unix versions 1.5.8 dated 2024-05-14 and 1.5.9 dated 2024-10-04
DESCRIPTION | 10 +++++----- MD5 | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-)
Title: Powerful and Reliable Tools for Running System Commands in R
Description: Drop-in replacements for the base system2() function with fine control
and consistent behavior across platforms. Supports clean interruption, timeout,
background tasks, and streaming STDIN / STDOUT / STDERR over binary or text
connections. Arguments on Windows automatically get encoded and quoted to work
on different locales.
Author: Jeroen Ooms [aut, cre] ,
Gabor Csardi [ctb]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between sys versions 3.4.2 dated 2023-05-23 and 3.4.3 dated 2024-10-04
DESCRIPTION | 10 +++++----- MD5 | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-)
Title: Survival Analysis in Health Economic Evaluation
Description: Contains a suite of functions for survival analysis in health economics.
These can be used to run survival models under a frequentist (based on maximum likelihood)
or a Bayesian approach (both based on Integrated Nested Laplace Approximation or Hamiltonian
Monte Carlo). To run the Bayesian models, the user needs to install additional modules
(packages), i.e. 'survHEinla' and 'survHEhmc'. These can be installed using
'remotes::install_github' from their GitHub repositories:
(<https://github.com/giabaio/survHEhmc> and <https://github.com/giabaio/survHEinla/>
respectively). 'survHEinla' is based on the package INLA, which is available for download at
<https://inla.r-inla-download.org/R/stable/>. The user can specify a set of parametric models
using a common notation and select the preferred mode of inference. The results can also be
post-processed to produce probabilistic sensitivity analysis and can be used to export the
output to an Excel file (e.g. for a Markov model, [...truncated...]
Author: Gianluca Baio [aut, cre],
Andrea Berardi [ctb],
Philip Cooney [ctb],
Andrew Jones [ctb],
Nathan Green [ctb]
Maintainer: Gianluca Baio <g.baio@ucl.ac.uk>
Diff between survHE versions 2.0.1 dated 2023-03-19 and 2.0.2 dated 2024-10-04
DESCRIPTION | 15 ++++---- MD5 | 21 +++++++----- NAMESPACE | 4 +- NEWS.md | 24 ++++++++++++++ R/global.R | 2 - R/summary.survHE.R | 2 - R/survHE-package.R | 40 ++--------------------- R/utils_make_surv.R | 15 ++++---- R/utils_plot_survHE.R | 84 +++++++++++++++++++++++++++++++++++++++++++++----- README.md |only build |only man/make_newdata.Rd |only man/survHE-package.Rd | 54 +++++++++++--------------------- 13 files changed, 158 insertions(+), 103 deletions(-)
Title: Profile R Code and Visualize with 'Pprof'
Description: Like similar profiling tools,
the 'proffer' package automatically detects
sources of slowness in R code.
The distinguishing feature of 'proffer' is its utilization of
'pprof', which supplies interactive visualizations
that are efficient and easy to interpret.
Behind the scenes, the 'profile' package converts
native Rprof() data to a protocol buffer
that 'pprof' understands.
For the documentation of 'proffer',
visit <https://r-prof.github.io/proffer/>.
To learn about the implementations and methodologies of
'pprof', 'profile', and protocol buffers,
visit <https://github.com/google/pprof>.
<https://protobuf.dev>,
and <https://github.com/r-prof/profile>, respectively.
Author: William Michael Landau [aut, cre]
,
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between proffer versions 0.1.6 dated 2023-02-01 and 0.2.0 dated 2024-10-04
proffer-0.1.6/proffer/tests/testthat/test-interactive.R |only proffer-0.1.6/proffer/tests/testthat/test-zzz-install.R |only proffer-0.2.0/proffer/DESCRIPTION | 14 - proffer-0.2.0/proffer/MD5 | 32 +- proffer-0.2.0/proffer/NEWS.md | 8 proffer-0.2.0/proffer/R/install.R | 107 +-------- proffer-0.2.0/proffer/R/package.R | 1 proffer-0.2.0/proffer/R/path.R | 57 ---- proffer-0.2.0/proffer/R/pprof.R | 29 +- proffer-0.2.0/proffer/R/sitrep.R | 186 ---------------- proffer-0.2.0/proffer/inst/WORDLIST | 1 proffer-0.2.0/proffer/man/install_go.Rd | 34 -- proffer-0.2.0/proffer/man/pprof_path.Rd | 12 - proffer-0.2.0/proffer/man/proffer-package.Rd | 1 proffer-0.2.0/proffer/tests/local |only proffer-0.2.0/proffer/tests/testthat/test-install.R |only proffer-0.2.0/proffer/tests/testthat/test-path.R | 29 -- proffer-0.2.0/proffer/tests/testthat/test-profile.R | 3 proffer-0.2.0/proffer/tests/testthat/test-sitrep.R | 20 - 19 files changed, 82 insertions(+), 452 deletions(-)
Title: Authenticate as a 'GitHub' App
Description: 'GitHub' apps provide a powerful way to manage fine grained
programmatic access to specific 'git' repositories, without having to
create dummy users, and which are safer than a personal access token
for automated tasks. This package extends the 'gh' package to let you
authenticate and interact with 'GitHub' <https://docs.github.com/en/rest/overview>
in 'R' as an app.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between ghapps versions 1.1.0 dated 2024-08-16 and 1.1.1 dated 2024-10-04
DESCRIPTION | 10 +++++----- MD5 | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-)
Title: Resampling Methods for Triangular and Trapezoidal Fuzzy Numbers
Description: The classical (i.e. Efron's, see Efron and Tibshirani (1994, ISBN:978-0412042317) "An Introduction to the Bootstrap") bootstrap is widely used for both the real (i.e. "crisp") and fuzzy data.
The main aim of the algorithms implemented in this package is to overcome a problem with repetition of a few distinct values and to create fuzzy numbers, which are "similar" (but not the same) to values from the initial sample.
To do this, different characteristics of triangular/trapezoidal numbers are kept (like the value, the ambiguity, etc., see Grzegorzewski et al. <doi:10.2991/eusflat-19.2019.68>, Grzegorzewski et al. (2020) <doi:10.2991/ijcis.d.201012.003>, Grzegorzewski et al. (2020) <doi:10.34768/amcs-2020-0022>, Grzegorzewski and Romaniuk (2022) <doi:10.1007/978-3-030-95929-6_3>, Romaniuk and Hryniewicz (2019) <doi:10.1007/s00500-018-3251-5>).
Some additional procedures related to these resampling methods are also provided,
like calculation of the Bertoluz [...truncated...]
Author: Maciej Romaniuk [aut, cre],
Przemyslaw Grzegorzewski [aut],
Olgierd Hryniewicz [aut]
Maintainer: Maciej Romaniuk <mroman@ibspan.waw.pl>
Diff between FuzzyResampling versions 0.6.3 dated 2023-11-22 and 0.6.4 dated 2024-10-04
DESCRIPTION | 11 ++++++----- MD5 | 20 ++++++++++++-------- build/partial.rdb |binary build/vignette.rds |only inst/doc |only man/CalculateAmbiguityL.Rd | 2 +- man/CalculateAmbiguityR.Rd | 2 +- man/CalculateExpValue.Rd | 2 +- man/CalculateFuzziness.Rd | 2 +- man/CalculateValue.Rd | 2 +- man/CalculateWidth.Rd | 2 +- vignettes |only 12 files changed, 24 insertions(+), 19 deletions(-)
More information about FuzzyResampling at CRAN
Permanent link
Title: Read and Play Digital Music (MIDI)
Description: Bindings to 'libfluidsynth' to parse and synthesize MIDI files. It can
read MIDI into a data frame, play it on the local audio device, or convert into
an audio file.
Author: Jeroen Ooms [aut, cre] ,
S. Christian Collins [cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between fluidsynth versions 1.0.1 dated 2024-08-16 and 1.0.2 dated 2024-10-04
DESCRIPTION | 10 +++++----- MD5 | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-)
Title: Fast Alternatives to 'tidyverse' Functions
Description: A full set of fast data manipulation tools with a tidy
front-end and a fast back-end using 'collapse' and 'cheapr'.
Author: Nick Christofides [aut, cre]
Maintainer: Nick Christofides <nick.christofides.r@gmail.com>
Diff between fastplyr versions 0.1.0 dated 2024-09-12 and 0.2.0 dated 2024-10-04
DESCRIPTION | 9 - MD5 | 57 ++++---- NAMESPACE | 3 NEWS.md | 22 +++ R/GRP_utils.R | 56 +++++--- R/abc.R | 6 R/cpp11.R | 8 + R/df_utils.R | 2 R/f_arrange.R | 120 ++++++++--------- R/f_bind.R | 105 +++++++++++---- R/f_consecutive_id.R |only R/f_distinct.R | 2 R/f_duplicates.R | 2 R/f_filter.R | 49 +++---- R/f_join.R | 78 ++++++++--- R/f_rowwise.R |only R/f_slice.R | 5 R/f_summarise.R | 20 ++ R/f_tibble.R | 2 R/group_id.R | 10 + R/reconstruct.R | 188 +++++++++++++------------- R/tidy_quantiles.R | 21 ++- README.md | 97 +++++++------ man/f_bind_rows.Rd | 12 + man/f_consecutive_id.Rd |only man/f_slice.Rd | 5 man/f_summarise.Rd | 1 man/fastplyr-package.Rd | 69 +++++---- src/cpp11.cpp | 16 ++ src/fastplyr.cpp | 336 +++++++++++++++++++++++++++++++++++++++++------- src/fastplyr.h | 4 31 files changed, 891 insertions(+), 414 deletions(-)
Title: Corbae-Ouliaris Frequency Domain Filtering
Description: Corbae-Ouliaris frequency domain filtering. According to
Corbae and Ouliaris (2006) <doi:10.1017/CBO9781139164863.008>,
this is a solution for extracting cycles from time series, like
business cycles etc. when filtering. This method is valid for both
stationary and non-stationary time series.
Author: Christos Adam [aut, cre]
Maintainer: Christos Adam <econp266@econ.soc.uoc.gr>
Diff between corbouli versions 0.1.1 dated 2024-09-25 and 0.1.2 dated 2024-10-04
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 13 +++++++++++++ R/corbae_ouliaris.R | 8 ++++---- README.md | 10 +++++----- inst/doc/Introduction.Rmd | 4 ++-- inst/doc/Introduction.html | 4 ++-- vignettes/Introduction.Rmd | 4 ++-- 8 files changed, 38 insertions(+), 25 deletions(-)
Title: Bayesian Solutions for the Factor Zoo: We Just Ran Two
Quadrillion Models
Description: Contains the functions to use the econometric methods in the paper Bryzgalova, Huang, and Julliard (2023) <doi:10.1111/jofi.13197>. In this package, we provide a novel Bayesian framework for analyzing linear asset pricing models: simple, robust, and applicable to high-dimensional problems. For a stand-alone model, we provide functions including BayesianFM() and BayesianSDF() to deliver reliable price of risk estimates for both tradable and nontradable factors. For competing factors and possibly nonnested models, we provide functions including continuous_ss_sdf(), continuous_ss_sdf_v2(), and dirac_ss_sdf_pvalue() to analyze high-dimensional models. If you use this package, please cite the paper. We are thankful to Yunan Ding and Jingtong Zhang for their research assistance. Any errors or omissions are the responsibility of the authors.
Author: Svetlana Bryzgalova [aut],
Jiantao Huang [cre],
Christian Julliard [aut]
Maintainer: Jiantao Huang <huangjt@hku.hk>
Diff between BayesianFactorZoo versions 0.0.0.2 dated 2023-11-14 and 0.0.0.3 dated 2024-10-04
DESCRIPTION | 8 +-- MD5 | 14 ++--- R/continuous_ss_sdf.R | 105 ++++++++++++++++++++++++++++++++++++------- R/continuous_ss_sdf_v2.R | 79 ++++++++++++++++++++++++++------ build/partial.rdb |binary data/BFactor_zoo_example.rda |binary man/continuous_ss_sdf.Rd | 14 ++++- man/continuous_ss_sdf_v2.Rd | 11 +++- 8 files changed, 182 insertions(+), 49 deletions(-)
More information about BayesianFactorZoo at CRAN
Permanent link
Title: Fast and Simple Badge Generator
Description: Bindings to 'badgen' <https://www.npmjs.com/package/badgen> to
generate beautiful 'svg' badges in R without internet access. Images can
be converted to 'png' using the 'rsvg' package as shown in examples.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between badgen versions 1.0.0 dated 2023-07-19 and 1.0.1 dated 2024-10-04
DESCRIPTION | 12 ++++++------ MD5 | 2 +- 2 files changed, 7 insertions(+), 7 deletions(-)
Title: Export Data Frames to Excel 'xlsx' Format
Description: Zero-dependency data frame to xlsx exporter based on 'libxlsxwriter'
<https://libxlsxwriter.github.io>. Fast and no Java or Excel required.
Author: Jeroen Ooms [aut, cre] ,
John McNamara [cph] )
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between writexl versions 1.5.0 dated 2024-02-09 and 1.5.1 dated 2024-10-04
DESCRIPTION | 19 +++++++++---------- MD5 | 2 +- 2 files changed, 10 insertions(+), 11 deletions(-)
Title: Utility Functions for Developing Web Applications
Description: Parses http request data in application/json, multipart/form-data,
or application/x-www-form-urlencoded format. Includes example of hosting
and parsing html form data in R using either 'httpuv' or 'Rhttpd'.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between webutils versions 1.2.1 dated 2024-08-21 and 1.2.2 dated 2024-10-04
DESCRIPTION | 10 +++++----- MD5 | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-)
Title: Extract Text from Rich Text Format (RTF) Documents
Description: Wraps the 'unrtf' utility <https://www.gnu.org/software/unrtf/> to
extract text from RTF files. Supports document conversion to HTML, LaTeX or
plain text. Output in HTML is recommended because 'unrtf' has limited
support for converting between character encodings.
Author: Jeroen Ooms [aut, cre],
Free Software Foundation, Inc [cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between unrtf versions 1.4.5 dated 2024-01-30 and 1.4.6 dated 2024-10-04
DESCRIPTION | 10 +++++----- MD5 | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-)
Title: R Bindings for 'ZeroMQ'
Description: Interface to the 'ZeroMQ' lightweight messaging kernel (see <https://zeromq.org/> for more information).
Author: Whit Armstrong [aut],
Michael Schubert [ctb],
Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between rzmq versions 0.9.13 dated 2024-04-14 and 0.9.14 dated 2024-10-04
DESCRIPTION | 10 +++++----- MD5 | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-)
Title: Read 'Bibtex' Files and Convert Between Bibliography Formats
Description: Read and write 'Bibtex' files. Convert between bibliography
formats, including 'Bibtex', 'Biblatex', 'PubMed', 'Endnote', and
'Bibentry'. Includes a port of the 'bibutils' utilities by Chris
Putnam <https://sourceforge.net/projects/bibutils/>. Supports all
bibliography formats and character encodings implemented in
'bibutils'.
Author: Georgi N. Boshnakov [aut, cre] ),
Chris Putman [aut] ,
Richard Mathar [ctb] ,
Johannes Wilm [ctb] ,
R Core Team [ctb]
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between rbibutils versions 2.2.16 dated 2023-10-25 and 2.3 dated 2024-10-04
rbibutils-2.2.16/rbibutils/TODO |only rbibutils-2.3/rbibutils/DESCRIPTION | 15 rbibutils-2.3/rbibutils/MD5 | 94 rbibutils-2.3/rbibutils/NAMESPACE | 59 rbibutils-2.3/rbibutils/NEWS.md | 726 ++--- rbibutils-2.3/rbibutils/R/bib.R | 532 ++-- rbibutils-2.3/rbibutils/R/bibentry.R | 1316 +++++----- rbibutils-2.3/rbibutils/R/zzz.R |only rbibutils-2.3/rbibutils/build/partial.rdb |binary rbibutils-2.3/rbibutils/build/vignette.rds |only rbibutils-2.3/rbibutils/inst/bib/WuertzEtalGarch.bib |only rbibutils-2.3/rbibutils/inst/bib/latin1accents_utf8.bib | 18 rbibutils-2.3/rbibutils/inst/doc |only rbibutils-2.3/rbibutils/man/bibConvert.Rd | 636 ++-- rbibutils-2.3/rbibutils/man/bibentryExtra.Rd |only rbibutils-2.3/rbibutils/man/rbibutils-package.Rd | 410 +-- rbibutils-2.3/rbibutils/man/rbibutils_formats.Rd | 97 rbibutils-2.3/rbibutils/man/readBib.Rd | 542 ++-- rbibutils-2.3/rbibutils/man/readBibentry.Rd | 195 - rbibutils-2.3/rbibutils/man/register_JSSextra.Rd | 195 - rbibutils-2.3/rbibutils/src/bibentrydirectout.c | 358 +- rbibutils-2.3/rbibutils/src/bibentryout.c | 6 rbibutils-2.3/rbibutils/src/bibtexout.c | 3 rbibutils-2.3/rbibutils/src/common_bt_blt_btd_out.c | 3 rbibutils-2.3/rbibutils/src/common_bt_blt_btd_out.h | 39 rbibutils-2.3/rbibutils/src/common_bt_btd.c | 1 rbibutils-2.3/rbibutils/src/common_bt_btd_blt.h | 1 rbibutils-2.3/rbibutils/src/common_bt_btd_out.c | 2 rbibutils-2.3/rbibutils/src/name.c | 566 ++-- rbibutils-2.3/rbibutils/tests/testthat/acc_fn.rds |binary rbibutils-2.3/rbibutils/tests/testthat/bib2R.rds |binary rbibutils-2.3/rbibutils/tests/testthat/bib2rds.rds |binary rbibutils-2.3/rbibutils/tests/testthat/bibacc_1.rds |binary rbibutils-2.3/rbibutils/tests/testthat/bibacc_2.rds |binary rbibutils-2.3/rbibutils/tests/testthat/bibacc_3.rds |binary rbibutils-2.3/rbibutils/tests/testthat/eaf_Grunert01.rds |binary rbibutils-2.3/rbibutils/tests/testthat/issue_5_utf8.rds |binary rbibutils-2.3/rbibutils/tests/testthat/issue_5a.rds |binary rbibutils-2.3/rbibutils/tests/testthat/issue_5rdpack.rds |binary rbibutils-2.3/rbibutils/tests/testthat/test-bib.R | 632 ++-- rbibutils-2.3/rbibutils/tests/testthat/test-bibentryExtra.R |only rbibutils-2.3/rbibutils/tests/testthat/test-bibstyleExtra.R | 90 rbibutils-2.3/rbibutils/tests/testthat/test-convert.R | 898 +++--- rbibutils-2.3/rbibutils/tests/testthat/texChars_converted.rds |binary rbibutils-2.3/rbibutils/tests/testthat/texChars_exported.rds |binary rbibutils-2.3/rbibutils/tests/testthat/texChars_kept.rds |binary rbibutils-2.3/rbibutils/tests/testthat/xampl_1.rds |binary rbibutils-2.3/rbibutils/tests/testthat/xampl_1.rds_sav |only rbibutils-2.3/rbibutils/tests/testthat/xampl_bbl2bib.rds |binary rbibutils-2.3/rbibutils/tests/testthat/xampl_isi2bib.rds |binary rbibutils-2.3/rbibutils/vignettes |only 51 files changed, 3890 insertions(+), 3544 deletions(-)
Title: Bindings to 'OpenCV' Computer Vision Library
Description: Exposes some of the available 'OpenCV' <https://opencv.org/> algorithms,
such as a QR code scanner, and edge, body or face detection. These can either be
applied to analyze static images, or to filter live video footage from a camera device.
Author: Jeroen Ooms [aut, cre] ,
Jan Wijffels [aut]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between opencv versions 0.4.0 dated 2023-10-29 and 0.4.1 dated 2024-10-04
DESCRIPTION | 13 +++++++------ MD5 | 8 ++++---- src/opencv_types.h | 4 ++++ src/qrdetect.cpp | 23 +++++++++++++++++++---- tests/testthat/test-qr_code.R | 2 +- 5 files changed, 35 insertions(+), 15 deletions(-)
Title: Exploring and Testing the Toolchain and System Libraries
Description: Helper functions that interface with the system utilities to learn
about the local build environment. Lets you explore 'make' rules to test the
local configuration, or query 'pkg-config' to find compiler flags and libs
needed for building packages with external dependencies. Also contains tools
to analyze which libraries that a installed R package linked to by inspecting
output from 'ldd' in combination with information from your distribution
package manager, e.g. 'rpm' or 'dpkg'.
Author: Jeroen Ooms [aut, cre, cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between maketools versions 1.3.0 dated 2024-02-25 and 1.3.1 dated 2024-10-04
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- R/sysdeps.R | 4 ++++ build/vignette.rds |binary 4 files changed, 12 insertions(+), 8 deletions(-)
Title: Transformation Models
Description: Formula-based user-interfaces to specific transformation models
implemented in package 'mlt'. Available models include Cox models, some parametric
survival models (Weibull, etc.), models for ordered categorical variables,
normal and non-normal (Box-Cox type) linear models, and continuous outcome logistic regression
(Lohse et al., 2017, <DOI:10.12688/f1000research.12934.1>). The underlying theory
is described in Hothorn et al. (2018) <DOI:10.1111/sjos.12291>. An extension to
transformation models for clustered data is provided (Barbanti and Hothorn, 2022,
<DOI:10.1093/biostatistics/kxac048>). Multivariate conditional transformation models
(Klein et al, 2022, <DOI:10.1111/sjos.12501>) and shift-scale transformation models (Siegfried et al, 2023,
<DOI:10.1080/00031305.2023.2203177>) can be fitted as well.
Author: Torsten Hothorn [aut, cre] ,
Luisa Barbanti [aut] ,
Sandra Siegfried [aut] ,
Brian Ripley [ctb],
Bill Venables [ctb],
Douglas M. Bates [ctb],
Nadja Klein [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between tram versions 1.1-1 dated 2024-09-27 and 1.1-2 dated 2024-10-04
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ inst/NEWS.Rd | 6 ++++++ inst/doc/mtram.pdf |binary inst/doc/tram.pdf |binary tests/mmlt-Ex.R | 20 ++++++++++---------- tests/mmlt-Ex.Rout.save | 22 +++++++++++----------- 7 files changed, 37 insertions(+), 31 deletions(-)
Title: Perform Structural Missing Data Investigations
Description: An easy to use implementation of routine structural missing data diagnostics with functions to visualize the proportions of missing observations, investigate missing data patterns and conduct various empirical missing data diagnostic tests. Reference: Weberpals J, Raman SR, Shaw PA, Lee H, Hammill BG, Toh S, Connolly JG, Dandreo KJ, Tian F, Liu W, Li J, Hernández-Muñoz JJ, Glynn RJ, Desai RJ. smdi: an R package to perform structural missing data investigations on partially observed confounders in real-world evidence studies. JAMIA Open. 2024 Jan 31;7(1):ooae008. <doi:10.1093/jamiaopen/ooae008>.
Author: Janick Weberpals [aut, cre, cph]
Maintainer: Janick Weberpals <janick.developer@gmail.com>
Diff between smdi versions 0.3.0 dated 2024-07-25 and 0.3.1 dated 2024-10-04
DESCRIPTION | 12 MD5 | 22 NEWS.md | 8 inst/doc/a_data_generation.R | 49 inst/doc/a_data_generation.Rmd | 41 inst/doc/a_data_generation.html | 3394 ++-------------------------- inst/doc/b_routine_diagnostics.html | 25 inst/doc/c_multivariate_missingness.html | 107 inst/doc/d_narfcs_sensitivity_analysis.html | 25 inst/doc/smdi.html | 25 man/smdi-package.Rd | 2 vignettes/a_data_generation.Rmd | 41 12 files changed, 477 insertions(+), 3274 deletions(-)
Title: Password Entry Utilities for R, Git, and SSH
Description: Cross-platform utilities for prompting the user for credentials or a
passphrase, for example to authenticate with a server or read a protected key.
Includes native programs for MacOS and Windows, hence no 'tcltk' is required.
Password entry can be invoked in two different ways: directly from R via the
askpass() function, or indirectly as password-entry back-end for 'ssh-agent'
or 'git-credential' via the SSH_ASKPASS and GIT_ASKPASS environment variables.
Thereby the user can be prompted for credentials or a passphrase if needed
when R calls out to git or ssh.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between askpass versions 1.2.0 dated 2023-09-03 and 1.2.1 dated 2024-10-04
DESCRIPTION | 12 ++++++------ MD5 | 2 +- 2 files changed, 7 insertions(+), 7 deletions(-)
Title: Stratigraphic Paleobiology Modeling Pipelines
Description: The fossil record is a joint expression of ecological, taphonomic,
evolutionary, and stratigraphic processes (Holland and Patzkowsky, 2012, ISBN:978-0226649382).
This package allowing to simulate biological processes in the time domain
(e.g., trait evolution, fossil abundance), and examine how their expression
in the rock record (stratigraphic domain) is influenced based on
age-depth models, ecological niche models, and taphonomic effects.
Functions simulating common processes used in modeling trait evolution or
event type data such as first/last occurrences are provided and can be used
standalone or as part of a pipeline. The package comes with example
data sets and tutorials in several vignettes, which can be used as a
template to set up one's own simulation.
Author: Niklas Hohmann [aut, cre]
Maintainer: Niklas Hohmann <N.H.Hohmann@uu.nl>
Diff between StratPal versions 0.1.1 dated 2024-08-23 and 0.2.0 dated 2024-10-04
DESCRIPTION | 11 - MD5 | 134 +++++++++++++-------- NAMESPACE | 11 + NEWS.md | 46 ++++--- R/StratPal-package.R | 12 - R/apply_niche.R | 54 ++++++-- R/apply_taphonomy.R | 37 ++++- R/bounded_niche.R | 7 - R/ornstein_uhlenbeck.R | 25 +++ R/ornstein_uhlenbeck_sl.R |only R/p3.R | 2 R/p3_var_rate.R | 8 - R/prob_remove.R |only R/random_walk.R | 20 ++- R/random_walk_sl.R |only R/reduce_to_paleoTS.R |only R/rej_samp.R | 21 ++- R/scenarioA.R | 4 R/snd_niche.R | 5 R/stasis.R | 13 +- R/stasis_sl.R |only R/strict_stasis_sl.R |only R/thin.R | 3 README.md | 21 ++- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION |only inst/WORDLIST |only inst/doc/StratPal.R | 28 +++- inst/doc/StratPal.Rmd | 54 +++++--- inst/doc/StratPal.html | 170 ++++++++++++++------------ inst/doc/StratPal_docs.R |only inst/doc/StratPal_docs.Rmd |only inst/doc/StratPal_docs.html |only inst/doc/advanced_functionality.Rmd | 178 ++++++++++++++-------------- inst/doc/advanced_functionality.html | 20 +-- inst/doc/event_data.R | 29 ++-- inst/doc/event_data.Rmd | 51 ++++---- inst/doc/event_data.html | 42 +++--- inst/doc/paleoTS_functionality.R |only inst/doc/paleoTS_functionality.Rmd |only inst/doc/paleoTS_functionality.html |only inst/doc/phenotypic_evolution.R | 18 +- inst/doc/phenotypic_evolution.Rmd | 30 +++- inst/doc/phenotypic_evolution.html | 149 ++++++++++++----------- man/apply_niche.Rd | 35 +++-- man/apply_taphonomy.Rd | 15 +- man/bounded_niche.Rd | 8 - man/ornstein_uhlenbeck.Rd | 14 +- man/ornstein_uhlenbeck_sl.Rd |only man/p3.Rd | 2 man/p3_var_rate.Rd | 6 man/prob_remove.Rd |only man/random_walk.Rd | 16 +- man/random_walk_sl.Rd |only man/reduce_to_paleoTS.Rd |only man/rej_samp.Rd | 12 + man/scenarioA.Rd | 4 man/snd_niche.Rd | 6 man/stasis.Rd | 12 + man/stasis_sl.Rd |only man/strict_stasis_sl.Rd |only man/thin.Rd | 4 tests/spelling.R |only tests/testthat/test_apply_niche.R |only tests/testthat/test_apply_taphonomy.R |only tests/testthat/test_ornstein_uhlenbeck.R | 11 + tests/testthat/test_ornstein_uhlenbeck_sl.R |only tests/testthat/test_p3.R | 9 + tests/testthat/test_p3_var_rate.R | 9 + tests/testthat/test_prob_remove.R |only tests/testthat/test_random_walk.R | 8 + tests/testthat/test_random_walk_sl.R |only tests/testthat/test_reduce_to_paleoTS.R |only tests/testthat/test_rej_samp.R | 13 ++ tests/testthat/test_stasis.R |only tests/testthat/test_stasis_sl.R |only tests/testthat/test_strict_stasis_sl.R |only vignettes/StratPal.Rmd | 54 +++++--- vignettes/StratPal_docs.Rmd |only vignettes/advanced_functionality.Rmd | 178 ++++++++++++++-------------- vignettes/event_data.Rmd | 51 ++++---- vignettes/paleoTS_functionality.Rmd |only vignettes/phenotypic_evolution.Rmd | 30 +++- 84 files changed, 1044 insertions(+), 656 deletions(-)
Title: Spherical Trigonometry
Description: Spherical trigonometry for geographic applications. That is, compute distances and related measures for angular (longitude/latitude) locations.
Author: Robert J. Hijmans [cre, aut],
Charles Karney [ctb] ,
Ed Williams [ctb],
Chris Vennes [ctb]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between geosphere versions 1.5-18 dated 2022-11-15 and 1.5-20 dated 2024-10-04
ChangeLog | 2 DESCRIPTION | 10 ++-- MD5 | 91 ++++++++++++++++++++++++++++++++-------- R/RcppExports.R | 8 +++ R/alongTrack.R | 74 +++++++++++++++++--------------- R/geocode.R |only R/pointsToMatrix.R | 26 +++++++---- build/partial.rdb |binary build/vignette.rds |binary inst/doc/geosphere.pdf |binary man/OSGB.Rd |only man/geosphere-package.Rd | 2 src/AlbersEqualArea.cpp | 4 + src/AzimuthalEquidistant.cpp |only src/AzimuthalEquidistant.h |only src/CassiniSoldner.cpp |only src/CassiniSoldner.h |only src/CircularEngine.cpp |only src/CircularEngine.h |only src/DMS.cpp |only src/DMS.h |only src/DST.cpp | 4 + src/Ellipsoid.cpp | 2 src/EllipticFunction.cpp | 3 + src/GARS.cpp |only src/GARS.h |only src/GeoCoords.cpp |only src/GeoCoords.h |only src/Geocentric.cpp |only src/Geocentric.h |only src/Geodesic.cpp | 5 ++ src/GeodesicExactC4.cpp |only src/Geohash.cpp |only src/Geohash.h |only src/Geoid.cpp |only src/Geoid.h |only src/Georef.cpp |only src/Georef.h |only src/Gnomonic.cpp |only src/Gnomonic.h |only src/GravityCircle.cpp |only src/GravityCircle.h |only src/GravityModel.cpp |only src/GravityModel.h |only src/LambertConformalConic.cpp |only src/LambertConformalConic.h |only src/LocalCartesian.cpp |only src/LocalCartesian.h |only src/MGRS.cpp |only src/MGRS.h |only src/MagneticCircle.cpp |only src/MagneticCircle.h |only src/MagneticModel.cpp |only src/MagneticModel.h |only src/NearestNeighbor.h |only src/NormalGravity.cpp |only src/NormalGravity.h |only src/OSGB.cpp |only src/OSGB.h |only src/PolarStereographic.cpp |only src/PolarStereographic.h |only src/RcppExports.cpp | 29 ++++++++++++ src/SphericalEngine.cpp |only src/SphericalEngine.h |only src/SphericalHarmonic.h |only src/SphericalHarmonic1.h |only src/SphericalHarmonic2.h |only src/TransverseMercatorExact.cpp |only src/TransverseMercatorExact.h |only src/UTMUPS.cpp |only src/UTMUPS.h |only src/Utility.cpp |only src/Utility.h |only src/a_geodesic.cpp | 2 src/a_geolib.cpp |only src/intersect.cpp |only 76 files changed, 195 insertions(+), 67 deletions(-)
Title: Weighting for Covariate Balance in Observational Studies
Description: Generates balancing weights for causal effect estimation in observational studies with
binary, multi-category, or continuous point or longitudinal treatments by easing and
extending the functionality of several R packages and providing in-house estimation methods.
Available methods include those that rely on parametric modeling, optimization, and machine learning. Also
allows for assessment of weights and checking of covariate balance by interfacing directly
with the 'cobalt' package. Methods for estimating weighted regression models that take into account
uncertainty in the estimation of the weights via M-estimation or bootstrapping are available. See the vignette "Installing Supporting Packages" for instructions on how
to install any package 'WeightIt' uses, including those that may not be on CRAN.
Author: Noah Greifer [aut, cre]
Maintainer: Noah Greifer <noah.greifer@gmail.com>
Diff between WeightIt versions 1.3.0 dated 2024-08-24 and 1.3.1 dated 2024-10-04
DESCRIPTION | 6 MD5 | 92 ++-- NAMESPACE | 5 NEWS.md | 22 + R/anova.glm_weightit.R |only R/as.weightit.R | 18 R/functions_for_processing.R | 16 R/glm_weightit-methods.R | 766 ++++++++++---------------------------- R/glm_weightit.R | 653 ++------------------------------ R/glm_weightit_helpers.R |only R/multinom_weightit.R | 104 +++++ R/ordinal_weightit.R | 176 +++++++- R/predict.glm_weightit.R | 4 R/summary.weightit.R | 17 R/utils.R | 254 +++++++++--- R/weightit.R | 19 R/weightit.fit.R | 14 R/weightit2bart.R | 9 R/weightit2cbps.R | 8 R/weightit2ebal.R | 4 R/weightit2energy.R | 6 R/weightit2gbm.R | 4 R/weightit2glm.R | 37 + R/weightit2ipt.R | 4 R/weightit2npcbps.R | 4 R/weightit2optweight.R | 8 R/weightit2super.R | 6 R/weightit2user.R | 2 R/weightitMSM.R | 34 + README.md | 85 +--- build/stage23.rdb |binary inst/doc/WeightIt.html | 29 - inst/doc/estimating-effects.Rmd | 22 - inst/doc/estimating-effects.html | 150 ++++--- inst/doc/installing-packages.Rmd | 44 +- inst/doc/installing-packages.html | 50 +- man/anova.glm_weightit.Rd |only man/glm_weightit-methods.Rd | 70 +-- man/glm_weightit.Rd | 10 man/method_bart.Rd | 2 man/method_glm.Rd | 8 man/method_optweight.Rd | 1 man/method_user.Rd | 2 man/summary.weightit.Rd | 8 man/weightit.Rd | 2 man/weightit.fit.Rd | 2 tests/testthat/test-vcov_arg.R |only vignettes/estimating-effects.Rmd | 22 - vignettes/installing-packages.Rmd | 44 +- 49 files changed, 1205 insertions(+), 1638 deletions(-)
Title: User-Friendly Tables with Color Helpers for Data Exploration
Description: Make it easy to deal with multiple cross-tables in data exploration, by
creating them, manipulating them, and adding color helpers to highlight
important informations (differences from totals, comparisons between lines or
columns, contributions to variance, confidence intervals, odds ratios, etc.).
All functions are pipe-friendly and render data frames which can be easily
manipulated. In the same time, time-taking operations are done with 'data.table'
to go faster with big dataframes. Tables can be exported with formats and colors
to 'Excel', plot and html.
Author: Brice Nocenti [aut, cre]
Maintainer: Brice Nocenti <brice.nocenti@gmail.com>
Diff between tabxplor versions 1.2.0 dated 2024-08-30 and 1.2.1 dated 2024-10-04
DESCRIPTION | 8 MD5 | 50 NAMESPACE | 2 NEWS.md | 16 R/fmt_class.R | 745 ++- R/jmvtab.b.R | 867 ++-- R/jmvtab.h.R | 42 R/tab.R | 407 +- R/tab_classes.R | 551 ++ R/tab_xl.R | 7945 ++++++++++++++++++++-------------------- R/utils.R | 253 + README.md | 31 inst/doc/tabxplor.html | 796 ++-- inst/i18n/fr.json | 24 man/fmt_get_color_code.Rd | 5 man/formats_SAS_to_R.Rd | 17 man/jmvtab.Rd | 18 man/kable_tabxplor_style.Rd |only man/score_from_lv1.Rd |only man/tab.Rd | 15 man/tab_ci.Rd | 4 man/tab_kable.Rd | 20 man/tab_many.Rd | 28 man/tab_num.Rd | 5 man/tab_plot.Rd | 5 tests/testthat/test-fmt_class.R | 4 tests/testthat/test-tab.R | 24 27 files changed, 6696 insertions(+), 5186 deletions(-)
Title: Functions to Create Publication-Quality Plots
Description: Contains several plotting functions such as barplots, scatterplots, heatmaps, as well as functions to combine plots and assist in the creation of these plots. These functions will give users great ease of use and customization options in broad use for biomedical applications, as well as general purpose plotting. Each of the functions also provides valid default settings to make plotting data more efficient and producing high quality plots with standard colour schemes simpler. All functions within this package are capable of producing plots that are of the quality to be presented in scientific publications and journals. P'ng et al.; BPG: Seamless, automated and interactive visualization of scientific data; BMC Bioinformatics 2019 <doi:10.1186/s12859-019-2610-2>.
Author: Paul Boutros [aut, cre],
Christine P'ng [ctb],
Jeff Green [ctb],
Stephenie Prokopec [ctb],
Ontario Institute for Cancer Research [cph],
The R Core Team [cph],
The R Foundation [cph],
Robert Gentleman [ctb],
Ross Ihaka [ctb],
Caden Bugh [ctb],
Dan Kni [...truncated...]
Maintainer: Paul Boutros <PBoutros@mednet.ucla.edu>
Diff between BoutrosLab.plotting.general versions 7.1.0 dated 2023-10-28 and 7.1.2 dated 2024-10-04
DESCRIPTION | 8 ++++---- MD5 | 25 ++++++++++++++----------- NEWS | 17 +++++++++++++++++ NEWS.md |only R/create.barplot.R | 18 ++++-------------- R/create.boxplot.R | 11 ++++++++--- R/prep.inputs.R |only README.md | 4 ++-- build/vignette.rds |binary inst/doc/PlottingGuide.pdf |binary man/create.barplot.Rd | 2 +- man/create.scatterplot.Rd | 5 ++++- man/legend.grob.Rd | 2 +- src/ks.c | 12 ++++++------ tests/testthat/test-prep.inputs.R |only 15 files changed, 61 insertions(+), 43 deletions(-)
More information about BoutrosLab.plotting.general at CRAN
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