Title: Weighted Mean SHAP for Feature Selection in ML Grid and Ensemble
Description: This R package introduces Weighted Mean SHapley Additive exPlanations (WMSHAP),
an innovative method for calculating SHAP values for a grid of fine-tuned base-learner machine
learning models as well as stacked ensembles, a method not previously available due to the
common reliance on single best-performing models. By integrating the weighted mean
SHAP values from individual base-learners comprising the ensemble or individual
base-learners in a tuning grid search, the package weights SHAP contributions
according to each model's performance, assessed by multiple either R squared
(for both regression and classification models). alternatively, this software
also offers weighting SHAP values based on the area under the precision-recall
curve (AUCPR), the area under the curve (AUC), and F2 measures for binary classifiers.
It further extends this framework to implement weighted confidence intervals for
weighted mean SHAP values, offering a more comprehensive and robust feature importance
eval [...truncated...]
Author: E. F. Haghish [aut, cre, cph]
Maintainer: E. F. Haghish <haghish@hotmail.com>
Diff between shapley versions 0.3 dated 2024-05-30 and 0.4 dated 2024-10-22
DESCRIPTION | 6 ++-- MD5 | 20 +++++++++----- NAMESPACE | 6 ++++ R/shapley.R | 23 ++++++++++------ R/shapley.domain.R |only R/shapley.feature.selection.R | 59 +++++++++++++++++++++++------------------- R/shapley.row.plot.R |only README.md | 58 ++++++++++++++++++++++++++++++++++++++--- man/figures/domain.png |only man/figures/row_index.png |only man/figures/shapley.png |only man/figures/shapleylow.png |only man/shapley.Rd | 8 ++++- man/shapley.domain.Rd |only man/shapley.row.plot.Rd |only 15 files changed, 132 insertions(+), 48 deletions(-)
Title: Data Validation and Organization of Metadata for Local and
Remote Tables
Description: Validate data in data frames, 'tibble' objects, 'Spark'
'DataFrames', and database tables. Validation pipelines can be made using
easily-readable, consecutive validation steps. Upon execution of the
validation plan, several reporting options are available. User-defined
thresholds for failure rates allow for the determination of appropriate
reporting actions. Many other workflows are available including an
information management workflow, where the aim is to record, collect, and
generate useful information on data tables.
Author: Richard Iannone [aut, cre] ,
Mauricio Vargas [aut] ,
June Choe [aut]
Maintainer: Richard Iannone <rich@posit.co>
Diff between pointblank versions 0.12.1 dated 2024-03-25 and 0.12.2 dated 2024-10-22
DESCRIPTION | 14 ++--- MD5 | 60 +++++++++++------------ NEWS.md | 32 ++++++++++++ R/action_levels.R | 2 R/col_schema_match.R | 2 R/column_roles.R | 4 - R/create_agent.R | 2 R/create_multiagent.R | 2 R/datasets.R | 16 +----- R/get_agent_report.R | 64 ++++++++++++++++++------ R/get_multiagent_report.R | 2 R/get_sundered_data.R | 8 +++ R/has_columns.R | 11 ++-- R/info_add.R | 42 +++++++++------- R/interrogate.R | 49 +++++++++++++++--- R/logging.R | 9 --- R/scan_data.R | 24 +-------- R/steps_and_briefs.R | 3 - R/table_transformers.R | 26 --------- R/tbl_from_db.R | 64 ++---------------------- R/tbl_from_file.R | 16 ------ R/utils.R | 99 +++++++++++++++++++++++++++++++++----- R/validate_rmd.R | 16 +----- R/yaml_write.R | 9 +-- man/action_levels.Rd | 2 man/create_agent.Rd | 2 man/interrogate.Rd | 10 +++ man/snip_list.Rd | 7 ++ tests/testthat/test-has_columns.R | 11 +++- tests/testthat/test-snip_fns.R | 24 +++++++++ tests/testthat/test-x_list.R | 4 - 31 files changed, 375 insertions(+), 261 deletions(-)
Title: Nonlinear Mixed Effects Models in Population PK/PD, Estimation
Routines
Description: Fit and compare nonlinear mixed-effects models in
differential equations with flexible dosing information commonly seen
in pharmacokinetics and pharmacodynamics (Almquist, Leander, and
Jirstrand 2015 <doi:10.1007/s10928-015-9409-1>). Differential equation
solving is by compiled C code provided in the 'rxode2' package (Wang,
Hallow, and James 2015 <doi:10.1002/psp4.12052>).
Author: Matthew Fidler [aut, cre] ,
Yuan Xiong [aut],
Rik Schoemaker [aut] ,
Justin Wilkins [aut] ,
Wenping Wang [aut],
Robert Leary [ctb],
Mason McComb [ctb] ,
Vipul Mann [aut],
Mirjam Trame [ctb],
Mahmoud Abdelwahab [ctb],
Teun Post [ctb],
Richard Hooijmai [...truncated...]
Maintainer: Matthew Fidler <matthew.fidler@gmail.com>
Diff between nlmixr2est versions 3.0.0 dated 2024-09-18 and 3.0.1 dated 2024-10-22
DESCRIPTION | 6 - MD5 | 84 ++++++++++++------------ NAMESPACE | 1 NEWS.md | 24 +++++++ R/addCwres.R | 4 - R/focei.R | 114 +++++++++++++++++++++++---------- R/mu2.R | 130 +++++++++++++++++++++++++++++++++++++- R/nlm.R | 8 -- R/nlmShared.R | 6 - R/nlme.R | 16 +--- R/nlminb.R | 2 R/nlmixr2.R | 48 ++++++-------- R/nlmixr2Est.R | 20 ++--- R/nlmixr2_md5.R | 2 R/nlmixr2global.R |only R/nlmixr2output.R | 12 +-- R/nls.R | 18 ++--- R/nmObjGet.R | 6 - R/npde.R | 4 - R/preProcessModel.R | 4 - R/resid.R | 4 - R/rxsolve.R | 44 ++++++------ R/saemControl.R | 2 R/saemRxUiGetModel.R | 3 R/saem_fit.R | 2 R/sharedControl.R | 2 R/timing.R | 87 +++++++++++-------------- R/validate.R | 4 - R/vpc.R | 13 +-- R/zzz.R | 2 src/inner.cpp | 10 ++ src/scale.h | 88 ++++++++++++++++++------- tests/testthat/test-augpred.R | 14 ++-- tests/testthat/test-cov-focei.R | 26 +++++++ tests/testthat/test-fix-cov.R | 22 +++--- tests/testthat/test-fix-eta.R | 6 + tests/testthat/test-focei-1.R |only tests/testthat/test-focei-char.R | 8 +- tests/testthat/test-focei-inner.R | 14 +++- tests/testthat/test-focei-llik.R | 25 +++---- tests/testthat/test-ini-ui.R | 4 - tests/testthat/test-nlm.R | 20 +++-- tests/testthat/test-nls.R | 32 ++++++++- tests/testthat/test-saem-mu.R | 37 ++++++++++ 44 files changed, 657 insertions(+), 321 deletions(-)
Title: Safely Access the RStudio API
Description: Access the RStudio API (if available) and provide informative error
messages when it's not.
Author: Kevin Ushey [aut, cre],
JJ Allaire [aut],
Hadley Wickham [aut],
Gary Ritchie [aut],
RStudio [cph]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between rstudioapi versions 0.17.0 dated 2024-10-16 and 0.17.1 dated 2024-10-22
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 6 ++++++ R/code.R | 4 +++- 4 files changed, 15 insertions(+), 7 deletions(-)
Title: Spatially-Clustered Data Analysis
Description: Contains functions for statistical data analysis based on spatially-clustered techniques.
The package allows estimating the spatially-clustered spatial regression models presented in Cerqueti, Maranzano \& Mattera (2024), "Spatially-clustered spatial autoregressive models
with application to agricultural market concentration in Europe", arXiv preprint 2407.15874 <doi:10.48550/arXiv.2407.15874>.
Specifically, the current release allows the estimation of the spatially-clustered linear regression model (SCLM), the spatially-clustered spatial autoregressive model (SCSAR),
the spatially-clustered spatial Durbin model (SCSEM), and the spatially-clustered linear regression model with spatially-lagged exogenous covariates (SCSLX).
From release 0.0.2, the library contains functions to estimate spatial clustering based on Adiajacent Matrix K-Means (AMKM) as described in Zhou, Liu \& Zhu (2019), "Weighted adjacent matrix for K-means clustering", Multimedia Tools and Applications, 78 [...truncated...]
Author: Paolo Maranzano [aut, cre, cph]
,
Raffaele Mattera [aut, cph] ,
Camilla Lionetti [aut, cph],
Francesco Caccia [aut, cph]
Maintainer: Paolo Maranzano <pmaranzano.ricercastatistica@gmail.com>
Diff between SCDA versions 0.0.1 dated 2024-10-14 and 0.0.2 dated 2024-10-22
DESCRIPTION | 25 ++++++++++++++++++------- MD5 | 10 ++++++---- NAMESPACE | 9 ++++++++- R/SCSR_InfoCrit.R | 2 ++ R/SC_AMKM.R |only man/SCSR_InfoCrit.Rd | 5 +++++ man/SC_AMKM.Rd |only 7 files changed, 39 insertions(+), 12 deletions(-)
Title: 'Lua'-Filters for R Markdown
Description: A collection of 'Lua' filters that extend the functionality
of R Markdown templates (e.g., count words or post-process citations).
Author: Frederik Aust [aut, cre] ,
Marius Barth [ctb]
Maintainer: Frederik Aust <frederik.aust@uni-koeln.de>
Diff between rmdfiltr versions 0.1.4 dated 2024-10-16 and 0.1.5 dated 2024-10-22
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/replace_doi.R | 2 +- inst/doc/doi2cite.html | 4 ++-- inst/doc/replace_ampersands.html | 2 +- inst/doc/wordcount.html | 6 +++--- 7 files changed, 20 insertions(+), 16 deletions(-)
Title: Analyze Nominal Response Data with the Multinomial-Poisson Trick
Description: Dichotomous responses having two categories can be analyzed
with stats::glm() or lme4::glmer() using the family=binomial option.
Unfortunately, polytomous responses with three or more unordered
categories cannot be analyzed similarly because there is no analogous
family=multinomial option. For between-subjects data,
nnet::multinom() can address this need, but it cannot handle random
factors and therefore cannot handle repeated measures. To address this
gap, we transform nominal response data into counts for each categorical
alternative. These counts are then analyzed using (mixed) Poisson regression
as per Baker (1994) <doi:10.2307/2348134>. Omnibus analyses of variance can be
run along with post hoc pairwise comparisons. For users wishing to analyze nominal
responses from surveys or experiments, the functions in this package essentially
act as though stats::glm() or lme4::glmer() had a family=multinomial option.
Author: Jacob O. Wobbrock [aut, cre, cph]
Maintainer: Jacob O. Wobbrock <wobbrock@uw.edu>
Diff between multpois versions 0.1.0 dated 2024-10-16 and 0.2.0 dated 2024-10-22
DESCRIPTION | 21 +-- MD5 | 40 ++--- NAMESPACE | 3 NEWS.md | 15 ++ R/Anova.mp.R | 113 +++++++++++++--- R/glm.mp.R | 33 +++- R/glm.mp.con.R | 44 ++++-- R/glmer.mp.R | 33 +++- R/glmer.mp.con.R | 43 ++++-- inst/WORDLIST | 1 inst/doc/multpois.html | 4 man/Anova.mp.Rd | 16 +- man/glm.mp.Rd | 6 man/glm.mp.con.Rd | 7 - man/glmer.mp.Rd | 6 man/glmer.mp.con.Rd | 7 - tests/testthat/test-Anova.mp.R | 254 ++++++++++++++++++++++++++++++++++--- tests/testthat/test-glm.mp.R | 43 +++++- tests/testthat/test-glm.mp.con.R | 27 ++- tests/testthat/test-glmer.mp.R | 35 ++++- tests/testthat/test-glmer.mp.con.R | 23 ++- 21 files changed, 637 insertions(+), 137 deletions(-)
Title: Most Probable Number and Other Microbial Enumeration Techniques
Description: Calculates the Most Probable Number (MPN) to quantify the
concentration (density) of microbes in serial dilutions of a laboratory
sample (described in Jarvis, 2010 <doi:10.1111/j.1365-2672.2010.04792.x>).
Also calculates the Aerobic Plate Count (APC) for similar microbial
enumeration experiments.
Author: Martine Ferguson [aut] ,
John Ihrie [cre, aut]
Maintainer: John Ihrie <John.Ihrie@fda.hhs.gov>
Diff between MPN versions 0.3.0 dated 2019-03-20 and 0.4.0 dated 2024-10-22
DESCRIPTION | 16 MD5 | 41 +- NEWS.md | 12 R/MPN.R | 17 - R/checkInputs.R | 16 R/f_apc.R | 21 - R/f_mpn.R | 47 +- R/helpers_APC.R | 12 R/helpers_MPN.R | 17 - build/vignette.rds |binary inst/doc/a_mpn-vignette.R | 16 inst/doc/a_mpn-vignette.Rmd | 38 -- inst/doc/a_mpn-vignette.html | 710 +++++++++++++++++++++++++++++++------------ inst/doc/b_apc-vignette.R | 12 inst/doc/b_apc-vignette.Rmd | 3 inst/doc/b_apc-vignette.html | 562 +++++++++++++++++++++++++--------- man/MPN-package.Rd |only man/apc.Rd | 24 - man/mpn.Rd | 47 +- tests/testthat/test_mpn.R | 13 vignettes/a_mpn-vignette.Rmd | 38 -- vignettes/b_apc-vignette.Rmd | 3 22 files changed, 1136 insertions(+), 529 deletions(-)
Title: Port of 'Dparser' Package
Description: A Scannerless GLR parser/parser generator. Note that GLR standing for "generalized LR", where L stands for "left-to-right" and
R stands for "rightmost (derivation)". For more information see <https://en.wikipedia.org/wiki/GLR_parser>. This parser is based on the Tomita
(1987) algorithm. (Paper can be found at <https://aclanthology.org/P84-1073.pdf>).
The original 'dparser' package documentation can be found at <https://dparser.sourceforge.net/>. This allows you to add mini-languages to R (like
rxode2's ODE mini-language Wang, Hallow, and James 2015 <DOI:10.1002/psp4.12052>) or to parse other languages like 'NONMEM' to automatically translate
them to R code. To use this in your code, add a LinkingTo dparser in your DESCRIPTION file and instead of using #include <dparse.h> use
#include <dparser.h>. This also provides a R-based port of the make_dparser <https://dparser.sourceforge.net/d/make_dparser.cat> command called
mkdparser(). Addition [...truncated...]
Author: Matthew Fidler [aut, cre],
John Plevyak [aut, cph]
Maintainer: Matthew Fidler <matthew.fidler@gmail.com>
Diff between dparser versions 1.3.1-12 dated 2024-09-17 and 1.3.1-13 dated 2024-10-22
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 5 +++++ src/Makevars | 4 +--- src/rdparse.c | 9 ++++----- 5 files changed, 17 insertions(+), 15 deletions(-)
Title: The Tidymodels Extension for Time Series Modeling
Description: The time series forecasting framework for use with the 'tidymodels' ecosystem.
Models include ARIMA, Exponential Smoothing, and additional time series models
from the 'forecast' and 'prophet' packages. Refer to "Forecasting Principles & Practice, Second edition"
(<https://otexts.com/fpp2/>).
Refer to "Prophet: forecasting at scale"
(<https://research.facebook.com/blog/2017/02/prophet-forecasting-at-scale/>.).
Author: Matt Dancho [aut, cre],
Business Science [cph]
Maintainer: Matt Dancho <mdancho@business-science.io>
Diff between modeltime versions 1.3.0 dated 2024-07-29 and 1.3.1 dated 2024-10-22
DESCRIPTION | 8 - MD5 | 34 ++--- NAMESPACE | 2 NEWS.md | 9 + R/dials-adam_params.R | 47 ++++++++ R/dials-arima_params.R | 2 R/parsnip-adam.R | 57 +++++---- R/parsnip-arima_boost.R | 11 - R/parsnip-prophet_boost.R | 3 R/utils-control-par.R | 57 +++++++++ inst/doc/getting-started-with-modeltime.html | 149 ++++++++++++-------------- man/adam_params.Rd | 37 ++++++ man/arima_boost.Rd | 11 - man/arima_params.Rd | 2 man/parallel_start.Rd | 11 + man/prophet_boost.Rd | 3 tests/testthat/test-algo-adam_reg-Adam.R | 12 +- tests/testthat/test-algo-adam_reg-auto_adam.R | 12 +- 18 files changed, 311 insertions(+), 156 deletions(-)
Title: Clustering and Visualizing Distance Matrices
Description: Defines the classes used to explore, cluster and
visualize distance matrices, especially those arising from binary
data. See Abrams and colleagues, 2021, <doi:10.1093/bioinformatics/btab037>.
Author: Kevin R. Coombes [aut, cre],
Caitlin E. Coombes [aut]
Maintainer: Kevin R. Coombes <krc@silicovore.com>
Diff between Mercator versions 1.1.4 dated 2024-04-28 and 1.1.5 dated 2024-10-22
DESCRIPTION | 20 + MD5 | 26 +- NAMESPACE | 3 build/vignette.rds |binary data/CML1000.rda |binary data/CML500.rda |binary data/fakedata.rda |binary data/lgfFeatures.rda |binary inst/doc/mercVis.html | 422 ++++++++++++++++++++--------------- inst/doc/mercator.html | 590 ++++++++++++++++++++++++++++++------------------- inst/doc/umap-som.html | 383 ++++++++++++++++++------------- man/Mercator-class.Rd | 10 man/coloring.Rd | 5 man/threshLGF.Rd | 13 - 14 files changed, 880 insertions(+), 592 deletions(-)
Title: Class-Agnostic Time Series
Description: Time series toolkit with identical behavior for all
time series classes: 'ts','xts', 'data.frame', 'data.table', 'tibble', 'zoo',
'timeSeries', 'tsibble', 'tis' or 'irts'. Also converts reliably between these classes.
Author: Christoph Sax [aut, cre] ,
Cathy Chamberlin [rev],
Nunes Matt [rev]
Maintainer: Christoph Sax <christoph.sax@gmail.com>
Diff between tsbox versions 0.4.1 dated 2023-05-08 and 0.4.2 dated 2024-10-22
DESCRIPTION | 8 - MD5 | 20 +-- NEWS.md | 9 + R/convert_exact.R | 6 - R/ts_ggplot.R | 19 +-- README.md | 2 build/vignette.rds |binary inst/doc/convert.html | 76 ++++++------- inst/doc/ts-functions.html | 64 +++++------ inst/doc/tsbox.html | 250 ++++++++++++++++++++++----------------------- man/tsbox-package.Rd | 9 + 11 files changed, 244 insertions(+), 219 deletions(-)
Title: Bayesian Variable Selection and Model Choice for Generalized
Additive Mixed Models
Description: Bayesian variable selection, model choice, and regularized
estimation for (spatial) generalized additive mixed regression models
via stochastic search variable selection with spike-and-slab priors.
Author: Fabian Scheipl [aut, cre],
Bettina Gruen [ctb]
Maintainer: Fabian Scheipl <fabian.scheipl@stat.uni-muenchen.de>
Diff between spikeSlabGAM versions 1.1-19 dated 2022-06-10 and 1.1-20 dated 2024-10-22
DESCRIPTION | 8 - MD5 | 18 ++-- build/vignette.rds |binary inst/CITATION | 8 - inst/doc/UsingSpikeSlabGAM-wrapper.pdf |binary src/sampler.c | 114 ++++++++++++++-------------- src/updaters.h | 52 ++++++------ src/utils.h | 29 +++---- vignettes/UsingSpikeSlabGAM-precompiled.pdf |binary vignettes/precompile-vignette.R | 3 10 files changed, 116 insertions(+), 116 deletions(-)
Title: A Soil Survey Toolkit
Description: Miscellaneous soil data management, summary, visualization, and conversion utilities to support soil survey.
Author: Dylan Beaudette [cre, aut],
Jay Skovlin [aut],
Stephen Roecker [aut],
Andrew Brown [aut],
USDA-NRCS Soil Survey Staff [ctb]
Maintainer: Dylan Beaudette <dylan.beaudette@usda.gov>
Diff between sharpshootR versions 2.3.1 dated 2024-05-29 and 2.3.2 dated 2024-10-22
DESCRIPTION | 10 +++---- MD5 | 38 ++++++++++++++--------------- NEWS.md | 4 +++ R/FFD.R | 9 +++++- R/PCP_plot.R | 2 - R/component.adj.matrix.R | 2 - R/plotGeomorphCrossSection.R | 38 +++++++++++++++++++++++++++-- R/plotSoilRelationGraph.R | 2 - R/plotWB_lines.R | 2 - R/prepare_SSURGO_hydro_data.R | 20 ++++++++------- build/vignette.rds |binary data/OSDexamples.rda |binary man/FFD.Rd | 2 - man/OSDexamples.Rd | 2 - man/PCP_plot.Rd | 2 - man/component.adj.matrix.Rd | 2 - man/plotSoilRelationGraph.Rd | 2 - man/prepare_SSURGO_hydro_data.Rd | 1 tests/testthat/Rplots.pdf |binary tests/testthat/test-component.adj.matrix.R | 2 + 20 files changed, 94 insertions(+), 46 deletions(-)
Title: B Cell Receptor Phylogenetics Toolkit
Description: Provides a set of functions for inferring, visualizing, and analyzing B cell phylogenetic trees.
Provides methods to 1) reconstruct unmutated ancestral sequences,
2) build B cell phylogenetic trees using multiple methods,
3) visualize trees with metadata at the tips,
4) reconstruct intermediate sequences,
5) detect biased ancestor-descendant relationships among metadata types
Workflow examples available at documentation site (see URL).
Citations:
Hoehn et al (2022) <doi:10.1371/journal.pcbi.1009885>,
Hoehn et al (2021) <doi:10.1101/2021.01.06.425648>.
Author: Kenneth Hoehn [aut, cre],
Cole Jensen [ctb],
Susanna Marquez [ctb],
Jason Vander Heiden [ctb],
Steven Kleinstein [aut, cph]
Maintainer: Kenneth Hoehn <kenneth.b.hoehn@dartmouth.edu>
Diff between dowser versions 2.2.0 dated 2024-05-09 and 2.3 dated 2024-10-22
DESCRIPTION | 16 MD5 | 60 - NAMESPACE | 5 NEWS.md | 18 R/Clones.R | 100 +- R/Dowser.R | 4 R/Germlines.R | 59 + R/Plotting.R | 16 R/Statistics.R | 1339 ++++++++++++++--------------- R/TreeFunctions.R | 473 +++++++--- inst/CITATION | 13 inst/doc/Building-Trees-Vignette.pdf |binary inst/doc/Discrete-Trait-Vignette.pdf |binary inst/doc/Germlines-Vignette.pdf |binary inst/doc/Measurable-Evolution.pdf |binary inst/doc/Plotting-Trees-Vignette.pdf |binary inst/doc/Quickstart-Vignette.pdf |binary inst/doc/Resolve-Light-Chains-Vignette.pdf |binary inst/doc/Sequences-Vignette.R | 11 inst/doc/Sequences-Vignette.Rmd | 20 inst/doc/Sequences-Vignette.pdf |binary man/buildRAxML.Rd | 6 man/correlationTest.Rd | 2 man/createGermlines.Rd | 6 man/dfToFasta.Rd |only man/dowser.Rd | 25 man/exportTrees.Rd |only man/getAllSeqs.Rd |only man/getTrees.Rd | 5 man/plotTrees.Rd | 5 man/resolveLightChains.Rd | 5 man/writeCloneSequences.Rd |only vignettes/Sequences-Vignette.Rmd | 20 33 files changed, 1332 insertions(+), 876 deletions(-)
Title: Thematic Cartography
Description: Create and integrate thematic maps in your workflow. This package
helps to design various cartographic representations such as proportional
symbols, choropleth or typology maps. It also offers several functions to
display layout elements that improve the graphic presentation of maps
(e.g. scale bar, north arrow, title, labels). 'mapsf' maps 'sf' objects on
'base' graphics.
Author: Timothee Giraud [cre, aut] ,
Hugues Pecout [ctb] ,
Ronan Ysebaert [ctb] ,
Ian Fellows [cph] ,
Jim Lemon [cph]
Maintainer: Timothee Giraud <timothee.giraud@cnrs.fr>
Diff between mapsf versions 0.11.0 dated 2024-07-29 and 0.12.0 dated 2024-10-22
DESCRIPTION | 9 - MD5 | 68 ++++++----- NAMESPACE | 2 NEWS.md | 16 ++ R/mf_annotation.R | 4 R/mf_arrow.R | 196 ++++++++++++++++++++----------- R/mf_credits.R | 2 R/mf_get_borders.R |only R/mf_get_breaks.R | 239 +++++++++++++++++++++++---------------- R/mf_get_pencil.R |only R/mf_grad.R | 2 R/mf_init.R | 1 R/mf_inset.R | 9 - R/mf_legend.R | 17 +- R/mf_map.R | 6 R/mf_map_utils.R | 18 ++ R/mf_scale.R | 3 R/mf_title.R | 8 - R/package.R | 3 inst/doc/mapsf.html | 20 +-- inst/tinytest/test_arrow.R | 4 inst/tinytest/test_background.R | 2 inst/tinytest/test_breaks.R | 5 inst/tinytest/test_get_borders.R |only inst/tinytest/test_get_pencil.R |only inst/tinytest/test_inset.R | 1 inst/tinytest/test_map_c.R | 2 man/figures/example1-1.png |binary man/figures/mtq.png |binary man/mapsf.Rd | 3 man/mf_arrow.Rd | 17 ++ man/mf_get_borders.Rd |only man/mf_get_breaks.Rd | 37 ++++-- man/mf_get_pencil.Rd |only man/mf_init.Rd | 1 man/mf_inset_on.Rd | 3 man/mf_legend.Rd | 18 +- man/mf_map.Rd | 5 38 files changed, 446 insertions(+), 275 deletions(-)
Title: Allelic Series Test
Description: Implementation of gene-level rare variant association tests targeting allelic series: genes where increasingly deleterious mutations have increasingly large phenotypic effects. The COding-variant Allelic Series Test (COAST) operates on the benign missense variants (BMVs), deleterious missense variants (DMVs), and protein truncating variants (PTVs) within a gene. COAST uses a set of adjustable weights that tailor the test towards rejecting the null hypothesis for genes where the average magnitude of effect increases monotonically from BMVs to DMVs to PTVs. See McCaw ZR, O’Dushlaine C, Somineni H, Bereket M, Klein C, Karaletsos T, Casale FP, Koller D, Soare TW. (2023) "An allelic series rare variant association test for candidate gene discovery" <doi:10.1016/j.ajhg.2023.07.001>.
Author: Zachary McCaw [aut, cre] ,
Christoph Klein [ctb] ,
Jianhui Gao [ctb] ,
insitro [cph]
Maintainer: Zachary McCaw <zmccaw@insitro.com>
Diff between AllelicSeries versions 0.0.4.1 dated 2023-10-06 and 0.1.0.2 dated 2024-10-22
DESCRIPTION | 20 +- MD5 | 80 ++++++--- NAMESPACE | 14 + NEWS.md |only R/RcppExports.R | 102 ++++++++++++ R/allelic_series_sumstats.R |only R/allelic_series_test.R | 107 ++++++++++--- R/class.R |only R/generate_data.R | 17 +- R/generate_sumstats.R |only R/input_checks.R | 95 +++++++++++ R/skat.R |only R/utilities.R | 23 ++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/coast.R | 27 ++- inst/doc/coast.Rmd | 24 ++ inst/doc/coast.html | 210 +++++++++++++++----------- man/ASBT.Rd | 7 man/ASBTSS.Rd |only man/ASKAT.Rd | 3 man/ASKATSS.Rd |only man/Aggregator.Rd | 5 man/AllelicSeries-package.Rd | 3 man/BaselineSS.Rd |only man/COAST-class.Rd |only man/COAST-method.Rd |only man/COAST.Rd | 10 + man/COASTSS.Rd |only man/CalcSumstats.Rd |only man/CheckInputsSS.Rd |only man/CorCpp.Rd |only man/Counts.Rd |only man/DGP.Rd | 9 - man/DfOrNULL-class.Rd |only man/GenomicControl.Rd |only man/OLS.Rd | 9 - man/SumCountSS.Rd |only man/isPD.Rd |only man/print.COAST.Rd |only src/RcppExports.cpp | 122 +++++++++++++++ src/counting.cpp |only src/lm.cpp | 16 + src/score.cpp | 2 src/skat.cpp |only src/sumstats.cpp |only tests/testthat/test-allelic_series.R | 80 ++++++++- tests/testthat/test-allelic_series_sumstats.R |only tests/testthat/test-binary.R | 11 - tests/testthat/test-counts.R |only tests/testthat/test-data_generation.R | 36 ++++ tests/testthat/test-score_test.R | 8 tests/testthat/test-utils.R |only vignettes/coast.Rmd | 24 ++ 54 files changed, 876 insertions(+), 188 deletions(-)
Title: A Tool for Automating the Statistical Disclosure Control of
Research Outputs
Description: Assists researchers and output checkers by distinguishing between research output that is safe to publish, output that requires further analysis, and output that cannot be published because of substantial disclosure risk. A paper about the tool was presented at the UNECE Expert Meeting on Statistical Data Confidentiality 2023; see <https://uwe-repository.worktribe.com/output/11060964>.
Author: Jim Smith [cre, ctb] ,
Maha Albashir [aut, ctb],
Richard John Preen [aut, ctb]
Maintainer: Jim Smith <James.Smith@uwe.ac.uk>
Diff between acro versions 0.1.2 dated 2024-08-19 and 0.1.3 dated 2024-10-22
DESCRIPTION | 12 ++++---- MD5 | 10 +++--- NEWS.md | 4 ++ R/create_virtualenv.R | 6 ++-- README.md | 66 +++++++++++++++++++++++++++------------------- tests/testthat/Rplots.pdf |binary 6 files changed, 57 insertions(+), 41 deletions(-)
Title: Download Flight and Airport Data from Brazil
Description: Download flight and airport data from Brazil’s Civil Aviation Agency
(ANAC) <https://www.gov.br/anac/pt-br>. The data covers detailed
information on aircraft, airports, and airport operations registered
with ANAC. It also includes data on airfares, all international
flights to and from Brazil, and domestic flights within the country.
Author: Rafael H. M. Pereira [aut, cre]
,
Ipea - Institute for Applied Economic Research [cph, fnd]
Maintainer: Rafael H. M. Pereira <rafa.pereira.br@gmail.com>
Diff between flightsbr versions 0.5.0 dated 2024-09-18 and 1.0.0 dated 2024-10-22
DESCRIPTION | 16 +- MD5 | 81 +++++------ NAMESPACE | 2 NEWS.md | 21 ++ R/flightsbr.R | 5 R/latest_flights_date.R | 29 +++- R/read_aircrafts.R | 10 + R/read_airfares.R | 96 +++---------- R/read_airport_movements.R | 9 + R/read_airports.R | 38 ++--- R/read_flights.R | 11 + R/utils.R | 80 ++++++++++- R/utils_aircrafts.R | 22 +-- R/utils_airfares.R | 148 ++++++++++++++------- R/utils_airport_movement.R | 14 - R/utils_flightst.R | 24 +-- README.md | 17 +- inst/doc/airports.R | 15 +- inst/doc/airports.Rmd | 15 +- inst/doc/airports.html | 35 +++- inst/doc/flights.R | 32 ++-- inst/doc/flights.Rmd | 36 ++--- inst/doc/flights.html | 91 ++++++------ inst/doc/intro_flightsbr.R | 10 - inst/doc/intro_flightsbr.Rmd | 21 +- inst/doc/intro_flightsbr.html | 20 +- man/altitude_to_numeric.Rd |only man/check_input_date_format.Rd |only man/download_airfares_data.Rd | 21 +- man/get_airfares_url.Rd | 9 - man/latest_airfares_date.Rd |only man/latest_flights_date.Rd | 4 man/read_airfares.Rd | 7 man/read_airports.Rd | 2 tests/testthat/test_get_airfares_dates_available.R | 50 +++---- tests/testthat/test_read_aircrafts.R | 5 tests/testthat/test_read_airfares.R | 137 ++++++++++--------- tests/testthat/test_read_airport_movements.R | 5 tests/testthat/test_read_airports.R | 1 tests/testthat/test_read_flights.R | 7 vignettes/airports.Rmd | 15 +- vignettes/flights.Rmd | 36 ++--- vignettes/intro_flightsbr.Rmd | 21 +- 43 files changed, 744 insertions(+), 474 deletions(-)
Title: Linguistic Fuzzy Logic
Description: Various algorithms related to linguistic fuzzy logic: mining for linguistic fuzzy association
rules, composition of fuzzy relations, performing perception-based logical deduction (PbLD),
and forecasting time-series using fuzzy rule-based ensemble (FRBE). The package also contains basic
fuzzy-related algebraic functions capable of handling missing values in different styles (Bochvar,
Sobocinski, Kleene etc.), computation of Sugeno integrals and fuzzy transform.
Author: Michal Burda [aut, cre]
Maintainer: Michal Burda <michal.burda@osu.cz>
Diff between lfl versions 2.2.0 dated 2022-09-08 and 2.2.1 dated 2024-10-22
lfl-2.2.0/lfl/man/lfl.Rd |only lfl-2.2.1/lfl/DESCRIPTION | 13 ++-- lfl-2.2.1/lfl/MD5 | 42 +++++++------- lfl-2.2.1/lfl/NAMESPACE | 1 lfl-2.2.1/lfl/NEWS.md | 10 +++ lfl-2.2.1/lfl/R/defuzz.R | 82 ++++++++++++++++++++--------- lfl-2.2.1/lfl/R/fcut.R | 1 lfl-2.2.1/lfl/R/ft.R | 2 lfl-2.2.1/lfl/R/lfl-package.R | 6 +- lfl-2.2.1/lfl/R/mult.R | 2 lfl-2.2.1/lfl/R/quantifier.R | 16 ++--- lfl-2.2.1/lfl/build/vignette.rds |binary lfl-2.2.1/lfl/inst/CITATION | 4 - lfl-2.2.1/lfl/man/defuzz.Rd | 14 +++- lfl-2.2.1/lfl/man/ft.Rd | 2 lfl-2.2.1/lfl/man/horizon.Rd | 4 - lfl-2.2.1/lfl/man/lcut.Rd | 8 +- lfl-2.2.1/lfl/man/lfl-package.Rd |only lfl-2.2.1/lfl/man/lingexpr.Rd | 4 - lfl-2.2.1/lfl/man/quantifier.Rd | 2 lfl-2.2.1/lfl/src/Makevars.in | 3 - lfl-2.2.1/lfl/src/Makevars.win | 3 - lfl-2.2.1/lfl/tests/testthat/test-defuzz.R | 6 ++ 23 files changed, 137 insertions(+), 88 deletions(-)
Title: Sound Synthesis and Acoustic Analysis
Description: Performs parametric synthesis of sounds with harmonic and noise
components such as animal vocalizations or human voice. Also offers tools
for audio manipulation and acoustic analysis, including pitch tracking,
spectral analysis, audio segmentation, pitch and formant shifting, etc.
Includes four interactive web apps for synthesizing and annotating audio,
manually correcting pitch contours, and measuring formant frequencies.
Reference: Anikin (2019) <doi:10.3758/s13428-018-1095-7>.
Author: Andrey Anikin [aut, cre]
Maintainer: Andrey Anikin <andrey.anikin@cogsci.se>
Diff between soundgen versions 2.7.0 dated 2024-09-11 and 2.7.1 dated 2024-10-22
soundgen-2.7.0/soundgen/man/getLoudnessPerFrame.Rd |only soundgen-2.7.0/soundgen/man/getVocalFry.Rd |only soundgen-2.7.0/soundgen/man/getVocalFry_per_epoch.Rd |only soundgen-2.7.0/soundgen/man/isCentral.localMax.Rd |only soundgen-2.7.0/soundgen/man/subhToHarm.Rd |only soundgen-2.7.1/soundgen/DESCRIPTION | 8 soundgen-2.7.1/soundgen/MD5 | 251 ++--- soundgen-2.7.1/soundgen/NAMESPACE | 2 soundgen-2.7.1/soundgen/NEWS | 15 soundgen-2.7.1/soundgen/R/SSM.R | 220 ++--- soundgen-2.7.1/soundgen/R/am.R | 214 ++++ soundgen-2.7.1/soundgen/R/amplitude.R | 282 +----- soundgen-2.7.1/soundgen/R/analyze.R | 95 +- soundgen-2.7.1/soundgen/R/analyze_utilities.R | 298 ------ soundgen-2.7.1/soundgen/R/audSpec.R | 30 soundgen-2.7.1/soundgen/R/compareSounds.R | 4 soundgen-2.7.1/soundgen/R/detectNLP.R | 28 soundgen-2.7.1/soundgen/R/duration.R | 22 soundgen-2.7.1/soundgen/R/filters.R | 8 soundgen-2.7.1/soundgen/R/formants.R | 57 - soundgen-2.7.1/soundgen/R/formants_utilities.R | 122 ++ soundgen-2.7.1/soundgen/R/invertModulSpec.R | 2 soundgen-2.7.1/soundgen/R/invertSpectrogram.R | 29 soundgen-2.7.1/soundgen/R/io.R | 43 - soundgen-2.7.1/soundgen/R/loudness.R | 6 soundgen-2.7.1/soundgen/R/loudness_utilities.R | 58 - soundgen-2.7.1/soundgen/R/matchPars.R | 107 -- soundgen-2.7.1/soundgen/R/math.R | 557 ++++++++----- soundgen-2.7.1/soundgen/R/modulationSpectrum.R | 60 + soundgen-2.7.1/soundgen/R/modulationSpectrum_utilities.R | 89 +- soundgen-2.7.1/soundgen/R/morph.R | 22 soundgen-2.7.1/soundgen/R/morph_utilities.R | 23 soundgen-2.7.1/soundgen/R/naiveBayes.R | 4 soundgen-2.7.1/soundgen/R/noiseRemoval.R | 5 soundgen-2.7.1/soundgen/R/optimize.R | 9 soundgen-2.7.1/soundgen/R/phasegram.R | 86 +- soundgen-2.7.1/soundgen/R/pitchDescriptives.R | 22 soundgen-2.7.1/soundgen/R/pitchTrackers.R | 128 +- soundgen-2.7.1/soundgen/R/pitch_postprocessing.R | 213 ++-- soundgen-2.7.1/soundgen/R/postprocessing.R | 32 soundgen-2.7.1/soundgen/R/prosody.R | 6 soundgen-2.7.1/soundgen/R/resample.R | 23 soundgen-2.7.1/soundgen/R/rolloff.R | 28 soundgen-2.7.1/soundgen/R/segment.R | 51 - soundgen-2.7.1/soundgen/R/segment_utilities.R | 10 soundgen-2.7.1/soundgen/R/shiftFormants.R | 2 soundgen-2.7.1/soundgen/R/shiftPitch.R | 31 soundgen-2.7.1/soundgen/R/smoothContours.R | 102 +- soundgen-2.7.1/soundgen/R/soundgen.R | 119 +- soundgen-2.7.1/soundgen/R/soundgen_utilities.R | 229 +++-- soundgen-2.7.1/soundgen/R/source.R | 99 +- soundgen-2.7.1/soundgen/R/spectralDescr.R | 379 +++++++- soundgen-2.7.1/soundgen/R/spectrogram.R | 518 ++++++------ soundgen-2.7.1/soundgen/R/subharmonics.R | 72 - soundgen-2.7.1/soundgen/R/surprisal.R | 25 soundgen-2.7.1/soundgen/R/timeStretch.R | 2 soundgen-2.7.1/soundgen/R/vtl.R | 25 soundgen-2.7.1/soundgen/data/detectNLP_training_nonv.rda |binary soundgen-2.7.1/soundgen/data/detectNLP_training_synth.rda |binary soundgen-2.7.1/soundgen/inst/shiny/annotation_app/server.R | 2 soundgen-2.7.1/soundgen/inst/shiny/formant_app/server.R | 2 soundgen-2.7.1/soundgen/inst/shiny/pitch_app/server.R | 2 soundgen-2.7.1/soundgen/inst/shiny/soundgen_main/server.R | 16 soundgen-2.7.1/soundgen/man/Mode.Rd | 3 soundgen-2.7.1/soundgen/man/addAM.Rd | 2 soundgen-2.7.1/soundgen/man/addFormants.Rd | 12 soundgen-2.7.1/soundgen/man/addPitchCands.Rd | 19 soundgen-2.7.1/soundgen/man/addSubh.Rd |only soundgen-2.7.1/soundgen/man/addSubh_per_epoch.Rd |only soundgen-2.7.1/soundgen/man/addVectors.Rd | 4 soundgen-2.7.1/soundgen/man/analyze.Rd | 8 soundgen-2.7.1/soundgen/man/analyzeFrame.Rd | 6 soundgen-2.7.1/soundgen/man/audSpectrogram.Rd | 20 soundgen-2.7.1/soundgen/man/bandpass.Rd | 6 soundgen-2.7.1/soundgen/man/clumper.Rd | 10 soundgen-2.7.1/soundgen/man/compareSounds.Rd | 2 soundgen-2.7.1/soundgen/man/convertStringToFormants.Rd | 8 soundgen-2.7.1/soundgen/man/detectNLP.Rd | 21 soundgen-2.7.1/soundgen/man/divideIntoSyllables.Rd | 12 soundgen-2.7.1/soundgen/man/dot-addAM.Rd | 2 soundgen-2.7.1/soundgen/man/dot-addFormants.Rd | 14 soundgen-2.7.1/soundgen/man/dot-analyze.Rd | 2 soundgen-2.7.1/soundgen/man/dot-audSpectrogram.Rd | 10 soundgen-2.7.1/soundgen/man/dot-getSurprisal.Rd | 6 soundgen-2.7.1/soundgen/man/dot-spectrogram.Rd | 14 soundgen-2.7.1/soundgen/man/drawFreqAxis.Rd |only soundgen-2.7.1/soundgen/man/filled.contour.mod.Rd | 3 soundgen-2.7.1/soundgen/man/findElbow.Rd | 2 soundgen-2.7.1/soundgen/man/findInflections.Rd | 3 soundgen-2.7.1/soundgen/man/findPeaks.Rd |only soundgen-2.7.1/soundgen/man/findZeroCrossing.Rd | 2 soundgen-2.7.1/soundgen/man/flatEnv.Rd | 6 soundgen-2.7.1/soundgen/man/getAM.Rd | 5 soundgen-2.7.1/soundgen/man/getFeatureFlux.Rd | 2 soundgen-2.7.1/soundgen/man/getFrameBank.Rd | 1 soundgen-2.7.1/soundgen/man/getHNR.Rd | 25 soundgen-2.7.1/soundgen/man/getPeakFreq.Rd | 13 soundgen-2.7.1/soundgen/man/getSHR.Rd |only soundgen-2.7.1/soundgen/man/getSigmoid.Rd | 12 soundgen-2.7.1/soundgen/man/getSmoothSpectrum.Rd | 5 soundgen-2.7.1/soundgen/man/getSpectralFlux.Rd | 2 soundgen-2.7.1/soundgen/man/getSurprisal.Rd | 6 soundgen-2.7.1/soundgen/man/harmHeight.Rd | 1 soundgen-2.7.1/soundgen/man/hz2mel.Rd | 2 soundgen-2.7.1/soundgen/man/identifyAndPlay.Rd | 15 soundgen-2.7.1/soundgen/man/interpolMatrix.Rd | 2 soundgen-2.7.1/soundgen/man/log01.Rd | 3 soundgen-2.7.1/soundgen/man/matchLengths.Rd | 3 soundgen-2.7.1/soundgen/man/medianSmoother.Rd | 11 soundgen-2.7.1/soundgen/man/modulationSpectrum.Rd | 7 soundgen-2.7.1/soundgen/man/modulationSpectrumFragment.Rd | 1 soundgen-2.7.1/soundgen/man/morph.Rd | 2 soundgen-2.7.1/soundgen/man/msToSpec.Rd | 8 soundgen-2.7.1/soundgen/man/na.trim.Rd |only soundgen-2.7.1/soundgen/man/normalizeFolder.Rd | 8 soundgen-2.7.1/soundgen/man/phasePropagate.Rd | 2 soundgen-2.7.1/soundgen/man/plotSpec.Rd | 6 soundgen-2.7.1/soundgen/man/plotUnrasterized.Rd |only soundgen-2.7.1/soundgen/man/prosody.Rd | 2 soundgen-2.7.1/soundgen/man/reportTime.Rd | 2 soundgen-2.7.1/soundgen/man/resample.Rd | 18 soundgen-2.7.1/soundgen/man/rnorm_truncated.Rd | 7 soundgen-2.7.1/soundgen/man/rnorm_truncated2.Rd |only soundgen-2.7.1/soundgen/man/sampleModif.Rd | 2 soundgen-2.7.1/soundgen/man/segment.Rd | 2 soundgen-2.7.1/soundgen/man/semitonesToHz.Rd | 3 soundgen-2.7.1/soundgen/man/soundgen.Rd | 23 soundgen-2.7.1/soundgen/man/specToMS.Rd | 7 soundgen-2.7.1/soundgen/man/specToMS_1D.Rd | 16 soundgen-2.7.1/soundgen/man/spectrogram.Rd | 34 soundgen-2.7.1/soundgen/man/switchColorTheme.Rd | 10 soundgen-2.7.1/soundgen/man/wiggleAnchors.Rd | 4 soundgen-2.7.1/soundgen/man/wigglePars.Rd | 2 133 files changed, 2926 insertions(+), 2439 deletions(-)
More information about MonotoneHazardRatio at CRAN
Permanent link
Title: Download and Display Map Tiles
Description: To create maps from tiles, 'maptiles' downloads, composes and
displays tiles from a large number of providers (e.g. 'OpenStreetMap',
'Stadia', 'Esri', 'CARTO', or 'Thunderforest').
Author: Timothee Giraud [cre, aut] ,
Diego Hernangomez [ctb] ,
Robert J. Hijmans [ctb] ,
Hugh A. Graham [ctb]
Maintainer: Timothee Giraud <timothee.giraud@cnrs.fr>
Diff between maptiles versions 0.7.0 dated 2024-01-11 and 0.8.0 dated 2024-10-22
DESCRIPTION | 8 ++-- MD5 | 34 +++++++++-------- NAMESPACE | 2 - NEWS.md | 11 +++++ R/create_provider.R | 15 ++++--- R/get_providers.R |only R/get_tiles.R | 33 +++++++++------- R/plot_tiles.R | 12 ++++-- R/providers.R | 43 ++++++++++----------- R/utils.R | 76 +++++++++++++++++++++----------------- README.md | 18 +++++---- inst/tinytest/test_maptiles.R | 19 +-------- man/create_provider.Rd | 15 ++++--- man/figures/README-example-1.png |binary man/figures/README-example2-1.png |binary man/figures/README-front.png |binary man/get_providers.Rd |only man/get_tiles.Rd | 12 +++--- man/maptiles.Rd | 2 - 19 files changed, 158 insertions(+), 142 deletions(-)
More information about cpp11tesseract at CRAN
Permanent link
Title: Small Count Rounding of Tabular Data
Description: A statistical disclosure control tool to protect frequency tables in cases where small values are sensitive. The function PLSrounding() performs small count rounding of necessary inner cells so that all small frequencies of cross-classifications to be published (publishable cells) are rounded. This is equivalent to changing micro data since frequencies of unique combinations are changed. Thus, additivity and consistency are guaranteed. The methodology is described in Langsrud and Heldal (2018) <https://www.researchgate.net/publication/327768398_An_Algorithm_for_Small_Count_Rounding_of_Tabular_Data>.
Author: Oeyvind Langsrud [aut, cre],
Johan Heldal [aut]
Maintainer: Oeyvind Langsrud <oyl@ssb.no>
Diff between SmallCountRounding versions 1.0.5 dated 2024-09-05 and 1.0.8 dated 2024-10-22
DESCRIPTION | 13 +- MD5 | 25 ++-- NAMESPACE | 6 + NEWS.md | 32 +++++ R/Extend0fromModelMatrixInput.R |only R/PLSrounding.R | 126 +++++++++++++++++++---- R/PLSroundingFits.R | 89 +++++++++++----- R/RoundViaDummy.R | 99 ++++++++++++++++-- inst/doc/Introduction_to_SmallCountRounding.html | 4 man/FormulaSelection.PLSrounded.Rd |only man/PLSrounding.Rd | 40 +++++++ man/PLSroundingFits.Rd | 27 ++++ man/RoundViaDummy.Rd | 27 ++++ tests/testthat/test-PLSrounding.R | 36 ++++++ tests/testthat/test-PLSroundingFits.R |only 15 files changed, 446 insertions(+), 78 deletions(-)
More information about SmallCountRounding at CRAN
Permanent link
Title: Raster Randomization for Null Hypothesis Testing
Description: Randomization of presence/absence species distribution raster
data with or without including spatial structure for calculating
standardized effect sizes and testing null hypothesis. The
randomization algorithms are based on classical algorithms for
matrices (Gotelli 2000, <doi:10.2307/177478>) implemented for raster
data.
Author: Neander Marcel Heming [aut, cre, cph]
,
Flavio M. M. Mota [aut] ,
Gabriela Alves-Ferreira [aut]
Maintainer: Neander Marcel Heming <neanderh@yahoo.com.br>
Diff between SESraster versions 0.7.0 dated 2023-08-10 and 0.7.1 dated 2024-10-22
DESCRIPTION | 8 ++-- MD5 | 22 ++++++------ NEWS.md | 11 +++++- R/SESraster.R | 26 ++++++++++---- inst/doc/SES.R | 20 +++++------ inst/doc/SES.html | 59 +++++++++++++++++++-------------- inst/doc/null-models.R | 2 - inst/doc/null-models.html | 66 +++++++++++++++++++------------------- inst/doc/spatial-null-models.R | 36 ++++++++++---------- inst/doc/spatial-null-models.html | 30 ++++++++--------- man/SESraster.Rd | 3 + tests/testthat/test-SESraster.R | 24 ++++++------- 12 files changed, 167 insertions(+), 140 deletions(-)
Title: Quantile Regression
Description: Estimation and inference methods for models for conditional quantile functions:
Linear and nonlinear parametric and non-parametric (total variation penalized) models
for conditional quantiles of a univariate response and several methods for handling
censored survival data. Portfolio selection methods based on expected shortfall
risk are also now included. See Koenker, R. (2005) Quantile Regression, Cambridge U. Press,
<doi:10.1017/CBO9780511754098> and Koenker, R. et al. (2017) Handbook of Quantile Regression,
CRC Press, <doi:10.1201/9781315120256>.
Author: Roger Koenker [cre, aut],
Stephen Portnoy [ctb] ,
Pin Tian Ng [ctb] ,
Blaise Melly [ctb] ,
Achim Zeileis [ctb] ,
Philip Grosjean [ctb] ,
Cleve Moler [ctb] ,
Yousef Saad [ctb] ,
Victor Chernozhukov [ctb] ,
Ivan Fernandez-Val [ctb] ,
Brian D Ripley [tr [...truncated...]
Maintainer: Roger Koenker <rkoenker@illinois.edu>
Diff between quantreg versions 5.98 dated 2024-05-26 and 5.99 dated 2024-10-22
DESCRIPTION | 6 MD5 | 18 - R/anova.R | 8 R/crq.R | 2 R/quantreg.R | 8 R/table.R | 4 build/vignette.rds |binary inst/ChangeLog | 10 src/chlfct.f | 12 - src/cholesky.f | 549 ++++++++++++++++++++++++++++------------------------- 10 files changed, 340 insertions(+), 277 deletions(-)
Title: A Package for Graphical Modelling in R
Description: The 'gRbase' package provides graphical modelling features
used by e.g. the packages 'gRain', 'gRim' and 'gRc'. 'gRbase' implements
graph algorithms including (i) maximum cardinality search (for marked
and unmarked graphs).
(ii) moralization, (iii) triangulation, (iv) creation of junction tree.
'gRbase' facilitates array operations,
'gRbase' implements functions for testing for conditional independence.
'gRbase' illustrates how hierarchical log-linear models may be
implemented and describes concept of graphical meta
data.
The facilities of the package are documented in the book by Højsgaard,
Edwards and Lauritzen (2012,
<doi:10.1007/978-1-4614-2299-0>) and in the paper by
Dethlefsen and Højsgaard, (2005, <doi:10.18637/jss.v014.i17>).
Please see 'citation("gRbase")' for citation details.
Author: Soeren Hoejsgaard [aut, cre]
Maintainer: Soeren Hoejsgaard <sorenh@math.aau.dk>
Diff between gRbase versions 2.0.2 dated 2024-06-05 and 2.0.3 dated 2024-10-22
gRbase-2.0.2/gRbase/R/DATA_cad.R |only gRbase-2.0.2/gRbase/R/grbase_check_functions.R |only gRbase-2.0.2/gRbase/R/yyy_prim.R |only gRbase-2.0.2/gRbase/vignettes/obsolete_vignette |only gRbase-2.0.3/gRbase/DESCRIPTION | 14 gRbase-2.0.3/gRbase/MD5 | 183 ++++------ gRbase-2.0.3/gRbase/NAMESPACE | 6 gRbase-2.0.3/gRbase/NEWS | 9 gRbase-2.0.3/gRbase/R/DATA_grbase.R | 119 +++++- gRbase-2.0.3/gRbase/R/NAMESPACE_grbase.R | 4 gRbase-2.0.3/gRbase/R/api_array_cell.R | 8 gRbase-2.0.3/gRbase/R/api_array_parray.R | 2 gRbase-2.0.3/gRbase/R/api_array_simulate.R | 9 gRbase-2.0.3/gRbase/R/api_array_tabX.R | 61 --- gRbase-2.0.3/gRbase/R/api_array_tab_create.R | 23 - gRbase-2.0.3/gRbase/R/api_array_tableX_bristol.R | 2 gRbase-2.0.3/gRbase/R/graph_coerce.R | 8 gRbase-2.0.3/gRbase/R/graph_coerce_list.R | 28 - gRbase-2.0.3/gRbase/R/graph_coerce_xxx2yyy.R | 103 ----- gRbase-2.0.3/gRbase/R/graph_create_ugdag.R | 28 - gRbase-2.0.3/gRbase/R/graph_iplot.R | 21 - gRbase-2.0.3/gRbase/R/graph_is.R | 33 - gRbase-2.0.3/gRbase/R/graph_mcs.R | 7 gRbase-2.0.3/gRbase/R/graph_moralize.R | 13 gRbase-2.0.3/gRbase/R/graph_querygraph.R | 29 - gRbase-2.0.3/gRbase/R/graph_rip.R | 43 -- gRbase-2.0.3/gRbase/R/graph_topo_sort.R | 7 gRbase-2.0.3/gRbase/R/graph_triangulate.R | 63 --- gRbase-2.0.3/gRbase/R/graph_utilities.R | 6 gRbase-2.0.3/gRbase/R/grbase_utilities.R | 102 +++-- gRbase-2.0.3/gRbase/R/igraph_mintriang.R | 64 --- gRbase-2.0.3/gRbase/R/igraph_mpd.R | 25 - gRbase-2.0.3/gRbase/R/xxx_downstream_depends.R | 18 gRbase-2.0.3/gRbase/R/zzz.R | 30 - gRbase-2.0.3/gRbase/README.md | 29 + gRbase-2.0.3/gRbase/build/vignette.rds |binary gRbase-2.0.3/gRbase/inst/doc/arrays.R | 19 - gRbase-2.0.3/gRbase/inst/doc/arrays.html | 183 +++++----- gRbase-2.0.3/gRbase/inst/doc/arrays.rmd | 170 ++++----- gRbase-2.0.3/gRbase/inst/doc/graphs.html | 74 ++-- gRbase-2.0.3/gRbase/man/array-simulate.Rd | 5 gRbase-2.0.3/gRbase/man/data-BodyFat.Rd | 1 gRbase-2.0.3/gRbase/man/data-Nutrimouse.Rd | 1 gRbase-2.0.3/gRbase/man/data-ashtrees.Rd | 1 gRbase-2.0.3/gRbase/man/data-breastcancer.Rd | 1 gRbase-2.0.3/gRbase/man/data-carcass.Rd | 1 gRbase-2.0.3/gRbase/man/data-chestSim.Rd | 1 gRbase-2.0.3/gRbase/man/data-dietox.Rd | 1 gRbase-2.0.3/gRbase/man/data-dumping.Rd | 1 gRbase-2.0.3/gRbase/man/data-lizard.Rd | 1 gRbase-2.0.3/gRbase/man/data-mathmark.Rd | 1 gRbase-2.0.3/gRbase/man/data-mildew.Rd | 1 gRbase-2.0.3/gRbase/man/data-milkcomp.Rd | 1 gRbase-2.0.3/gRbase/man/data-personality.Rd | 1 gRbase-2.0.3/gRbase/man/data-rats.Rd | 1 gRbase-2.0.3/gRbase/man/data-reinis.Rd | 1 gRbase-2.0.3/gRbase/man/data-wine.Rd | 1 gRbase-2.0.3/gRbase/man/data_cad.Rd | 3 gRbase-2.0.3/gRbase/man/graph-coerce-api.Rd | 1 gRbase-2.0.3/gRbase/man/graph-coerce.Rd | 1 gRbase-2.0.3/gRbase/man/graph-create.Rd | 6 gRbase-2.0.3/gRbase/man/graph-edgeList.Rd | 2 gRbase-2.0.3/gRbase/man/graph-mcs.Rd | 3 gRbase-2.0.3/gRbase/man/graph-min-triangulate.Rd | 6 gRbase-2.0.3/gRbase/man/graph-moralize.Rd | 5 gRbase-2.0.3/gRbase/man/graph-mpd.Rd | 8 gRbase-2.0.3/gRbase/man/graph-rip.Rd | 4 gRbase-2.0.3/gRbase/man/graph-triangulate.Rd | 10 gRbase-2.0.3/gRbase/man/graph_iplot.Rd | 2 gRbase-2.0.3/gRbase/man/graph_is.Rd | 10 gRbase-2.0.3/gRbase/man/graph_topo_sort.Rd | 5 gRbase-2.0.3/gRbase/man/internal.Rd | 8 gRbase-2.0.3/gRbase/vignettes/arrays.rmd | 170 ++++----- gRbase-2.0.3/gRbase/vignettes/fig/GRAPHsamelay-1.png |binary gRbase-2.0.3/gRbase/vignettes/fig/GRAPHunnamed-chunk-17-1.png |binary gRbase-2.0.3/gRbase/vignettes/fig/GRAPHunnamed-chunk-20-1.png |binary gRbase-2.0.3/gRbase/vignettes/fig/GRAPHunnamed-chunk-24-1.png |binary gRbase-2.0.3/gRbase/vignettes/fig/GRAPHunnamed-chunk-25-1.png |binary gRbase-2.0.3/gRbase/vignettes/fig/GRAPHunnamed-chunk-28-1.png |binary gRbase-2.0.3/gRbase/vignettes/fig/GRAPHunnamed-chunk-29-1.png |binary gRbase-2.0.3/gRbase/vignettes/fig/GRAPHunnamed-chunk-30-1.png |binary gRbase-2.0.3/gRbase/vignettes/fig/GRAPHunnamed-chunk-39-1.png |binary gRbase-2.0.3/gRbase/vignettes/fig/GRAPHunnamed-chunk-4-1.png |binary gRbase-2.0.3/gRbase/vignettes/fig/GRAPHunnamed-chunk-44-1.png |binary gRbase-2.0.3/gRbase/vignettes/fig/GRAPHunnamed-chunk-47-1.png |binary gRbase-2.0.3/gRbase/vignettes/fig/GRAPHunnamed-chunk-49-1.png |binary gRbase-2.0.3/gRbase/vignettes/fig/GRAPHunnamed-chunk-52-1.png |binary gRbase-2.0.3/gRbase/vignettes/fig/GRAPHunnamed-chunk-53-1.png |binary gRbase-2.0.3/gRbase/vignettes/fig/GRAPHunnamed-chunk-58-1.png |binary gRbase-2.0.3/gRbase/vignettes/fig/GRAPHunnamed-chunk-6-1.png |binary 90 files changed, 722 insertions(+), 1086 deletions(-)
Title: Confidence Interval Post-Selection of Variable
Description: Calculates confidence intervals after variable selection using repeated data splits. The package offers methods to address the challenges of post-selection inference, ensuring more accurate confidence intervals in models involving variable selection. The two main functions are 'lmps', which records the different models selected across multiple data splits as well as the corresponding coefficient estimates, and 'cips', which takes the lmps object as input to select variables and perform inferences using two types of voting.
Author: Boubacar DIALLO [aut, cre]
Maintainer: Boubacar DIALLO <boubacar.diallo0@yahoo.com>
Diff between CIpostSelect versions 0.2.0 dated 2024-10-04 and 0.2.1 dated 2024-10-22
CIpostSelect-0.2.0/CIpostSelect/man/predict.CIps.Rd |only CIpostSelect-0.2.1/CIpostSelect/DESCRIPTION | 6 CIpostSelect-0.2.1/CIpostSelect/MD5 | 9 CIpostSelect-0.2.1/CIpostSelect/NAMESPACE | 1 CIpostSelect-0.2.1/CIpostSelect/R/uneFonction.R | 686 ++++++++++++++++++-- CIpostSelect-0.2.1/CIpostSelect/man/CIps.Rd | 2 6 files changed, 643 insertions(+), 61 deletions(-)
Title: Breaks for Additive Season and Trend
Description: Decomposition of time series into
trend, seasonal, and remainder components with methods for detecting and
characterizing abrupt changes within the trend and seasonal components. 'BFAST'
can be used to analyze different types of satellite image time series and can
be applied to other disciplines dealing with seasonal or non-seasonal time
series, such as hydrology, climatology, and econometrics. The algorithm can be
extended to label detected changes with information on the parameters of the
fitted piecewise linear models. 'BFAST' monitoring functionality is described
in Verbesselt et al. (2010) <doi:10.1016/j.rse.2009.08.014>. 'BFAST monitor'
provides functionality to detect disturbance in near real-time based on 'BFAST'-
type models, and is described in Verbesselt et al. (2012) <doi:10.1016/j.rse.2012.02.022>.
'BFAST Lite' approach is a flexible approach that handles missing data
without interpolation, and will be described in an upcoming paper.
Furthermore, different mode [...truncated...]
Author: Jan Verbesselt [aut],
Dainius Masiliūnas [aut, cre] ,
Achim Zeileis [aut],
Rob Hyndman [ctb],
Marius Appel [aut],
Martin Jung [ctb],
Andrei Mîrț [ctb] ,
Paulo Negri Bernardino [ctb],
Dongdong Kong [ctb]
Maintainer: Dainius Masiliūnas <pastas4@gmail.com>
Diff between bfast versions 1.6.1 dated 2021-05-10 and 1.7.0 dated 2024-10-22
bfast-1.6.1/bfast/inst/extdata/modisraster.grd |only bfast-1.6.1/bfast/inst/extdata/modisraster.gri |only bfast-1.7.0/bfast/DESCRIPTION | 23 +-- bfast-1.7.0/bfast/MD5 | 49 +++--- bfast-1.7.0/bfast/NAMESPACE | 2 bfast-1.7.0/bfast/NEWS | 21 ++ bfast-1.7.0/bfast/R/bfast-package.R | 10 - bfast-1.7.0/bfast/R/bfast.R | 30 ++-- bfast-1.7.0/bfast/R/bfastlite.R | 67 ++++++--- bfast-1.7.0/bfast/R/bfastpp.R | 4 bfast-1.7.0/bfast/R/bfastts.R | 20 -- bfast-1.7.0/bfast/R/history_roc.R | 13 - bfast-1.7.0/bfast/R/plot.bfast.R | 2 bfast-1.7.0/bfast/build/partial.rdb |binary bfast-1.7.0/bfast/inst/CITATION | 79 +++++----- bfast-1.7.0/bfast/inst/REFERENCES.bib | 16 +- bfast-1.7.0/bfast/inst/extdata/modisraster.tif |only bfast-1.7.0/bfast/man/bfast.Rd | 8 - bfast-1.7.0/bfast/man/bfastlite.Rd | 65 ++++++++ bfast-1.7.0/bfast/man/bfastmonitor.Rd | 26 +-- bfast-1.7.0/bfast/man/bfastts.Rd | 14 - bfast-1.7.0/bfast/man/dates.Rd | 2 bfast-1.7.0/bfast/man/harvest.Rd | 2 bfast-1.7.0/bfast/man/modisraster.Rd | 4 bfast-1.7.0/bfast/man/plot.bfast.Rd | 2 bfast-1.7.0/bfast/man/simts.Rd | 2 bfast-1.7.0/bfast/tests/Examples/bfast-Ex.Rout.save | 145 +++----------------- 27 files changed, 312 insertions(+), 294 deletions(-)
Title: Calculation of the Integrated Flow of Particles Between Polygons
Description: Calculate the flow of particles between polygons by two integration methods:
integration by a cubature method and integration on a grid of points.
Annie Bouvier, Kien Kieu, Kasia Adamczyk and Herve Monod (2009)
<doi:10.1016/j.envsoft.2008.11.006>.
Author: Annie Bouvier [aut, cph],
Kien Kieu [aut, cph],
Kasia Adamczyk [aut, cph],
Herve Monod [aut, cph],
Jean-Francois Rey [cre]
Maintainer: Jean-Francois Rey <jean-francois.rey@inrae.fr>
Diff between RCALI versions 0.3.6 dated 2024-02-16 and 0.3.7 dated 2024-10-22
RCALI-0.3.6/RCALI/tests/out.out |only RCALI-0.3.7/RCALI/DESCRIPTION | 8 ++++---- RCALI-0.3.7/RCALI/MD5 | 15 +++++++-------- RCALI-0.3.7/RCALI/src/calimacros.h | 10 +++++----- RCALI-0.3.7/RCALI/src/go.cc | 2 +- RCALI-0.3.7/RCALI/src/methodAdapt.cc | 12 ++++++------ RCALI-0.3.7/RCALI/src/methodGrid.cc | 12 ++++++------ RCALI-0.3.7/RCALI/src/readPoly.cc | 6 +++--- RCALI-0.3.7/RCALI/src/util.cc | 2 +- 9 files changed, 33 insertions(+), 34 deletions(-)
Title: Likelihood Analyses for Common Statistical Tests
Description: A collection of functions that calculate the log likelihood
(support) for a range of statistical tests. Where possible the likelihood
function and likelihood interval for the observed data are displayed. The
evidential approach used here is based on the book "Likelihood" by A.W.F.
Edwards (1992, ISBN-13 : 978-0801844430), "Statistical Evidence" by R.
Royall (1997, ISBN-13 : 978-0412044113), S.N. Goodman & R. Royall
(2011) <doi:10.2105/AJPH.78.12.1568>, "Understanding
Psychology as a Science" by Z. Dienes (2008, ISBN-13 : 978-0230542310),
S. Glover & P. Dixon <doi:10.3758/BF03196706>
and others. This package accompanies "Evidence-Based Statistics" by
P. Cahusac (2020, ISBN-13 : 978-1119549802)
<doi:10.1002/9781119549833>.
Author: Peter Cahusac [aut, cre]
Maintainer: Peter Cahusac <peteqsac@gmail.com>
Diff between likelihoodR versions 1.1.4 dated 2023-09-14 and 1.1.5 dated 2024-10-22
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/L_t_test_sample_size.R | 8 ++++---- 3 files changed, 10 insertions(+), 10 deletions(-)
Title: Graphical User Interface for Seasonal Adjustment
Description: A graphical user interface to the 'seasonal' package and
'X-13ARIMA-SEATS', the U.S. Census Bureau's seasonal adjustment software.
Author: Christoph Sax [aut, cre]
Maintainer: Christoph Sax <christoph.sax@gmail.com>
Diff between seasonalview versions 0.3 dated 2017-05-04 and 1.0.0 dated 2024-10-22
seasonalview-0.3/seasonalview/NEWS |only seasonalview-1.0.0/seasonalview/DESCRIPTION | 25 ++++++------ seasonalview-1.0.0/seasonalview/MD5 | 20 ++++----- seasonalview-1.0.0/seasonalview/NEWS.md |only seasonalview-1.0.0/seasonalview/R/format_seascall.R | 2 seasonalview-1.0.0/seasonalview/R/html_summary.R | 8 +-- seasonalview-1.0.0/seasonalview/R/importable-xts.R | 6 +- seasonalview-1.0.0/seasonalview/R/seasonalview-package.R | 4 - seasonalview-1.0.0/seasonalview/README.md | 16 ++++--- seasonalview-1.0.0/seasonalview/inst/app/global.R | 3 - seasonalview-1.0.0/seasonalview/inst/app/server.R | 8 +-- seasonalview-1.0.0/seasonalview/man/seasonalview-package.Rd | 5 -- 12 files changed, 45 insertions(+), 52 deletions(-)
Title: High-Dimensional Location Testing with Normal-Reference
Approaches
Description: We provide a collection of various classical tests and latest normal-reference tests for comparing high-dimensional mean vectors including two-sample and general linear hypothesis testing (GLHT) problem. Some existing tests for two-sample problem [see Bai, Zhidong, and Hewa Saranadasa.(1996) <https://www.jstor.org/stable/24306018>; Chen, Song Xi, and Ying-Li Qin.(2010) <doi:10.1214/09-aos716>; Srivastava, Muni S., and Meng Du.(2008) <doi:10.1016/j.jmva.2006.11.002>; Srivastava, Muni S., Shota Katayama, and Yutaka Kano.(2013)<doi:10.1016/j.jmva.2012.08.014>]. Normal-reference tests for two-sample problem [see Zhang, Jin-Ting, Jia Guo, Bu Zhou, and Ming-Yen Cheng.(2020) <doi:10.1080/01621459.2019.1604366>; Zhang, Jin-Ting, Bu Zhou, Jia Guo, and Tianming Zhu.(2021) <doi:10.1016/j.jspi.2020.11.008>; Zhang, Liang, Tianming Zhu, and Jin-Ting Zhang.(2020) <doi:10.1016/j.ecosta.2019.12.002>; Zhang, Liang, Tianming Zhu, and Jin-Ting Zhang.(2023) <doi [...truncated...]
Author: Pengfei Wang [aut, cre],
Shuqi Luo [aut],
Tianming Zhu [aut],
Bu Zhou [aut]
Maintainer: Pengfei Wang <nie23.wp8738@e.ntu.edu.sg>
Diff between HDNRA versions 2.0.0 dated 2024-10-18 and 2.0.1 dated 2024-10-22
HDNRA-2.0.0/HDNRA/R/BS1996.TS.NART.R |only HDNRA-2.0.0/HDNRA/man/BS1996.TS.NART.Rd |only HDNRA-2.0.1/HDNRA/DESCRIPTION | 8 ++++---- HDNRA-2.0.1/HDNRA/MD5 | 18 +++++++++--------- HDNRA-2.0.1/HDNRA/NAMESPACE | 2 +- HDNRA-2.0.1/HDNRA/NEWS.md | 8 ++++++++ HDNRA-2.0.1/HDNRA/R/BS1996.TS.NABT.R |only HDNRA-2.0.1/HDNRA/R/RcppExports.R | 4 ++-- HDNRA-2.0.1/HDNRA/build/partial.rdb |binary HDNRA-2.0.1/HDNRA/man/BS1996.TS.NABT.Rd |only HDNRA-2.0.1/HDNRA/src/HDNRA.cpp | 2 +- HDNRA-2.0.1/HDNRA/src/RcppExports.cpp | 10 +++++----- 12 files changed, 30 insertions(+), 22 deletions(-)
Title: Encoding Coordinates into 'Google' Polylines
Description: Encodes simple feature ('sf') objects and coordinates, and decodes polylines
using the 'Google' polyline encoding algorithm (<https://developers.google.com/maps/documentation/utilities/polylinealgorithm>).
Author: David Cooley [aut, cre],
Paulo Barcelos [ctb] ,
Chris Muir [ctb]
Maintainer: David Cooley <dcooley@symbolix.com.au>
Diff between googlePolylines versions 0.8.4 dated 2023-09-05 and 0.8.5 dated 2024-10-22
googlePolylines-0.8.4/googlePolylines/inst/include |only googlePolylines-0.8.5/googlePolylines/DESCRIPTION | 12 googlePolylines-0.8.5/googlePolylines/MD5 | 4158 +++++++++- googlePolylines-0.8.5/googlePolylines/NEWS.md | 4 googlePolylines-0.8.5/googlePolylines/build/vignette.rds |binary googlePolylines-0.8.5/googlePolylines/inst/doc/sfencode.html | 86 googlePolylines-0.8.5/googlePolylines/inst/i |only googlePolylines-0.8.5/googlePolylines/src/Makevars | 2 googlePolylines-0.8.5/googlePolylines/src/Makevars.win | 2 googlePolylines-0.8.5/googlePolylines/src/RcppExports.cpp | 1 googlePolylines-0.8.5/googlePolylines/src/wkt.cpp | 6 googlePolylines-0.8.5/googlePolylines/tests/testthat/test-sfencoded.R | 13 12 files changed, 4209 insertions(+), 75 deletions(-)
More information about googlePolylines at CRAN
Permanent link
More information about flourishcharts at CRAN
Permanent link
Title: Causal Inference with Continuous (Multiple Time Point)
Interventions
Description: Estimation of counterfactual outcomes for multiple values of continuous interventions at different time points, and plotting of causal dose-response curves. Details are given in Schomaker, McIlleron, Denti, Diaz (2024) <doi:10.48550/arXiv.2305.06645>.
Author: Michael Schomaker [aut, cre]
Maintainer: Michael Schomaker <michael.schomaker@stat.uni-muenchen.de>
Diff between CICI versions 0.9.1 dated 2023-09-18 and 0.9.2 dated 2024-10-22
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- R/gformula.r | 14 ++++++-------- man/CICI-package.Rd | 8 ++++---- 4 files changed, 18 insertions(+), 20 deletions(-)
Title: Exploratory Data Analysis for the 'spatstat' Family
Description: Functionality for exploratory data analysis and nonparametric analysis of
spatial data, mainly spatial point patterns,
in the 'spatstat' family of packages.
(Excludes analysis of spatial data on a linear network,
which is covered by the separate package 'spatstat.linnet'.)
Methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics, and kernel estimates of covariate effects. Formal hypothesis tests of random pattern (chi-squared, Kolmogorov-Smirnov, Monte Carlo, Diggle-Cressie-Loosmore-Ford, Dao-Genton, two-stage Monte Carlo) and tests for covariate effects (Cox-Berman-Waller-Lawson, Kolmogorov-Smirnov, ANOVA) are also supported.
Author: Adrian Baddeley [aut, cre, cph]
,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Kasper Klitgaard Berthelsen [ctb],
Warick Brown [cph],
Achmad Choiruddin [ctb],
Jean-Francois Coeurjolly [ctb],
Ottmar Cronie [ctb],
Tilman Davies [ctb, cph],
Julian Gi [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.explore versions 3.3-2 dated 2024-08-21 and 3.3-3 dated 2024-10-22
DESCRIPTION | 8 ++++---- MD5 | 24 ++++++++++++++++-------- NAMESPACE | 12 ++++++++++++ NEWS | 29 +++++++++++++++++++++++++++++ R/SmoothHeat.R |only R/blurHeat.R |only R/bw.ppl.R | 11 ++++++++--- R/densityHeat.ppp.R | 4 ++++ R/relriskHeat.R |only inst/doc/packagesizes.txt | 2 +- inst/info/packagesizes.txt | 2 +- man/SmoothHeat.Rd |only man/SmoothHeat.ppp.Rd |only man/blurHeat.Rd |only man/bw.ppl.Rd | 8 ++++---- man/bw.relriskHeatppp.Rd |only man/relriskHeat.Rd |only 17 files changed, 79 insertions(+), 21 deletions(-)
More information about spatstat.explore at CRAN
Permanent link
Title: Efficiently Retrieve and Process Satellite Imagery
Description: Downloads spatial data from spatiotemporal asset catalogs
('STAC'), computes standard spectral indices from the Awesome Spectral
Indices project (Montero et al. (2023) <doi:10.1038/s41597-023-02096-0>)
against raster data, and glues the outputs together into predictor bricks.
Methods focus on interoperability with the broader spatial ecosystem;
function arguments and outputs use classes from 'sf' and 'terra', and data
downloading functions support complex 'CQL2' queries using 'rstac'.
Author: Michael Mahoney [aut, cre] ,
Felipe Carvalho [rev] for
rOpenSci, see
<https://github.com/ropensci/software-review/issues/636>),
Michael Sumner [rev] for
rOpenSci, see
<https://github.com/ropensci/software-review/issues/636>),
Permian Global [cph, f [...truncated...]
Maintainer: Michael Mahoney <mike.mahoney.218@gmail.com>
Diff between rsi versions 0.3.0 dated 2024-10-02 and 0.3.1 dated 2024-10-22
rsi-0.3.0/rsi/tests/testthat/_snaps/get_stac_data.md |only rsi-0.3.1/rsi/DESCRIPTION | 6 rsi-0.3.1/rsi/MD5 | 27 - rsi-0.3.1/rsi/NEWS.md | 5 rsi-0.3.1/rsi/R/download.R | 1 rsi-0.3.1/rsi/R/query_and_sign.R | 2 rsi-0.3.1/rsi/README.md | 99 ----- rsi-0.3.1/rsi/inst/doc/rsi.html | 330 +++++++---------- rsi-0.3.1/rsi/man/figures/README-unnamed-chunk-3-1.png |binary rsi-0.3.1/rsi/man/figures/README-unnamed-chunk-4-1.png |binary rsi-0.3.1/rsi/man/figures/README-unnamed-chunk-5-1.png |binary rsi-0.3.1/rsi/man/figures/README-unnamed-chunk-7-1.png |binary rsi-0.3.1/rsi/man/figures/README-unnamed-chunk-8-1.png |binary rsi-0.3.1/rsi/tests/testthat/test-get_stac_data.R | 5 rsi-0.3.1/rsi/tests/testthat/test-query_and_sign.R | 3 15 files changed, 188 insertions(+), 290 deletions(-)
Title: Design and Analysis of Replication Studies
Description: Provides utilities for the design and analysis of replication
studies. Features both traditional methods based on statistical
significance and more recent methods such as the sceptical p-value;
Held L. (2020) <doi:10.1111/rssa.12493>, Held et al. (2022)
<doi:10.1214/21-AOAS1502>, Micheloud et al. (2023) <doi:10.1111/stan.12312>.
Also provides related methods including the harmonic mean chi-squared
test; Held, L. (2020) <doi:10.1111/rssc.12410>, and intrinsic
credibility; Held, L. (2019) <doi:10.1098/rsos.181534>. Contains
datasets from five large-scale replication projects.
Author: Leonhard Held [aut] ,
Samuel Pawel [cre] ,
Charlotte Micheloud [aut] ,
Florian Gerber [aut] ,
Felix Hofmann [aut]
Maintainer: Samuel Pawel <samuel.pawel@uzh.ch>
Diff between ReplicationSuccess versions 1.3.2 dated 2024-02-22 and 1.3.3 dated 2024-10-22
DESCRIPTION | 10 +++++----- MD5 | 36 +++++++++++++++++++++--------------- NAMESPACE | 3 +++ NEWS.md | 7 +++++++ R/datasets.R | 2 +- R/pEdgington.R |only R/powerEdgington.R |only R/powerSignificance.R | 2 +- R/predictionInterval.R | 2 +- R/sampleSizeEdgington.R |only R/sampleSizeSignificance.R | 2 +- README.md | 8 ++++++-- build/partial.rdb |binary build/vignette.rds |binary inst/doc/ReplicationSuccess.pdf |binary man/RProjects.Rd | 2 +- man/pEdgington.Rd |only man/powerEdgington.Rd |only man/powerSignificance.Rd | 2 +- man/predictionInterval.Rd | 2 +- man/sampleSizeEdgington.Rd |only man/sampleSizeSignificance.Rd | 2 +- 22 files changed, 50 insertions(+), 30 deletions(-)
More information about ReplicationSuccess at CRAN
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Title: A Lightweight, Modern and Flexible Logging Utility
Description: Inspired by the the 'futile.logger' R package and 'logging'
Python module, this utility provides a flexible and extensible way of
formatting and delivering log messages with low overhead.
Author: Gergely Daroczi [aut, cre] ,
Hadley Wickham [aut] ,
System1 [fnd]
Maintainer: Gergely Daroczi <daroczig@rapporter.net>
Diff between logger versions 0.3.0 dated 2024-03-05 and 0.4.0 dated 2024-10-22
logger-0.3.0/logger/demo |only logger-0.3.0/logger/inst/load-packages-in-background-process.R |only logger-0.3.0/logger/man/catch_base_log.Rd |only logger-0.3.0/logger/man/fallback_namespace.Rd |only logger-0.3.0/logger/man/get_logger_definitions.Rd |only logger-0.3.0/logger/man/grayscale_by_log_level.Rd |only logger-0.3.0/logger/man/log_config_setter.Rd |only logger-0.3.0/logger/man/top_env_name.Rd |only logger-0.3.0/logger/man/validate_log_level.Rd |only logger-0.3.0/logger/man/warn_if_globalCallingHandlers_is_not_available.Rd |only logger-0.3.0/logger/tests/testthat/test-CRANSKIP-appenders.R |only logger-0.3.0/logger/tests/testthat/test-CRANSKIP-helpers.R |only logger-0.3.0/logger/tests/testthat/test-CRANSKIP-hooks.R |only logger-0.3.0/logger/tests/testthat/test-CRANSKIP-logger-namespaces.R |only logger-0.3.0/logger/tests/testthat/test-appender.R |only logger-0.3.0/logger/tests/testthat/test-layout.R |only logger-0.4.0/logger/DESCRIPTION | 44 logger-0.4.0/logger/LICENSE |only logger-0.4.0/logger/MD5 | 243 ++-- logger-0.4.0/logger/NAMESPACE | 1 logger-0.4.0/logger/NEWS.md | 25 logger-0.4.0/logger/R/appenders.R | 574 ++++------ logger-0.4.0/logger/R/color.R | 109 - logger-0.4.0/logger/R/formatters.R | 401 +++--- logger-0.4.0/logger/R/helpers.R | 301 ++--- logger-0.4.0/logger/R/hooks.R | 220 +-- logger-0.4.0/logger/R/layouts.R | 482 ++++---- logger-0.4.0/logger/R/levels.R | 119 +- logger-0.4.0/logger/R/logger-meta.R |only logger-0.4.0/logger/R/logger-package.R |only logger-0.4.0/logger/R/logger.R | 571 +++++---- logger-0.4.0/logger/R/try.R | 47 logger-0.4.0/logger/R/utils.R | 141 +- logger-0.4.0/logger/R/zzz.R | 71 - logger-0.4.0/logger/README.md | 240 ++-- logger-0.4.0/logger/build/vignette.rds |binary logger-0.4.0/logger/inst/demo-packages/logger-tester-package/DESCRIPTION | 4 logger-0.4.0/logger/inst/demo-packages/logger-tester-package/LICENSE |only logger-0.4.0/logger/inst/demo-packages/logger-tester-package/NAMESPACE | 3 logger-0.4.0/logger/inst/demo-packages/logger-tester-package/R/tester.R | 9 logger-0.4.0/logger/inst/demo-packages/logger-tester-package/man/logger_info_tester_function.Rd |only logger-0.4.0/logger/inst/doc/Intro.R | 41 logger-0.4.0/logger/inst/doc/Intro.Rmd | 41 logger-0.4.0/logger/inst/doc/Intro.html | 56 logger-0.4.0/logger/inst/doc/anatomy.R | 33 logger-0.4.0/logger/inst/doc/anatomy.Rmd | 43 logger-0.4.0/logger/inst/doc/anatomy.html | 345 ------ logger-0.4.0/logger/inst/doc/customize_logger.R | 110 - logger-0.4.0/logger/inst/doc/customize_logger.Rmd | 114 - logger-0.4.0/logger/inst/doc/customize_logger.html | 170 +- logger-0.4.0/logger/inst/doc/migration.R | 119 -- logger-0.4.0/logger/inst/doc/migration.Rmd | 120 -- logger-0.4.0/logger/inst/doc/migration.html | 161 +- logger-0.4.0/logger/inst/doc/performance.R |only logger-0.4.0/logger/inst/doc/performance.Rmd | 12 logger-0.4.0/logger/inst/doc/performance.html | 21 logger-0.4.0/logger/inst/doc/r_packages.R | 17 logger-0.4.0/logger/inst/doc/r_packages.Rmd | 18 logger-0.4.0/logger/inst/doc/r_packages.html | 6 logger-0.4.0/logger/inst/doc/write_custom_extensions.R | 3 logger-0.4.0/logger/inst/doc/write_custom_extensions.Rmd | 4 logger-0.4.0/logger/man/appender_async.Rd | 63 - logger-0.4.0/logger/man/appender_console.Rd | 12 logger-0.4.0/logger/man/appender_file.Rd | 50 logger-0.4.0/logger/man/appender_kinesis.Rd | 15 logger-0.4.0/logger/man/appender_pushbullet.Rd | 17 logger-0.4.0/logger/man/appender_slack.Rd | 15 logger-0.4.0/logger/man/appender_stdout.Rd | 12 logger-0.4.0/logger/man/appender_syslog.Rd | 14 logger-0.4.0/logger/man/appender_syslognet.Rd | 2 logger-0.4.0/logger/man/appender_tee.Rd | 28 logger-0.4.0/logger/man/appender_telegram.Rd | 18 logger-0.4.0/logger/man/colorize_by_log_level.Rd | 41 logger-0.4.0/logger/man/fail_on_missing_package.Rd | 12 logger-0.4.0/logger/man/figures/logo.png |only logger-0.4.0/logger/man/formatter_glue.Rd | 26 logger-0.4.0/logger/man/formatter_glue_or_sprintf.Rd | 43 logger-0.4.0/logger/man/formatter_glue_safe.Rd | 22 logger-0.4.0/logger/man/formatter_json.Rd | 26 logger-0.4.0/logger/man/formatter_logging.Rd | 45 logger-0.4.0/logger/man/formatter_pander.Rd | 32 logger-0.4.0/logger/man/formatter_paste.Rd | 22 logger-0.4.0/logger/man/formatter_sprintf.Rd | 22 logger-0.4.0/logger/man/get_logger_meta_variables.Rd | 76 - logger-0.4.0/logger/man/grapes-except-grapes.Rd | 11 logger-0.4.0/logger/man/layout_blank.Rd | 37 logger-0.4.0/logger/man/layout_glue.Rd | 37 logger-0.4.0/logger/man/layout_glue_colors.Rd | 55 logger-0.4.0/logger/man/layout_glue_generator.Rd | 38 logger-0.4.0/logger/man/layout_json.Rd | 25 logger-0.4.0/logger/man/layout_json_parser.Rd | 33 logger-0.4.0/logger/man/layout_logging.Rd | 45 logger-0.4.0/logger/man/layout_simple.Rd | 37 logger-0.4.0/logger/man/layout_syslognet.Rd | 20 logger-0.4.0/logger/man/log_appender.Rd | 19 logger-0.4.0/logger/man/log_errors.Rd | 6 logger-0.4.0/logger/man/log_eval.Rd | 17 logger-0.4.0/logger/man/log_failure.Rd | 6 logger-0.4.0/logger/man/log_formatter.Rd | 11 logger-0.4.0/logger/man/log_indices.Rd |only logger-0.4.0/logger/man/log_layout.Rd | 15 logger-0.4.0/logger/man/log_level.Rd | 143 +- logger-0.4.0/logger/man/log_levels.Rd | 48 logger-0.4.0/logger/man/log_messages.Rd | 6 logger-0.4.0/logger/man/log_separator.Rd | 38 logger-0.4.0/logger/man/log_shiny_input_changes.Rd | 22 logger-0.4.0/logger/man/log_threshold.Rd | 14 logger-0.4.0/logger/man/log_tictoc.Rd | 12 logger-0.4.0/logger/man/log_warnings.Rd | 9 logger-0.4.0/logger/man/log_with_separator.Rd | 45 logger-0.4.0/logger/man/logger-package.Rd |only logger-0.4.0/logger/man/logger.Rd | 50 logger-0.4.0/logger/man/skip_formatter.Rd | 13 logger-0.4.0/logger/man/with_log_threshold.Rd | 27 logger-0.4.0/logger/tests/testthat.R | 14 logger-0.4.0/logger/tests/testthat/_snaps |only logger-0.4.0/logger/tests/testthat/helper.R |only logger-0.4.0/logger/tests/testthat/test-appenders.R |only logger-0.4.0/logger/tests/testthat/test-eval.R | 48 logger-0.4.0/logger/tests/testthat/test-formatters.R | 289 ++--- logger-0.4.0/logger/tests/testthat/test-helpers.R | 90 + logger-0.4.0/logger/tests/testthat/test-hooks.R |only logger-0.4.0/logger/tests/testthat/test-layouts.R |only logger-0.4.0/logger/tests/testthat/test-logger-meta.R |only logger-0.4.0/logger/tests/testthat/test-logger.R | 314 ++--- logger-0.4.0/logger/tests/testthat/test-return.R | 33 logger-0.4.0/logger/tests/testthat/test-try.R |only logger-0.4.0/logger/tests/testthat/test-utils.R | 56 logger-0.4.0/logger/vignettes/Intro.Rmd | 41 logger-0.4.0/logger/vignettes/anatomy.Rmd | 43 logger-0.4.0/logger/vignettes/customize_logger.Rmd | 114 - logger-0.4.0/logger/vignettes/migration.Rmd | 120 -- logger-0.4.0/logger/vignettes/performance.Rmd | 12 logger-0.4.0/logger/vignettes/r_packages.Rmd | 18 logger-0.4.0/logger/vignettes/write_custom_extensions.Rmd | 4 135 files changed, 4041 insertions(+), 3646 deletions(-)
Title: Spatially Explicit Capture-Recapture for Linear Habitats
Description: Tools for spatially explicit capture-recapture analysis of animal populations in linear habitats, extending package 'secr'.
Author: Murray Efford [aut, cre]
Maintainer: Murray Efford <murray.efford@otago.ac.nz>
Diff between secrlinear versions 1.2.2 dated 2023-10-17 and 1.2.4 dated 2024-10-22
secrlinear-1.2.2/secrlinear/vignettes/secrlinear-vignette_cache/latex/simCH_8f5f1111a8cc19494e2c1652b5a63d27.RData |only secrlinear-1.2.2/secrlinear/vignettes/secrlinear-vignette_cache/latex/simCH_8f5f1111a8cc19494e2c1652b5a63d27.rdb |only secrlinear-1.2.2/secrlinear/vignettes/secrlinear-vignette_cache/latex/simCH_8f5f1111a8cc19494e2c1652b5a63d27.rdx |only secrlinear-1.2.4/secrlinear/DESCRIPTION | 18 ++- secrlinear-1.2.4/secrlinear/MD5 | 50 +++++----- secrlinear-1.2.4/secrlinear/NAMESPACE | 4 secrlinear-1.2.4/secrlinear/NEWS | 12 ++ secrlinear-1.2.4/secrlinear/R/asgraph.R | 8 - secrlinear-1.2.4/secrlinear/R/linearkd.R |only secrlinear-1.2.4/secrlinear/R/read.linearmask.R | 12 +- secrlinear-1.2.4/secrlinear/build/partial.rdb |binary secrlinear-1.2.4/secrlinear/build/vignette.rds |binary secrlinear-1.2.4/secrlinear/data/arvicola.RData |binary secrlinear-1.2.4/secrlinear/data/glymemask.RData |binary secrlinear-1.2.4/secrlinear/inst/doc/secrlinear-vignette.R | 3 secrlinear-1.2.4/secrlinear/inst/doc/secrlinear-vignette.Rmd | 5 - secrlinear-1.2.4/secrlinear/inst/doc/secrlinear-vignette.pdf |binary secrlinear-1.2.4/secrlinear/man/edges.Rd | 1 secrlinear-1.2.4/secrlinear/man/linearkd.Rd |only secrlinear-1.2.4/secrlinear/man/linearmask.object.Rd | 2 secrlinear-1.2.4/secrlinear/man/make.line.Rd | 2 secrlinear-1.2.4/secrlinear/man/plotmethods.Rd | 6 - secrlinear-1.2.4/secrlinear/man/read.linearmask.Rd | 2 secrlinear-1.2.4/secrlinear/man/secrlinear-package.Rd | 4 secrlinear-1.2.4/secrlinear/man/showpath.Rd | 2 secrlinear-1.2.4/secrlinear/man/utility.Rd | 2 secrlinear-1.2.4/secrlinear/vignettes/secrlinear-vignette.Rmd | 5 - secrlinear-1.2.4/secrlinear/vignettes/secrlinear-vignette_cache/latex/simCH_b933fd091c93db5f7daaa1c9aa066114.RData |only secrlinear-1.2.4/secrlinear/vignettes/secrlinear-vignette_cache/latex/simCH_b933fd091c93db5f7daaa1c9aa066114.rdb |only secrlinear-1.2.4/secrlinear/vignettes/secrlinear-vignette_cache/latex/simCH_b933fd091c93db5f7daaa1c9aa066114.rdx |only 30 files changed, 83 insertions(+), 55 deletions(-)
Title: Statistical Catch-at-Age Plotting Environment
Description: Import, plot, and diagnose results from statistical
catch-at-age models, used in fisheries stock assessment.
Author: Arni Magnusson [aut, cre]
Maintainer: Arni Magnusson <thisisarni@gmail.com>
Diff between scape versions 2.3.3 dated 2020-11-23 and 2.3.5 dated 2024-10-22
scape-2.3.3/scape/NEWS |only scape-2.3.3/scape/data/x.cod.R |only scape-2.3.3/scape/data/x.ling.R |only scape-2.3.3/scape/data/x.oreo.R |only scape-2.3.3/scape/data/x.saithe.R |only scape-2.3.3/scape/data/x.sbw.R |only scape-2.3.3/scape/data/xmcmc.R |only scape-2.3.3/scape/data/xproj.R |only scape-2.3.5/scape/DESCRIPTION | 10 ++- scape-2.3.5/scape/MD5 | 73 ++++++++++++++-------------- scape-2.3.5/scape/NEWS.md |only scape-2.3.5/scape/R/estN.R | 4 - scape-2.3.5/scape/R/estSigmaI.R | 6 +- scape-2.3.5/scape/R/estSigmaR.R | 2 scape-2.3.5/scape/R/getN.R | 2 scape-2.3.5/scape/R/getSigmaI.R | 4 - scape-2.3.5/scape/R/getSigmaR.R | 2 scape-2.3.5/scape/R/plotB.R | 2 scape-2.3.5/scape/R/plotCA.R | 4 - scape-2.3.5/scape/R/plotCL.R | 4 - scape-2.3.5/scape/R/plotIndex.R | 4 - scape-2.3.5/scape/R/plotLA.R | 2 scape-2.3.5/scape/R/plotN.R | 4 - scape-2.3.5/scape/R/plotSel.R | 2 scape-2.3.5/scape/build/partial.rdb |only scape-2.3.5/scape/build/vignette.rds |binary scape-2.3.5/scape/data/x.cod.rda |only scape-2.3.5/scape/data/x.ling.rda |only scape-2.3.5/scape/data/x.oreo.rda |only scape-2.3.5/scape/data/x.saithe.rda |only scape-2.3.5/scape/data/x.sbw.rda |only scape-2.3.5/scape/data/xmcmc.rda |only scape-2.3.5/scape/data/xproj.rda |only scape-2.3.5/scape/inst/doc/dsc-vignette.pdf |binary scape-2.3.5/scape/inst/doc/gallery.pdf |binary scape-2.3.5/scape/inst/doc/mymodel.pdf |binary scape-2.3.5/scape/man/estN.Rd | 25 +++++---- scape-2.3.5/scape/man/getSigmaR.Rd | 4 - scape-2.3.5/scape/man/importCol.Rd | 9 +-- scape-2.3.5/scape/man/importMCMC.Rd | 9 +-- scape-2.3.5/scape/man/importProj.Rd | 9 +-- scape-2.3.5/scape/man/scape-package.Rd | 21 ++++---- scape-2.3.5/scape/man/x.cod.Rd | 15 +++-- scape-2.3.5/scape/man/x.ling.Rd | 14 +++-- scape-2.3.5/scape/man/x.oreo.Rd | 27 +++++----- scape-2.3.5/scape/man/xmcmc.Rd | 8 +-- 46 files changed, 146 insertions(+), 120 deletions(-)
Title: Partial Principal Component Analysis of Partitioned Large Sparse
Matrices
Description: Performs partial principal component analysis of a large sparse matrix.
The matrix may be stored as a list of matrices to be concatenated (implicitly) horizontally.
Useful application includes cases where the number of total nonzero entries exceed the capacity of
32 bit integers (e.g., with large Single Nucleotide Polymorphism data).
Author: Srika Raja [aut, cre],
Somak Dutta [aut]
Maintainer: Srika Raja <sri1919@iastate.edu>
Diff between pPCA versions 1.0 dated 2024-10-11 and 1.1 dated 2024-10-22
DESCRIPTION | 8 ++++---- MD5 | 14 ++++++++------ NAMESPACE | 2 ++ R/pPCA.r | 7 ++++--- R/pca_list.R | 49 ++++++++++++++++++++++++++++--------------------- R/pca_matrix.R | 42 +++++++++++++++++++++++++++--------------- R/print.R |only man/pPCA.Rd | 4 +++- man/print.pPCA.Rd |only 9 files changed, 76 insertions(+), 50 deletions(-)
Title: Bivariate (Two-Dimensional) Confidence Region and Frequency
Distribution
Description: Generic functions to analyze the distribution of two continuous
variables: 'conf2d' to calculate a smooth empirical confidence region, and
'freq2d' to calculate a frequency distribution.
Author: Arni Magnusson [aut, cre],
Julian Burgos [aut],
Gregory R. Warnes [ctb]
Maintainer: Arni Magnusson <thisisarni@gmail.com>
Diff between r2d2 versions 1.0.1 dated 2022-05-11 and 1.0.2 dated 2024-10-22
DESCRIPTION | 9 +++++---- MD5 | 18 +++++++++--------- NEWS.md | 10 +++++++++- build/partial.rdb |binary data/Ushape.rda |binary data/saithe.rda |binary man/conf2d.Rd | 12 ++++++------ man/freq2d.Rd | 10 +++++----- man/r2d2-package.Rd | 6 +++--- man/saithe.Rd | 2 +- 10 files changed, 38 insertions(+), 29 deletions(-)
Title: Tools to Work with Microsoft SQL Server Databases via 'RODBC'
Description: Tools that extend the functionality of the 'RODBC' package to work
with Microsoft SQL Server databases. Makes it easier to browse the database
and examine individual tables and views.
Author: Arni Magnusson [aut, cre]
Maintainer: Arni Magnusson <thisisarni@gmail.com>
Diff between MSSQL versions 1.0.0 dated 2021-03-10 and 1.0.1 dated 2024-10-22
MSSQL-1.0.0/MSSQL/NEWS |only MSSQL-1.0.1/MSSQL/DESCRIPTION | 11 +++--- MSSQL-1.0.1/MSSQL/MD5 | 44 +++++++++++++------------- MSSQL-1.0.1/MSSQL/NEWS.md |only MSSQL-1.0.1/MSSQL/R/MSSQL-package.R | 9 ++--- MSSQL-1.0.1/MSSQL/R/dbOverview.R | 7 ++-- MSSQL-1.0.1/MSSQL/R/dbStorage.R | 2 - MSSQL-1.0.1/MSSQL/R/dbTime.R | 2 - MSSQL-1.0.1/MSSQL/R/tableHead.R | 4 +- MSSQL-1.0.1/MSSQL/R/tableNcol.R | 4 +- MSSQL-1.0.1/MSSQL/R/tableNrow.R | 4 +- MSSQL-1.0.1/MSSQL/R/tableOverview.R | 5 +- MSSQL-1.0.1/MSSQL/R/tableQuote.R | 3 + MSSQL-1.0.1/MSSQL/build/vignette.rds |binary MSSQL-1.0.1/MSSQL/inst/doc/implementation.pdf |binary MSSQL-1.0.1/MSSQL/man/MSSQL-package.Rd | 5 +- MSSQL-1.0.1/MSSQL/man/dbOverview.Rd | 7 ++-- MSSQL-1.0.1/MSSQL/man/dbStorage.Rd | 2 - MSSQL-1.0.1/MSSQL/man/dbTime.Rd | 2 - MSSQL-1.0.1/MSSQL/man/tableHead.Rd | 4 +- MSSQL-1.0.1/MSSQL/man/tableNcol.Rd | 4 +- MSSQL-1.0.1/MSSQL/man/tableNrow.Rd | 4 +- MSSQL-1.0.1/MSSQL/man/tableOverview.Rd | 5 +- MSSQL-1.0.1/MSSQL/man/tableQuote.Rd | 3 + 24 files changed, 69 insertions(+), 62 deletions(-)
Title: Various R Programming Tools for Data Manipulation
Description: Various R programming tools for data manipulation, including
medical unit conversions, combining objects, character vector operations,
factor manipulation, obtaining information about R objects, generating
fixed-width format files, extracting components of date & time objects,
operations on columns of data frames, matrix operations, operations on
vectors, operations on data frames, value of last evaluated expression, and a
resample() wrapper for sample() that ensures consistent behavior for both
scalar and vector arguments.
Author: Gregory R. Warnes [aut],
Gregor Gorjanc [aut],
Arni Magnusson [aut, cre],
Liviu Andronic [aut],
Jim Rogers [aut],
Don MacQueen [aut],
Ales Korosec [aut],
Ben Bolker [ctb],
Michael Chirico [ctb],
Gabor Grothendieck [ctb],
Thomas Lumley [ctb],
Brian Ri [...truncated...]
Maintainer: Arni Magnusson <thisisarni@gmail.com>
Diff between gdata versions 3.0.0 dated 2023-10-16 and 3.0.1 dated 2024-10-22
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- NEWS | 11 +++++++++++ R/ll.R | 4 ++-- build/vignette.rds |binary data/MedUnits.rda |binary inst/doc/mapLevels.pdf |binary inst/doc/unknown.pdf |binary man/is.what.Rd | 9 ++++----- 9 files changed, 30 insertions(+), 20 deletions(-)