Title: Subject Weighted Support Vector Machines
Description: Functions for subject/instance weighted support vector machines (SVM).
It uses a modified version of 'libsvm' and is compatible with package 'e1071'. It also allows user defined kernel matrix.
Author: Tianchen Xu [aut, cre] ,
Chih-Chung Chang [ctb, cph] ,
Chih-Chen Lin [ctb, cph] ,
Ming-Wei Chang [ctb, cph] ,
Hsuan-Tien Lin [ctb, cph] ,
Ming-Hen Tsai [ctb, cph] ,
Chia-Hua Ho [ctb, cph] ,
Hsiang-Fu Yu [ctb, cph] ,
David Meyer [ctb],
Evgenia Dimitri [...truncated...]
Maintainer: Tianchen Xu <tx2155@columbia.edu>
Diff between WeightSVM versions 1.7-13 dated 2023-12-03 and 1.7-16 dated 2024-10-11
DESCRIPTION | 78 +++++++++++++++++++++++++++++++++++++++++---------- MD5 | 10 +++--- build/vignette.rds |binary inst/NEWS.Rd | 6 +++ inst/doc/wsvmdoc.pdf |binary src/svm.cpp | 2 - 6 files changed, 75 insertions(+), 21 deletions(-)
Title: Versatile Functions for Working with Pedigrees
Description: Tools to sort, edit and prune pedigrees and to extract the inbreeding coefficients
and the relationship matrix (includes code for pedigrees from self-pollinated species).
The use of pedigree data is central to genetics research within the animal and plant breeding communities to predict
breeding values. The relationship matrix between the individuals can be derived from pedigree structure
('Vazquez et al., 2010') <doi:10.2527/jas.2009-1952>.
Author: Ana Ines Vazquez [aut],
Douglas Bates [aut],
Siddharth Avadhanam [aut],
Paulino Perez Rodriguez [aut, cre],
Gregor Gorjanc [ctb]
Maintainer: Paulino Perez Rodriguez <perpdgo@colpos.mx>
Diff between pedigreeTools versions 0.2 dated 2023-08-15 and 0.3 dated 2024-10-11
CHANGELOG | 34 ++++++++++++++++++++++++++++++++++ DESCRIPTION | 30 +++++++++++++++++++++++++----- MD5 | 22 +++++++++++----------- R/pedigree.R | 14 +++++++------- man/getA.Rd | 2 +- man/getAInv.Rd | 3 ++- man/getASubset.Rd | 2 +- man/getT.Rd | 2 +- man/getTInv.Rd | 2 +- man/relfactor.Rd | 2 +- man/relfactorInv.Rd | 2 +- src/pedigree.c | 23 ++++++++++++++++------- 12 files changed, 101 insertions(+), 37 deletions(-)
Title: Generalized Label Formatting
Description: The 'spork' syntax describes
label formatting concisely, supporting
mixed nesting of subscripts and superscripts
to arbitrary depth. It intends to be easy
to read and write in plain text, and easy
to convert to equivalent presentations
in 'plotmath', 'latex', and 'html'. Greek symbols
and a multiplication symbol are explicitly
supported. See ?as_spork and ?as_previews.
Author: Tim Bergsma [aut, cre]
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Diff between spork versions 0.3.3 dated 2024-03-29 and 0.3.5 dated 2024-10-11
DESCRIPTION | 14 +++-- MD5 | 100 +++++++++++++++++++++--------------------- NAMESPACE | 2 R/latex.R | 61 +++++++++++++++++++------ man/as.expression.plotmath.Rd | 2 man/as.list.spork.Rd | 2 man/as.png.plotmath.Rd | 6 +- man/as.png.spork.Rd | 6 +- man/as_html.greek.Rd | 2 man/as_html.spar.Rd | 2 man/as_html.spork.Rd | 4 - man/as_latex.Rd | 2 man/as_latex.default.Rd |only man/as_latex.greek.Rd | 4 + man/as_latex.latex.Rd |only man/as_latex.spar.Rd | 4 + man/as_latex.spork.Rd | 6 +- man/as_plotmath.greek.Rd | 2 man/as_plotmath.spar.Rd | 6 +- man/as_plotmath.spork.Rd | 4 - man/as_preview.Rd | 2 man/as_preview.html.Rd | 4 - man/as_preview.latex.Rd | 4 - man/as_preview.plotmath.Rd | 4 - man/as_previews.Rd | 2 man/as_previews.default.Rd | 4 - man/as_previews.spork.Rd | 6 +- man/as_spar.default.Rd | 6 +- man/as_spar.spork.Rd | 6 +- man/as_spork.character.Rd | 2 man/as_spork.factor.Rd | 2 man/as_spork.spork.Rd | 2 man/concatenate.NULL.Rd | 4 - man/concatenate.character.Rd | 4 - man/concatenate.latex.Rd | 8 ++- man/concatenate.plotmath.Rd | 6 +- man/ggplot.plotmath.Rd | 6 +- man/ggplot.spork.Rd | 6 +- man/goodToken.Rd | 2 man/greek.Rd | 2 man/html2xml.Rd | 2 man/htmlToken.Rd | 2 man/latexToken.Rd | 4 + man/plotmathToken.Rd | 2 man/sub-.html.Rd | 2 man/sub-.latex.Rd | 4 + man/sub-.plotmath.Rd | 2 man/sub-.spork.Rd | 2 man/sub-sub-.html.Rd | 2 man/sub-sub-.latex.Rd | 4 + man/sub-sub-.plotmath.Rd | 2 man/sub-sub-.spork.Rd | 2 52 files changed, 198 insertions(+), 143 deletions(-)
Title: Univariate GARCH Models
Description: Multiple flavors of the Generalized Autoregressive Conditional Heteroskedasticity (GARCH) model with a large choice of conditional distributions. Methods for specification, estimation, prediction, filtering, simulation, statistical testing and more. Represents a partial re-write and re-think of 'rugarch', making use of automatic differentiation for estimation.
Author: Alexios Galanos [aut, cre, cph]
Maintainer: Alexios Galanos <alexios@4dscape.com>
Diff between tsgarch versions 1.0.2 dated 2024-05-08 and 1.0.3 dated 2024-10-11
DESCRIPTION | 15 +- MD5 | 45 ++++--- NAMESPACE | 6 NEWS.md | 26 ++++ R/estimate.R | 9 - R/filter.R | 3 R/methods.R | 102 +++++++++++++--- R/multispec.R |only R/predict.R | 33 ++++- R/simulate.R | 15 +- build/partial.rdb |binary build/vignette.rds |binary inst/doc/benchmark.html | 21 +-- inst/doc/demonstration.html | 42 +++--- inst/doc/garch_models.pdf |binary man/estimate.Rd | 30 ++++ man/fitted.Rd | 13 +- man/plus-.tsgarch.spec.Rd |only man/residuals.Rd | 15 +- man/sigma.Rd | 12 + man/to_multi_estimate.Rd |only man/tsgarch-package.Rd | 2 src/RcppExports.cpp | 123 +++++++++---------- src/simulation.cpp | 253 +++++++++++++++++++++-------------------- tests/testthat/test-operator.R |only tests/testthat/test-tmb.R |only 26 files changed, 473 insertions(+), 292 deletions(-)
Title: Read and Write General Transit Feed Specification (GTFS) Files
Description: Tools for the development of packages related to General
Transit Feed Specification (GTFS) files. Establishes a standard for
representing GTFS feeds using R data types. Provides fast and flexible
functions to read and write GTFS feeds while sticking to this
standard. Defines a basic 'gtfs' class which is meant to be extended
by packages that depend on it. And offers utility functions that
support checking the structure of GTFS objects.
Author: Daniel Herszenhut [aut, cre] ,
Flavio Poletti [aut],
Mark Padgham [aut],
Rafael H. M. Pereira [rev] ,
Tom Buckley [rev],
Ipea - Institute for Applied Economic Research [cph, fnd]
Maintainer: Daniel Herszenhut <dhersz@gmail.com>
Diff between gtfsio versions 1.1.1 dated 2023-10-20 and 1.2.0 dated 2024-10-11
DESCRIPTION | 17 LICENSE | 4 MD5 | 106 +-- NAMESPACE | 37 - NEWS.md | 143 ++-- R/assert_gtfs.R | 232 +++---- R/assert_inputs.R | 560 ++++++++--------- R/checks.R | 516 +++++++-------- R/data.R |only R/export_gtfs.R | 478 +++++++------- R/get_gtfs_standards.R | 823 ++++++++++++------------- R/gtfs_methods.R | 98 +-- R/gtfs_subset.R | 70 +- R/gtfsio.R | 34 - R/gtfsio_error.R | 106 +-- R/import_gtfs.R | 911 ++++++++++++++-------------- R/new_gtfs.R | 132 ++-- R/utils.R |only README.md | 200 +++--- build/vignette.rds |binary data |only inst/doc/gtfsio.R | 250 +++---- inst/doc/gtfsio.Rmd | 406 ++++++------ inst/doc/gtfsio.html | 1201 ++++++++++++++++++++----------------- inst/extdata/locations_feed.zip |only inst/reference |only inst/tinytest/test_assert_gtfs.R | 178 ++--- inst/tinytest/test_assert_inputs.R | 374 +++++------ inst/tinytest/test_checks.R | 740 +++++++++++----------- inst/tinytest/test_export_gtfs.R | 612 +++++++++--------- inst/tinytest/test_gtfsio_error.R | 172 ++--- inst/tinytest/test_import_gtfs.R | 874 +++++++++++++------------- inst/tinytest/test_new_gtfs.R | 126 +-- inst/tinytest/test_print.R | 66 +- inst/tinytest/test_subset.R | 44 - inst/tinytest/test_summary.R | 58 - man/assert_gtfs.Rd | 74 +- man/assert_vector.Rd | 114 +-- man/check_field_class.Rd | 114 +-- man/check_field_exists.Rd | 88 +- man/check_file_exists.Rd | 82 +- man/export_gtfs.Rd | 146 ++-- man/get_gtfs_standards.Rd | 120 +-- man/gtfs_reference.Rd |only man/gtfsio-package.Rd | 84 +- man/gtfsio_error.Rd | 48 - man/import_gtfs.Rd | 183 ++--- man/new_gtfs.Rd | 122 +-- man/parent_function_error.Rd | 48 - man/print.gtfs.Rd | 58 - man/read_files.Rd | 81 +- man/read_geojson.Rd |only man/sub-.gtfs.Rd | 72 +- man/summary.gtfs.Rd | 46 - man/translate_types.Rd | 46 - tests/tinytest.R | 12 vignettes/gtfsio.Rmd | 406 ++++++------ 57 files changed, 5849 insertions(+), 5663 deletions(-)
Title: The Time Series Modeling Companion to 'healthyR'
Description: Hospital time series data analysis workflow tools, modeling, and automations.
This library provides many useful tools to review common administrative time
series hospital data. Some of these include average length of stay, and
readmission rates. The aim is to provide a simple and consistent verb
framework that takes the guesswork out of everything.
Author: Steven Sanderson [aut, cre, cph]
Maintainer: Steven Sanderson <spsanderson@gmail.com>
Diff between healthyR.ts versions 0.3.0 dated 2023-11-15 and 0.3.1 dated 2024-10-11
healthyR.ts-0.3.0/healthyR.ts/R/ts_fcst_sim.R |only healthyR.ts-0.3.0/healthyR.ts/R/ts_random_walk.R |only healthyR.ts-0.3.1/healthyR.ts/DESCRIPTION | 17 - healthyR.ts-0.3.1/healthyR.ts/MD5 | 107 +++++----- healthyR.ts-0.3.1/healthyR.ts/NEWS.md | 18 + healthyR.ts-0.3.1/healthyR.ts/R/boilerplate-autoarima-xgboost.R | 6 healthyR.ts-0.3.1/healthyR.ts/R/boilerplate-autoarima.R | 2 healthyR.ts-0.3.1/healthyR.ts/R/boilerplate-croston.R | 2 healthyR.ts-0.3.1/healthyR.ts/R/boilerplate-exp-smoothing.R | 4 healthyR.ts-0.3.1/healthyR.ts/R/boilerplate-glmnet.R | 5 healthyR.ts-0.3.1/healthyR.ts/R/boilerplate-lm.R | 4 healthyR.ts-0.3.1/healthyR.ts/R/boilerplate-mars.R | 5 healthyR.ts-0.3.1/healthyR.ts/R/boilerplate-nnetar.R | 4 healthyR.ts-0.3.1/healthyR.ts/R/boilerplate-prophet-reg.R | 4 healthyR.ts-0.3.1/healthyR.ts/R/boilerplate-prophet-xgboost.R | 4 healthyR.ts-0.3.1/healthyR.ts/R/boilerplate-smooth-es.R | 5 healthyR.ts-0.3.1/healthyR.ts/R/boilerplate-svm-poly.R | 5 healthyR.ts-0.3.1/healthyR.ts/R/boilerplate-svm-rbf.R | 4 healthyR.ts-0.3.1/healthyR.ts/R/boilerplate-theta.R | 2 healthyR.ts-0.3.1/healthyR.ts/R/boilerplate-xgboost.R | 4 healthyR.ts-0.3.1/healthyR.ts/R/tidy-fft.R | 2 healthyR.ts-0.3.1/healthyR.ts/R/ts-fcst-sim.R |only healthyR.ts-0.3.1/healthyR.ts/R/ts-feature-cluster-plt.R | 2 healthyR.ts-0.3.1/healthyR.ts/R/ts-qq-plot.R | 4 healthyR.ts-0.3.1/healthyR.ts/R/ts-random-walk.R |only healthyR.ts-0.3.1/healthyR.ts/R/ts-vva-plot.R | 14 - healthyR.ts-0.3.1/healthyR.ts/README.md | 107 +++++++++- healthyR.ts-0.3.1/healthyR.ts/build/vignette.rds |binary healthyR.ts-0.3.1/healthyR.ts/inst/doc/getting-started.html | 30 +- healthyR.ts-0.3.1/healthyR.ts/inst/doc/using-tidy-fft.html | 52 +++- healthyR.ts-0.3.1/healthyR.ts/man/figures/README-ts_random_walk_ggplot_layers-1.png |binary healthyR.ts-0.3.1/healthyR.ts/man/figures/README-unnamed-chunk-2-1.png |binary healthyR.ts-0.3.1/healthyR.ts/man/figures/README-unnamed-chunk-3-1.png |binary healthyR.ts-0.3.1/healthyR.ts/man/figures/README-unnamed-chunk-4-1.png |binary healthyR.ts-0.3.1/healthyR.ts/man/figures/README-unnamed-chunk-4-2.png |only healthyR.ts-0.3.1/healthyR.ts/man/figures/README-unnamed-chunk-6-1.png |binary healthyR.ts-0.3.1/healthyR.ts/man/tidy_fft.Rd | 4 healthyR.ts-0.3.1/healthyR.ts/man/ts_auto_arima_xgboost.Rd | 2 healthyR.ts-0.3.1/healthyR.ts/man/ts_auto_croston.Rd | 2 healthyR.ts-0.3.1/healthyR.ts/man/ts_auto_exp_smoothing.Rd | 2 healthyR.ts-0.3.1/healthyR.ts/man/ts_auto_glmnet.Rd | 3 healthyR.ts-0.3.1/healthyR.ts/man/ts_auto_lm.Rd | 2 healthyR.ts-0.3.1/healthyR.ts/man/ts_auto_mars.Rd | 3 healthyR.ts-0.3.1/healthyR.ts/man/ts_auto_nnetar.Rd | 2 healthyR.ts-0.3.1/healthyR.ts/man/ts_auto_prophet_boost.Rd | 2 healthyR.ts-0.3.1/healthyR.ts/man/ts_auto_prophet_reg.Rd | 2 healthyR.ts-0.3.1/healthyR.ts/man/ts_auto_smooth_es.Rd | 2 healthyR.ts-0.3.1/healthyR.ts/man/ts_auto_svm_poly.Rd | 2 healthyR.ts-0.3.1/healthyR.ts/man/ts_auto_svm_rbf.Rd | 2 healthyR.ts-0.3.1/healthyR.ts/man/ts_auto_theta.Rd | 2 healthyR.ts-0.3.1/healthyR.ts/man/ts_auto_xgboost.Rd | 2 healthyR.ts-0.3.1/healthyR.ts/man/ts_brownian_motion.Rd | 2 healthyR.ts-0.3.1/healthyR.ts/man/ts_brownian_motion_augment.Rd | 2 healthyR.ts-0.3.1/healthyR.ts/man/ts_forecast_simulator.Rd | 2 healthyR.ts-0.3.1/healthyR.ts/man/ts_geometric_brownian_motion.Rd | 2 healthyR.ts-0.3.1/healthyR.ts/man/ts_geometric_brownian_motion_augment.Rd | 2 healthyR.ts-0.3.1/healthyR.ts/man/ts_random_walk.Rd | 11 - 57 files changed, 303 insertions(+), 165 deletions(-)
Title: 'shiny' App Companion to the 'tfrmt' Package
Description: Provides an interactive interface to the 'tfrmt' package. Users
can import, modify, and export tables and templates with little to no code.
Author: Becca Krouse [aut, cre],
Christina Fillmore [aut] ,
Karima Ahmad [aut] ,
Ellis Hughes [aut] ,
GlaxoSmithKline Research & Development Limited [cph, fnd]
Maintainer: Becca Krouse <becca.z.krouse@gsk.com>
Diff between tfrmtbuilder versions 0.0.6 dated 2024-03-30 and 0.1.0 dated 2024-10-11
DESCRIPTION | 16 +-- MD5 | 32 ++++--- NAMESPACE | 1 NEWS.md | 5 + R/mod_datamapping.R | 6 + R/mod_load.R | 51 ++++++++---- R/mod_table_outer.R | 6 - R/tfrmtbuilder.R | 9 +- R/tfrmtbuilder_server.R | 6 - R/tfrmtbuilder_ui.R | 4 R/zzz.R | 1 README.md | 2 man/tfrmtbuilder.Rd | 8 + tests/testthat/_snaps |only tests/testthat/e2e |only tests/testthat/module_examples/mod_datamapping_inputs/app.R | 2 tests/testthat/test-e2e-auto.R | 6 - tests/testthat/test-mod_datamapping_inputs-shinytest2.R | 12 +- 18 files changed, 102 insertions(+), 65 deletions(-)
Title: Extensible Data Pattern Searching Framework
Description: Extensible framework for
subgroup discovery (Atzmueller (2015) <doi:10.1002/widm.1144>),
contrast patterns (Chen (2022) <doi:10.48550/arXiv.2209.13556>),
emerging patterns (Dong (1999) <doi:10.1145/312129.312191>) and
association rules (Agrawal (1994) <https://www.vldb.org/conf/1994/P487.PDF>).
Both crisp (binary) and fuzzy data are supported.
It generates conditions in the form of elementary conjunctions, evaluates
them on a dataset and checks the induced sub-data for interesting statistical
properties. Currently, the package searches for implicative association rules
and conditional correlations (Hájek (1978) <doi:10.1007/978-3-642-66943-9>).
A user-defined function may be defined to evaluate on each generated
condition to search for custom patterns.
Author: Michal Burda [aut, cre]
Maintainer: Michal Burda <michal.burda@osu.cz>
Diff between nuggets versions 1.1.0 dated 2024-10-08 and 1.2.0 dated 2024-10-11
DESCRIPTION | 10 - MD5 | 61 ++++--- NAMESPACE | 2 NEWS.md | 10 + R/dig_correlations.R | 92 ++--------- R/dig_grid.R |only R/dig_implications.R | 96 ++++++++++-- R/testers.R | 18 +- R/var_grid.R |only README.md | 32 ++-- man/dig_correlations.Rd | 4 man/dig_grid.Rd |only man/dig_implications.Rd | 19 ++ man/var_grid.Rd |only src/AlignedAllocator.h | 261 +++++++++++++++++++-------------- src/dig.cpp | 2 src/dig/ArgumentValue.h | 8 - src/dig/Bitset.h | 2 src/dig/Config.h | 2 src/dig/ContiNnArgumentator.h | 9 - src/dig/ContiNpArgumentator.h | 9 - src/dig/ContiPnArgumentator.h | 2 src/dig/ContiPpArgumentator.h | 2 src/dig/Data.h | 8 - src/dig/Digger.h | 3 src/dig/DualChain.h | 4 src/dig/Executor.h | 2 src/dig/Iterator.h | 2 src/dig/SparseBitChain.h | 10 - src/dig/Task.h | 14 - tests/testthat/test-dig.R | 172 ++++++++++----------- tests/testthat/test-dig_correlations.R | 41 +++++ tests/testthat/test-dig_implications.R | 111 +++++++++++++- tests/testthat/test-var_grid.R |only 34 files changed, 614 insertions(+), 394 deletions(-)
Title: General Smoothing Splines
Description: A comprehensive package for structural multivariate
function estimation using smoothing splines.
Author: Chong Gu [aut, cre]
Maintainer: Chong Gu <chong@purdue.edu>
Diff between gss versions 2.2-7 dated 2023-08-16 and 2.2-8 dated 2024-10-11
ChangeLog | 6 ++++++ DESCRIPTION | 12 +++++++----- MD5 | 34 +++++++++++++++++----------------- src/dcore.f | 2 +- src/ddeev.f | 4 ++-- src/deval.f | 3 +-- src/dgold.f | 2 +- src/dmudr0.f | 2 +- src/dsidr0.f | 2 +- src/dtrev.f | 2 +- src/gaussq.f | 39 +++++++++++++++++++++++++++------------ src/ratfor/dcore.r | 2 +- src/ratfor/ddeev.r | 2 +- src/ratfor/deval.r | 2 +- src/ratfor/dgold.r | 2 +- src/ratfor/dmudr0.r | 2 +- src/ratfor/dsidr0.r | 2 +- src/ratfor/dtrev.r | 2 +- 18 files changed, 72 insertions(+), 50 deletions(-)
Title: Generalized Regression on Orthogonal Components
Description: Robust multiple or multivariate linear regression, nonparametric regression on orthogonal components, classical or robust partial least squares models as described in Bilodeau, Lafaye De Micheaux and Mahdi (2015) <doi:10.18637/jss.v065.i01>.
Author: Pierre Lafaye De Micheaux [aut, cre],
Martin Bilodeau [aut],
Jiahui Wang [cph] ,
Ruben Zamar [cph] ,
Alfio Marazzi [cph] ,
Victor Yohai [cph] ,
Matias Salibian-Barrera [cph] ,
Ricardo Maronna [cph] ,
Eric Zivot [cph] ,
David Rocke [cph] ,
Doug Martin [...truncated...]
Maintainer: Pierre Lafaye De Micheaux <lafaye@unsw.edu.au>
Diff between groc versions 1.0.9 dated 2024-02-24 and 1.0.10 dated 2024-10-11
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- build/partial.rdb |binary inst/HISTORY | 14 ++++++++++++++ inst/TODO.txt | 2 -- man/covrob.Rd | 2 +- man/delete.intercept.Rd | 2 +- src/Other/simplegrid.cpp | 18 +++++++++--------- src/gridalgo.cpp | 30 +++++++++++++++--------------- 9 files changed, 52 insertions(+), 40 deletions(-)
Title: A Goodness-of-Fit Test for Elliptical Distributions with
Diagnostic Capabilities
Description: A goodness-of-fit test for elliptical distributions with diagnostic
capabilities. Gilles R. Ducharme, Pierre Lafaye de Micheaux (2020) <doi:10.1016/j.jmva.2020.104602>.
Author: Gilles R Ducharme [aut],
Pierre Lafaye De Micheaux [aut, cre]
Maintainer: Pierre Lafaye De Micheaux <lafaye@unsw.edu.au>
Diff between ECGofTestDx versions 0.4 dated 2019-03-06 and 0.5 dated 2024-10-11
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ inst/CITATION | 40 +++++++++++----------------------------- inst/HISTORY | 9 +++++++++ man/SmoothECTest.Rd | 4 ++-- src/chebyshev_t_polynomials.cpp | 2 +- src/chebyshev_u_polynomials.cpp | 2 +- 7 files changed, 35 insertions(+), 44 deletions(-)
Title: Lightweight Well-Known Geometry Parsing
Description: Provides a minimal R and C++ API for parsing
well-known binary and well-known text representation of
geometries to and from R-native formats.
Well-known binary is compact
and fast to parse; well-known text is human-readable
and is useful for writing tests. These formats are
useful in R only if the information they contain can be
accessed in R, for which high-performance functions
are provided here.
Author: Dewey Dunnington [aut, cre] ,
Edzer Pebesma [aut] ,
Anthony North [ctb]
Maintainer: Dewey Dunnington <dewey@fishandwhistle.net>
Diff between wk versions 0.9.3 dated 2024-09-06 and 0.9.4 dated 2024-10-11
DESCRIPTION | 6 ++--- MD5 | 10 ++++---- NEWS.md | 4 +++ R/pkg-sf.R | 8 +++++- tests/testthat/Rplots.pdf |binary tests/testthat/test-pkg-sf.R | 50 ++++++++++++++++++++++++++++++++----------- 6 files changed, 56 insertions(+), 22 deletions(-)
Title: Quick and Essential 'R' Tricks for Better Scripts
Description: The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to improve your scripts. Improve the quality and reproducibility of 'R' scripts.
Author: Obinna Obianom [aut, cre],
Brice Richard [aut]
Maintainer: Obinna Obianom <idonshayo@gmail.com>
Diff between quickcode versions 1.0.0 dated 2024-09-02 and 1.0.1 dated 2024-10-11
DESCRIPTION | 6 +- MD5 | 24 ++++---- NAMESPACE | 1 NEWS.md | 5 + R/clean.R | 10 ++- R/func_chain.R | 8 ++ R/pkg_by.R |only R/randomImage.R | 28 ---------- inst/doc/add_today_date_to_filenames_quickcode.html | 54 ++++++++++---------- inst/doc/nullish_coalescing_operator_r.html | 4 - inst/doc/quickcode_r_introduction.html | 4 - inst/doc/track_function_usage_r.html | 4 - man/find_packages.Rd |only man/simplechaining.Rd | 4 + 14 files changed, 74 insertions(+), 78 deletions(-)
Title: Group Elastic Net Regularized GLMs and GAMs
Description: Efficient algorithms for fitting generalized linear and additive models with group elastic net penalties as described in Helwig (2024) <doi:10.1080/10618600.2024.2362232>. Implements group LASSO, group MCP, and group SCAD with an optional group ridge penalty. Computes the regularization path for linear regression (gaussian), logistic regression (binomial), multinomial logistic regression (multinomial), log-linear count regression (poisson and negative.binomial), and log-linear continuous regression (gamma and inverse gaussian). Supports default and formula methods for model specification, k-fold cross-validation for tuning the regularization parameters, and nonparametric regression via tensor product reproducing kernel (smoothing spline) basis function expansion.
Author: Nathaniel E. Helwig [aut, cre]
Maintainer: Nathaniel E. Helwig <helwig@umn.edu>
Diff between grpnet versions 0.5 dated 2024-07-13 and 0.6 dated 2024-10-11
ChangeLog | 22 ++++++++++++ DESCRIPTION | 8 ++-- MD5 | 20 +++++------ R/coef.cv.grpnet.R | 4 +- R/cv.grpnet.default.R | 90 ++++++++++++++++++++++++++++++++++++++++++++++++-- R/cv.grpnet.formula.R | 12 +++++- R/grpnet.default.R | 16 ++++++-- R/rk.R | 3 + man/coef.Rd | 4 +- man/cv.grpnet.Rd | 19 +++++++--- man/grpnet.Rd | 4 -- 11 files changed, 163 insertions(+), 39 deletions(-)
Title: Miscellaneous Functions for the Analysis of Educational
Assessments
Description: Miscellaneous functions for data cleaning and data analysis of educational assessments. Includes functions for descriptive
analyses, character vector manipulations and weighted statistics. Mainly a lightweight dependency for the packages 'eatRep',
'eatGADS', 'eatPrep' and 'eatModel' (which will be subsequently submitted to 'CRAN').
The function for defining (weighted) contrasts in weighted effect coding refers to
te Grotenhuis et al. (2017) <doi:10.1007/s00038-016-0901-1>.
Functions for weighted statistics refer to
Wolter (2007) <doi:10.1007/978-0-387-35099-8>.
Author: Sebastian Weirich [aut, cre],
Martin Hecht [aut],
Karoline Sachse [aut],
Benjamin Becker [aut],
Nicole Mahler [aut],
Edna Grewers [ctb]
Maintainer: Sebastian Weirich <sebastian.weirich@iqb.hu-berlin.de>
Diff between eatTools versions 0.7.6 dated 2024-04-05 and 0.7.7 dated 2024-10-11
DESCRIPTION | 10 - MD5 | 102 +++++----- NAMESPACE | 1 NEWS.md | 12 + R/addLeadingZeros.R | 46 ++-- R/insert.col.r | 32 +-- R/makeDataFrame.r | 6 R/makeTria.r | 7 R/mergeAttr.r | 12 - R/recodeLookup.r | 16 - R/remove_funs.R | 31 ++- README.md | 23 +- man/addLeadingZeros.Rd | 54 ++--- man/asNumericIfPossible.Rd | 112 +++++------ man/catch_asNumericIfPossible.Rd | 84 ++++---- man/contr.wec.weighted.Rd | 72 +++---- man/crop.Rd | 60 +++--- man/eatTools-package.Rd | 54 ++--- man/existsBackgroundVariables.Rd | 64 +++--- man/facToChar.Rd | 84 ++++---- man/figures |only man/gsubAll.rd | 62 +++--- man/halveString.rd | 74 +++---- man/insert.col.rd | 38 +-- man/makeDataFrame.rd | 69 +++--- man/makeTria.rd | 64 +++--- man/mergeAttr.rd | 237 ++++++++++++------------ man/multiseq.Rd | 52 ++--- man/na_omit_selection.rd | 58 ++--- man/num.to.cat.rd | 68 +++--- man/operator.Rd | 64 +++--- man/print_and_capture.rd | 58 ++--- man/pwc.rd | 48 ++-- man/rbind_common.rd | 70 +++---- man/rbind_fill_vector.rd | 38 +-- man/removeNonNumeric.Rd | 60 +++--- man/removeNumeric.Rd | 60 +++--- man/removePattern.Rd | 44 ++-- man/seq2.Rd | 48 ++-- man/tableUnlist.rd | 46 ++-- man/whereAre.rd | 72 +++---- tests/testthat.R | 8 tests/testthat/test_addLeadingZeros.R | 48 ++-- tests/testthat/test_catch_asNumericIfPossible.R | 30 +-- tests/testthat/test_makeDataFrame.R | 58 ++--- tests/testthat/test_makeTria.R | 16 - tests/testthat/test_mergeAttr.R | 84 ++++---- tests/testthat/test_print_and_capture.R | 34 +-- tests/testthat/test_pwc.R | 34 +-- tests/testthat/test_rbindCommon.R | 54 ++--- tests/testthat/test_recodeLookup.R | 15 - tests/testthat/test_remove_funs.R | 141 +++++++------- 52 files changed, 1398 insertions(+), 1336 deletions(-)
Title: A Distributed Worker Launcher Framework
Description: In computationally demanding analysis projects,
statisticians and data scientists asynchronously
deploy long-running tasks to distributed systems,
ranging from traditional clusters to cloud services.
The 'NNG'-powered 'mirai' R package by Gao (2023)
<doi:10.5281/zenodo.7912722> is a sleek
and sophisticated scheduler that
efficiently processes these intense workloads.
The 'crew' package extends 'mirai' with a unifying
interface for third-party worker launchers.
Inspiration also comes from packages.
'future' by Bengtsson (2021) <doi:10.32614/RJ-2021-048>,
'rrq' by FitzJohn and Ashton (2023) <https://github.com/mrc-ide/rrq>,
'clustermq' by Schubert (2019) <doi:10.1093/bioinformatics/btz284>),
and 'batchtools' by Lang, Bischel, and Surmann (2017)
<doi:10.21105/joss.00135>.
Author: William Michael Landau [aut, cre]
,
Daniel Woodie [ctb],
Eli Lilly and Company [cph, fnd]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between crew versions 0.9.5 dated 2024-06-24 and 0.10.0 dated 2024-10-11
DESCRIPTION | 18 +- MD5 | 113 +++++++++-------- NAMESPACE | 8 + NEWS.md | 19 ++ R/class_monad.R | 33 ++++ R/crew_async.R | 3 R/crew_client.R | 70 ++++++---- R/crew_controller.R | 142 +++++++++++++-------- R/crew_controller_group.R | 12 + R/crew_controller_local.R | 28 ++++ R/crew_eval.R | 2 R/crew_launcher.R | 56 +++++++- R/crew_launcher_local.R | 115 +++++++++-------- R/crew_options_local.R |only R/crew_options_metrics.R |only R/crew_package.R | 9 - R/crew_worker.R | 32 ++++ R/utils_mirai.R | 24 +-- build/vignette.rds |binary inst/doc/introduction.Rmd | 8 - inst/doc/introduction.html | 10 - inst/doc/logging.R |only inst/doc/logging.Rmd |only inst/doc/logging.html |only inst/doc/plugins.R | 10 - inst/doc/plugins.Rmd | 19 +- inst/doc/plugins.html | 107 ++++++++-------- inst/doc/risks.Rmd | 6 inst/doc/risks.html | 25 ++- inst/doc/shiny.Rmd | 13 + inst/doc/shiny.html | 149 +++++++++++----------- man/crew_class_client.Rd | 22 ++- man/crew_class_controller.Rd | 59 ++++++++ man/crew_class_controller_group.Rd | 24 +++ man/crew_class_launcher.Rd | 12 + man/crew_class_launcher_local.Rd | 15 +- man/crew_controller_local.Rd | 34 +++-- man/crew_launcher.Rd | 13 + man/crew_launcher_local.Rd | 34 +++-- man/crew_options_local.Rd |only man/crew_options_metrics.Rd |only man/crew_worker.Rd | 12 + tests/local/test-backlog_tasks_max.R | 3 tests/local/test-cleanup.R | 6 tests/local/test-crew_clean.R | 2 tests/local/test-tls.R | 2 tests/local/test-transient.R | 6 tests/testthat/test-crew_client.R | 12 + tests/testthat/test-crew_controller.R | 185 ++++++++++++++++++++++++++++ tests/testthat/test-crew_controller_group.R | 2 tests/testthat/test-crew_controller_local.R | 162 +++++++++--------------- tests/testthat/test-crew_launcher.R | 9 + tests/testthat/test-crew_launcher_local.R | 42 ++++-- tests/testthat/test-crew_monitor_local.R | 2 tests/testthat/test-crew_options_local.R |only tests/testthat/test-crew_options_metrics.R |only tests/testthat/test-crew_worker.R | 75 +++++++++++ vignettes/figures/memory.png |only vignettes/introduction.Rmd | 8 - vignettes/logging.Rmd |only vignettes/plugins.Rmd | 19 +- vignettes/risks.Rmd | 6 vignettes/shiny.Rmd | 13 + 63 files changed, 1248 insertions(+), 562 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-10 0.1.2
2020-03-25 0.1.1
Title: Mathematical Modeling of Infectious Disease Dynamics
Description: Tools for simulating mathematical models of infectious disease dynamics.
Epidemic model classes include deterministic compartmental models, stochastic
individual-contact models, and stochastic network models. Network models use the
robust statistical methods of exponential-family random graph models (ERGMs)
from the Statnet suite of software packages in R. Standard templates for epidemic
modeling include SI, SIR, and SIS disease types. EpiModel features an API for
extending these templates to address novel scientific research aims. Full
methods for EpiModel are detailed in Jenness et al. (2018, <doi:10.18637/jss.v084.i08>).
Author: Samuel Jenness [cre, aut],
Steven M. Goodreau [aut],
Martina Morris [aut],
Adrien Le Guillou [aut],
Chad Klumb [aut],
Skye Bender-deMoll [ctb]
Maintainer: Samuel Jenness <samuel.m.jenness@emory.edu>
Diff between EpiModel versions 2.4.0 dated 2023-06-20 and 2.5.0 dated 2024-10-11
EpiModel-2.4.0/EpiModel/R/el_cuml.R |only EpiModel-2.4.0/EpiModel/man/deleteAttr.Rd |only EpiModel-2.4.0/EpiModel/man/reexports.Rd |only EpiModel-2.5.0/EpiModel/DESCRIPTION | 27 EpiModel-2.5.0/EpiModel/MD5 | 254 - EpiModel-2.5.0/EpiModel/NAMESPACE | 19 EpiModel-2.5.0/EpiModel/NEWS.md | 34 EpiModel-2.5.0/EpiModel/R/EpiModel-package.R | 14 EpiModel-2.5.0/EpiModel/R/ErgmTerms.R | 10 EpiModel-2.5.0/EpiModel/R/as.data.frame.R | 66 EpiModel-2.5.0/EpiModel/R/comp_plot.R |only EpiModel-2.5.0/EpiModel/R/dcm.R | 13 EpiModel-2.5.0/EpiModel/R/dcm.inputs.R | 51 EpiModel-2.5.0/EpiModel/R/dendo.R | 10 EpiModel-2.5.0/EpiModel/R/edgelists.R |only EpiModel-2.5.0/EpiModel/R/geom_bands.R |only EpiModel-2.5.0/EpiModel/R/get.R | 26 EpiModel-2.5.0/EpiModel/R/icm.R | 4 EpiModel-2.5.0/EpiModel/R/icm.inputs.R | 19 EpiModel-2.5.0/EpiModel/R/icm.mod.status.R | 82 EpiModel-2.5.0/EpiModel/R/merge.R | 14 EpiModel-2.5.0/EpiModel/R/net.accessor.R | 418 - EpiModel-2.5.0/EpiModel/R/net.end.horizon.R | 2 EpiModel-2.5.0/EpiModel/R/net.fn.modules.R | 8 EpiModel-2.5.0/EpiModel/R/net.helpers.R | 40 EpiModel-2.5.0/EpiModel/R/net.inputs.R | 133 EpiModel-2.5.0/EpiModel/R/net.mod.init.R | 145 EpiModel-2.5.0/EpiModel/R/net.mod.nwupdate.R | 16 EpiModel-2.5.0/EpiModel/R/net.mod.prevalence.R | 71 EpiModel-2.5.0/EpiModel/R/net.mod.simnet.R | 45 EpiModel-2.5.0/EpiModel/R/net.mod.summary.R | 2 EpiModel-2.5.0/EpiModel/R/net.record.R | 17 EpiModel-2.5.0/EpiModel/R/net.scenarios.R | 11 EpiModel-2.5.0/EpiModel/R/net.utils.R | 35 EpiModel-2.5.0/EpiModel/R/netdx.R | 95 EpiModel-2.5.0/EpiModel/R/netest.R | 135 EpiModel-2.5.0/EpiModel/R/netsim.R | 38 EpiModel-2.5.0/EpiModel/R/netsim_checkpoint.R | 2 EpiModel-2.5.0/EpiModel/R/param_df.R |only EpiModel-2.5.0/EpiModel/R/plot.R | 2377 ---------- EpiModel-2.5.0/EpiModel/R/plot.dcm.R |only EpiModel-2.5.0/EpiModel/R/plot.epi.data.frame.R |only EpiModel-2.5.0/EpiModel/R/plot.icm.R |only EpiModel-2.5.0/EpiModel/R/plot.netdx.R |only EpiModel-2.5.0/EpiModel/R/plot.netsim.R |only EpiModel-2.5.0/EpiModel/R/plot_stat_table.R |only EpiModel-2.5.0/EpiModel/R/print.R | 32 EpiModel-2.5.0/EpiModel/R/reachable.R |only EpiModel-2.5.0/EpiModel/R/saveout.R | 96 EpiModel-2.5.0/EpiModel/R/summary.R | 4 EpiModel-2.5.0/EpiModel/R/update.R | 48 EpiModel-2.5.0/EpiModel/R/utils.R | 67 EpiModel-2.5.0/EpiModel/R/verbose.R | 4 EpiModel-2.5.0/EpiModel/build/partial.rdb |binary EpiModel-2.5.0/EpiModel/build/vignette.rds |binary EpiModel-2.5.0/EpiModel/inst/doc/Intro.R | 4 EpiModel-2.5.0/EpiModel/inst/doc/Intro.Rmd | 6 EpiModel-2.5.0/EpiModel/inst/doc/Intro.html | 19 EpiModel-2.5.0/EpiModel/inst/doc/attributes-and-summary-statistics.R | 2 EpiModel-2.5.0/EpiModel/inst/doc/attributes-and-summary-statistics.Rmd | 2 EpiModel-2.5.0/EpiModel/inst/doc/attributes-and-summary-statistics.html | 174 EpiModel-2.5.0/EpiModel/inst/doc/model-parameters.R | 4 EpiModel-2.5.0/EpiModel/inst/doc/model-parameters.html | 155 EpiModel-2.5.0/EpiModel/inst/doc/network-objects.R | 4 EpiModel-2.5.0/EpiModel/inst/doc/network-objects.Rmd | 7 EpiModel-2.5.0/EpiModel/inst/doc/network-objects.html | 20 EpiModel-2.5.0/EpiModel/inst/shiny/epinet/rsconnect |only EpiModel-2.5.0/EpiModel/man/EpiModel-package.Rd | 32 EpiModel-2.5.0/EpiModel/man/as.data.frame.icm.Rd | 13 EpiModel-2.5.0/EpiModel/man/as.epi.data.frame.Rd |only EpiModel-2.5.0/EpiModel/man/as.network.transmat.Rd | 4 EpiModel-2.5.0/EpiModel/man/as.phylo.transmat.Rd | 2 EpiModel-2.5.0/EpiModel/man/as_cumulative_edgelist.Rd |only EpiModel-2.5.0/EpiModel/man/as_tibble_edgelist.Rd |only EpiModel-2.5.0/EpiModel/man/brewer_ramp.Rd | 4 EpiModel-2.5.0/EpiModel/man/comp_plot.Rd | 10 EpiModel-2.5.0/EpiModel/man/control.dcm.Rd | 13 EpiModel-2.5.0/EpiModel/man/control.icm.Rd | 6 EpiModel-2.5.0/EpiModel/man/control.net.Rd | 17 EpiModel-2.5.0/EpiModel/man/create_dat_object.Rd | 11 EpiModel-2.5.0/EpiModel/man/dcm.Rd | 7 EpiModel-2.5.0/EpiModel/man/dedup_cumulative_edgelist.Rd |only EpiModel-2.5.0/EpiModel/man/edges_correct.Rd | 2 EpiModel-2.5.0/EpiModel/man/geom_bands.Rd | 2 EpiModel-2.5.0/EpiModel/man/get_adj_list.Rd |only EpiModel-2.5.0/EpiModel/man/get_connected_nodes.Rd |only EpiModel-2.5.0/EpiModel/man/get_cumulative_degree.Rd | 2 EpiModel-2.5.0/EpiModel/man/get_cumulative_edgelist.Rd | 2 EpiModel-2.5.0/EpiModel/man/get_cumulative_edgelists_df.Rd | 2 EpiModel-2.5.0/EpiModel/man/get_discordant_edgelist.Rd |only EpiModel-2.5.0/EpiModel/man/get_edgelist.Rd | 2 EpiModel-2.5.0/EpiModel/man/get_edgelists_df.Rd |only EpiModel-2.5.0/EpiModel/man/get_partners.Rd | 2 EpiModel-2.5.0/EpiModel/man/get_subnet_adj_list.Rd |only EpiModel-2.5.0/EpiModel/man/icm.Rd | 4 EpiModel-2.5.0/EpiModel/man/init.dcm.Rd | 7 EpiModel-2.5.0/EpiModel/man/init.icm.Rd | 4 EpiModel-2.5.0/EpiModel/man/init.net.Rd | 2 EpiModel-2.5.0/EpiModel/man/initialize.net.Rd | 6 EpiModel-2.5.0/EpiModel/man/net-accessor.Rd | 21 EpiModel-2.5.0/EpiModel/man/netdx.Rd | 14 EpiModel-2.5.0/EpiModel/man/netest.Rd | 77 EpiModel-2.5.0/EpiModel/man/netsim.Rd | 19 EpiModel-2.5.0/EpiModel/man/overwrite_attrs.Rd |only EpiModel-2.5.0/EpiModel/man/param.dcm.Rd | 23 EpiModel-2.5.0/EpiModel/man/param.icm.Rd | 7 EpiModel-2.5.0/EpiModel/man/param.net.Rd | 7 EpiModel-2.5.0/EpiModel/man/param.net_from_table.Rd | 6 EpiModel-2.5.0/EpiModel/man/param.net_to_table.Rd |only EpiModel-2.5.0/EpiModel/man/plot.dcm.Rd | 47 EpiModel-2.5.0/EpiModel/man/plot.epi.data.frame.Rd |only EpiModel-2.5.0/EpiModel/man/plot.icm.Rd | 45 EpiModel-2.5.0/EpiModel/man/plot.netdx.Rd | 20 EpiModel-2.5.0/EpiModel/man/plot.netsim.Rd | 53 EpiModel-2.5.0/EpiModel/man/plot.transmat.Rd | 2 EpiModel-2.5.0/EpiModel/man/print.netdx.Rd | 2 EpiModel-2.5.0/EpiModel/man/process_out.net.Rd | 3 EpiModel-2.5.0/EpiModel/man/reachable-nodes.Rd |only EpiModel-2.5.0/EpiModel/man/record_raw_object.Rd | 2 EpiModel-2.5.0/EpiModel/man/sim_nets_t1.Rd | 2 EpiModel-2.5.0/EpiModel/man/tedgelist_to_toggles.Rd | 2 EpiModel-2.5.0/EpiModel/man/update_cumulative_edgelist.Rd | 2 EpiModel-2.5.0/EpiModel/man/update_unique_ids.Rd | 2 EpiModel-2.5.0/EpiModel/tests/testthat/test-accessors.R | 69 EpiModel-2.5.0/EpiModel/tests/testthat/test-attr-copy.R | 37 EpiModel-2.5.0/EpiModel/tests/testthat/test-cumulative_edgelist.R | 20 EpiModel-2.5.0/EpiModel/tests/testthat/test-ergm.ego.R | 6 EpiModel-2.5.0/EpiModel/tests/testthat/test-extremal-targets.R | 2 EpiModel-2.5.0/EpiModel/tests/testthat/test-merge.R | 20 EpiModel-2.5.0/EpiModel/tests/testthat/test-multinets.R | 42 EpiModel-2.5.0/EpiModel/tests/testthat/test-mutate.R | 4 EpiModel-2.5.0/EpiModel/tests/testthat/test-net-tergmLite.R | 16 EpiModel-2.5.0/EpiModel/tests/testthat/test-netattr.R | 16 EpiModel-2.5.0/EpiModel/tests/testthat/test-netdx.R | 6 EpiModel-2.5.0/EpiModel/tests/testthat/test-netrestart.R | 12 EpiModel-2.5.0/EpiModel/tests/testthat/test-netsim.R | 31 EpiModel-2.5.0/EpiModel/tests/testthat/test-parameters_df.R | 4 EpiModel-2.5.0/EpiModel/tests/testthat/test-print.R | 3 EpiModel-2.5.0/EpiModel/tests/testthat/test-utils.R | 17 EpiModel-2.5.0/EpiModel/vignettes/Intro.Rmd | 6 EpiModel-2.5.0/EpiModel/vignettes/attributes-and-summary-statistics.Rmd | 2 EpiModel-2.5.0/EpiModel/vignettes/network-objects.Rmd | 7 142 files changed, 1661 insertions(+), 4052 deletions(-)
Title: Lorenz and Penalized Lorenz Regressions
Description: Inference for the Lorenz and penalized Lorenz regressions. More broadly, the package proposes functions to assess inequality and graphically represent it. The Lorenz Regression procedure is introduced in Heuchenne and Jacquemain (2022) <doi:10.1016/j.csda.2021.107347> and in Jacquemain, A., C. Heuchenne, and E. Pircalabelu (2024) <doi:10.1214/23-EJS2200>.
Author: Alexandre Jacquemain [aut, cre]
,
Xingjie Shi [ctb]
Maintainer: Alexandre Jacquemain <aljacquemain@gmail.com>
Diff between LorenzRegression versions 2.0.0 dated 2024-09-09 and 2.1.0 dated 2024-10-11
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- NEWS.md | 6 ++++++ R/Lorenz-bootstrap-combine.R | 4 ++-- R/Lorenz-bootstrap.R | 33 +++++++++++++++++++++++++++------ R/Lorenz-regression.R | 6 +++--- R/PLR-CV.R | 33 +++++++++++++++++++++++++++++---- man/Lorenz.Reg.Rd | 6 +++--- man/Lorenz.boot.Rd | 8 +++----- man/Lorenz.boot.combine.Rd | 4 ++-- man/PLR.CV.Rd | 6 ++---- 11 files changed, 90 insertions(+), 42 deletions(-)
More information about LorenzRegression at CRAN
Permanent link
Title: Longitudinal Data
Description: Tools for longitudinal data and joint longitudinal data (used by packages kml and kml3d).
Author: Christophe Genolini [cre, aut],
Bruno Falissard [ctb],
Dai Fang [ctb],
Patrice Kiener [ctb],
Luke Tierney [ctb]
Maintainer: Christophe Genolini <christophe.genolini@free.fr>
Diff between longitudinalData versions 2.4.5.1 dated 2023-12-13 and 2.4.7 dated 2024-10-11
DESCRIPTION | 27 +++++++++++++++------------ MD5 | 4 ++-- NEWS | 5 +++++ 3 files changed, 22 insertions(+), 14 deletions(-)
More information about longitudinalData at CRAN
Permanent link
Title: Bayesian Vector Heterogeneous Autoregressive Modeling
Description: Tools to model and forecast multivariate time series
including Bayesian Vector heterogeneous autoregressive (VHAR) model
by Kim & Baek (2023) (<doi:10.1080/00949655.2023.2281644>).
'bvhar' can model Vector Autoregressive (VAR), VHAR, Bayesian VAR (BVAR), and Bayesian VHAR (BVHAR) models.
Author: Young Geun Kim [aut, cre, cph]
,
Changryong Baek [ctb]
Maintainer: Young Geun Kim <ygeunkimstat@gmail.com>
Diff between bvhar versions 2.1.1 dated 2024-10-05 and 2.1.2 dated 2024-10-11
DESCRIPTION | 6 - MD5 | 38 ++++----- NEWS.md | 8 + R/RcppExports.R | 40 +++------ R/summary-forecast.R | 144 +++++++++++++--------------------- R/zzz.R | 9 ++ inst/doc/linking.R | 3 inst/doc/linking.Rmd | 10 ++ inst/doc/linking.html | 8 + inst/include/commondefs.h | 2 inst/include/mcmcreg.h | 177 +++++-------------------------------------- inst/include/mcmcsv.h | 35 +++++--- inst/include/regforecaster.h | 24 ++++- inst/include/svforecaster.h | 22 +++-- man/forecast_expand.Rd | 4 man/forecast_roll.Rd | 4 src/RcppExports.cpp | 72 +++++++---------- src/forecast-ldlt.cpp | 20 +--- src/forecast-sv.cpp | 20 +--- vignettes/linking.Rmd | 10 ++ 20 files changed, 276 insertions(+), 380 deletions(-)
Title: Bayesian Additive Models for Location, Scale, and Shape (and
Beyond)
Description: Infrastructure for estimating probabilistic distributional regression models in a Bayesian framework.
The distribution parameters may capture location, scale, shape, etc. and every parameter may depend
on complex additive terms (fixed, random, smooth, spatial, etc.) similar to a generalized additive model.
The conceptual and computational framework is introduced in Umlauf, Klein, Zeileis (2019)
<doi:10.1080/10618600.2017.1407325> and the R package in Umlauf, Klein, Simon, Zeileis (2021)
<doi:10.18637/jss.v100.i04>.
Author: Nikolaus Umlauf [aut, cre] ,
Nadja Klein [aut] ,
Achim Zeileis [aut] ,
Meike Koehler [ctb],
Thorsten Simon [aut] ,
Stanislaus Stadlmann [ctb],
Alexander Volkmann [ctb]
Maintainer: Nikolaus Umlauf <Nikolaus.Umlauf@uibk.ac.at>
Diff between bamlss versions 1.2-4 dated 2024-04-29 and 1.2-5 dated 2024-10-11
DESCRIPTION | 8 MD5 | 26 - NEWS.md | 8 R/BAMLSS.R | 18 - R/families.R | 2 R/optimizers.R | 3 R/samplers.R | 12 build/partial.rdb |binary build/vignette.rds |binary inst/doc/bamlss.html | 664 ++++++++++++++++++++++++++++++------------------- man/bamlss-package.Rd | 2 man/bamlss.Rd | 8 man/bamlss.frame.Rd | 4 src/bamlss_functions.c | 208 +++++++-------- 14 files changed, 578 insertions(+), 385 deletions(-)
Title: Synthesize Data Based on Empirical Quantile Functions and Rank
Order Matching
Description: Data is synthesized using a combination of inverse transform
sampling from the empirical quantile functions for each variable, and
then copying the rank order structure from the original dataset. The
package also includes a number of functions to measure the utility of
synthesized datasets.
Author: Mark van der Loo [aut, cre]
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between synthesizer versions 0.3.0 dated 2024-10-01 and 0.3.1 dated 2024-10-11
DESCRIPTION | 6 +++--- MD5 | 15 ++++++++------- NEWS | 3 +++ R/synthesizer.R | 4 ++-- inst/doc/introduction.R | 2 +- inst/doc/introduction.html | 13 ++++++------- inst/doc/introduction.md | 10 +++++----- inst/tinytest/test_clustering.R |only vignettes/introduction.md | 10 +++++----- 9 files changed, 33 insertions(+), 30 deletions(-)
Title: A Wrapper for Querying KISTERS 'WISKI' Databases via the 'KiWIS'
API
Description: A wrapper for querying 'WISKI' databases via the 'KiWIS' 'REST' API. 'WISKI' is an 'SQL' relational database
used for the collection and storage of water data developed by KISTERS and 'KiWIS' is a 'REST' service that provides
access to 'WISKI' databases via HTTP requests (<https://www.kisters.eu/water-weather-and-environment/>).
Contains a list of default databases (called 'hubs') and also allows users to provide their own 'KiWIS' URL.
Supports the entire query process- from metadata to specific time series values. All data is returned as tidy tibbles.
Author: Ryan Whaley [aut, cre],
Sam Albers [ctb]
Maintainer: Ryan Whaley <rdgwhaley@gmail.com>
Diff between kiwisR versions 0.2.0 dated 2020-07-13 and 0.2.4 dated 2024-10-11
DESCRIPTION | 15 +- MD5 | 34 +++--- NEWS.md | 16 ++ R/ki_group_list.R | 38 ++---- R/ki_station_list.R | 36 ++---- R/ki_timeseries_list.R | 62 +++++------ R/ki_timeseries_values.R | 56 ++++------ R/utils.R | 86 ++++----------- README.md | 160 ++++++++++++++--------------- man/ki_group_list.Rd | 10 + man/ki_station_list.Rd | 15 ++ man/ki_timeseries_list.Rd | 7 - man/ki_timeseries_values.Rd | 13 +- tests/testthat/helper-kiwisR.R | 9 - tests/testthat/test_ki_group_list.R | 2 tests/testthat/test_ki_station_list.R | 10 - tests/testthat/test_ki_timeseries_list.R | 18 +-- tests/testthat/test_ki_timeseries_values.R | 18 +-- 18 files changed, 287 insertions(+), 318 deletions(-)
Title: Interface Between the 'JDemetra+' Cruncher and R, and Quality
Report Generator
Description: Tool for generating quality reports from cruncher outputs (and calculating series scores). The latest version of the cruncher can be downloaded here: <https://github.com/jdemetra/jwsacruncher/releases>.
Author: Tanguy Barthelemy [aut, cre, art],
Alain Quartier-la-Tente [aut] ,
Institut national de la statistique et des etudes economiques [cph]
,
Anna Smyk [aut]
Maintainer: Tanguy Barthelemy <tanguy.barthelemy@insee.fr>
Diff between JDCruncheR versions 0.3.0 dated 2024-10-09 and 0.3.1 dated 2024-10-11
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 11 ++++++++++- R/QR_export.R | 20 ++++++-------------- inst/doc/Lancement_cruncher.html | 6 +++--- inst/doc/Lancement_cruncher_pdf.pdf |binary inst/doc/Using_the_cruncher_with_JDCruncheR.html | 6 +++--- inst/doc/Using_the_cruncher_with_JDCruncheR_pdf.pdf |binary 8 files changed, 32 insertions(+), 31 deletions(-)
Title: Advanced Forest Plot Using 'grid' Graphics
Description: Allows the creation of forest plots with advanced features, such as
multiple confidence intervals per row, customizable fonts for individual text
elements, and flexible confidence interval drawing. It also supports mixing
text with mathematical expressions. The package extends the application of
forest plots beyond traditional meta-analyses, offering a more general version
of the original 'rmeta' package’s forestplot() function. It relies heavily on
the 'grid' package for rendering the plots.
Author: Max Gordon [aut, cre],
Thomas Lumley [aut, ctb]
Maintainer: Max Gordon <max@gforge.se>
Diff between forestplot versions 3.1.3 dated 2023-08-26 and 3.1.5 dated 2024-10-11
forestplot-3.1.3/forestplot/tests/testthat/Rplots.pdf |only forestplot-3.1.5/forestplot/DESCRIPTION | 23 forestplot-3.1.5/forestplot/MD5 | 35 - forestplot-3.1.5/forestplot/NAMESPACE | 2 forestplot-3.1.5/forestplot/NEWS.md | 8 forestplot-3.1.5/forestplot/R/drawForestplotObject.R | 21 forestplot-3.1.5/forestplot/R/forestplot-package.R | 6 forestplot-3.1.5/forestplot/R/forestplot.default.R | 1 forestplot-3.1.5/forestplot/R/private_plot.forestplot_legend.R | 1 forestplot-3.1.5/forestplot/R/private_prepLines.R | 1 forestplot-3.1.5/forestplot/README.md | 11 forestplot-3.1.5/forestplot/build/vignette.rds |binary forestplot-3.1.5/forestplot/inst/doc/forestplot.R | 203 +++--- forestplot-3.1.5/forestplot/inst/doc/forestplot.Rmd | 227 +++---- forestplot-3.1.5/forestplot/inst/doc/forestplot.html | 313 +++++----- forestplot-3.1.5/forestplot/man/forestplot-package.Rd | 17 forestplot-3.1.5/forestplot/tests/forestplot2_vtests.R | 4 forestplot-3.1.5/forestplot/tests/test_visual_with_Greg.R | 1 forestplot-3.1.5/forestplot/vignettes/forestplot.Rmd | 227 +++---- 19 files changed, 578 insertions(+), 523 deletions(-)
Title: Multinomial Processing Tree Models
Description: Fitting and testing multinomial processing tree (MPT) models, a
class of nonlinear models for categorical data. The parameters are the
link probabilities of a tree-like graph and represent the latent cognitive
processing steps executed to arrive at observable response categories
(Batchelder & Riefer, 1999 <doi:10.3758/bf03210812>; Erdfelder et al., 2009
<doi:10.1027/0044-3409.217.3.108>; Riefer & Batchelder, 1988
<doi:10.1037/0033-295x.95.3.318>).
Author: Florian Wickelmaier [aut, cre],
Achim Zeileis [aut]
Maintainer: Florian Wickelmaier <wickelmaier@web.de>
Diff between mpt versions 0.8-0 dated 2022-03-23 and 1.0-0 dated 2024-10-11
ChangeLog | 7 +++++++ DESCRIPTION | 14 ++++++++------ MD5 | 36 +++++++++++++++++++++++------------- build/partial.rdb |binary build/vignette.rds |only data/agememory.rda |only data/proact.rda |binary data/pwrsim.rda |only data/retroact.rda |binary inst/CITATION | 14 ++++---------- inst/doc |only man/agememory.Rd |only man/citysize.Rd | 28 ++++++++++++++-------------- man/moraldilemma.Rd | 2 +- man/mpt.Rd | 4 ++-- man/mptEM.Rd | 11 ++++++++++- man/mptspec.Rd | 8 ++++---- man/pwrsim.Rd |only man/retroact.Rd | 18 +++++++++--------- man/selectiontask.Rd | 20 ++++++++++---------- vignettes |only 21 files changed, 92 insertions(+), 70 deletions(-)
Title: SHAP Visualizations
Description: Visualizations for SHAP (SHapley Additive exPlanations), such
as waterfall plots, force plots, various types of importance plots,
dependence plots, and interaction plots. These plots act on a
'shapviz' object created from a matrix of SHAP values and a
corresponding feature dataset. Wrappers for the R packages 'xgboost',
'lightgbm', 'fastshap', 'shapr', 'h2o', 'treeshap', 'DALEX', and
'kernelshap' are added for convenience. By separating visualization
and computation, it is possible to display factor variables in graphs,
even if the SHAP values are calculated by a model that requires
numerical features. The plots are inspired by those provided by the
'shap' package in Python, but there is no dependency on it.
Author: Michael Mayer [aut, cre],
Adrian Stando [ctb]
Maintainer: Michael Mayer <mayermichael79@gmail.com>
Diff between shapviz versions 0.9.5 dated 2024-09-14 and 0.9.6 dated 2024-10-11
DESCRIPTION | 6 +++--- MD5 | 7 ++++--- NEWS.md | 6 ++++++ inst/doc/multiple_output.html | 2 +- man/figures/VIGNETTE-dep.png |only 5 files changed, 14 insertions(+), 7 deletions(-)
Title: Bayes Nets: 'RHugin' Emulation with 'gRain'
Description: Wrappers for functions in the 'gRain' package to emulate some 'RHugin'
functionality, allowing the building of Bayesian networks consisting on discrete
chance nodes incrementally, through adding nodes, edges and conditional probability
tables, the setting of evidence, both 'hard' (boolean) or 'soft' (likelihoods),
querying marginal probabilities and normalizing constants, and generating sets of
high-probability configurations. Computations will typically not be so fast as they are
with 'RHugin', but this package should assist users without access to 'Hugin' to use
code written to use 'RHugin'.
Author: Peter Green [aut, cre],
Therese Graversen [ctb],
Soren Hojsgaard [ctb]
Maintainer: Peter Green <P.J.Green@bristol.ac.uk>
Diff between gRaven versions 1.1.8 dated 2023-01-21 and 1.1.10 dated 2024-10-11
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- R/graven.R | 2 +- R/mapconfig.R | 2 +- build/partial.rdb |binary man/propagate.gRaven.Rd | 2 +- 6 files changed, 13 insertions(+), 13 deletions(-)
More information about data.table.threads at CRAN
Permanent link
Title: Asymptotic Timing
Description: Computing and visualizing comparative
asymptotic timings of different algorithms and code versions.
Also includes functionality for comparing empirical timings with
expected references such as linear or quadratic,
<https://en.wikipedia.org/wiki/Asymptotic_computational_complexity>
Also includes functionality for measuring asymptotic memory and other
quantities.
Author: Toby Hocking [aut, cre]
Maintainer: Toby Hocking <toby.hocking@r-project.org>
Diff between atime versions 2024.10.3 dated 2024-10-04 and 2024.10.5 dated 2024-10-11
DESCRIPTION | 6 MD5 | 86 ++-- NAMESPACE | 44 +- NEWS | 302 +++++++------- R/atime.R | 524 ++++++++++++------------ R/predict.R | 236 +++++------ R/references.R | 368 ++++++++--------- R/test.R | 618 ++++++++++++++--------------- R/versions.R | 380 ++++++++--------- build/vignette.rds |binary inst/doc/Custom_Plots.R | 144 +++--- inst/doc/Custom_Plots.Rmd | 200 ++++----- inst/doc/Custom_Plots.html | 498 +++++++++++------------ inst/doc/Custom_References.R | 134 +++--- inst/doc/Custom_References.Rmd | 284 ++++++------- inst/doc/Custom_References.html | 621 ++++++++++++++--------------- inst/doc/Custom_Units.R | 138 +++--- inst/doc/Custom_Units.Rmd | 320 +++++++-------- inst/doc/Custom_Units.html | 641 +++++++++++++++--------------- inst/doc/cum_median.R | 62 +- inst/doc/cum_median.Rmd | 104 ++-- inst/doc/cum_median.html | 408 +++++++++---------- inst/doc/regex.R | 128 +++--- inst/doc/regex.Rmd | 192 ++++----- inst/doc/regex.html | 532 ++++++++++++------------- inst/example_tests.R | 82 +-- inst/global_edit.R | 82 +-- man/atime.Rd | 156 +++---- man/atime_grid.Rd | 172 ++++---- man/atime_pkg.Rd | 188 ++++---- man/atime_test.Rd | 128 +++--- man/atime_test_list.Rd | 164 +++---- man/atime_versions.Rd | 178 ++++---- man/atime_versions_exprs.Rd | 174 ++++---- man/atime_versions_remove.Rd | 26 - man/glob_find_replace.Rd | 38 - man/references_best.Rd | 158 +++---- tests/testthat.R | 2 tests/testthat/test-CRAN.R | 847 ++++++++++++++++++++-------------------- vignettes/Custom_Plots.Rmd | 200 ++++----- vignettes/Custom_References.Rmd | 284 ++++++------- vignettes/Custom_Units.Rmd | 320 +++++++-------- vignettes/cum_median.Rmd | 104 ++-- vignettes/regex.Rmd | 192 ++++----- 44 files changed, 5246 insertions(+), 5219 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-04-30 0.1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-09-04 0.1.4
2024-07-06 0.1.3
2024-06-27 0.1.2
2023-08-17 0.1.1
2023-07-06 0.1.0
More information about openrouteservice at CRAN
Permanent link
Title: Download Crypto Currency Data from 'CoinMarketCap' without 'API'
Description: Retrieves crypto currency information and historical prices as well as information on the exchanges they are listed on. Historical data contains daily open, high, low and close values for all crypto currencies. All data is scraped from <https://coinmarketcap.com> via their 'web-api'.
Author: Sebastian Stoeckl [aut, cre] ,
Jesse Vent [ctb]
Maintainer: Sebastian Stoeckl <sebastian.stoeckl@uni.li>
Diff between crypto2 versions 2.0.2 dated 2024-09-02 and 2.0.3 dated 2024-10-11
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/crypto_info.R | 2 +- tests/testthat/test-crypto-info.R | 1 + tests/testthat/test-global-quotes.R | 1 + tests/testthat/test-history.R | 2 +- 7 files changed, 19 insertions(+), 13 deletions(-)
Title: Simple Features for R
Description: Support for simple features, a standardized way to
encode spatial vector data. Binds to 'GDAL' for reading and writing
data, to 'GEOS' for geometrical operations, and to 'PROJ' for
projection conversions and datum transformations. Uses by default the 's2'
package for spherical geometry operations on ellipsoidal (long/lat) coordinates.
Author: Edzer Pebesma [aut, cre] ,
Roger Bivand [ctb] ,
Etienne Racine [ctb],
Michael Sumner [ctb],
Ian Cook [ctb],
Tim Keitt [ctb],
Robin Lovelace [ctb],
Hadley Wickham [ctb],
Jeroen Ooms [ctb] ,
Kirill Mueller [ctb],
Thomas Lin Pedersen [ctb],
Dan Baston [c [...truncated...]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between sf versions 1.0-17 dated 2024-09-06 and 1.0-18 dated 2024-10-11
DESCRIPTION | 6 - MD5 | 79 ++++++++++++------------ NAMESPACE | 6 + NEWS.md | 10 +++ R/RcppExports.R | 4 + R/bbox.R | 12 +++ R/crs.R | 2 R/geom-predicates.R | 23 ++++--- R/geom-transformers.R | 9 ++ R/init.R | 1 R/read.R | 4 - R/s2.R | 9 +- R/sfc.R | 68 +++++++++++++++++++-- R/transform.R | 5 + R/valid.R | 5 + R/wkt.R | 11 +++ inst/doc/sf1.html | 72 +++++++++++----------- inst/doc/sf2.html | 6 - inst/doc/sf4.html | 2 inst/doc/sf7.R | 55 ++++++++--------- inst/doc/sf7.Rmd | 68 ++++++++++----------- inst/doc/sf7.html | 141 ++++++++++++++++++++++++-------------------- inst/docker/gdal/Dockerfile | 22 +++--- man/geos_binary_pred.Rd | 4 - man/s2.Rd | 7 +- man/sfc.Rd | 6 + man/st_bbox.Rd | 7 ++ man/st_is_full.Rd |only man/st_read.Rd | 2 src/RcppExports.cpp | 12 +++ src/gdal.cpp | 22 ++++-- src/gdal_read.cpp | 2 src/gdal_utils.cpp | 2 src/sfc-sfg.cpp | 20 ++++++ tests/crs.R | 5 - tests/crs.Rout.save | 7 -- tests/full.R |only tests/full.Rout.save |only tests/gdal_geom.R | 2 tests/gdal_geom.Rout.save | 8 +- tests/spatstat.Rout.save | 11 +-- vignettes/sf7.Rmd | 68 ++++++++++----------- 42 files changed, 491 insertions(+), 314 deletions(-)
Title: Paginate the HTML Output of R Markdown with CSS for Print
Description: Use the paged media properties in CSS and the JavaScript
library 'paged.js' to split the content of an HTML document into discrete
pages. Each page can have its page size, page numbers, margin boxes, and
running headers, etc. Applications of this package include books, letters,
reports, papers, business cards, resumes, and posters.
Author: Yihui Xie [aut, cre] ,
Romain Lesur [aut, cph] ,
Christophe Dervieux [ctb] ,
Brent Thorne [aut] ,
Xianying Tan [aut] ,
Atsushi Yasumoto [ctb] ,
Posit Software, PBC [cph, fnd],
Adam Hyde [ctb] ,
Min-Zhong Lu [ctb] ,
Zulko [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between pagedown versions 0.20 dated 2022-12-13 and 0.21 dated 2024-10-11
DESCRIPTION | 18 +++---- LICENSE | 4 - MD5 | 27 ++++++----- NEWS.md | 4 + R/chrome.R | 2 R/paged.R | 9 ++- R/pagedown-package.R |only README.md | 11 ++-- inst/rmarkdown/templates/business-card/skeleton/skeleton.Rmd | 10 ++-- inst/rmarkdown/templates/html-letter/skeleton/skeleton.Rmd | 2 inst/rmarkdown/templates/jss-paged/skeleton/skeleton.Rmd | 2 man/chrome_print.Rd | 2 man/figures |only man/pagedown-package.Rd |only tests/test-ci.R | 8 --- tests/test-ci/test-chrome.R | 8 +-- 16 files changed, 57 insertions(+), 50 deletions(-)
Title: Statistical Combination of Diagnostic Tests
Description: A system for combining two diagnostic tests using various approaches
that include statistical and machine-learning-based methodologies.
These approaches are divided into four groups: linear combination
methods, non-linear combination methods, mathematical operators,
and machine learning algorithms. See
the <https://biotools.erciyes.edu.tr/dtComb/> website
for more information, documentation, and examples.
Author: Serra Ilayda Yerlitas [aut, ctb],
Serra Bersan Gengec [aut, ctb],
Necla Kochan [aut, ctb],
Gozde Erturk Zararsiz [aut, ctb],
Selcuk Korkmaz [aut, ctb],
Gokmen Zararsiz [aut, ctb, cre]
Maintainer: Gokmen Zararsiz <gokmen.zararsiz@gmail.com>
Diff between dtComb versions 1.0.2 dated 2024-01-30 and 1.0.4 dated 2024-10-11
DESCRIPTION | 6 MD5 | 30 R/linComb.R | 55 R/mathComb.R | 53 R/mlComb.R | 38 R/nonlinComb.R | 2576 +++++++++++++-------------- README.md | 10 inst/doc/vignettedtComb.Rnw | 4 inst/doc/vignettedtComb.pdf |binary man/linComb.Rd | 8 man/mathComb.Rd | 6 man/mlComb.Rd | 6 man/nonlinComb.Rd | 6 tests/testthat/result_data/test_predComb.rda |binary tests/testthat/test-predComb.R | 4 vignettes/vignettedtComb.Rnw | 4 16 files changed, 1426 insertions(+), 1380 deletions(-)
Title: Accessing and Analyzing Large-Scale Environmental Data
Description: Functions are designed to facilitate access to and utility with large scale, publicly available environmental data in R. The package contains functions for downloading raw data files from web URLs (download_data()), processing the raw data files into clean spatial objects (process_covariates()), and extracting values from the spatial data objects at point and polygon locations (calc_covariates()). These functions call a series of source-specific functions which are tailored to each data sources/datasets particular URL structure, data format, and spatial/temporal resolution. The functions are tested, versioned, and open source and open access. For calc_sedc() method details, see Messier, Akita, and Serre (2012) <doi:10.1021/es203152a>.
Author: Mitchell Manware [aut, ctb] ,
Insang Song [aut, ctb] ,
Eva Marques [aut, ctb] ,
Mariana Alifa Kassien [aut, ctb]
,
Kyle Messier [aut, cre] ,
Spatiotemporal Exposures and Toxicology Group [cph]
Maintainer: Kyle Messier <kyle.messier@nih.gov>
Diff between amadeus versions 1.0.7 dated 2024-09-02 and 1.1.3 dated 2024-10-11
DESCRIPTION | 6 MD5 | 117 ++++++------ NAMESPACE | 2 R/calculate_covariates_auxiliary.R | 14 - R/download.R | 336 +++++++++++++++++++++++++++++-------- R/download_auxiliary.R | 29 ++- R/manipulate_spacetime_data.R | 6 R/process.R | 4 R/process_auxiliary.R | 23 +- README.md | 11 - build/partial.rdb |binary man/apply_extent.Rd | 1 man/calc_check_time.Rd | 1 man/calc_message.Rd | 1 man/calc_prepare_locs.Rd | 1 man/calc_return_locs.Rd | 1 man/calc_setcolumns.Rd | 1 man/calc_time.Rd | 1 man/calc_worker.Rd | 1 man/check_mysf.Rd | 1 man/check_mysftime.Rd | 1 man/check_url_status.Rd | 1 man/check_urls.Rd | 1 man/download_aqs.Rd | 17 + man/download_cropscape.Rd | 13 + man/download_data.Rd | 13 + man/download_ecoregion.Rd | 13 + man/download_geos.Rd | 17 + man/download_gmted.Rd | 13 + man/download_gridmet.Rd | 17 + man/download_hash.Rd |only man/download_hms.Rd | 18 + man/download_huc.Rd | 13 + man/download_koppen_geiger.Rd | 13 + man/download_merra2.Rd | 21 +- man/download_modis.Rd | 21 +- man/download_narr.Rd | 17 + man/download_nei.Rd | 13 + man/download_nlcd.Rd | 13 + man/download_prism.Rd | 13 + man/download_sedac_groads.Rd | 13 + man/download_sedac_population.Rd | 13 + man/download_terraclimate.Rd | 17 + man/download_tri.Rd | 17 + man/generate_date_sequence.Rd | 1 man/generate_time_sequence.Rd | 1 man/is_date_proper.Rd | 1 man/narr_variable.Rd | 1 man/process_collection.Rd | 1 man/process_conformity.Rd | 2 man/process_gmted_codes.Rd | 1 man/process_gridmet_codes.Rd | 1 man/process_locs_radius.Rd | 1 man/process_locs_vector.Rd | 1 man/process_merra2_time.Rd | 1 man/process_sedac_codes.Rd | 1 man/process_terraclimate_codes.Rd | 1 man/process_tri.Rd | 4 man/process_variable_codes.Rd | 1 man/rename_time.Rd | 1 60 files changed, 652 insertions(+), 233 deletions(-)
Title: High Performance Tools for Combinatorics and Computational
Mathematics
Description: Provides optimized functions and flexible combinatorial iterators
implemented in C++ for solving problems in combinatorics and
computational mathematics. Utilizes the RMatrix class from 'RcppParallel'
for thread safety. There are combination/permutation functions with
constraint parameters that allow for generation of all results of a vector
meeting specific criteria (e.g. generating integer partitions/compositions
or finding all combinations such that the sum is between two bounds).
Capable of generating specific combinations/permutations (e.g. retrieve
only the nth lexicographical result) which sets up nicely for
parallelization as well as random sampling. Gmp support permits exploration
where the total number of results is large (e.g. comboSample(10000, 500,
n = 4)). Additionally, there are several high performance number theoretic
functions that are useful for problems common in computational mathematics.
Some of these functions make use of the fast integer division library
'libdiv [...truncated...]
Author: Joseph Wood [aut, cre]
Maintainer: Joseph Wood <jwood000@gmail.com>
Diff between RcppAlgos versions 2.8.3 dated 2023-12-09 and 2.8.5 dated 2024-10-11
DESCRIPTION | 18 ++++++++++---- MD5 | 40 ++++++++++++++++---------------- NEWS.md | 18 ++++++++++++++ README.md | 6 ++-- build/vignette.rds |binary inst/NEWS.Rd | 27 ++++++++++++++++++++- inst/doc/CombPermConstraints.html | 6 ++-- inst/doc/CombinatorialSampling.html | 4 +-- inst/doc/CombinatoricsIterators.html | 4 +-- inst/doc/ComputationalMathematics.html | 2 - inst/doc/GeneralCombinatorics.html | 4 +-- inst/doc/HighPerformanceBenchmarks.html | 2 - inst/doc/OtherCombinatorics.html | 2 - inst/doc/SubsetSum.html | 6 ++-- inst/include/ClassUtils/ComboClass.h | 2 - inst/include/NumbersUtils/libdivide.h | 2 - src/ComboClass.cpp | 12 ++++----- src/GmpConvert.cpp | 27 ++++++++++++++++++++- src/SetUpUtils.cpp | 16 +++--------- src/StdConvert.cpp | 12 +++++++-- tests/testthat/testErrors.R | 20 ++++++---------- 21 files changed, 150 insertions(+), 80 deletions(-)
Title: Model Menu for Radiant: Business Analytics using R and Shiny
Description: The Radiant Model menu includes interfaces for linear and logistic
regression, naive Bayes, neural networks, classification and regression trees,
model evaluation, collaborative filtering, decision analysis, and simulation.
The application extends the functionality in 'radiant.data'.
Author: Vincent Nijs [aut, cre]
Maintainer: Vincent Nijs <radiant@rady.ucsd.edu>
Diff between radiant.model versions 1.6.6 dated 2024-05-15 and 1.6.7 dated 2024-10-11
DESCRIPTION | 10 ++--- MD5 | 22 +++++------ NEWS.md | 7 +++ R/crtree.R | 2 - R/dtree.R | 70 +++++++++++++++++++++++-------------- R/logistic.R | 24 ++++++++++++ R/nn.R | 2 - R/regress.R | 24 ++++++++++++ README.md | 2 - inst/app/tools/analysis/dtree_ui.R | 10 +++-- man/plot.crtree.Rd | 2 - man/scale_df.Rd | 3 - 12 files changed, 125 insertions(+), 53 deletions(-)
Title: Versatile Curation of Table Metadata
Description: A YAML-based
mechanism for working with table metadata. Supports
compact syntax for creating, modifying, viewing, exporting,
importing, displaying, and plotting metadata coded as column
attributes. The 'yamlet' dialect is valid 'YAML' with
defaults and conventions chosen to improve readability.
See ?yamlet, ?decorate, ?modify, ?io_csv, and ?ggplot.decorated.
Author: Tim Bergsma [aut, cre]
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Diff between yamlet versions 1.1.2 dated 2024-09-11 and 1.1.3 dated 2024-10-11
DESCRIPTION | 6 MD5 | 34 ++-- R/explicit_guide.R | 77 +++++++++- R/parsimonious.R | 13 + R/yamlet.R | 4 R/yamlet_options.R | 8 + inst/doc/scripted-html.html | 4 inst/doc/scripted-pdf.pdf |binary inst/doc/yamlet-introduction.html | 4 man/explicit_guide.data.frame.Rd | 5 man/explicit_guide.dvec.Rd | 7 man/explicit_guide.yamlet.Rd | 3 man/implicit_guide.data.frame.Rd | 4 man/parsimonious.list.Rd | 4 man/yamlet_options.Rd | 8 + tests/testthat/test-classified.R | 15 + vignettes/scripted-pdf_files/figure-latex/unnamed-chunk-4-1.pdf |binary vignettes/scripted-pdf_files/figure-latex/unnamed-chunk-5-1.pdf |binary 18 files changed, 160 insertions(+), 36 deletions(-)