Title: Feature Extraction and Document Classification with Noisy Labels
Description: Extract features and classify documents with noisy labels given by document-meta data or keyword matching Watanabe & Zhou (2020) <doi:10.1177/0894439320907027>.
Author: Kohei Watanabe [aut, cre, cph]
Maintainer: Kohei Watanabe <watanabe.kohei@gmail.com>
Diff between wordmap versions 0.9.0 dated 2024-09-05 and 0.9.1 dated 2024-10-20
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/textmodel.R | 5 +++++ tests/testthat/test-textmodel.R | 29 ++++++++++++++++++++++++----- 5 files changed, 40 insertions(+), 12 deletions(-)
Title: Fast Alternatives to 'tidyverse' Functions
Description: A full set of fast data manipulation tools with a tidy
front-end and a fast back-end using 'collapse' and 'cheapr'.
Author: Nick Christofides [aut, cre]
Maintainer: Nick Christofides <nick.christofides.r@gmail.com>
Diff between fastplyr versions 0.2.0 dated 2024-10-04 and 0.3.0 dated 2024-10-20
fastplyr-0.2.0/fastplyr/R/f_consecutive_id.R |only fastplyr-0.2.0/fastplyr/man/f_consecutive_id.Rd |only fastplyr-0.3.0/fastplyr/DESCRIPTION | 11 fastplyr-0.3.0/fastplyr/MD5 | 95 fastplyr-0.3.0/fastplyr/NAMESPACE | 6 fastplyr-0.3.0/fastplyr/NEWS.md | 14 fastplyr-0.3.0/fastplyr/R/GRP_utils.R | 2 fastplyr-0.3.0/fastplyr/R/abc.R | 39 fastplyr-0.3.0/fastplyr/R/add_id.R |only fastplyr-0.3.0/fastplyr/R/cpp11.R | 12 fastplyr-0.3.0/fastplyr/R/desc.R | 46 fastplyr-0.3.0/fastplyr/R/df_utils.R | 635 ++--- fastplyr-0.3.0/fastplyr/R/f_bind.R | 308 +- fastplyr-0.3.0/fastplyr/R/f_count.R | 492 ++-- fastplyr-0.3.0/fastplyr/R/f_distinct.R | 31 fastplyr-0.3.0/fastplyr/R/f_duplicates.R | 25 fastplyr-0.3.0/fastplyr/R/f_expand.R | 49 fastplyr-0.3.0/fastplyr/R/f_group_by.R | 32 fastplyr-0.3.0/fastplyr/R/f_nest_by.R |only fastplyr-0.3.0/fastplyr/R/f_rowwise.R | 78 fastplyr-0.3.0/fastplyr/R/f_slice.R | 838 +++---- fastplyr-0.3.0/fastplyr/R/f_summarise.R | 10 fastplyr-0.3.0/fastplyr/R/f_tibble.R | 8 fastplyr-0.3.0/fastplyr/R/fastplyr-package.R | 9 fastplyr-0.3.0/fastplyr/R/group_collapse.R | 6 fastplyr-0.3.0/fastplyr/R/group_id.R | 738 ++---- fastplyr-0.3.0/fastplyr/R/reconstruct.R | 191 - fastplyr-0.3.0/fastplyr/R/tidy_quantiles.R | 477 ++-- fastplyr-0.3.0/fastplyr/R/tidy_utils.R | 607 ++--- fastplyr-0.3.0/fastplyr/README.md | 124 - fastplyr-0.3.0/fastplyr/man/add_id.Rd |only fastplyr-0.3.0/fastplyr/man/duplicate_rows.Rd | 133 - fastplyr-0.3.0/fastplyr/man/f_count.Rd | 158 - fastplyr-0.3.0/fastplyr/man/f_distinct.Rd | 96 fastplyr-0.3.0/fastplyr/man/f_expand.Rd | 100 fastplyr-0.3.0/fastplyr/man/f_group_by.Rd | 20 fastplyr-0.3.0/fastplyr/man/f_nest_by.Rd |only fastplyr-0.3.0/fastplyr/man/f_rowwise.Rd |only fastplyr-0.3.0/fastplyr/man/f_slice.Rd | 34 fastplyr-0.3.0/fastplyr/man/f_summarise.Rd | 20 fastplyr-0.3.0/fastplyr/man/figures |only fastplyr-0.3.0/fastplyr/man/group_id.Rd | 102 fastplyr-0.3.0/fastplyr/man/tidy_quantiles.Rd | 9 fastplyr-0.3.0/fastplyr/src/cpp11.cpp | 24 fastplyr-0.3.0/fastplyr/src/fastplyr.cpp | 160 + fastplyr-0.3.0/fastplyr/tests/testthat.R | 24 fastplyr-0.3.0/fastplyr/tests/testthat/test-f_consecutive_Id.R |only fastplyr-0.3.0/fastplyr/tests/testthat/test-f_count.R | 618 ++--- fastplyr-0.3.0/fastplyr/tests/testthat/test-f_distinct.R | 190 - fastplyr-0.3.0/fastplyr/tests/testthat/test-f_expand.R | 214 - fastplyr-0.3.0/fastplyr/tests/testthat/test-f_slice.R | 1116 +++++----- fastplyr-0.3.0/fastplyr/tests/testthat/test-tidy_quantiles.R |only 52 files changed, 4136 insertions(+), 3765 deletions(-)
Title: Behavioural Studies of Large Language Models
Description: Efficient way to design and conduct psychological experiments for testing the performance of large language models. It simplifies the process of setting up experiments and data collection via language models’ API, facilitating a smooth workflow for researchers in the field of machine behaviour.
Author: Xufeng Duan [aut, cre],
Shixuan Li [aut],
Zhenguang Cai [aut]
Maintainer: Xufeng Duan <dxfdxfdxf88@gmail.com>
Diff between MacBehaviour versions 1.2.7 dated 2024-09-06 and 1.2.8 dated 2024-10-20
DESCRIPTION | 6 MD5 | 12 - R/experimentDesign.R | 12 - R/gpt.R | 189 ++++++++++------- R/runExperiment.R | 544 ++++----------------------------------------------- R/tools.R | 75 +++---- README.md | 243 ++++++++++++++++++---- 7 files changed, 409 insertions(+), 672 deletions(-)
Title: Provides Access to Git Repositories
Description: Interface to the 'libgit2' library, which is a pure C
implementation of the 'Git' core methods. Provides access to 'Git'
repositories to extract data and running some basic 'Git'
commands.
Author: Stefan Widgren [aut, cre] ,
Gabor Csardi [ctb],
Gregory Jefferis [ctb],
Jennifer Bryan [ctb],
Jeroen Ooms [ctb],
Jim Hester [ctb],
John Blischak [ctb],
Karthik Ram [ctb],
Peter Carbonetto [ctb],
Scott Chamberlain [ctb],
Thomas Rosendal [ctb]
Maintainer: Stefan Widgren <stefan.widgren@gmail.com>
Diff between git2r versions 0.33.0 dated 2023-11-26 and 0.35.0 dated 2024-10-20
git2r-0.33.0/git2r/inst/AUTHORS |only git2r-0.33.0/git2r/inst/COPYING |only git2r-0.33.0/git2r/src/Makevars.ucrt |only git2r-0.33.0/git2r/src/Makevars_libgit2.in |only git2r-0.33.0/git2r/src/git2r_deprecated.h |only git2r-0.33.0/git2r/src/libgit2 |only git2r-0.33.0/git2r/tools/iconv.m4 |only git2r-0.33.0/git2r/tools/lib-ld.m4 |only git2r-0.33.0/git2r/tools/lib-link.m4 |only git2r-0.33.0/git2r/tools/lib-prefix.m4 |only git2r-0.33.0/git2r/tools/winlibs.R |only git2r-0.35.0/git2r/DESCRIPTION | 49 git2r-0.35.0/git2r/MD5 | 590 -- git2r-0.35.0/git2r/NAMESPACE | 90 git2r-0.35.0/git2r/NEWS.md | 21 git2r-0.35.0/git2r/R/blame.R | 3 git2r-0.35.0/git2r/R/blob.R | 9 git2r-0.35.0/git2r/R/branch.R | 12 git2r-0.35.0/git2r/R/checkout.R | 13 git2r-0.35.0/git2r/R/commit.R | 10 git2r-0.35.0/git2r/R/config.R | 5 git2r-0.35.0/git2r/R/contributions.R | 3 git2r-0.35.0/git2r/R/diff.R | 4 git2r-0.35.0/git2r/R/fetch.R | 4 git2r-0.35.0/git2r/R/git2r.R | 6 git2r-0.35.0/git2r/R/index.R | 5 git2r-0.35.0/git2r/R/libgit2.R | 5 git2r-0.35.0/git2r/R/merge.R | 4 git2r-0.35.0/git2r/R/note.R | 6 git2r-0.35.0/git2r/R/odb.R | 4 git2r-0.35.0/git2r/R/pull.R | 3 git2r-0.35.0/git2r/R/push.R | 5 git2r-0.35.0/git2r/R/reference.R | 3 git2r-0.35.0/git2r/R/reflog.R | 3 git2r-0.35.0/git2r/R/refspec.R | 3 git2r-0.35.0/git2r/R/remote.R | 9 git2r-0.35.0/git2r/R/repository.R | 14 git2r-0.35.0/git2r/R/reset.R | 5 git2r-0.35.0/git2r/R/revparse.R | 3 git2r-0.35.0/git2r/R/signature.R | 3 git2r-0.35.0/git2r/R/stash.R | 7 git2r-0.35.0/git2r/R/status.R | 3 git2r-0.35.0/git2r/R/tag.R | 5 git2r-0.35.0/git2r/R/tree.R | 4 git2r-0.35.0/git2r/cleanup | 13 git2r-0.35.0/git2r/configure | 5885 +---------------------------- git2r-0.35.0/git2r/configure.ac | 485 -- git2r-0.35.0/git2r/inst/COPYRIGHTS | 277 - git2r-0.35.0/git2r/man/git2r.Rd | 27 git2r-0.35.0/git2r/src/Makevars.in | 2 git2r-0.35.0/git2r/src/Makevars.win | 22 git2r-0.35.0/git2r/src/git2r.c | 2 git2r-0.35.0/git2r/src/git2r_arg.c | 5 git2r-0.35.0/git2r/src/git2r_blame.c | 5 git2r-0.35.0/git2r/src/git2r_blob.c | 17 git2r-0.35.0/git2r/src/git2r_branch.c | 43 git2r-0.35.0/git2r/src/git2r_checkout.c | 17 git2r-0.35.0/git2r/src/git2r_clone.c | 7 git2r-0.35.0/git2r/src/git2r_commit.c | 19 git2r-0.35.0/git2r/src/git2r_config.c | 21 git2r-0.35.0/git2r/src/git2r_cred.c | 35 git2r-0.35.0/git2r/src/git2r_cred.h | 5 git2r-0.35.0/git2r/src/git2r_diff.c | 25 git2r-0.35.0/git2r/src/git2r_error.h | 2 git2r-0.35.0/git2r/src/git2r_graph.c | 7 git2r-0.35.0/git2r/src/git2r_index.c | 7 git2r-0.35.0/git2r/src/git2r_libgit2.c | 5 git2r-0.35.0/git2r/src/git2r_merge.c | 41 git2r-0.35.0/git2r/src/git2r_note.c | 15 git2r-0.35.0/git2r/src/git2r_object.c | 17 git2r-0.35.0/git2r/src/git2r_odb.c | 43 git2r-0.35.0/git2r/src/git2r_push.c | 5 git2r-0.35.0/git2r/src/git2r_reference.c | 15 git2r-0.35.0/git2r/src/git2r_reflog.c | 5 git2r-0.35.0/git2r/src/git2r_remote.c | 25 git2r-0.35.0/git2r/src/git2r_repository.c | 25 git2r-0.35.0/git2r/src/git2r_reset.c | 9 git2r-0.35.0/git2r/src/git2r_revparse.c | 15 git2r-0.35.0/git2r/src/git2r_revwalk.c | 9 git2r-0.35.0/git2r/src/git2r_signature.c | 5 git2r-0.35.0/git2r/src/git2r_stash.c | 13 git2r-0.35.0/git2r/src/git2r_status.c | 5 git2r-0.35.0/git2r/src/git2r_tag.c | 19 git2r-0.35.0/git2r/src/git2r_transfer.c | 7 git2r-0.35.0/git2r/src/git2r_transfer.h | 5 git2r-0.35.0/git2r/src/git2r_tree.c | 11 git2r-0.35.0/git2r/tools/version.c | 8 87 files changed, 916 insertions(+), 7227 deletions(-)
Title: Get Images Out of DICOM Format Quickly
Description: Provides tools to sort DICOM-format medical image files, and
convert them to NIfTI-1 format.
Author: Jon Clayden [aut, cre] ,
Chris Rorden [aut],
Martin J Fiedler [cph],
Cong Xu [cph],
Pascal Gloor [cph]
Maintainer: Jon Clayden <code@clayden.org>
Diff between divest versions 1.1.0 dated 2024-10-14 and 1.1.1 dated 2024-10-20
DESCRIPTION | 10 +++---- MD5 | 18 ++++++------- NEWS | 15 +++++++++++ R/read.R | 20 +++++++++------ configure | 2 - configure.ac | 2 - man/readDicom.Rd | 12 ++++----- src/Makevars.in | 2 - src/dcm2niix/nii_dicom.cpp | 52 ++++++--------------------------------- src/dcm2niix/nii_dicom_batch.cpp | 26 +++++++++++++++---- 10 files changed, 81 insertions(+), 78 deletions(-)
Title: Bayesian Analysis of Networks of Binary and/or Ordinal Variables
Description: Bayesian variable selection methods for analyzing the structure of a Markov Random Field model for a network of binary and/or ordinal variables. Details of the implemented methods can be found in: Marsman, van den Bergh, and Haslbeck (in press) <doi:10.31234/osf.io/ukwrf>.
Author: Maarten Marsman [aut, cre] ,
Karoline Huth [ctb] ,
Nikola Sekulovski [ctb] ,
Don van den Bergh [ctb]
Maintainer: Maarten Marsman <m.marsman@uva.nl>
Diff between bgms versions 0.1.3.1 dated 2024-05-15 and 0.1.4 dated 2024-10-20
DESCRIPTION | 12 MD5 | 63 +-- NAMESPACE | 19 NEWS.md | 8 R/RcppExports.R | 8 R/bgm.R | 81 ++-- R/bgmCompare.R |only R/extractor_functions.R | 203 +++++++++- R/print.bgms.R | 56 ++ R/sampleMRF.R | 2 R/utility_functions.R | 704 +++++++++++++++++++++++++++++++++++-- README.md | 9 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 16 inst/REFERENCES.bib | 51 +- inst/doc/bgmcompare.R |only inst/doc/bgmcompare.Rmd |only inst/doc/bgmcompare.html |only inst/doc/introduction.R | 24 - inst/doc/introduction.Rmd | 54 +- inst/doc/introduction.html | 121 +++--- man/bgm.Rd | 40 +- man/bgmCompare.Rd |only man/extractor_functions.Rd | 47 ++ man/mrfSampler.Rd | 2 man/print.bgmCompare.Rd |only src/RcppExports.cpp | 54 ++ src/data_simulation.cpp | 14 src/gibbs_functions.cpp | 159 ++++++-- src/gibbs_functions.h |only src/gibbs_functions_compare.cpp |only src/gibbs_functions_edge_prior.cpp |only src/gibbs_functions_edge_prior.h |only tests/testthat/test-bgm.R | 7 vignettes/bgmcompare.Rmd |only vignettes/introduction.Rmd | 54 +- vignettes/refs.bib | 38 + 38 files changed, 1492 insertions(+), 354 deletions(-)
Title: Imports Log Files from Angstrom Engineering Thermal Evaporator
Description: Opens and imports log files from Angstrom Engineering Thermal Evaporator
and extracts basic characteristics, such as base pressure, time of the evaporation.
It can visualize the deposition observables for review.
Author: Thomas Gredig [aut, cre, cph]
Maintainer: Thomas Gredig <tgredig@csulb.edu>
Diff between angstromATE versions 0.1.2 dated 2024-07-05 and 0.1.3 dated 2024-10-20
DESCRIPTION | 14 +++++++------- MD5 | 12 ++++++------ NAMESPACE | 1 + NEWS.md | 4 ++++ R/ATE.complete.R | 13 ++++++++++++- README.md | 11 +++-------- tests/testthat/test-ATEcomplete.R | 2 +- 7 files changed, 34 insertions(+), 23 deletions(-)
Title: S-Core Graph Decomposition
Description: S-Core Graph Decomposition algorithm for graphs. This is a method
for decomposition of a weighted graph, as proposed by Eidsaa and
Almaas (2013) <doi:10.1103/PhysRevE.88.062819>. The high speed and
the low memory usage make it suitable for large graphs.
Author: Christos Adam [aut, cre]
Maintainer: Christos Adam <econp266@econ.soc.uoc.gr>
Diff between scoredec versions 0.1.0 dated 2024-09-19 and 0.1.1 dated 2024-10-20
DESCRIPTION | 6 +++--- MD5 | 13 +++++++------ NEWS.md | 8 ++++++++ README.md |only inst/doc/Introduction.Rmd | 16 +++++++++------- inst/doc/Introduction.html | 27 +++++++++++++++------------ man/s_coreness.Rd | 10 +++++----- vignettes/Introduction.Rmd | 16 +++++++++------- 8 files changed, 56 insertions(+), 40 deletions(-)
Title: Power Analysis and Data Simulation for Multilevel Models
Description: A declarative language for specifying multilevel models,
solving for population parameters based on specified variance-explained effect
size measures, generating data, and conducting power analyses to determine
sample size recommendations. The specification allows for any number of
within-cluster effects, between-cluster effects, covariate effects
at either level, and random coefficients. Moreover, the models do not
assume orthogonal effects, and predictors can correlate at either level
and accommodate models with multiple interaction effects.
Author: Brian T. Keller [aut, cre, cph]
Maintainer: Brian T. Keller <btkeller@missouri.edu>
Diff between mlmpower versions 1.0.8 dated 2024-04-02 and 1.0.9 dated 2024-10-20
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS.md | 4 ++++ R/mechanisms.R | 10 +++++----- R/parameters.R | 14 ++++++++------ R/simulation.R | 3 ++- inst/doc/mlmpower.Rmd | 4 ++-- inst/doc/mlmpower.html | 36 ++++++++++++++++++------------------ man/generate.Rd | 3 ++- vignettes/mlmpower.Rmd | 4 ++-- 10 files changed, 56 insertions(+), 48 deletions(-)
Title: Quality Control and Analysis of Massachusetts Water Quality Data
Description: Methods for quality control and exploratory analysis of surface
water quality data collected in Massachusetts, USA. Functions are developed
to facilitate data formatting for the Water Quality Exchange Network
<https://www.epa.gov/waterdata/water-quality-data-upload-wqx> and reporting
of data quality objectives to state agencies. Quality control methods are
from Massachusetts Department of Environmental Protection (2020)
<https://www.mass.gov/orgs/massachusetts-department-of-environmental-protection>.
Author: Marcus Beck [aut, cre] ,
Jill Carr [aut],
Ben Wetherill [aut]
Maintainer: Marcus Beck <mbeck@tbep.org>
Diff between MassWateR versions 2.1.4 dated 2023-11-19 and 2.1.5 dated 2024-10-20
DESCRIPTION | 10 +-- MD5 | 44 ++++++++--------- NAMESPACE | 1 NEWS.md | 8 ++- R/anlzMWRmap.R | 30 ++++++----- R/checkMWRresults.R | 12 ++++ R/tabMWRacc.R | 2 R/tabMWRcom.R | 2 R/tabMWRfre.R | 2 README.md | 7 +- data/paramsMWR.RData |binary data/paramsMWR.rda |only data/thresholdMWR.rda |only inst/extdata/MassWateR_Results_Template.xlsx |binary inst/extdata/ParameterMapping.xlsx |binary inst/extdata/ThresholdMapping.xlsx |binary inst/extdata/WQX_Phys-Chem_Template_for_MassWateR.xlsx |binary man/anlzMWRmap.Rd | 4 - man/checkMWRresults.Rd | 1 man/tabMWRacc.Rd | 2 man/tabMWRcom.Rd | 2 man/tabMWRfre.Rd | 2 tests/testthat/test-anlzMWRmap.R | 2 tests/testthat/test-checkMWRresults.R | 8 +++ 24 files changed, 84 insertions(+), 55 deletions(-)
Title: Robust Analytical Methods for Evaluating Educational
Interventions using Randomised Controlled Trials Designs
Description: Analysing data from evaluations of educational interventions using a randomised controlled trial design. Various analytical tools to perform sensitivity analysis using different methods are supported (e.g. frequentist models with bootstrapping and permutations options, Bayesian models). The included commands can be used for simple randomised trials, cluster randomised trials and multisite trials. The methods can also be used more widely beyond education trials. This package can be used to evaluate other intervention designs using Frequentist and Bayesian multilevel models.
Author: Germaine Uwimpuhwe [aut, cre],
Qing Zhang [aut],
Akansha Singh [aut],
Dimitris Vallis [aut],
Jochen Einbeck [aut],
Steve Higgins [aut],
ZhiMin Xiao [aut],
Ewoud De Troyer [aut],
Adetayo Kasim [aut]
Maintainer: Germaine Uwimpuhwe <germaine.uwimpuhwe@durham.ac.uk>
Diff between eefAnalytics versions 1.1.2 dated 2024-10-08 and 1.1.3 dated 2024-10-20
DESCRIPTION | 6 MD5 | 25 R/crtBayes.R | 826 +++++++-------- R/hello.R |only R/mstBayes.R | 977 +++++++++--------- R/srtBayes.R | 583 +++++----- build/vignette.rds |binary inst/doc/eefAnalytics.R | 2 inst/doc/eefAnalytics.Rmd | 2376 ++++++++++++++++++++++---------------------- inst/doc/eefAnalytics.html | 22 inst/examples/mstBExample.R | 142 +- inst/jags/MST.txt | 96 - man/mstBayes.Rd | 6 vignettes/eefAnalytics.Rmd | 2376 ++++++++++++++++++++++---------------------- 14 files changed, 3727 insertions(+), 3710 deletions(-)
Title: Classes and Methods for 'IP' Addresses
Description: Provides S4 classes for Internet Protocol (IP) versions 4 and 6 addresses and efficient methods for 'IP' addresses comparison, arithmetic, bit manipulation and lookup. Both 'IPv4' and 'IPv6' arbitrary ranges are also supported as well as internationalized (IDN) domain lookup with and 'whois' query.
Author: Thomas Soubiran [aut, cre]
Maintainer: Thomas Soubiran <thomas.soubiran@univ-lille.fr>
Diff between IP versions 0.1.3 dated 2024-03-03 and 0.1.4 dated 2024-10-20
DESCRIPTION | 6 MD5 | 43 ++--- R/Rip-ip.R | 2 R/Rip-ipv4.R | 52 ++++++ R/Rip-ipv6.R | 53 +++++- build/vignette.rds |binary inst/doc/ip-host.html | 136 ++++++++++------- inst/doc/ip-intro.html | 6 man/Compare-methods.Rd | 26 +-- man/IP-package.Rd | 15 - man/hostinfo.Rd | 3 man/ip-capabilities.Rd |only man/ip-class.Rd | 4 man/varia.Rd | 4 src/Rip-IP-macros.h | 95 ++++++++++- src/Rip-itermacros.h | 45 +++-- src/Rip-op-arith.c | 1 src/Rip-op-bool.c | 254 ++++++++++++++++++++++++++++++-- src/Rip.c | 166 ++++++++++++++++++-- src/Rip.h | 47 +++++ src/templates/Rip-common-tables.c | 100 ++++++++++++ src/templates/Rip-input-body-template.c |only src/templates/Rip-input-iter-template.c |only src/templates/Rip-iter-template.c | 28 ++- 24 files changed, 896 insertions(+), 190 deletions(-)
Title: Bitcoin API
Description: Implementation of the RPC-JSON API for Bitcoin and utility functions for address creation and content analysis of the blockchain.
Author: Bernhard Pfaff [aut, cre]
Maintainer: Bernhard Pfaff <bernhard@pfaffikus.de>
Diff between rbtc versions 0.1-6 dated 2019-03-11 and 0.1-7 dated 2024-10-20
DESCRIPTION | 13 +++++-------- MD5 | 8 ++++---- man/ecoperators-methods.Rd | 2 +- man/getblock.Rd | 4 ++-- man/getrawtransaction.Rd | 3 +-- 5 files changed, 13 insertions(+), 17 deletions(-)
Title: Numerical Methods and Optimization in Finance
Description: Functions, examples and data from the first and
the second edition of "Numerical Methods and Optimization in
Finance" by M. Gilli, D. Maringer and E. Schumann (2019,
ISBN:978-0128150658). The package provides implementations
of optimisation heuristics (Differential Evolution, Genetic
Algorithms, Particle Swarm Optimisation, Simulated Annealing
and Threshold Accepting), and other optimisation tools, such
as grid search and greedy search. There are also functions
for the valuation of financial instruments such as bonds and
options, for portfolio selection and functions that help
with stochastic simulations.
Author: Enrico Schumann [aut, cre]
Maintainer: Enrico Schumann <es@enricoschumann.net>
Diff between NMOF versions 2.8-0 dated 2023-10-20 and 2.10-0 dated 2024-10-20
DESCRIPTION | 12 - MD5 | 160 +++++++++++++------------ NAMESPACE | 1 NEWS | 26 ++++ R/MRC.R |only R/approxTR.R |only R/bracket.R | 5 R/market_data.R | 86 ++++++++----- README.md | 11 - build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 4 inst/doc/An_overview.pdf |binary inst/doc/DEnss.pdf |binary inst/doc/LSqueens.R | 22 +-- inst/doc/LSqueens.Rnw | 29 ++-- inst/doc/LSqueens.pdf |binary inst/doc/LSselect.pdf |binary inst/doc/NMOF.bib | 7 + inst/doc/PSlms.pdf |binary inst/doc/TAportfolio.pdf |binary inst/doc/portfolio.pdf |binary inst/doc/qTableEx.pdf |binary inst/doc/repair.pdf |binary inst/doc/vectorise.pdf |binary inst/tinytest/test_bracketing.R |only inst/tinytest/test_gridSearch.R | 123 ++++++++++++++++++- inst/tinytest/test_heston.R |only inst/tinytest/test_trackingPortfolio.R | 4 inst/tinytest/test_xwGauss.R |only inst/unitTests/test_results.txt | 65 +++++----- inst/unitTests/unitTests2.R | 209 --------------------------------- man/CPPI.Rd | 2 man/DEopt.Rd | 6 man/EuropeanCall.Rd | 4 man/French.Rd | 106 +++++++++------- man/GAopt.Rd | 2 man/LS.info.Rd | 2 man/LSopt.Rd | 2 man/MA.Rd | 2 man/NMOF-internal.Rd | 2 man/NMOF-package.Rd | 10 - man/NS.Rd | 12 - man/NSf.Rd | 6 man/PSopt.Rd | 2 man/Ritter.Rd | 4 man/SA.info.Rd | 2 man/SAopt.Rd | 2 man/Shiller.Rd | 4 man/TA.info.Rd | 2 man/TAopt.Rd | 4 man/approxBondReturn.Rd |only man/bracketing.Rd | 64 +++++----- man/bundData.Rd | 2 man/bundFuture.Rd | 2 man/callCF.Rd | 2 man/callHestoncf.Rd | 2 man/callMerton.Rd | 2 man/colSubset.Rd | 2 man/drawdown.Rd | 2 man/fundData.Rd | 2 man/greedySearch.Rd | 2 man/gridSearch.Rd | 2 man/maxSharpe.Rd | 4 man/mc.Rd | 2 man/minCVaR.Rd | 4 man/minvar.Rd | 6 man/mvFrontier.Rd | 2 man/optionData.Rd | 2 man/options.Rd | 2 man/pm.Rd | 2 man/putCallParity.Rd | 2 man/qTable.Rd | 2 man/randomReturns.Rd | 2 man/repairMatrix.Rd | 2 man/resampleC.Rd | 2 man/restartOpt.Rd | 2 man/showExample.Rd | 2 man/testFunctions.Rd | 2 man/trackingPortfolio.Rd | 4 man/xtContractValue.Rd | 2 man/xwGauss.Rd | 2 vignettes/LSqueens.Rnw | 29 ++-- vignettes/NMOF.bib | 7 + 84 files changed, 563 insertions(+), 545 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-06-17 1.4.3
2022-06-02 1.4.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-08-27 1.1
2022-03-16 1.0
2020-08-29 0.8.5
2016-11-26 0.8.1
2016-01-20 0.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-02-14 3.0
2022-08-26 2.5
2021-07-04 2.2
2020-08-12 2.1
2020-04-19 2.0
2019-01-12 1.2
2016-11-21 1.1
2016-09-06 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-02-28 3.2
2021-07-05 3.1
2020-08-24 3.0
2019-01-13 2.3
2016-11-28 2.1
2016-11-22 2.0
2016-03-04 1.5
2015-12-27 1.1
2015-10-11 1.0
Title: Mediterranean Landscape Simulation
Description: Simulate forest hydrology, forest function and dynamics over landscapes [De Caceres et al. (2015) <doi:10.1016/j.agrformet.2015.06.012>]. Parallelization is allowed in several simulation functions and simulations may be conducted including spatial processes such as lateral water transfer and seed dispersal.
Author: Miquel De Caceres [aut, cre],
Aitor Ameztegui [aut] ,
Maria Gonzalez [aut] ,
Nuria Aquilue [aut],
Daniel Caviedes-Voullieme [aut],
Mario Morales-Hernandez [aut],
Mario Beltran [ctb],
Rodrigo Balaguer-Romano [ctb] ,
Roberto Molowny-Horas [ctb]
Maintainer: Miquel De Caceres <miquelcaceres@gmail.com>
Diff between medfateland versions 2.4.6 dated 2024-10-03 and 2.4.7 dated 2024-10-20
DESCRIPTION | 13 +++-- MD5 | 14 +++--- R/RcppExports.R | 4 + R/model_land.R | 115 ++++++++++++++++++++++++++++++++++----------------- R/sysdata.rda |binary man/spwb_land_day.Rd | 4 - src/RcppExports.cpp | 10 ++++ src/spwbland.cpp | 23 ++++++++-- 8 files changed, 127 insertions(+), 56 deletions(-)
Title: Create Tables from Different Types of Regression
Description: Create regression tables from generalized linear model(GLM), generalized estimating equation(GEE), generalized linear mixed-effects model(GLMM), Cox proportional hazards model, survey-weighted generalized linear model(svyglm) and survey-weighted Cox model results for publication.
Author: Jinseob Kim [aut, cre] ,
Zarathu [cph, fnd],
Yoonkyoung Jeon [aut],
Jaehun Shon [aut],
Hyojong Myung [aut]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jstable versions 1.3.4 dated 2024-09-24 and 1.3.5 dated 2024-10-20
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 3 +++ R/forestglm.R | 14 ++++++++------ inst/doc/jstable.html | 30 +++++++++++++++--------------- 5 files changed, 34 insertions(+), 29 deletions(-)
Title: Finds the Geometrical Archetypal Analysis of a Data Frame
Description: Performs Geometrical Archetypal Analysis after creating Grid Archetypes
which are the Cartesian Product of all minimum, maximum variable values. Since the archetypes
are fixed now, we have the ability to compute the convex composition coefficients for all
our available data points much faster by using the half part of Principal Convex Hull Archetypal method.
Additionally we can decide to keep as archetypes the closer to the Grid Archetypes ones. Finally
the number of archetypes is always 2 to the power of the dimension of our data points
if we consider them as a vector space.
Cutler, A., Breiman, L. (1994) <doi:10.1080/00401706.1994.10485840>.
Morup, M., Hansen, LK. (2012) <doi:10.1016/j.neucom.2011.06.033>.
Christopoulos, DT. (2024) <doi:10.13140/RG.2.2.14030.88642>.
Author: Demetris Christopoulos [aut, cre, cph],
David Midgley [ctb, cph],
Sunil Venaik [ctb],
INSEAD Hoffmann Institute France [fnd],
The University of Queensland Australia [fnd]
Maintainer: Demetris Christopoulos <dchristop@econ.uoa.gr>
Diff between GeomArchetypal versions 1.0.2 dated 2024-06-24 and 1.0.3 dated 2024-10-20
DESCRIPTION | 8 - MD5 | 19 +- NAMESPACE | 2 NEWS.md |only R/BLB_archetypal.R | 296 +++++++++++++++--------------------------- R/print.BLB_archetypal.R | 24 +-- R/summary.BLB_archetypal.R | 77 ++++------ inst/doc/GeomArchetypal.html | 2 man/BLB_archetypal.Rd | 233 ++++++++++++++++----------------- man/print.BLB_archetypal.Rd | 33 ++-- man/summary.BLB_archetypal.Rd | 33 ++-- 11 files changed, 321 insertions(+), 406 deletions(-)
More information about GeomArchetypal at CRAN
Permanent link
Title: Solving Mixed Model Equations in R
Description: Structural multivariate-univariate linear mixed model solver for estimation of multiple random effects with unknown variance-covariance structures (e.g., heterogeneous and unstructured) and known covariance among levels of random effects (e.g., pedigree and genomic relationship matrices) (Covarrubias-Pazaran, 2016 <doi:10.1371/journal.pone.0156744>; Maier et al., 2015 <doi:10.1016/j.ajhg.2014.12.006>; Jensen et al., 1997). REML estimates can be obtained using the Direct-Inversion Newton-Raphson and Direct-Inversion Average Information algorithms for the problems r x r (r being the number of records) or using the Henderson-based average information algorithm for the problem c x c (c being the number of coefficients to estimate). Spatial models can also be fitted using the two-dimensional spline functionality available.
Author: Giovanny Covarrubias-Pazaran [aut, cre]
Maintainer: Giovanny Covarrubias-Pazaran <cova_ruber@live.com.mx>
Diff between sommer versions 4.3.5 dated 2024-07-31 and 4.3.6 dated 2024-10-20
DESCRIPTION | 8 MD5 | 73 ++-- R/FUN_algorithms.R | 15 R/FUN_markers.R | 18 - R/FUN_plotting.R | 15 R/FUN_utils.R | 2 R/mmec.R | 2 R/mmer.R | 2 build/vignette.rds |binary data/DT_augment.RData |binary data/DT_btdata.RData |binary data/DT_cornhybrids.RData |binary data/DT_cpdata.RData |binary data/DT_example.RData |binary data/DT_expdesigns.RData |binary data/DT_fulldiallel.RData |binary data/DT_gryphon.RData |binary data/DT_h2.RData |binary data/DT_halfdiallel.RData |binary data/DT_ige.RData |binary data/DT_legendre.RData |binary data/DT_mohring.RData |binary data/DT_polyploid.RData |binary data/DT_rice.RData |binary data/DT_sleepstudy.RData |binary data/DT_technow.RData |binary data/DT_wheat.RData |binary data/DT_yatesoats.RData |binary inst/doc/rice_example.R |only man/DT_augment.Rd | 10 man/neMarker.Rd | 16 - man/rrc.Rd | 2 vignettes/v1.sommer.quick.start.html | 463 ++++++++++++++---------------- vignettes/v2.sommer.changes.and.faqs.html | 4 vignettes/v3.sommer.qg.html | 10 vignettes/v4.sommer.gxe.html | 4 vignettes/v5.sommer.vs.lme4.html | 4 vignettes/v6.sommer.spatial.html | 4 38 files changed, 332 insertions(+), 320 deletions(-)
Title: Finite Mixture Modeling for Raw and Binned Data
Description: Performs maximum likelihood estimation for finite mixture models for families including Normal, Weibull, Gamma and Lognormal by using EM algorithm, together with Newton-Raphson algorithm or bisection method when necessary. It also conducts mixture model selection by using information criteria or bootstrap likelihood ratio test. The data used for mixture model fitting can be raw data or binned data. The model fitting process is accelerated by using R package 'Rcpp'.
Author: Youjiao Yu [aut, cre]
Maintainer: Youjiao Yu <jiaoisjiao@gmail.com>
Diff between mixR versions 0.2.0 dated 2021-06-01 and 0.2.1 dated 2024-10-20
mixR-0.2.0/mixR/build |only mixR-0.2.0/mixR/inst |only mixR-0.2.0/mixR/vignettes |only mixR-0.2.1/mixR/DESCRIPTION | 18 +- mixR-0.2.1/mixR/MD5 | 58 +++---- mixR-0.2.1/mixR/NAMESPACE | 4 mixR-0.2.1/mixR/NEWS.md | 9 - mixR-0.2.1/mixR/R/RcppExports.R | 88 ++++++------ mixR-0.2.1/mixR/R/bs.test.R | 20 ++ mixR-0.2.1/mixR/R/check_inputs_for_rmix.R |only mixR-0.2.1/mixR/R/gammaEM.R | 3 mixR-0.2.1/mixR/R/gammaEM2.R | 1 mixR-0.2.1/mixR/R/initz.R | 1 mixR-0.2.1/mixR/R/lnormEM.R | 2 mixR-0.2.1/mixR/R/lnormEM2.R | 3 mixR-0.2.1/mixR/R/normalEM.R | 4 mixR-0.2.1/mixR/R/normalEM2.R | 2 mixR-0.2.1/mixR/R/plot.R | 2 mixR-0.2.1/mixR/R/plot.selectEM.R | 20 +- mixR-0.2.1/mixR/R/print.selectEM.R | 2 mixR-0.2.1/mixR/R/rmixgamma.R | 11 - mixR-0.2.1/mixR/R/rmixlnorm.R | 9 - mixR-0.2.1/mixR/R/rmixnormal.R | 9 - mixR-0.2.1/mixR/R/rmixweibull.R | 9 - mixR-0.2.1/mixR/R/weibullEM.R | 1 mixR-0.2.1/mixR/R/weibullEM2.R | 3 mixR-0.2.1/mixR/README.md | 2 mixR-0.2.1/mixR/man/bs.test.Rd | 2 mixR-0.2.1/mixR/man/print.selectEM.Rd | 2 mixR-0.2.1/mixR/src/RcppExports.cpp | 5 mixR-0.2.1/mixR/tests/testthat/test_check_inputs_for_rmix.R |only 31 files changed, 155 insertions(+), 135 deletions(-)
Title: Non-Local Prior Based Iterative Variable Selection Tool for
Genome-Wide Association Studies
Description: Performs variable selection with data from Genome-wide association studies (GWAS), or other high-dimensional data with continuous, binary or survival outcomes, combining in an iterative framework the computational efficiency of the structured screen-and-select variable selection strategy based on some association learning and the parsimonious uncertainty quantification provided by the use of non-local priors (see Sanyal et al., 2019 <DOI:10.1093/bioinformatics/bty472>).
Author: Nilotpal Sanyal [aut, cre]
Maintainer: Nilotpal Sanyal <nilotpal.sanyal@gmail.com>
Diff between GWASinlps versions 2.2 dated 2022-11-23 and 2.3 dated 2024-10-20
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS | 4 ++++ NEWS.md | 4 ++++ README.md | 18 +++++++++++------- man/GWASinlps-package.Rd | 4 ++-- man/GWASinlps.Rd | 3 +-- src/Makevars | 2 +- src/Makevars.win | 2 +- 9 files changed, 36 insertions(+), 25 deletions(-)
Title: Differentially Private Statistical Analysis and Machine Learning
Description: An implementation of common statistical analysis and models with
differential privacy (Dwork et al., 2006a) <doi:10.1007/11681878_14>
guarantees. The package contains, for example, functions providing
differentially private computations of mean, variance, median, histograms,
and contingency tables. It also implements some statistical models and
machine learning algorithms such as linear regression (Kifer et al., 2012)
<https://proceedings.mlr.press/v23/kifer12.html>
and SVM (Chaudhuri et al., 2011)
<https://jmlr.org/papers/v12/chaudhuri11a.html>. In addition, it implements
some popular randomization mechanisms, including
the Laplace mechanism (Dwork et al., 2006a)
<doi:10.1007/11681878_14>, Gaussian mechanism (Dwork et al., 2006b)
<doi:10.1007/11761679_29>, analytic Gaussian mechanism (Balle & Wang, 2018)
<https://proceedings.mlr.press/v80/balle18a.html>, and exponential mechanism
(McSherry & Talwar, 2007) <doi:10.1109/FOCS.2007.66>.
Author: Spencer Giddens [aut, cre],
Fang Liu [ctb]
Maintainer: Spencer Giddens <giddens2spencer@gmail.com>
Diff between DPpack versions 0.2.1 dated 2024-10-10 and 0.2.2 dated 2024-10-20
DESCRIPTION | 6 +- MD5 | 20 ++++----- R/StatFunctions.R | 77 +++++++++++++++++------------------- R/StatFunctions_test.R | 77 ++++++++++++++++++++++++++++++------ R/StatModels.R | 50 +++++++++++------------ build/partial.rdb |binary man/histogramDP.Rd | 15 +++++-- man/medianDP.Rd | 13 ------ man/quantileDP.Rd | 15 ------- man/tune_classification_model.Rd | 12 ++--- man/tune_linear_regression_model.Rd | 12 ++--- 11 files changed, 168 insertions(+), 129 deletions(-)