Title: Bottom-Up Proteomics and LiP-MS Quality Control and Data
Analysis Tools
Description: Useful functions and workflows for proteomics quality control and data analysis of both limited proteolysis-coupled mass spectrometry (LiP-MS) (Feng et. al. (2014) <doi:10.1038/nbt.2999>) and regular bottom-up proteomics experiments. Data generated with search tools such as 'Spectronaut', 'MaxQuant' and 'Proteome Discover' can be easily used due to flexibility of functions.
Author: Jan-Philipp Quast [aut, cre] ,
Dina Schuster [aut] ,
ETH Zurich [cph, fnd]
Maintainer: Jan-Philipp Quast <quast@imsb.biol.ethz.ch>
Diff between protti versions 0.9.0 dated 2024-07-15 and 0.9.1 dated 2024-10-21
DESCRIPTION | 10 - MD5 | 61 +++--- NAMESPACE | 1 NEWS.md | 5 R/calculate_protein_abundance.R | 7 R/data.R | 8 R/fetch_eco.R | 3 R/fetch_mobidb.R | 2 R/try_query.R | 44 ++++ README.md | 106 +++++------ build/partial.rdb |only build/vignette.rds |binary inst/doc/data_analysis_dose_response_workflow.Rmd | 8 inst/doc/data_analysis_dose_response_workflow.html | 38 +-- inst/doc/data_analysis_single_dose_treatment_workflow.Rmd | 2 inst/doc/data_analysis_single_dose_treatment_workflow.html | 12 - inst/doc/input_preparation_workflow.Rmd | 2 inst/doc/input_preparation_workflow.html | 13 - inst/doc/protein_structure_workflow.html | 8 inst/doc/quality_control_workflow.html | 8 man/calculate_protein_abundance.Rd | 3 man/fetch_eco.Rd | 3 man/fetch_mobidb.Rd | 2 man/figures/README-volcano-1.png |binary man/ptsi_pgk.Rd | 4 man/rapamycin_10uM.Rd | 2 man/rapamycin_dose_response.Rd | 2 man/try_query.Rd | 3 tests/testthat/test-fetch_extract_and_enrichment_functions.R | 2 vignettes/data_analysis_dose_response_workflow.Rmd | 8 vignettes/data_analysis_single_dose_treatment_workflow.Rmd | 2 vignettes/input_preparation_workflow.Rmd | 2 32 files changed, 208 insertions(+), 163 deletions(-)
Title: Extracting and Visualizing Output from 'jagsUI'
Description: Tools are provided to streamline Bayesian analyses in 'JAGS' using
the 'jagsUI' package. Included are functions for extracting output in
simpler format, functions for streamlining assessment of convergence, and
functions for producing summary plots of output. Also included is a
function that provides a simple template for running 'JAGS' from 'R'.
Referenced materials can be found at <DOI:10.1214/ss/1177011136>.
Author: Matt Tyers [aut, cre]
Maintainer: Matt Tyers <matttyersstat@gmail.com>
Diff between jagshelper versions 0.3.2 dated 2024-08-19 and 0.4.0 dated 2024-10-21
DESCRIPTION | 8 - MD5 | 32 ++--- NAMESPACE | 3 NEWS.md | 4 R/caterpillar.R | 4 R/kfold.R |only README.md | 5 build/vignette.rds |binary inst/doc/jagshelper-vignette.Rmd | 6 inst/doc/jagshelper-vignette.html | 46 ++++--- man/asdf_prior_jags_out.Rd | 34 ++--- man/comparepriors.Rd | 84 ++++++------- man/jagshelper-package.Rd | 6 man/kfold.Rd |only man/plot_postpred.Rd | 240 +++++++++++++++++++------------------- man/ts_postpred.Rd | 196 +++++++++++++++---------------- tests/testthat/test_jagshelper.R | 91 ++++++++++++++ vignettes/jagshelper-vignette.Rmd | 6 18 files changed, 449 insertions(+), 316 deletions(-)
Title: 'Drat' R Archive Template
Description: Creation and use of R Repositories via helper functions
to insert packages into a repository, and to add repository information
to the current R session. Two primary types of repositories are support:
gh-pages at GitHub, as well as local repositories on either the same machine
or a local network. Drat is a recursive acronym: Drat R Archive Template.
Author: Dirk Eddelbuettel [aut, cre] ,
Felix Ernst [ctb] ,
Neal Fultz [ctb],
Colin Gillespie [ctb] ,
Christoph Stepper [ctb],
Thomas Leeper [ctb] ,
Mark van der Loo [ctb] ,
Jan Gorecki [ctb],
Joey Reid [ctb],
Arne Johannes Holmin [ctb]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between drat versions 0.2.4 dated 2023-10-09 and 0.2.5 dated 2024-10-21
ChangeLog | 31 +++++++ DESCRIPTION | 36 ++++++-- MD5 | 38 ++++---- R/insertPackage.R | 22 ++++- README.md | 4 build/vignette.rds |binary inst/NEWS.Rd | 9 ++ inst/doc/CombiningDratAndTravis.html | 150 ++++++++++++++++++----------------- inst/doc/DratFAQ.html | 150 ++++++++++++++++++----------------- inst/doc/DratForPackageAuthors.html | 150 ++++++++++++++++++----------------- inst/doc/DratForPackageUsers.html | 150 ++++++++++++++++++----------------- inst/doc/DratStepByStep.html | 150 ++++++++++++++++++----------------- inst/doc/WhyDrat.html | 150 ++++++++++++++++++----------------- man/addRepo.Rd | 1 man/archivePackages.Rd | 20 +--- man/getPackageInfo.Rd | 9 +- man/initRepo.Rd | 7 - man/insertPackage.Rd | 20 ++-- man/pruneRepo.Rd | 48 +++-------- tests/skeleton_git2r.R | 2 20 files changed, 627 insertions(+), 520 deletions(-)
Title: Radiocarbon Equations
Description: Provides functions for the calibration of radiocarbon dates, as well as options to calculate different radiocarbon realms (C14 age, F14C, pMC, D14C) and estimating the effects of contamination or local reservoir offsets (Reimer and Reimer 2001 <doi:10.1017/S0033822200038339>). The methods follow long-established recommendations such as Stuiver and Polach (1977) <doi:10.1017/S0033822200003672> and Reimer et al. (2004) <doi:10.1017/S0033822200033154>. This package accompanies the data package 'rintcal'.
Author: Maarten Blaauw [aut, cre]
Maintainer: Maarten Blaauw <maarten.blaauw@qub.ac.uk>
Diff between rice versions 0.2.0 dated 2024-09-24 and 0.3.0 dated 2024-10-21
rice-0.2.0/rice/man/D14C.F14C.Rd |only rice-0.2.0/rice/man/F14C.D14C.Rd |only rice-0.2.0/rice/man/calBP.14C.Rd |only rice-0.3.0/rice/DESCRIPTION | 9 rice-0.3.0/rice/MD5 | 88 +++-- rice-0.3.0/rice/NAMESPACE | 31 +- rice-0.3.0/rice/NEWS.md | 26 + rice-0.3.0/rice/R/calc.R | 273 ++++++++---------- rice-0.3.0/rice/R/calibrate.R | 172 ++++++++--- rice-0.3.0/rice/R/plots.R | 398 +++++++++++++++----------- rice-0.3.0/rice/R/realms.R |only rice-0.3.0/rice/R/rice-package.R | 2 rice-0.3.0/rice/R/rice.R | 12 rice-0.3.0/rice/R/shroud.R |only rice-0.3.0/rice/build/partial.rdb |binary rice-0.3.0/rice/build/vignette.rds |binary rice-0.3.0/rice/data/shroud.rda |only rice-0.3.0/rice/inst/doc/rice.R | 70 +++- rice-0.3.0/rice/inst/doc/rice.Rmd | 151 +++++++--- rice-0.3.0/rice/inst/doc/rice.html | 487 ++++++++++++++++++++++----------- rice-0.3.0/rice/man/BCADtoC14.Rd |only rice-0.3.0/rice/man/BCADtoD14C.Rd |only rice-0.3.0/rice/man/BCADtoF14C.Rd |only rice-0.3.0/rice/man/BCADtocalBP.Rd |only rice-0.3.0/rice/man/BCADtopMC.Rd |only rice-0.3.0/rice/man/C14toD14C.Rd |only rice-0.3.0/rice/man/C14toF14C.Rd |only rice-0.3.0/rice/man/C14topMC.Rd |only rice-0.3.0/rice/man/D14CtoC14.Rd |only rice-0.3.0/rice/man/D14CtoF14C.Rd |only rice-0.3.0/rice/man/D14CtopMC.Rd |only rice-0.3.0/rice/man/F14C.age.Rd | 8 rice-0.3.0/rice/man/F14CtoC14.Rd |only rice-0.3.0/rice/man/F14CtoD14C.Rd |only rice-0.3.0/rice/man/F14CtopMC.Rd |only rice-0.3.0/rice/man/age.F14C.Rd | 9 rice-0.3.0/rice/man/age.pMC.Rd | 10 rice-0.3.0/rice/man/calBPtoBCAD.Rd |only rice-0.3.0/rice/man/calBPtoC14.Rd |only rice-0.3.0/rice/man/calBPtoD14C.Rd |only rice-0.3.0/rice/man/calBPtoF14C.Rd |only rice-0.3.0/rice/man/calBPtopMC.Rd |only rice-0.3.0/rice/man/caldist.Rd | 12 rice-0.3.0/rice/man/calib.t.Rd |only rice-0.3.0/rice/man/calibrate.Rd | 23 + rice-0.3.0/rice/man/contaminate.Rd | 2 rice-0.3.0/rice/man/decontaminate.Rd |only rice-0.3.0/rice/man/draw.dates.Rd | 14 rice-0.3.0/rice/man/fractions.Rd |only rice-0.3.0/rice/man/hpd.Rd | 4 rice-0.3.0/rice/man/l.calib.Rd | 9 rice-0.3.0/rice/man/older.Rd | 3 rice-0.3.0/rice/man/pMC.age.Rd | 13 rice-0.3.0/rice/man/pMCtoC14.Rd |only rice-0.3.0/rice/man/pMCtoD14C.Rd |only rice-0.3.0/rice/man/pMCtoF14C.Rd |only rice-0.3.0/rice/man/point.estimates.Rd | 5 rice-0.3.0/rice/man/pool.Rd |only rice-0.3.0/rice/man/shroud.Rd |only rice-0.3.0/rice/man/smooth.curve.Rd |only rice-0.3.0/rice/man/younger.Rd | 3 rice-0.3.0/rice/vignettes/rice.Rmd | 151 +++++++--- 62 files changed, 1274 insertions(+), 711 deletions(-)
Title: Various Methods for the Two Sample Problem
Description: The routine twosample_test() in this package runs the
two sample test using various test statistic. The p values are
found via permutation or large sample theory. The routine twosample_power() allows the
calculation of the power in various cases, and plot_power()
draws the corresponding power graphs.
Author: Wolfgang Rolke [aut, cre]
Maintainer: Wolfgang Rolke <wolfgang.rolke@upr.edu>
Diff between R2sample versions 1.1.0 dated 2023-01-23 and 2.2.0 dated 2024-10-21
R2sample-1.1.0/R2sample/R/R2sample-package.R |only R2sample-1.1.0/R2sample/man/TS_cont_cpp.Rd |only R2sample-1.1.0/R2sample/man/TS_disc_cpp.Rd |only R2sample-1.1.0/R2sample/man/bincounter_cpp.Rd |only R2sample-1.1.0/R2sample/man/chi_test_cont_cpp.Rd |only R2sample-1.1.0/R2sample/man/chi_test_disc_cpp.Rd |only R2sample-1.1.0/R2sample/man/perm_test_cpp.Rd |only R2sample-1.1.0/R2sample/man/permute_cont_cpp.Rd |only R2sample-1.1.0/R2sample/man/permute_disc_cpp.Rd |only R2sample-1.1.0/R2sample/man/power_cpp.Rd |only R2sample-1.1.0/R2sample/man/rep_cpp.Rd |only R2sample-1.1.0/R2sample/man/weights_cpp.Rd |only R2sample-1.1.0/R2sample/src/TS_cont_cpp.cpp |only R2sample-1.1.0/R2sample/src/TS_cont_cpp.h |only R2sample-1.1.0/R2sample/src/TS_disc_cpp.cpp |only R2sample-1.1.0/R2sample/src/TS_disc_cpp.h |only R2sample-1.1.0/R2sample/src/bincounter_cpp.cpp |only R2sample-1.1.0/R2sample/src/bincounter_cpp.h |only R2sample-1.1.0/R2sample/src/chi_test_cont_cpp.cpp |only R2sample-1.1.0/R2sample/src/chi_test_cont_cpp.h |only R2sample-1.1.0/R2sample/src/chi_test_disc_cpp.cpp |only R2sample-1.1.0/R2sample/src/chi_test_disc_cpp.h |only R2sample-1.1.0/R2sample/src/perm_test_cpp.cpp |only R2sample-1.1.0/R2sample/src/permute_cont_cpp.cpp |only R2sample-1.1.0/R2sample/src/permute_cont_cpp.h |only R2sample-1.1.0/R2sample/src/permute_disc_cpp.cpp |only R2sample-1.1.0/R2sample/src/permute_disc_cpp.h |only R2sample-1.1.0/R2sample/src/power_cpp.cpp |only R2sample-1.1.0/R2sample/src/rep_cpp.cpp |only R2sample-1.1.0/R2sample/src/rep_cpp.h |only R2sample-1.1.0/R2sample/src/weights_cpp.cpp |only R2sample-1.1.0/R2sample/src/weights_cpp.h |only R2sample-2.2.0/R2sample/DESCRIPTION | 13 R2sample-2.2.0/R2sample/MD5 | 121 +-- R2sample-2.2.0/R2sample/NAMESPACE | 4 R2sample-2.2.0/R2sample/NEWS.md | 6 R2sample-2.2.0/R2sample/R/RcppExports.R | 150 ++- R2sample-2.2.0/R2sample/R/asymptotic_pvalues.R |only R2sample-2.2.0/R2sample/R/chi_power.R |only R2sample-2.2.0/R2sample/R/chi_test.R |only R2sample-2.2.0/R2sample/R/extra.R |only R2sample-2.2.0/R2sample/R/plot_power.R | 26 R2sample-2.2.0/R2sample/R/power_cont_LS.R |only R2sample-2.2.0/R2sample/R/signif.digits.R |only R2sample-2.2.0/R2sample/R/twosample_power.R | 234 ++++- R2sample-2.2.0/R2sample/R/twosample_test.R | 232 +++-- R2sample-2.2.0/R2sample/R/twosample_test_adjusted_pvalue.R |only R2sample-2.2.0/R2sample/build/vignette.rds |binary R2sample-2.2.0/R2sample/inst/doc/R2sample.R | 70 + R2sample-2.2.0/R2sample/inst/doc/R2sample.Rmd | 242 ++++-- R2sample-2.2.0/R2sample/inst/doc/R2sample.html | 400 ++++++---- R2sample-2.2.0/R2sample/inst/examples |only R2sample-2.2.0/R2sample/inst/extdata |only R2sample-2.2.0/R2sample/inst/shiny-example/r2sample_shiny/server.R | 14 R2sample-2.2.0/R2sample/inst/shiny-example/r2sample_shiny/ui.R | 13 R2sample-2.2.0/R2sample/man/Cpporder.Rd |only R2sample-2.2.0/R2sample/man/TS_cont.Rd |only R2sample-2.2.0/R2sample/man/TS_disc.Rd |only R2sample-2.2.0/R2sample/man/TSw_cont.Rd |only R2sample-2.2.0/R2sample/man/TSw_disc.Rd |only R2sample-2.2.0/R2sample/man/asymptotic_pvalues.Rd |only R2sample-2.2.0/R2sample/man/bincounter.Rd |only R2sample-2.2.0/R2sample/man/chi_power.Rd |only R2sample-2.2.0/R2sample/man/chi_test.Rd |only R2sample-2.2.0/R2sample/man/perm_test_cont.Rd |only R2sample-2.2.0/R2sample/man/perm_test_disc.Rd |only R2sample-2.2.0/R2sample/man/permute_disc.Rd |only R2sample-2.2.0/R2sample/man/plot_power.Rd | 6 R2sample-2.2.0/R2sample/man/power_cont.Rd |only R2sample-2.2.0/R2sample/man/power_cont_LS.Rd |only R2sample-2.2.0/R2sample/man/power_disc.Rd |only R2sample-2.2.0/R2sample/man/repC.Rd |only R2sample-2.2.0/R2sample/man/signif.digits.Rd |only R2sample-2.2.0/R2sample/man/twosample_power.Rd | 41 - R2sample-2.2.0/R2sample/man/twosample_test.Rd | 47 - R2sample-2.2.0/R2sample/man/twosample_test_adjusted_pvalue.Rd |only R2sample-2.2.0/R2sample/man/wbincounter.Rd |only R2sample-2.2.0/R2sample/man/weights.Rd |only R2sample-2.2.0/R2sample/src/Cpporder.cpp |only R2sample-2.2.0/R2sample/src/Cpporder.h |only R2sample-2.2.0/R2sample/src/RcppExports.cpp | 205 +++-- R2sample-2.2.0/R2sample/src/TS_cont.cpp |only R2sample-2.2.0/R2sample/src/TS_cont.h |only R2sample-2.2.0/R2sample/src/TS_disc.cpp |only R2sample-2.2.0/R2sample/src/TS_disc.h |only R2sample-2.2.0/R2sample/src/TSw_cont.cpp |only R2sample-2.2.0/R2sample/src/TSw_cont.h |only R2sample-2.2.0/R2sample/src/TSw_disc.cpp |only R2sample-2.2.0/R2sample/src/bincounter.cpp |only R2sample-2.2.0/R2sample/src/bincounter.h |only R2sample-2.2.0/R2sample/src/perm_test_cont.cpp |only R2sample-2.2.0/R2sample/src/perm_test_disc.cpp |only R2sample-2.2.0/R2sample/src/permute_disc.cpp |only R2sample-2.2.0/R2sample/src/permute_disc.h |only R2sample-2.2.0/R2sample/src/power_cont.cpp |only R2sample-2.2.0/R2sample/src/power_disc.cpp |only R2sample-2.2.0/R2sample/src/repC.cpp |only R2sample-2.2.0/R2sample/src/repC.h |only R2sample-2.2.0/R2sample/src/wbincounter.cpp |only R2sample-2.2.0/R2sample/src/wbincounter.h |only R2sample-2.2.0/R2sample/src/weights.cpp |only R2sample-2.2.0/R2sample/src/weights.h |only R2sample-2.2.0/R2sample/vignettes/R2sample.Rmd | 242 ++++-- 103 files changed, 1411 insertions(+), 655 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-10-07 0.1.2
Title: PRO-CTCAE Scoring, Analysis, and Graphical Tools
Description: A collection of tools to facilitate standardized analysis
and graphical procedures when using the National Cancer Institute’s
Patient-Reported Outcomes version of the Common Terminology Criteria for
Adverse Events (PRO-CTCAE) and other PRO measurements.
Author: Blake Langlais [aut, cre],
Brie Noble [ctb],
Mia Truman [ctb],
Molly Voss [ctb],
Amylou Dueck [aut]
Maintainer: Blake Langlais <langlais.blake@mayo.edu>
Diff between ProAE versions 1.0.1 dated 2024-06-17 and 1.0.3 dated 2024-10-21
DESCRIPTION | 34 +++++++++---- MD5 | 8 +-- R/toxFigures.R | 7 ++ inst/doc/toxAUC.html | 2 inst/doc/toxTables.html | 125 ++++++++++++++++++++++++++++++++---------------- 5 files changed, 120 insertions(+), 56 deletions(-)
Title: Markov Random Field Structure Estimator
Description: Three algorithms for estimating a Markov random field structure.Two of them are an exact version and a simulated annealing version of a penalized maximum conditional likelihood method similar to the Bayesian Information Criterion. These algorithm are described in Frondana (2016) <doi:10.11606/T.45.2018.tde-02022018-151123>.The third one is a greedy algorithm, described in Bresler (2015) <doi:10.1145/2746539.2746631).
Author: Rodrigo Carvalho [aut, cre],
Florencia Leonardi [rev, ths]
Maintainer: Rodrigo Carvalho <rodrigorsdc@gmail.com>
Diff between mrfse versions 0.4.1 dated 2022-11-16 and 0.4.2 dated 2024-10-21
DESCRIPTION | 12 ++++++------ MD5 | 11 ++++++----- README.md |only src/Makevars | 2 +- src/combination.cpp | 6 +++--- src/product.cpp | 2 +- src/util.cpp | 2 +- 7 files changed, 18 insertions(+), 17 deletions(-)
Title: Wrapper for 'lz-string' 'C++' Library
Description: Provide access to the 'lz-string'
<http://pieroxy.net/blog/pages/lz-string/index.html> 'C++' library for
Lempel-Ziv (LZ) based compression and decompression of strings.
Author: Sam Parmar [aut, cre],
Andrey Krasnov [cph] ,
Pawel Rucki [ctb]
Maintainer: Sam Parmar <parmartsam@gmail.com>
Diff between lzstring versions 0.1.2 dated 2024-05-07 and 0.1.3 dated 2024-10-21
DESCRIPTION | 17 ++++++++++++----- MD5 | 8 ++++---- NEWS.md | 8 ++++---- R/lzstringr-package.R | 2 +- README.md | 3 ++- 5 files changed, 23 insertions(+), 15 deletions(-)
Title: Statistics Norway's Miscellaneous Tools
Description: Functions used by other packages from Statistics Norway are gathered. General data manipulation functions, algorithms for statistical disclosure control (Langsrud, 2024) <doi:10.1007/978-3-031-69651-0_6> and functions for hierarchical computations by sparse model matrices are included (Langsrud, 2023) <doi:10.32614/RJ-2023-088>.
Author: Oeyvind Langsrud [aut, cre] ,
Daniel Lupp [aut] ,
Bjoern-Helge Mevik [ctb],
Vidar Norstein Klungre [rev] ,
Statistics Norway [cph]
Maintainer: Oeyvind Langsrud <oyl@ssb.no>
Diff between SSBtools versions 1.5.4 dated 2024-09-20 and 1.5.5 dated 2024-10-21
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NAMESPACE | 1 + NEWS.md | 7 +++++++ R/FormulaSelection.R | 15 ++++++++++++++- man/FormulaSelection.Rd | 13 ++++++++++--- 6 files changed, 41 insertions(+), 13 deletions(-)
Title: Package to Patch '.dvi' or '.synctex' Files
Description: Functions to patch specials in '.dvi' files,
or entries in '.synctex' files. Works with concordance=TRUE
in Sweave, knitr or R Markdown to link sources to previews.
Author: Duncan Murdoch [aut, cre]
Maintainer: Duncan Murdoch <murdoch.duncan@gmail.com>
Diff between patchDVI versions 1.11.0 dated 2023-03-14 and 1.11.3 dated 2024-10-21
DESCRIPTION | 14 ++++++++------ MD5 | 28 ++++++++++++++-------------- NEWS.md | 6 ++++++ R/patchLog.R | 24 ++++++++++++++---------- R/patchPDF.R | 3 +-- R/patchmark.R | 41 +++++++++++++++++++++++++++++++++++++---- R/zzz.R | 10 ++++++---- build/vignette.rds |binary inst/doc/Japanese.pdf |binary inst/doc/patchDVI.Rmd | 2 +- inst/doc/patchDVI.html | 41 +++++++++++++++++++++-------------------- man/pdf_documentC.Rd | 11 ++++++++--- src/patchDVI.c | 2 +- vignettes/patchDVI.Rmd | 2 +- vignettes/patchDVI.bib | 2 +- 15 files changed, 119 insertions(+), 67 deletions(-)
Title: Estimation of Fuzzy Poverty Measures
Description: Estimates fuzzy measures of poverty and deprivation. It also estimates the sampling variance of these measures using bootstrap or jackknife repeated replications.
Author: Federico Crescenzi [aut, cre] ,
Lorenzo Mori [aut] ,
Gianni Betti [ctb]
Maintainer: Federico Crescenzi <federico.crescenzi@unitus.it>
Diff between FuzzyPovertyR versions 3.0.1 dated 2024-10-03 and 3.0.2 dated 2024-10-21
DESCRIPTION | 6 +-- MD5 | 22 ++++++------ R/eq_predicate.R | 2 - R/fm_var.R | 57 +++++++++++++++++++++++++------- R/fs_var.R | 78 +++++++++++++++++++++++++++++++++++++------- inst/doc/FuzzyPovertyR.R | 10 +++-- inst/doc/FuzzyPovertyR.Rmd | 10 +++-- inst/doc/FuzzyPovertyR.html | 23 +++++++----- man/eq_predicate.Rd | 2 - man/fm_var.Rd | 5 ++ man/fs_var.Rd | 3 + vignettes/FuzzyPovertyR.Rmd | 10 +++-- 12 files changed, 169 insertions(+), 59 deletions(-)
Title: Automated Topic Labeling with Language Models
Description: Leveraging (large) language models for automatic topic labeling. The main function converts a list of top terms into a label for each topic. Hence, it is complementary to any topic modeling package that produces a list of top terms for each topic. While human judgement is indispensable for topic validation (i.e., inspecting top terms and most representative documents), automatic topic labeling can be a valuable tool for researchers in various scenarios.
Author: Jonas Rieger [aut, cre] ,
Fritz Peters [aut] ,
Andreas Fischer [aut] ,
Tim Lauer [aut] ,
Andre Bittermann [aut]
Maintainer: Jonas Rieger <rieger@statistik.tu-dortmund.de>
Diff between topiclabels versions 0.1.0 dated 2024-07-27 and 0.2.0 dated 2024-10-21
DESCRIPTION | 10 +++++----- MD5 | 16 +++++++++------- NAMESPACE | 2 ++ R/helpers.R | 5 ++++- R/label_topics.R | 50 +++++++++++++++++++++++++++++++++++++++++++++++--- README.md | 24 +++++++++++++++++++----- inst/CITATION | 5 +++-- man/figures |only man/label_topics.Rd | 25 +++++++++++++++++++++---- 9 files changed, 110 insertions(+), 27 deletions(-)
Title: 1d Goodness of Fit Tests
Description: Routines that allow the user to run a large number of goodness-of-fit tests.
It allows for data to be continuous or discrete. It includes routines to estimate
the power of the tests and display them as a power graph.
Author: Wolfgang Rolke [aut, cre]
Maintainer: Wolfgang Rolke <wolfgang.rolke@upr.edu>
Diff between Rgof versions 2.1.0 dated 2024-10-08 and 2.1.1 dated 2024-10-21
DESCRIPTION | 7 - MD5 | 27 ++--- NEWS.md | 3 R/gof_power.R | 14 +- R/gof_test.R | 20 ++-- R/gof_test_adjusted_pvalue.R | 13 +- R/gof_test_cont_adj.R | 1 R/gof_test_disc_adj.R | 4 inst/doc/Rgof.R | 30 ++++++ inst/doc/Rgof.Rmd | 50 ++++++++++ inst/doc/Rgof.html | 187 +++++++++++++++++++++++++--------------- inst/extdata |only man/gof_test_adjusted_pvalue.Rd | 2 man/gof_test_disc_adj.Rd | 2 vignettes/Rgof.Rmd | 50 ++++++++++ 15 files changed, 294 insertions(+), 116 deletions(-)
Title: Species Sensitivity Distributions
Description: Species sensitivity distributions are cumulative probability
distributions which are fitted to toxicity concentrations for
different species as described by Posthuma et al.(2001)
<isbn:9781566705783>. The ssdtools package uses Maximum Likelihood to
fit distributions such as the gamma, log-logistic, log-normal and
log-normal log-normal mixture. Multiple distributions can be averaged
using Akaike Information Criteria. Confidence intervals on hazard
concentrations and proportions are produced by parametric
bootstrapping.
Author: Joe Thorley [aut, cre] ,
Rebecca Fisher [aut],
David Fox [aut],
Carl Schwarz [aut],
Angeline Tillmanns [ctb],
Seb Dalgarno [ctb] ,
Kathleen McTavish [ctb],
Heather Thompson [ctb],
Doug Spry [ctb],
Rick van Dam [ctb],
Graham Batley [ctb],
Tony Bigwood [...truncated...]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between ssdtools versions 2.0.0 dated 2024-10-09 and 2.1.0 dated 2024-10-21
DESCRIPTION | 6 +- MD5 | 38 +++++++------- NAMESPACE | 3 + NEWS.md | 6 ++ R/exposure.R | 2 R/multi.R | 51 +++++++++++++------ R/params.R | 1 R/test-helpers.R | 28 +++++++--- README.md | 18 ++++++ inst/doc/additional-technical-details.html | 4 - inst/doc/customising-plots.html | 4 - inst/doc/distributions.html | 4 - inst/doc/model-averaging.html | 4 - inst/doc/ssdtools.html | 4 - man/params.Rd | 2 man/ssd_p.Rd | 15 ++++- man/ssd_q.Rd | 15 ++++- man/ssd_r.Rd | 16 ++++-- tests/testthat/test-multi.R | 77 ++++++++++++++++------------- tests/testthat/test-weibull.R | 1 20 files changed, 198 insertions(+), 101 deletions(-)
Title: Parallel Mutual Information Estimation for Gene Network
Reconstruction
Description: Parallel estimation of the mutual information based on entropy
estimates from k-nearest neighbors distances and algorithms for the
reconstruction of gene regulatory networks
(Sales et al, 2011 <doi:10.1093/bioinformatics/btr274>).
Author: Gabriele Sales [aut, cre],
Chiara Romualdi [aut]
Maintainer: Gabriele Sales <gabriele.sales@unipd.it>
Diff between parmigene versions 1.1.0 dated 2020-08-03 and 1.1.1 dated 2024-10-21
DESCRIPTION | 22 +++++++++++++++------- MD5 | 8 ++++---- README.md | 4 +++- src/grid.c | 22 +++++++++++----------- src/mi.c | 22 +++++++++++----------- 5 files changed, 44 insertions(+), 34 deletions(-)
Title: Versatile Curation of Table Metadata
Description: A YAML-based
mechanism for working with table metadata. Supports
compact syntax for creating, modifying, viewing, exporting,
importing, displaying, and plotting metadata coded as column
attributes. The 'yamlet' dialect is valid 'YAML' with
defaults and conventions chosen to improve readability.
See ?yamlet, ?decorate, ?modify, ?io_csv, and ?ggplot.decorated.
Author: Tim Bergsma [aut, cre]
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Diff between yamlet versions 1.1.3 dated 2024-10-11 and 1.1.4 dated 2024-10-21
DESCRIPTION | 6 +-- MD5 | 20 +++++----- R/explicit_guide.R | 4 +- R/yamlet_options.R | 2 - inst/doc/scripted-html.html | 4 +- inst/doc/scripted-pdf.pdf |binary inst/doc/yamlet-introduction.html | 4 +- man/implicit_guide.data.frame.Rd | 4 +- man/yamlet_options.Rd | 2 - vignettes/scripted-pdf_files/figure-latex/unnamed-chunk-4-1.pdf |binary vignettes/scripted-pdf_files/figure-latex/unnamed-chunk-5-1.pdf |binary 11 files changed, 23 insertions(+), 23 deletions(-)
Title: Triangulation of Irregularly Spaced Data
Description: A constrained two-dimensional Delaunay triangulation package
providing both triangulation and generation of voronoi mosaics of
irregular spaced data.
Please note that most of the functions are now also covered in package
interp, which is a re-implementation from scratch under a free license
based on a different triangulation algorithm.
Author: Albrecht Gebhardt [aut, cre, cph] ,
R. J. Renka [aut] ,
Stephen Eglen [aut, cph] ,
Sergej Zuyev [aut, cph] ,
Denis White [aut, cph]
Maintainer: Albrecht Gebhardt <albrecht.gebhardt@aau.at>
Diff between tripack versions 1.3-9.1 dated 2020-05-30 and 1.3-9.2 dated 2024-10-21
tripack-1.3-9.1/tripack/ChangeLog |only tripack-1.3-9.1/tripack/src/func.f |only tripack-1.3-9.2/tripack/DESCRIPTION | 35 +++++++++++++++++++++++--------- tripack-1.3-9.2/tripack/MD5 | 8 ++----- tripack-1.3-9.2/tripack/NAMESPACE | 15 ------------- tripack-1.3-9.2/tripack/man/tri.mesh.Rd | 10 +++++++++ 6 files changed, 39 insertions(+), 29 deletions(-)
More information about statforbiology at CRAN
Permanent link
Title: Microclimatic Data Processing
Description: Handling the microclimatic data in R. The 'myClim' workflow begins
at the reading data primary from microclimatic dataloggers,
but can be also reading of meteorological station data from files.
Cleaning time step, time zone settings and metadata collecting is the next step of the work flow.
With 'myClim' tools one can crop, join, downscale, and convert microclimatic data formats, sort them into localities,
request descriptive characteristics and compute microclimatic variables.
Handy plotting functions are provided with smart defaults.
Author: Matej Man [aut],
Vojtech Kalcik [aut, cre],
Martin Macek [aut],
Josef Bruna [aut],
Lucia Hederova [aut],
Jan Wild [aut],
Martin Kopecky [aut],
Institute of Botany of the Czech Academy of Sciences [cph]
Maintainer: Vojtech Kalcik <Vojtech.Kalcik@ibot.cas.cz>
Diff between myClim versions 1.2.0 dated 2024-08-21 and 1.3.0 dated 2024-10-21
DESCRIPTION | 8 MD5 | 65 +-- NAMESPACE | 5 NEWS.md | 21 + R/calib.R | 7 R/common.R | 13 R/info.R | 68 +++ R/join.R | 2 R/model.R | 6 R/myClim-package.R | 2 R/read.R | 51 ++ R/states.R | 352 ++++++++++++++++++- README.md | 4 data/mc_data_example_agg.rda |binary data/mc_data_example_clean.rda |binary data/mc_data_example_raw.rda |binary data/mc_data_sensors.rda |binary inst/doc/myclim-custom-loggers.html | 2 inst/doc/myclim-demo.html | 2 inst/extdata/localities_table.csv | 8 man/mc_Sensor-class.Rd | 2 man/mc_calib_moisture.Rd | 23 + man/mc_info_range.Rd |only man/mc_read_data.Rd | 23 - man/mc_read_files.Rd | 16 man/mc_states_from_sensor.Rd |only man/mc_states_outlier.Rd |only man/mc_states_to_sensor.Rd |only tests/data/HOBO/20024370.txt | 208 +++++------ tests/data/HOBO/2015_10382557.txt | 204 +++++------ tests/data/TOMST-date/data_91171153_2023_11_14_0.csv | 202 +++++----- tests/data/TOMST-date/files_table.csv |only tests/data/joined_TOMST/DP_0595.csv | 100 ++--- tests/testthat/test-info.R | 14 tests/testthat/test-read.R | 23 + tests/testthat/test-states.R | 105 +++++ 36 files changed, 1095 insertions(+), 441 deletions(-)
Title: High Dimensional Categorical Data Visualization
Description: Easy visualization for datasets with more than two categorical variables and additional continuous variables. 'diceplot' is particularly useful for exploring complex categorical data in the context of pathway analysis across multiple conditions. For a detailed documentation please visit <https://dice-and-domino-plot.readthedocs.io/en/latest/>.
Author: Matthias Flotho [aut, cre]
Maintainer: Matthias Flotho <matthias.flotho@ccb.uni-saarland.de>
Diff between diceplot versions 0.1.0 dated 2024-10-17 and 0.1.1 dated 2024-10-21
DESCRIPTION | 9 ++++++--- MD5 | 2 +- 2 files changed, 7 insertions(+), 4 deletions(-)
Title: Another Multidimensional Analysis Package
Description: Tools for Clustering and Principal Component Analysis
(With robust methods, and parallelized functions).
Author: Antoine Lucas [aut, cre]
Maintainer: Antoine Lucas <antoinelucas@gmail.com>
Diff between amap versions 0.8-19.1 dated 2024-09-21 and 0.8-20 dated 2024-10-21
DESCRIPTION | 8 MD5 | 20 R/hcluster.R | 2 build/vignette.rds |binary inst/doc/amap.pdf |binary man/hcluster.Rd | 2 src/distance_T.h.h | 4 src/hclust_T.h | 4 src/hclust_T.h.h | 139 - tests/amap-test.R | 24 tests/amap-test.Rout.save | 5320 ---------------------------------------------- 11 files changed, 228 insertions(+), 5295 deletions(-)
Title: Accelerated Stability Kinetic Modelling
Description: Estimate the Šesták–Berggren kinetic model (degradation model) from experimental data. A
A closed-form (analytic) solution to the degradation model is implemented as a non-linear fit,
allowing for the extrapolation of the degradation of a drug product - both in time and
temperature. Parametric bootstrap, with kinetic parameters drawn from the multivariate
t-distribution, and analytical formulae (the delta method) are available options to calculate
the confidence and prediction intervals.
The results (modelling, extrapolations and statistical intervals) can be visualised
with multiple plots. The examples illustrate the accelerated stability modelling in drugs and
vaccines development.
Author: Bernard G Franq [aut, cph],
Ben Wells [cre],
Alex Ball [ctb]
Maintainer: Ben Wells <benwells@bayezian.com>
Diff between AccelStab versions 2.0.1 dated 2024-03-26 and 2.0.2 dated 2024-10-21
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 14 ++++++++++++++ R/step1_down.R | 20 +++++++++++++++----- R/step1_sample_mvt.R | 21 +++++++++++++++++---- data/potency.rda |binary man/step1_down.Rd | 6 +++--- 7 files changed, 58 insertions(+), 21 deletions(-)
Title: Customizing Structural Equation Modelling Plots
Description: Most function focus on specific ways to customize a graph.
They use a 'qgraph' output as the first argument, and return a
modified 'qgraph' object. This allows the functions to be chained
by a pipe operator.
Author: Shu Fai Cheung [aut, cre] ,
Mark Hok Chio Lai [aut]
Maintainer: Shu Fai Cheung <shufai.cheung@gmail.com>
Diff between semptools versions 0.2.10 dated 2023-10-15 and 0.3.0 dated 2024-10-21
DESCRIPTION | 8 MD5 | 206 NAMESPACE | 45 NEWS.md | 428 + R/add_object.R | 142 R/add_rsq.R |only R/auto_factor_point_to.R | 208 R/auto_indicator_order.R | 220 R/change_node_label.R | 474 +- R/data.R | 112 R/data2.R | 46 R/data_many_controls.R | 38 R/edge_index.R | 62 R/error.R | 46 R/helpers.R | 230 - R/is_dv_residvar.R | 108 R/lavaan_indicator_order.R | 148 R/layout_matrix.R | 98 R/mark_se.R | 401 - R/mark_sig.R | 363 - R/nodes_keep_drop.R | 198 R/rescale_layout.R |only R/rotate_resid.R | 192 R/semptools-package.R | 16 R/set_cfa_layout.R | 586 +- R/set_curve.R | 208 R/set_edge_attribute.R |only R/set_edge_color.R |only R/set_edge_label_position.R | 190 R/set_node_attribute.R |only R/set_sem_layout.R | 1158 ++--- R/to_list_of_lists.R | 185 README.md | 182 build/vignette.rds |binary inst/doc/keep_or_drop_nodes.Rmd | 334 - inst/doc/keep_or_drop_nodes.html | 108 inst/doc/layout_matrix.Rmd | 782 +-- inst/doc/layout_matrix.html | 282 - inst/doc/quick_start_cfa.Rmd | 498 +- inst/doc/quick_start_cfa.html | 146 inst/doc/quick_start_sem.Rmd | 758 +-- inst/doc/quick_start_sem.html | 242 - inst/doc/second_order.Rmd | 348 - inst/doc/second_order.html | 160 inst/doc/semptools.Rmd | 1008 ++-- inst/doc/semptools.html | 416 - man/add_object.Rd | 142 man/add_rsq.Rd |only man/auto_factor_point_to.Rd | 152 man/auto_indicator_order.Rd | 220 man/cfa_example.Rd | 60 man/change_node_label.Rd | 178 man/is_dv_residvar.Rd | 110 man/keep_drop_nodes.Rd | 124 man/lavaan_indicator_order.Rd | 142 man/layout_matrix.Rd | 88 man/mark_se.Rd | 232 - man/mark_sig.Rd | 200 man/pa_example.Rd | 56 man/pa_example_3covs.Rd | 60 man/rescale_layout.Rd |only man/rotate_resid.Rd | 134 man/sem_2nd_order_example.Rd | 70 man/sem_example.Rd | 62 man/semptools-package.Rd | 60 man/set_cfa_layout.Rd | 262 - man/set_curve.Rd | 140 man/set_edge_attribute.Rd |only man/set_edge_color.Rd |only man/set_edge_label_position.Rd | 140 man/set_node_attribute.Rd |only man/set_sem_layout.Rd | 478 +- man/to_list_of_lists.Rd | 98 tests/testthat.R | 8 tests/testthat/test-add_rsq.R |only tests/testthat/test-auto_indicator_order.R | 202 tests/testthat/test-auto_point_to.R | 182 tests/testthat/test-change-node.R | 648 +- tests/testthat/test-change-node_attribute.R | 75 tests/testthat/test-change-node_named_vector.R | 78 tests/testthat/test-check_intercepts.R | 286 - tests/testthat/test-check_ram_lisrel.R | 204 tests/testthat/test-custom-labels.R | 62 tests/testthat/test-keep_drop_nodes.R | 522 +- tests/testthat/test-lavaan_indicator_order.R | 250 - tests/testthat/test-layout_matrix.R | 38 tests/testthat/test-mark.R | 84 tests/testthat/test-mark_se_std.R |only tests/testthat/test-mark_user_p.R |only tests/testthat/test-nCharNodes.R | 174 tests/testthat/test-rescale.R |only tests/testthat/test-semptools.R | 6 tests/testthat/test-set_cfa_layout_after_change_node.R | 80 tests/testthat/test-set_cfa_layout_error_warning.R | 72 tests/testthat/test-set_cfa_layout_orthogonal.R | 156 tests/testthat/test-set_color.R |only tests/testthat/test-set_curve_bidirectional.R | 78 tests/testthat/test-set_edge_attribute.R |only tests/testthat/test-set_edge_attribute_loadings.R |only tests/testthat/test-set_node_attribute.R |only tests/testthat/test-set_sem_layout_2nd_order.R | 260 - tests/testthat/test-set_sem_layout_after_change_node.R | 116 tests/testthat/test-set_sem_layout_error_warning.R | 170 tests/testthat/test-set_sem_layout_single.R | 244 - tests/testthat/test-to_list_of_lists.R | 698 +-- vignettes/articles/apa.csl | 3832 ++++++++--------- vignettes/articles/sem_with_observed.Rmd | 342 - vignettes/keep_or_drop_nodes.Rmd | 334 - vignettes/layout_matrix.Rmd | 782 +-- vignettes/quick_start_cfa.Rmd | 498 +- vignettes/quick_start_sem.Rmd | 758 +-- vignettes/second_order.Rmd | 348 - vignettes/semptools.Rmd | 1008 ++-- 113 files changed, 13694 insertions(+), 13489 deletions(-)
Title: Track your Data Pipelines
Description: Track and
document 'dplyr' data pipelines. As you filter, mutate, and join your
way through a data set, 'dtrackr' seamlessly keeps track of your data
flow and makes publication ready documentation of a data pipeline simple.
Author: Robert Challen [aut, cre]
Maintainer: Robert Challen <rob.challen@bristol.ac.uk>
Diff between dtrackr versions 0.4.4 dated 2023-09-04 and 0.4.6 dated 2024-10-21
DESCRIPTION | 14 +- MD5 | 167 +++++++++++++++++---------------- NAMESPACE | 1 NEWS.md | 27 +++-- R/dtrackr-package.R |only R/dtrackr.R | 81 +++++++++++----- R/experimental/group-counting.R |only build/vignette.rds |binary inst/WORDLIST |only inst/doc/consort-example.Rmd | 4 inst/doc/consort-example.html | 43 ++++---- inst/doc/dtrackr-options.Rmd | 2 inst/doc/dtrackr-options.html | 100 +++++++++---------- inst/doc/dtrackr.R | 2 inst/doc/dtrackr.html | 144 ++++++++++++++-------------- inst/doc/joining-pipelines.html | 28 ++--- man/add_count.trackr_df.Rd | 50 ++++++--- man/add_tally.Rd | 50 ++++++--- man/arrange.trackr_df.Rd | 40 ++++++- man/bind_cols.Rd | 7 + man/bind_rows.Rd | 7 + man/count_subgroup.Rd | 2 man/distinct.trackr_df.Rd | 7 + man/dtrackr-package.Rd |only man/figures/lifecycle-deprecated.svg |only man/figures/lifecycle-experimental.svg |only man/figures/lifecycle-stable.svg |only man/figures/lifecycle-superseded.svg |only man/filter.trackr_df.Rd | 14 ++ man/full_join.trackr_df.Rd | 117 ++++++++++++++++++++++- man/group_by.trackr_df.Rd | 17 ++- man/group_modify.trackr_df.Rd | 18 +++ man/inner_join.trackr_df.Rd | 117 ++++++++++++++++++++++- man/left_join.trackr_df.Rd | 117 ++++++++++++++++++++++- man/mutate.trackr_df.Rd | 42 ++++++-- man/nest_join.trackr_df.Rd | 65 ++++++++++++ man/p_add_count.Rd | 33 +++--- man/p_add_tally.Rd | 37 ++----- man/p_anti_join.Rd | 20 ++- man/p_arrange.Rd | 40 ++++++- man/p_count_subgroup.Rd | 2 man/p_distinct.Rd | 10 + man/p_filter.Rd | 15 +- man/p_full_join.Rd | 83 ++++++++++++++-- man/p_group_by.Rd | 17 ++- man/p_group_modify.Rd | 9 - man/p_inner_join.Rd | 83 ++++++++++++++-- man/p_left_join.Rd | 83 ++++++++++++++-- man/p_mutate.Rd | 58 ++++++++--- man/p_nest_join.Rd | 41 ++++++-- man/p_pivot_longer.Rd | 25 ++-- man/p_pivot_wider.Rd | 31 ++---- man/p_reframe.Rd | 17 ++- man/p_relocate.Rd | 36 ++++--- man/p_rename.Rd | 41 +++++--- man/p_rename_with.Rd | 38 ++++--- man/p_resume.Rd | 17 ++- man/p_right_join.Rd | 83 ++++++++++++++-- man/p_select.Rd | 35 ++++-- man/p_semi_join.Rd | 20 ++- man/p_slice.Rd | 46 ++++++++- man/p_slice_head.Rd | 39 ++++++- man/p_slice_max.Rd | 35 +++++- man/p_slice_min.Rd | 35 +++++- man/p_slice_sample.Rd | 38 ++++++- man/p_slice_tail.Rd | 39 ++++++- man/p_summarise.Rd | 19 ++- man/p_transmute.Rd | 35 ++++-- man/p_ungroup.Rd | 6 - man/pivot_longer.trackr_df.Rd | 81 +++++++++++++++- man/pivot_wider.trackr_df.Rd | 83 ++++++++++++++++ man/relocate.trackr_df.Rd | 24 ++-- man/rename.trackr_df.Rd | 25 +++- man/rename_with.trackr_df.Rd | 25 +++- man/resume.Rd | 30 ++++- man/right_join.trackr_df.Rd | 117 ++++++++++++++++++++++- man/select.trackr_df.Rd | 19 +-- man/semi_join.trackr_df.Rd | 44 ++++++++ man/slice.trackr_df.Rd | 37 +++++++ man/slice_head.trackr_df.Rd | 37 +++++++ man/slice_max.trackr_df.Rd | 37 +++++++ man/slice_min.trackr_df.Rd | 37 +++++++ man/slice_sample.trackr_df.Rd | 37 +++++++ man/slice_tail.trackr_df.Rd | 37 +++++++ man/transmute.trackr_df.Rd | 19 +-- man/ungroup.trackr_df.Rd | 7 - tests/spelling.R |only vignettes/consort-example.Rmd | 4 vignettes/dtrackr-options.Rmd | 2 89 files changed, 2427 insertions(+), 724 deletions(-)
Title: Efficient Monitoring of Global Biodiversity Portfolios
Description: Biodiversity areas, especially primary forest, serve a
multitude of functions for local economy, regional functionality of
the ecosystems as well as the global health of our planet. Recently,
adverse changes in human land use practices and climatic responses to
increased greenhouse gas emissions, put these biodiversity areas under
a variety of different threats. The present package helps to analyse a
number of biodiversity indicators based on freely available
geographical datasets. It supports computational efficient routines
that allow the analysis of potentially global biodiversity portfolios.
The primary use case of the package is to support evidence based
reporting of an organization's effort to protect biodiversity areas
under threat and to identify regions were intervention is most duly
needed.
Author: Darius A. Goergen [aut, cre] ,
Om Prakash Bhandari [aut],
Andreas Petutschnig [ctb]
Maintainer: Darius A. Goergen <info@dariusgoergen.com>
Diff between mapme.biodiversity versions 0.9.2 dated 2024-10-10 and 0.9.3 dated 2024-10-21
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 12 ++++++++++++ R/get_nasa_srtm.R | 2 +- tests/testthat/test-calc_indicator.R | 13 ++++++++++--- 5 files changed, 30 insertions(+), 11 deletions(-)
More information about mapme.biodiversity at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-12 1.2.2
2020-07-28 1.2.1
2019-05-24 1.2.0
Title: An 'openrouteservice' API Client
Description: The client streamlines access to the services provided by <https://api.openrouteservice.org>.
It allows you to painlessly query for directions, isochrones, time-distance matrices, geocoding, elevation, points of interest, and more.
Author: Heidelberg Institute for Geoinformation Technology gGmbH [cph],
Andrzej K. Oles [aut, cre]
Maintainer: Andrzej K. Oles <andrzej.oles@gmail.com>
Diff between openrouteservice versions 0.5.3 dated 2024-10-11 and 0.6.1 dated 2024-10-21
DESCRIPTION | 6 +-- MD5 | 25 +++++++------ NAMESPACE | 1 NEWS.md | 6 +++ R/api_call.R | 3 + R/doc_utils.R | 22 ++++++++---- R/export.R |only README.md | 75 ++++++++++++++++++++++++++++++++++------- inst/doc/openrouteservice.R | 3 + inst/doc/openrouteservice.Rmd | 14 ++++++- inst/doc/openrouteservice.html | 47 ++++++++++++++----------- man/ors_export.Rd |only tests/testthat.Rout |only tests/testthat/test-api_key.R | 17 ++++----- vignettes/openrouteservice.Rmd | 14 ++++++- 15 files changed, 166 insertions(+), 67 deletions(-)
More information about openrouteservice at CRAN
Permanent link
Title: A Collection of Database, Data Structure, Visualization, and
Utility Functions for R
Description: The caroline R library contains dozens of functions useful
for: database migration (dbWriteTable2), database style joins &
aggregation (nerge, groupBy, & bestBy), data structure
conversion (nv, tab2df), legend table making (sstable & leghead),
automatic legend positioning for scatter and box plots (),
plot annotation (labsegs & mvlabs), data visualization
(pies, sparge, confound.grid & raPlot), character string manipulation (m & pad),
file I/O (write.delim), batch scripting, data exploration, and more.
The package's greatest contributions lie in the database style merge,
aggregation and interface functions as well as in it's extensive
use and propagation of row, column and vector names in most functions.
Author: David Schruth [aut, cre]
Maintainer: David Schruth <code@anthropoidea.org>
Diff between caroline versions 0.9.2 dated 2023-11-09 and 0.9.9 dated 2024-10-21
caroline-0.9.2/caroline/R/RAy.R |only caroline-0.9.2/caroline/R/sparge.R |only caroline-0.9.2/caroline/R/spie.R |only caroline-0.9.9/caroline/DESCRIPTION | 31 - caroline-0.9.9/caroline/MD5 | 24 - caroline-0.9.9/caroline/NAMESPACE | 9 caroline-0.9.9/caroline/R/models.R |only caroline-0.9.9/caroline/R/plot.RAy.R |only caroline-0.9.9/caroline/R/plot.hyperplot.R |only caroline-0.9.9/caroline/R/plot.pies.R |only caroline-0.9.9/caroline/R/plot.sparge.R |only caroline-0.9.9/caroline/R/plot.spie.R |only caroline-0.9.9/caroline/R/plot.xy.ap.p.R |only caroline-0.9.9/caroline/R/plots.R | 401 +++------------------- caroline-0.9.9/caroline/R/reporting.R |only caroline-0.9.9/caroline/man/ellipsis.defaults.Rd |only caroline-0.9.9/caroline/man/fit.1ln.rprt.Rd |only caroline-0.9.9/caroline/man/legend.position.Rd |only caroline-0.9.9/caroline/man/plot.confound.grid.Rd |only caroline-0.9.9/caroline/man/plot.sparge.Rd | 89 ++++ caroline-0.9.9/caroline/man/plot.xy.ab.p.Rd |only 21 files changed, 178 insertions(+), 376 deletions(-)