Title: Graph/Network Analysis Based on L1 Centrality
Description: Analyze graph/network data using L1 centrality and prestige. Functions for deriving global, local, and group L1 centrality/prestige are provided. Routines for visual inspection of a graph/network are also provided. Details are in Kang and Oh (2024a) <doi:10.48550/arXiv.2404.13233> and Kang and Oh (2024b) <doi:10.48550/arXiv.2408.12078>.
Author: Seungwoo Kang [aut, cre] ,
Hee-Seok Oh [aut]
Maintainer: Seungwoo Kang <kangsw0401@snu.ac.kr>
Diff between L1centrality versions 0.2.1 dated 2024-09-03 and 0.3.0 dated 2024-10-06
L1centrality-0.2.1/L1centrality/man/Lorenz_plot.Rd |only L1centrality-0.3.0/L1centrality/DESCRIPTION | 8 - L1centrality-0.3.0/L1centrality/MD5 | 39 +++--- L1centrality-0.3.0/L1centrality/NAMESPACE | 12 + L1centrality-0.3.0/L1centrality/NEWS.md | 28 ++++ L1centrality-0.3.0/L1centrality/R/L1cent.R | 76 ++++-------- L1centrality-0.3.0/L1centrality/R/L1centEDGE.R | 37 +++++ L1centrality-0.3.0/L1centrality/R/L1centGROUP.R | 46 ++++++- L1centrality-0.3.0/L1centrality/R/L1centLOC.R | 41 +++++- L1centrality-0.3.0/L1centrality/R/L1centMDS.R | 32 +++-- L1centrality-0.3.0/L1centrality/R/L1centNB.R | 34 ++++- L1centrality-0.3.0/L1centrality/R/L1centrality-package.R | 2 L1centrality-0.3.0/L1centrality/R/Lorenz_plot.R |only L1centrality-0.3.0/L1centrality/R/summary.R |only L1centrality-0.3.0/L1centrality/man/Heterogeneity.Rd |only L1centrality-0.3.0/L1centrality/man/L1cent.Rd | 24 +++ L1centrality-0.3.0/L1centrality/man/L1centEDGE.Rd | 18 ++ L1centrality-0.3.0/L1centrality/man/L1centGROUP.Rd | 21 ++- L1centrality-0.3.0/L1centrality/man/L1centLOC.Rd | 21 +++ L1centrality-0.3.0/L1centrality/man/L1centMDS.Rd | 18 +- L1centrality-0.3.0/L1centrality/man/L1centNB.Rd | 18 ++ L1centrality-0.3.0/L1centrality/man/L1centrality-package.Rd | 2 L1centrality-0.3.0/L1centrality/man/Summary.Rd |only 23 files changed, 354 insertions(+), 123 deletions(-)
Title: Tidy Processing and Analysis of Biological Sequences
Description: A tidy approach to analysis of biological sequences. All processing and data-storage functions are heavily optimized to allow the fastest and most efficient data storage.
Author: Dominik Rafacz [cre, aut] ,
Michal Burdukiewicz [aut] ,
Laura Bakala [aut],
Leon Eyrich Jessen [ctb] ,
Stefan Roediger [ctb] ,
Jadwiga Slowik [ctb] ,
Weronika Puchala [ctb] ,
Katarzyna Sidorczuk [ctb],
Filip Pietluch [ctb],
Jaroslaw Chilimoniuk [ctb] [...truncated...]
Maintainer: Dominik Rafacz <dominikrafacz@gmail.com>
Diff between tidysq versions 1.1.3 dated 2022-01-31 and 1.2.1 dated 2024-10-06
DESCRIPTION | 10 MD5 | 150 ++- NAMESPACE | 501 ++++++------- NEWS.md | 102 +- R/RcppExports.R | 238 +++--- R/alphabet.R | 293 +++---- R/bite.R | 2 R/collapse.R | 2 R/complement.R | 2 R/doc-tidysq.R | 33 R/export_sq.R | 374 ++++----- R/find_invalid_letters.R | 2 R/find_motifs.R | 178 ++-- R/has.R | 6 R/import_sq.R | 505 ++++++------- R/is_empty_sq.R | 13 R/read_fasta.R | 99 +- R/remove_ambiguous.R | 2 R/remove_na.R | 2 R/reverse.R | 2 R/sqapply.R | 17 R/substitute_letters.R | 2 R/translate.R | 2 R/typify.R | 2 R/util-conditions.R |only R/util-options.R | 138 +-- R/util-pack.R | 52 - R/util-type.R | 12 R/util-vctrs-prototypes.R | 238 +++--- R/write_fasta.R | 121 ++- README.md | 349 ++++----- build/vignette.rds |binary inst/doc/advanced-alphabet.R | 136 +-- inst/doc/advanced-alphabet.html | 871 ++++++++++++++--------- inst/doc/quick-start.R | 132 +-- inst/doc/quick-start.Rmd | 287 +++---- inst/doc/quick-start.html | 866 +++++++++++++++------- inst/include/tidysq/ProtoSq.h | 2 inst/include/tidysq/constants/translate_tables.h | 8 inst/include/tidysq/sqapply.h | 2 man/export_sq.Rd | 7 man/find_motifs.Rd | 29 man/get_tidysq_options.Rd | 124 +-- man/import_sq.Rd | 12 man/is_empty_sq.Rd | 3 man/read_fasta.Rd | 173 ++-- man/roxygen/templates/dot-name.R |only man/roxygen/templates/dot-sq.R |only man/sqapply.Rd | 5 man/tidysq-package.Rd | 36 man/write_fasta.Rd | 36 src/RcppExports.cpp | 2 tests/testthat/setup-tests.R |only tests/testthat/test-bite.R | 6 tests/testthat/test-casting.R | 350 ++++----- tests/testthat/test-collapse.R | 6 tests/testthat/test-complement.R | 11 tests/testthat/test-concatenate.R | 416 +++++----- tests/testthat/test-export_sq.R | 51 - tests/testthat/test-find_invalid_letters.R | 6 tests/testthat/test-find_motifs.R | 495 +++++++------ tests/testthat/test-has.R | 6 tests/testthat/test-io.R | 137 ++- tests/testthat/test-is_empty_sq.R | 6 tests/testthat/test-pkg-Biostrings.R | 336 ++++---- tests/testthat/test-pkg-ape.R | 158 ++-- tests/testthat/test-pkg-bioseq.R | 146 +-- tests/testthat/test-pkg-seqinr.R | 118 +-- tests/testthat/test-random_sq.R | 131 +-- tests/testthat/test-remove_ambiguous.R | 7 tests/testthat/test-remove_na.R | 6 tests/testthat/test-reverse.R | 6 tests/testthat/test-sq_type.R | 6 tests/testthat/test-sqapply.R | 6 tests/testthat/test-substitute_letters.R | 202 ++--- tests/testthat/test-translate.R | 23 tests/testthat/test-typify.R | 6 vignettes/quick-start.Rmd | 287 +++---- 78 files changed, 4968 insertions(+), 4140 deletions(-)
Title: Plot Soccer Event Data
Description: The 'ggplot2' package provides a powerful set of tools
for visualising and investigating data. The 'ggsoccer' package provides a
set of functions for elegantly displaying and exploring soccer event data
with 'ggplot2'. Providing extensible layers and themes, it is designed to
work smoothly with a variety of popular sports data providers.
Author: Ben Torvaney [aut, cre]
Maintainer: Ben Torvaney <torvaney@protonmail.com>
Diff between ggsoccer versions 0.1.7 dated 2022-12-16 and 0.2.0 dated 2024-10-06
DESCRIPTION | 10 +- MD5 | 34 +++---- NAMESPACE | 1 NEWS.md | 49 ++++++---- R/annotate_pitch.R | 50 +++++----- R/dimensions.R | 67 +++++++++----- README.md | 17 ++- man/figures/README-example_blank-1.png |binary man/figures/README-example_custom-1.png |binary man/figures/README-example_further_customisation-1.png |binary man/figures/README-example_goals_custom-1.png |binary man/figures/README-example_goals_line-1.png |binary man/figures/README-example_goals_strip-1.png |binary man/figures/README-example_passes-1.png |binary man/figures/README-example_passes_sb-1.png |binary man/figures/README-example_shots-1.png |binary man/pitch_opta.Rd | 47 +++++----- tests/testthat/test-dimensions-plot-without-error.R | 79 +++++++++++++++++ 18 files changed, 236 insertions(+), 118 deletions(-)
Title: An R Client to Retrieve Data from DHIS2
Description: Provides a user-friendly interface for interacting with the District Health
Information Software 2 (DHIS2) instance. It streamlines data retrieval,
empowering researchers, analysts, and healthcare professionals to obtain and
utilize data efficiently.
Author: David Kariuki [aut, cre, cph]
Maintainer: David Kariuki <hello@damurka.com>
Diff between khisr versions 1.0.5 dated 2024-06-27 and 1.0.6 dated 2024-10-06
DESCRIPTION | 8 MD5 | 51 +-- NAMESPACE | 3 NEWS.md | 4 R/api_get.R | 18 - R/get_analytics.R | 138 ++++----- R/get_metadata.R | 25 + R/get_metadata_helpers.R | 396 ++++++++++++++-------------- R/khis_cred.R | 401 +++++++++++++++++++---------- R/khisr-package.R | 106 +++---- R/utils-ui.R | 336 +++++++++++++++--------- R/utils.R | 320 +++++++++++++---------- README.md | 49 +++ inst/doc/khisr.R | 75 +++++ inst/doc/khisr.html | 182 ++++++++----- inst/extdata/valid_cred_conf.json | 2 man/get_analytics.Rd | 4 man/khis_base_url.Rd | 26 + man/khis_cred.Rd | 24 + man/khis_cred_clear.Rd | 17 - man/khis_display_name.Rd |only man/khis_has_cred.Rd | 22 - man/khis_username.Rd | 21 - man/khisr-configuration.Rd | 9 tests/testthat/helper.R | 38 +- tests/testthat/test-get_metadata_helpers.R | 60 ++-- tests/testthat/test-khis_cred.R | 25 + 27 files changed, 1450 insertions(+), 910 deletions(-)
Title: Create 'shiny' Applications for Cox Proportional Hazards Models
Description: Takes one or more fitted Cox proportional hazards models and writes
a 'shiny' application to a directory specified by the user. The 'shiny'
application displays predicted survival curves based on user input, and
contains none of the original data used to create the Cox model or models.
The goal is towards visualization and presentation of predicted survival
curves.
Author: Harrison Clement [aut, cre],
Subodh Selukar [aut],
Stanley Pounds [aut],
St Jude Children's Research Hospital [fnd]
Maintainer: Harrison Clement <harrisonclement16@gmail.com>
Diff between shinyCox versions 1.1.0 dated 2024-05-29 and 1.1.1 dated 2024-10-06
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 4 ++++ R/confints.R | 4 ++-- R/cox_predictions.R | 4 +--- R/shinybuilder.R | 3 +-- man/predict_se.Rd | 2 +- man/surv_pred_info.Rd | 2 +- 8 files changed, 21 insertions(+), 20 deletions(-)
Title: Student Growth Percentiles & Percentile Growth Trajectories
Description: An analytic framework for the calculation of norm- and criterion-referenced academic growth estimates using large scale, longitudinal education assessment data as developed in Betebenner (2009) <doi:10.1111/j.1745-3992.2009.00161.x>.
Author: Damian W. Betebenner [aut, cre],
Adam R. Van Iwaarden [aut],
Ben Domingue [aut],
Yi Shang [aut],
Jonathan Weeks [ctb],
John Stewart [ctb],
Jinnie Choi [ctb],
Xin Wei [ctb],
Hi Shin Shim [ctb],
Xiaoyuan Tan [ctb] ,
Carrie Giovannini [ctb] ,
Sarah Pola [...truncated...]
Maintainer: Damian W. Betebenner <dbetebenner@nciea.org>
Diff between SGP versions 2.1-0.0 dated 2023-10-23 and 2.2-0.0 dated 2024-10-06
DESCRIPTION | 24 MD5 | 73 - NAMESPACE | 2 R/abcSGP.R | 2 R/analyzeSGP.R | 9 R/combineSGP.R | 53 R/csemScoreSimulator.R | 4 R/getPanelData.R | 16 R/getSGPConfig.R | 79 - R/getStateAbbreviation.R | 2 R/getTargetInitialStatus.R | 2 R/getTargetSGP.R | 38 R/getTargetScaleScore.R | 8 R/getTargetScaleScoreTableNames.R |only R/gofSGP.R | 13 R/growthAchievementPlot.R | 10 R/mergeScaleScoreTarget.R | 75 - R/prepareSGP.R | 5 R/studentGrowthPercentiles.R | 80 + R/studentGrowthPlot_Styles.R | 256 ++-- R/studentGrowthProjections.R | 102 + R/summarizeSGP.R | 497 ++++----- R/summarizeSGP_Utilities.R | 360 +++--- R/testSGP.R | 62 - R/visualizeSGP.R | 21 R/zzz.R | 2 build/vignette.rds |binary data/SGPstateData.rda |binary inst/CITATION | 8 inst/NEWS | 6 inst/doc/SGP_Data_Preparation.R | 5 inst/doc/SGP_Data_Preparation.Rmd | 8 inst/doc/SGP_Data_Preparation.html | 1991 ------------------------------------- man/SGP-package.Rd | 4 man/abcSGP.Rd | 4 man/prepareSGP.Rd | 4 vignettes/SGP_Data_Preparation.Rmd | 8 vignettes/releases/SGP-2.1-0.0.Rmd | 6 38 files changed, 1031 insertions(+), 2808 deletions(-)
Title: Use 'QGIS' Processing Algorithms
Description: Provides seamless access to the 'QGIS'
(<https://qgis.org>) processing toolbox using the standalone
'qgis_process' command-line utility. Both native and third-party
(plugin) processing providers are supported. Beside referring data
sources from file, also common objects from 'sf', 'terra' and 'stars'
are supported. The native processing algorithms are documented by QGIS.org
(2024) <https://docs.qgis.org/latest/en/docs/user_manual/processing_algs/>.
Author: Dewey Dunnington [aut] ,
Floris Vanderhaeghe [aut, cre]
),
Jan Caha [aut] ,
Jannes Muenchow [aut] ,
Antony Barja [ctb] ,
Robin Lovelace [ctb] ,
Jakub Nowosad [ctb] ,
Research Institute for Nature and Forest [cph, fnd]
Maintainer: Floris Vanderhaeghe <floris.vanderhaeghe@inbo.be>
Diff between qgisprocess versions 0.4.0 dated 2024-07-07 and 0.4.1 dated 2024-10-06
DESCRIPTION | 22 ++++++------ MD5 | 28 +++++++-------- NEWS.md | 7 +++ R/qgis-algorithms.R | 2 - R/qgis-help.R | 3 - R/qgis-run-algorithm.R | 3 - README.md | 12 +++--- inst/CITATION | 4 +- inst/doc/cheatsheet_en.html | 2 - inst/doc/cheatsheet_es.html | 2 - inst/doc/options.html | 2 - inst/doc/qgis_arguments.html | 4 +- inst/doc/qgis_expressions.html | 6 +-- inst/doc/qgisprocess.html | 72 ++++++++++++++++++++--------------------- man/qgisprocess-package.Rd | 2 - 15 files changed, 89 insertions(+), 82 deletions(-)
Title: Compute, Handle and Plot Incidence of Dated Events
Description: Provides functions and classes to compute, handle and visualise
incidence from dated events for a defined time interval. Dates can be
provided in various standard formats. The class 'incidence2' is used to store
computed incidence and can be easily manipulated, subsetted, and plotted.
This package is part of the RECON (<https://www.repidemicsconsortium.org/>)
toolkit for outbreak analysis (<https://www.reconverse.org>).
Author: Tim Taylor [aut, cre] ,
Thibaut Jombart [ctb]
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>
Diff between incidence2 versions 2.4.0 dated 2024-09-02 and 2.5.0 dated 2024-10-06
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NEWS.md | 8 ++++++++ R/subset.R | 5 ++++- README.md | 2 +- build/vignette.rds |binary inst/doc/incidence2.R | 2 +- inst/doc/incidence2.Rmd | 2 +- inst/doc/incidence2.html | 38 +++++++++++++++++++------------------- vignettes/incidence2.Rmd | 2 +- 10 files changed, 47 insertions(+), 36 deletions(-)
Title: Co-Correspondence Analysis Methods
Description: Fits predictive and symmetric co-correspondence analysis (CoCA) models to relate one data matrix to another data matrix. More specifically, CoCA maximises the weighted covariance between the weighted averaged species scores of one community and the weighted averaged species scores of another community. CoCA attempts to find patterns that are common to both communities.
Author: Gavin L. Simpson [aut, cre, trl] ,
Cajo J.F. ter Braak [aut] ,
Andre P Schaffers [aut] ,
Ron Wehrens [aut] ),
Bjorn-Helge Mevik [aut] )
Maintainer: Gavin L. Simpson <ucfagls@gmail.com>
Diff between cocorresp versions 0.4-4 dated 2024-02-26 and 0.4-5 dated 2024-10-06
DESCRIPTION | 34 +++- MD5 | 14 - build/vignette.rds |binary inst/ChangeLog | 11 - inst/doc/cocorresp-intro.html | 277 +++++++++++++++++++++------------- man/coca.Rd | 11 + man/envfit.coca.Rd | 12 - tests/Examples/cocorresp-Ex.Rout.save | 17 +- 8 files changed, 244 insertions(+), 132 deletions(-)
Title: Floristic Quality Assessment Tools for R
Description: Tools for downloading and analyzing floristic quality assessment data.
See Freyman et al. (2015) <doi:10.1111/2041-210X.12491> for more information
about floristic quality assessment and the associated database.
Author: Andrew Gard [aut, cre] ,
Alexia Myers [aut],
Irene Luwabelwa [aut]
Maintainer: Andrew Gard <agard@lakeforest.edu>
Diff between fqar versions 0.5.3 dated 2024-04-13 and 0.5.4 dated 2024-10-06
DESCRIPTION | 10 +++++----- MD5 | 13 +++++++------ R/download_database_internal.R | 8 +++++++- build/vignette.rds |binary inst/CITATION |only inst/doc/fqar.html | 8 ++++---- tests/testthat/test-species_acronym.R | 2 +- tests/testthat/test-transect_list_glance.R | 2 +- 8 files changed, 25 insertions(+), 18 deletions(-)
Title: High Dimensional Discriminant Analysis
Description: Performs linear discriminant analysis in high dimensional
problems based on reliable covariance estimators for problems
with (many) more variables than observations. Includes routines
for classifier training, prediction, cross-validation and
variable selection.
Author: Antonio Pedro Duarte Silva [aut, cre]
Maintainer: Antonio Pedro Duarte Silva <psilva@ucp.pt>
Diff between HiDimDA versions 0.2-6 dated 2024-02-25 and 0.2-7 dated 2024-10-06
CHANGELOG | 6 ++++ DESCRIPTION | 16 +++++++----- MD5 | 12 ++++----- man/DACrossVal.Rd | 2 - man/HiDimDA-package.Rd | 4 +-- src/RInterface.cpp | 24 +++++++++--------- src/rghtsngv.f | 64 ++++++++++++++++++++++++------------------------- 7 files changed, 69 insertions(+), 59 deletions(-)
Title: Common R Scripts and Utilities Used by the Statnet Project
Software
Description: Non-statistical utilities used by the software developed by the Statnet Project. They may also be of use to others.
Author: Pavel N. Krivitsky [aut, cre] ,
Skye Bender-deMoll [ctb],
Chad Klumb [ctb]
Maintainer: Pavel N. Krivitsky <pavel@statnet.org>
Diff between statnet.common versions 4.9.0 dated 2023-05-24 and 4.10.0 dated 2024-10-06
statnet.common-4.10.0/statnet.common/DESCRIPTION | 14 - statnet.common-4.10.0/statnet.common/LICENSE | 2 statnet.common-4.10.0/statnet.common/MD5 | 57 ++--- statnet.common-4.10.0/statnet.common/NAMESPACE | 5 statnet.common-4.10.0/statnet.common/NEWS | 23 +- statnet.common-4.10.0/statnet.common/NEWS.md | 10 statnet.common-4.10.0/statnet.common/R/Welford.R | 2 statnet.common-4.10.0/statnet.common/R/cite.utilities.R | 2 statnet.common-4.10.0/statnet.common/R/control.utilities.R | 5 statnet.common-4.10.0/statnet.common/R/deprecation_utils.R | 2 statnet.common-4.10.0/statnet.common/R/formula.utilities.R | 2 statnet.common-4.10.0/statnet.common/R/locator.R | 2 statnet.common-4.10.0/statnet.common/R/logspace.utils.R | 22 +- statnet.common-4.10.0/statnet.common/R/matrix.utils.R | 117 +++++++---- statnet.common-4.10.0/statnet.common/R/mcmc-utils.R | 68 ++++-- statnet.common-4.10.0/statnet.common/R/misc.utilities.R | 2 statnet.common-4.10.0/statnet.common/R/startup.utilities.R | 2 statnet.common-4.10.0/statnet.common/R/string.utilities.R | 2 statnet.common-4.10.0/statnet.common/R/wmatrix.R | 2 statnet.common-4.10.0/statnet.common/R/zzz.R | 2 statnet.common-4.10.0/statnet.common/build/stage23.rdb |binary statnet.common-4.10.0/statnet.common/inst/CITATION | 14 - statnet.common-4.10.0/statnet.common/inst/templates/snctrl.R | 2 statnet.common-4.10.0/statnet.common/man/logspace.utils.Rd | 11 - statnet.common-4.10.0/statnet.common/man/mcmc-utilities.Rd | 52 +++- statnet.common-4.10.0/statnet.common/man/ssolve.Rd | 29 +- statnet.common-4.10.0/statnet.common/man/xTAx.Rd | 16 + statnet.common-4.10.0/statnet.common/src/init.c | 2 statnet.common-4.10.0/statnet.common/src/logspace_utils.c | 2 statnet.common-4.9.0/statnet.common/build/statnet.common.pdf |only 30 files changed, 327 insertions(+), 144 deletions(-)
More information about statnet.common at CRAN
Permanent link
Title: Call 'BEAST2'
Description: 'BEAST2' (<https://www.beast2.org>) is a widely used
Bayesian phylogenetic tool, that uses DNA/RNA/protein data
and many model priors to create a posterior of jointly estimated
phylogenies and parameters.
'BEAST2' is a command-line tool.
This package provides a way to call 'BEAST2'
from an 'R' function call.
Author: Richel J.C. Bilderbeek [aut, cre]
,
Joelle Barido-Sottani [rev] ,
David Winter [rev] ,
Jason Griffiths [ctb] ,
Olivier Roy [ctb],
Thijs Janzen [ctb]
Maintainer: Richel J.C. Bilderbeek <rjcbilderbeek@gmail.com>
Diff between beastier versions 2.5.1 dated 2024-06-04 and 2.5.2 dated 2024-10-06
DESCRIPTION | 12 +-- MD5 | 20 +++--- R/default_params_doc.R | 2 R/remove_beastier_folder.R | 8 +- build/vignette.rds |binary inst/CITATION | 2 inst/doc/demo.html | 107 +-------------------------------- inst/extdata/README.md | 13 ++-- man/default_params_doc.Rd | 2 man/remove_beastier_folder.Rd | 8 +- man/rename_beast2_options_filenames.Rd | 2 11 files changed, 41 insertions(+), 135 deletions(-)
Title: Extremal Dependence Models
Description: A set of procedures for parametric and non-parametric modelling of the dependence structure of multivariate extreme-values is provided. The statistical inference is performed with non-parametric estimators, likelihood-based estimators and Bayesian techniques. It adapts the methodologies of Beranger and Padoan (2015) <doi:10.48550/arXiv.1508.05561>, Marcon et al. (2016) <doi:10.1214/16-EJS1162>, Marcon et al. (2017) <doi:10.1002/sta4.145>, Marcon et al. (2017) <doi:10.1016/j.jspi.2016.10.004> and Beranger et al. (2021) <doi:10.1007/s10687-019-00364-0>. This package also allows for the modelling of spatial extremes using flexible max-stable processes. It provides simulation algorithms and fitting procedures relying on the Stephenson-Tawn likelihood as per Beranger at al. (2021) <doi:10.1007/s10687-020-00376-1>.
Author: Boris Beranger [aut],
Simone Padoan [cre, aut],
Giulia Marcon [aut],
Steven G. Johnson [ctb] ,
Rudolf Schuerer [ctb] ,
Brian Gough [ctb] ,
Alec G. Stephenson [ctb],
Anne Sabourin [ctb]
Maintainer: Simone Padoan <simone.padoan@unibocconi.it>
Diff between ExtremalDep versions 0.0.4-1 dated 2023-09-25 and 0.0.4-2 dated 2024-10-06
DESCRIPTION | 15 ++++++------ MD5 | 26 ++++++++++---------- R/dExtDep.R | 2 - man/WindSpeedGust.Rd | 16 ++++++------ man/fExtDep.Rd | 36 ++++++++++++++--------------- man/fExtDep.np.Rd | 62 +++++++++++++++++++++++++------------------------- man/fGEV.Rd | 16 ++++++------ man/heat.Rd | 18 +++++++------- man/index.ExtDep.Rd | 14 +++++------ man/plot_ExtDep.np.Rd | 14 +++++------ man/rExtDepSpat.Rd | 30 ++++++++++++------------ man/summary_ExtDep.Rd | 38 +++++++++++++++--------------- src/cubature.c | 46 ++++++++++++++++++------------------- src/spatial.c | 4 +-- 14 files changed, 169 insertions(+), 168 deletions(-)
Title: Maximum Likelihood Estimation of a Log-Concave Density Based on
Censored Data
Description: Based on right or interval censored data, compute the maximum likelihood estimator of a (sub)probability density under the assumption that it is log-concave. For further information see Duembgen, Rufibach and Schuhmacher (2014) <doi:10.1214/14-EJS930>.
Author: Dominic Schuhmacher [aut, cre],
Kaspar Rufibach [aut],
Lutz Duembgen [aut]
Maintainer: Dominic Schuhmacher <dominic.schuhmacher@mathematik.uni-goettingen.de>
Diff between logconcens versions 0.17-3 dated 2023-08-19 and 0.17-4 dated 2024-10-06
DESCRIPTION | 16 ++++++++++----- MD5 | 8 +++---- README.md | 4 ++- build/partial.rdb |binary src/logconcens.c | 56 +++++++++++++++++++++++++++--------------------------- 5 files changed, 46 insertions(+), 38 deletions(-)
Title: Manipulation Testing Based on Density Discontinuity
Description: Density discontinuity testing (a.k.a. manipulation testing) is commonly employed in regression discontinuity designs and other program evaluation settings to detect perfect self-selection (manipulation) around a cutoff where treatment/policy assignment changes. This package implements manipulation testing procedures using the local polynomial density estimators: rddensity() to construct test statistics and p-values given a prespecified cutoff, rdbwdensity() to perform data-driven bandwidth selection, and rdplotdensity() to construct density plots.
Author: Matias D. Cattaneo [aut],
Michael Jansson [aut],
Xinwei Ma [aut, cre]
Maintainer: Xinwei Ma <x1ma@ucsd.edu>
Diff between rddensity versions 2.5 dated 2024-01-22 and 2.6 dated 2024-10-06
DESCRIPTION | 20 ++++++++++++++++---- MD5 | 16 ++++++++-------- R/rddensity-package.R | 4 ++-- R/rddensity.R | 4 ++-- R/rdplotdensity.R | 37 ++++++++++++++++++++++--------------- build/partial.rdb |binary man/rddensity-package.Rd | 5 +++-- man/rddensity.Rd | 4 ++-- man/rdplotdensity.Rd | 16 ++++++++-------- 9 files changed, 63 insertions(+), 43 deletions(-)
Title: Connectome Predictive Modelling in R
Description: Connectome Predictive Modelling (CPM) (Shen et al. (2017)
<doi:10.1038/nprot.2016.178>) is a method to predict individual
differences in behaviour from brain functional connectivity. 'cpmr'
provides a simple yet efficient implementation of this method.
Author: Liang Zhang [aut, cre]
Maintainer: Liang Zhang <psychelzh@outlook.com>
Diff between cpmr versions 0.0.9 dated 2024-06-08 and 0.1.0 dated 2024-10-06
cpmr-0.0.9/cpmr/R/zzz.R |only cpmr-0.0.9/cpmr/man/figures |only cpmr-0.1.0/cpmr/DESCRIPTION | 11 cpmr-0.1.0/cpmr/MD5 | 30 - cpmr-0.1.0/cpmr/NAMESPACE | 5 cpmr-0.1.0/cpmr/NEWS.md | 15 cpmr-0.1.0/cpmr/R/cpm.R | 125 ++++- cpmr-0.1.0/cpmr/R/cpmr-package.R |only cpmr-0.1.0/cpmr/R/summary.R |only cpmr-0.1.0/cpmr/R/tidy.R |only cpmr-0.1.0/cpmr/README.md | 32 + cpmr-0.1.0/cpmr/build |only cpmr-0.1.0/cpmr/man/cpm.Rd | 218 +++++----- cpmr-0.1.0/cpmr/man/cpmr-package.Rd |only cpmr-0.1.0/cpmr/man/reexports.Rd |only cpmr-0.1.0/cpmr/man/summary.cpm.Rd |only cpmr-0.1.0/cpmr/man/tidy.cpm.Rd |only cpmr-0.1.0/cpmr/tests/testthat/_snaps/cpm.md | 489 ++++++++++++++++++++++- cpmr-0.1.0/cpmr/tests/testthat/_snaps/summary.md |only cpmr-0.1.0/cpmr/tests/testthat/_snaps/tidy.md |only cpmr-0.1.0/cpmr/tests/testthat/test-cpm.R | 44 +- cpmr-0.1.0/cpmr/tests/testthat/test-summary.R |only cpmr-0.1.0/cpmr/tests/testthat/test-tidy.R |only 23 files changed, 799 insertions(+), 170 deletions(-)
Title: Local Polynomial Density Estimation and Inference
Description: Without imposing stringent distributional assumptions or shape restrictions, nonparametric estimation has been popular in economics and other social sciences for counterfactual analysis, program evaluation, and policy recommendations. This package implements a novel density (and derivatives) estimator based on local polynomial regressions, documented in Cattaneo, Jansson and Ma (2022) <doi:10.18637/jss.v101.i02>: lpdensity() to construct local polynomial based density (and derivatives) estimator, and lpbwdensity() to perform data-driven bandwidth selection.
Author: Matias D. Cattaneo [aut],
Michael Jansson [aut],
Xinwei Ma [aut, cre]
Maintainer: Xinwei Ma <x1ma@ucsd.edu>
Diff between lpdensity versions 2.4 dated 2023-01-21 and 2.5 dated 2024-10-06
DESCRIPTION | 22 +++++++++++++++++----- MD5 | 20 ++++++++++---------- R/lpbwdensity.R | 15 ++++++++++++--- R/lpdensity-package.R | 33 ++++++++++++++++++++++++--------- R/lpdensity.R | 10 +++++----- R/lpdensity_methods.R | 24 ++++++++++++------------ man/lpbwdensity.Rd | 15 ++++++++++++--- man/lpdensity-package.Rd | 34 ++++++++++++++++++++++++---------- man/lpdensity.Rd | 10 +++++----- man/lpdensity.plot.Rd | 12 ++++++------ man/plot.lpdensity.Rd | 12 ++++++------ 11 files changed, 133 insertions(+), 74 deletions(-)