Thu, 24 Oct 2024

Package tstests updated to version 1.0.1 with previous version 1.0.0 dated 2024-05-15

Title: Time Series Goodness of Fit and Forecast Evaluation Tests
Description: Goodness of Fit and Forecast Evaluation Tests for timeseries models. Includes, among others, the Generalized Method of Moments (GMM) Orthogonality Test of Hansen (1982), the Nyblom (1989) parameter constancy test, the sign-bias test of Engle and Ng (1993), and a range of tests for value at risk and expected shortfall evaluation.
Author: Alexios Galanos [aut, cre, cph]
Maintainer: Alexios Galanos <alexios@4dscape.com>

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Package stats19 updated to version 3.2.0 with previous version 3.1.0 dated 2024-08-01

Title: Work with Open Road Traffic Casualty Data from Great Britain
Description: Tools to help download, process and analyse the UK road collision data collected using the 'STATS19' form. The datasets are provided as 'CSV' files with detailed road safety information about the circumstances of car crashes and other incidents on the roads resulting in casualties in Great Britain from 1979 to present. Tables are available on 'colissions' with the circumstances (e.g. speed limit of road), information about 'vehicles' involved (e.g. type of vehicle), and 'casualties' (e.g. age). The statistics relate only to events on public roads that were reported to the police, and subsequently recorded, using the 'STATS19' collision reporting form. See the Department for Transport website <https://www.data.gov.uk/dataset/cb7ae6f0-4be6-4935-9277-47e5ce24a11f/road-safety-data> for more information on these datasets. The package is described in a paper in the Journal of Open Source Software (Lovelace et al. 2019) <doi:10.21105/joss.01181>. See Gilardi et al. (2022) <doi [...truncated...]
Author: Robin Lovelace [aut, cre] , Malcolm Morgan [aut] , Layik Hama [aut] , Mark Padgham [aut] , David Ranzolin [rev], Adam Sparks [rev, ctb] , Ivo Wengraf [ctb], RAC Foundation [fnd]
Maintainer: Robin Lovelace <rob00x@gmail.com>

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New package icesDatsu with initial version 1.2.0
Package: icesDatsu
Version: 1.2.0
Title: Functions to Interact with the ICES Data Submission Utility (DATSU)
Description: Functions to Interact with the ICES Data Submission Utility (DATSU) <https://datsu.ices.dk/web/index.aspx>.
License: GPL (>= 2)
Suggests: knitr, rmarkdown
Imports: icesConnect (>= 1.0.0), httr, jsonlite
Encoding: UTF-8
URL: https://datsu.ices.dk/web/index.aspx, https://github.com/ices-tools-prod/icesDatsu
BugReports: https://github.com/ices-tools-prod/icesDatsu/issues
NeedsCompilation: no
Packaged: 2024-10-24 12:51:30 UTC; colin
Author: Colin Millar [aut, cre], Carlos Pinto [aut], Laura Andreea Petre [aut]
Maintainer: Colin Millar <colin.millar@ices.dk>
Repository: CRAN
Date/Publication: 2024-10-24 22:40:01 UTC

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Package saens updated to version 0.1.1 with previous version 0.1.0 dated 2024-02-21

Title: Small Area Estimation with Cluster Information for Estimation of Non-Sampled Areas
Description: Implementation of small area estimation (Fay-Herriot model) with EBLUP (Empirical Best Linear Unbiased Prediction) Approach for non-sampled area estimation by adding cluster information and assuming that there are similarities among particular areas. See also Rao & Molina (2015, ISBN:978-1-118-73578-7) and Anisa et al. (2013) <doi:10.9790/5728-10121519>.
Author: Ridson Al Farizal P [aut, cre, cph] , Azka Ubaidillah [aut]
Maintainer: Ridson Al Farizal P <alfrzlp@gmail.com>

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Package loadeR updated to version 1.3.0 with previous version 1.2.0 dated 2024-05-09

Title: Load Data for Analysis System
Description: Provides a framework to load text and excel files through a 'shiny' graphical interface. It allows renaming, transforming, ordering and removing variables. It includes basic exploratory methods such as the mean, median, mode, normality test, histogram and correlation.
Author: Oldemar Rodriguez [aut, cre], Diego Jimenez [aut], Joseline Quiros [aut]
Maintainer: Oldemar Rodriguez <oldemar.rodriguez@ucr.ac.cr>

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Package causaldata updated to version 0.1.4 with previous version 0.1.3 dated 2021-12-01

Title: Example Data Sets for Causal Inference Textbooks
Description: Example data sets to run the example problems from causal inference textbooks. Currently, contains data sets for Huntington-Klein, Nick (2021 and 2025) "The Effect" <https://theeffectbook.net>, first and second edition, Cunningham, Scott (2021 and 2025, ISBN-13: 978-0-300-25168-5) "Causal Inference: The Mixtape", and Hernán, Miguel and James Robins (2020) "Causal Inference: What If" <https://www.hsph.harvard.edu/miguel-hernan/causal-inference-book/>.
Author: Nick Huntington-Klein [aut, cre] , Malcolm Barrett [aut]
Maintainer: Nick Huntington-Klein <nhuntington-klein@seattleu.edu>

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Package adaptivetau updated to version 2.3-2 with previous version 2.3-1 dated 2024-04-17

Title: Tau-Leaping Stochastic Simulation
Description: Implements adaptive tau leaping to approximate the trajectory of a continuous-time stochastic process as described by Cao et al. (2007) The Journal of Chemical Physics <doi:10.1063/1.2745299> (aka. the Gillespie stochastic simulation algorithm). This package is based upon work supported by NSF DBI-0906041 and NIH K99-GM104158 to Philip Johnson and NIH R01-AI049334 to Rustom Antia.
Author: Philip Johnson [aut, cre]
Maintainer: Philip Johnson <plfj@umd.edu>

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Package tidysq updated to version 1.2.2 with previous version 1.2.1 dated 2024-10-06

Title: Tidy Processing and Analysis of Biological Sequences
Description: A tidy approach to analysis of biological sequences. All processing and data-storage functions are heavily optimized to allow the fastest and most efficient data storage.
Author: Dominik Rafacz [cre, aut] , Michal Burdukiewicz [aut] , Laura Bakala [aut], Leon Eyrich Jessen [ctb] , Stefan Roediger [ctb] , Jadwiga Slowik [ctb] , Weronika Puchala [ctb] , Katarzyna Sidorczuk [ctb], Filip Pietluch [ctb], Jaroslaw Chilimoniuk [ctb] [...truncated...]
Maintainer: Dominik Rafacz <dominikrafacz@gmail.com>

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Package mult.latent.reg updated to version 0.2.0 with previous version 0.1.9 dated 2024-09-06

Title: Regression and Clustering in Multivariate Response Scenarios
Description: Fitting multivariate response models with random effects on one or two levels; whereby the (one-dimensional) random effect represents a latent variable approximating the multivariate space of outcomes, after possible adjustment for covariates. The method is particularly useful for multivariate, highly correlated outcome variables with unobserved heterogeneities. Applications include regression with multivariate responses, as well as multivariate clustering or ranking problems. See Zhang and Einbeck (2024) <doi:10.1007/s42519-023-00357-0>.
Author: Yingjuan Zhang [aut, cre], Jochen Einbeck [aut, ctb]
Maintainer: Yingjuan Zhang <yingjuan.zhang@durham.ac.uk>

Diff between mult.latent.reg versions 0.1.9 dated 2024-09-06 and 0.2.0 dated 2024-10-24

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Package preferably (with last version 0.4.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2022-07-20 0.4.1
2021-12-02 0.4
2021-05-02 0.3.1
2021-04-22 0.3.0

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Package smerc updated to version 1.8.4 with previous version 1.8.3 dated 2023-10-10

Title: Statistical Methods for Regional Counts
Description: Implements statistical methods for analyzing the counts of areal data, with a focus on the detection of spatial clusters and clustering. The package has a heavy emphasis on spatial scan methods, which were first introduced by Kulldorff and Nagarwalla (1995) <doi:10.1002/sim.4780140809> and Kulldorff (1997) <doi:10.1080/03610929708831995>.
Author: Joshua French [aut, cre] , Mohammad Meysami [ctb]
Maintainer: Joshua French <joshua.french@ucdenver.edu>

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Package Rcmdr updated to version 2.9-5 with previous version 2.9-4 dated 2024-10-04

Title: R Commander
Description: A platform-independent basic-statistics GUI (graphical user interface) for R, based on the tcltk package.
Author: John Fox [aut, cre], Milan Bouchet-Valat [aut], Manuel Munoz Marquez [aut], Liviu Andronic [ctb], Michael Ash [ctb], Theophilius Boye [ctb], Stefano Calza [ctb], Andy Chang [ctb], Vilmantas Gegzna [ctb], Philippe Grosjean [ctb], Richard Heiberger [ct [...truncated...]
Maintainer: John Fox <jfox@mcmaster.ca>

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Package handwriter updated to version 3.2.1 with previous version 3.2.0 dated 2024-10-09

Title: Handwriting Analysis in R
Description: Perform statistical writership analysis of scanned handwritten documents. Webpage provided at: <https://github.com/CSAFE-ISU/handwriter>.
Author: Iowa State University of Science and Technology on behalf of its Center for Statistics and Applications in Forensic Evidence [aut, cph, fnd], Nick Berry [aut], Stephanie Reinders [aut, cre], James Taylor [aut], Felix Baez-Santiago [ctb], Jon Gonzalez [...truncated...]
Maintainer: Stephanie Reinders <srein@iastate.edu>

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Package glmnetr updated to version 0.5-4 with previous version 0.5-3 dated 2024-08-28

Title: Nested Cross Validation for the Relaxed Lasso and Other Machine Learning Models
Description: Cross validation informed Relaxed LASSO, Artificial Neural Network (ANN), gradient boosting machine ('xgboost'), Random Forest ('RandomForestSRC'), Oblique Random Forest ('aorsf'), Recursive Partitioning ('RPART') or step wise regression models are fit. Cross validation leave out samples (leading to nested cross validation) or bootstrap out-of-bag samples are used to evaluate and compare performances between these models with results presented in tabular or graphical means. Calibration plots can also be generated, again based upon (outer nested) cross validation or bootstrap leave out (out of bag) samples. For some datasets, for example when the design matrix is not of full rank, 'glmnet' may have very long run times when fitting the relaxed lasso model, from our experience when fitting Cox models on data with many predictors and many patients, making it difficult to get solutions from either glmnet() or cv.glmnet(). This may be remedied by using the 'path=TRUE' option when calling [...truncated...]
Author: Walter K Kremers [aut, cre] , Nicholas B Larson [ctb]
Maintainer: Walter K Kremers <kremers.walter@mayo.edu>

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Package misty updated to version 0.6.8 with previous version 0.6.7 dated 2024-09-18

Title: Miscellaneous Functions 'T. Yanagida'
Description: Miscellaneous functions for (1) data management (e.g., grand-mean and group-mean centering, coding variables and reverse coding items, scale and cluster scores, reading and writing Excel and SPSS files), (2) descriptive statistics (e.g., frequency table, cross tabulation, effect size measures), (3) missing data (e.g., descriptive statistics for missing data, missing data pattern, Little's test of Missing Completely at Random, and auxiliary variable analysis), (4) multilevel data (e.g., multilevel descriptive statistics, within-group and between-group correlation matrix, multilevel confirmatory factor analysis, level-specific fit indices, cross-level measurement equivalence evaluation, multilevel composite reliability, and multilevel R-squared measures), (5) item analysis (e.g., confirmatory factor analysis, coefficient alpha and omega, between-group and longitudinal measurement equivalence evaluation), (6) statistical analysis (e.g., confidence intervals, collinearity and residual diag [...truncated...]
Author: Takuya Yanagida [aut, cre]
Maintainer: Takuya Yanagida <takuya.yanagida@univie.ac.at>

Diff between misty versions 0.6.7 dated 2024-09-18 and 0.6.8 dated 2024-10-24

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Package memisc updated to version 0.99.31.8.1 with previous version 0.99.31.8 dated 2024-09-28

Title: Management of Survey Data and Presentation of Analysis Results
Description: An infrastructure for the management of survey data including value labels, definable missing values, recoding of variables, production of code books, and import of (subsets of) 'SPSS' and 'Stata' files is provided. Further, the package allows to produce tables and data frames of arbitrary descriptive statistics and (almost) publication-ready tables of regression model estimates, which can be exported to 'LaTeX' and HTML.
Author: Martin Elff [aut, cre], Christopher N. Lawrence [ctb], Dave Atkins [ctb], Jason W. Morgan [ctb], Achim Zeileis [ctb], Mael Astruc-Le Souder [ctb], Kiril Mueller [ctb], Pieter Schoonees [ctb]
Maintainer: Martin Elff <memisc@elff.eu>

Diff between memisc versions 0.99.31.8 dated 2024-09-28 and 0.99.31.8.1 dated 2024-10-24

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New package VisCov with initial version 1.4.0
Package: VisCov
Title: Visualizing of Distributions of Covariance Matrices
Version: 1.4.0
Maintainer: Kristof Meers <kristof.meers+cran@kuleuven.be>
Depends: R (>= 2.12.0)
Imports: bayesm, clusterGeneration, scatterplot3d, KernSmooth
Description: Visualizing of distributions of covariance matrices. The package implements the methodology described in Tokuda, T., Goodrich, B., Van Mechelen, I., Gelman, A., & Tuerlinckx, F. (2012) <https://stat.columbia.edu/~gelman/research/unpublished/Visualization.pdf>.
License: GPL (>= 3)
NeedsCompilation: no
Language: en-US
Packaged: 2024-10-22 15:13:41 UTC; u0046811
Author: Tomoki Tokuda [aut], Ben Goodrich [ctb], Iven Van Mechelen [ctb], Andrew Gelman [ctb], Francis Tuerlinckx [ctb], Kristof Meers [cre]
Repository: CRAN
Date/Publication: 2024-10-24 15:10:02 UTC

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Package Distance updated to version 2.0.0 with previous version 1.0.9 dated 2023-12-21

Title: Distance Sampling Detection Function and Abundance Estimation
Description: A simple way of fitting detection functions to distance sampling data for both line and point transects. Adjustment term selection, left and right truncation as well as monotonicity constraints and binning are supported. Abundance and density estimates can also be calculated (via a Horvitz-Thompson-like estimator) if survey area information is provided. See Miller et al. (2019) <doi:10.18637/jss.v089.i01> for more information on methods and <https://examples.distancesampling.org/> for example analyses.
Author: Laura Marshall [cre], David Miller [aut], T.J. Clark-Wolf [aut], Len Thomas [ctb], Jeff Laake [ctb], Eric Rexstad [rev]
Maintainer: Laura Marshall <lhm@st-andrews.ac.uk>

Diff between Distance versions 1.0.9 dated 2023-12-21 and 2.0.0 dated 2024-10-24

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New package AutoWMM with initial version 1.0.1
Package: AutoWMM
Title: Perform the Weighted Multiplier Method on Trees
Version: 1.0.1
Maintainer: Mallory J Flynn <mallory.flynn@stat.ubc.ca>
Description: When many possible multiplier method estimates of a target population are available, a weighted sum of estimates from each back-calculated path can be achieved with this package. Variance-minimizing weights are used and with any admissible tree-structured data. The methodological basis used to create this package can be found in Flynn (2023) <http://hdl.handle.net/2429/86174>.
License: GPL (>= 2)
URL: https://github.com/malfly/AutoWMM
Depends: R (>= 4.3.0)
Imports: data.tree, DiagrammeR, dplyr, gtools, MASS, rlang, magrittr, tidyselect
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
Encoding: UTF-8
LazyData: true
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2024-10-22 16:37:36 UTC; mallory
Author: Mallory J Flynn [cre, aut]
Repository: CRAN
Date/Publication: 2024-10-24 15:10:10 UTC

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New package ARTtransfer with initial version 1.0.0
Package: ARTtransfer
Title: Adaptive and Robust Pipeline for Transfer Learning
Version: 1.0.0
Date: 2024-10-16
Description: Adaptive and Robust Transfer Learning (ART) is a flexible framework for transfer learning that integrates information from auxiliary data sources to improve model performance on primary tasks. It is designed to be robust against negative transfer by including the non-transfer model in the candidate pool, ensuring stable performance even when auxiliary datasets are less informative. See the paper, Wang, Wu, and Ye (2023) <doi:10.1002/sta4.582>.
Imports: gbm, glmnet, nnet, randomForest, stats
Encoding: UTF-8
License: GPL-2
VignetteBuilder: knitr
Suggests: knitr, rmarkdown
Repository: CRAN
NeedsCompilation: no
Packaged: 2024-10-22 16:01:01 UTC; boxiang
Author: Boxiang Wang [aut, cre], Yunan Wu [aut], Chenglong Ye [aut]
Maintainer: Boxiang Wang <boxiang-wang@uiowa.edu>
Date/Publication: 2024-10-24 15:10:14 UTC

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New package sugarglider with initial version 1.0.3
Package: sugarglider
Title: Create Glyph-Maps of Spatiotemporal Data
Version: 1.0.3
Description: Provides 'ggplot2' extensions to construct glyph-maps for visualizing seasonality in spatiotemporal data. See the Journal of Statistical Software reference: Zhang, H. S., Cook, D., Laa, U., Langrené, N., & Menéndez, P. (2024) <doi:10.18637/jss.v110.i07>. The manuscript for this package is currently under preparation and can be found on GitHub at <https://github.com/maliny12/paper-sugarglider>.
License: MIT + file LICENSE
URL: https://maliny12.github.io/sugarglider/, https://github.com/maliny12/sugarglider
Encoding: UTF-8
LazyData: true
Imports: dplyr, ggplot2
Depends: R (>= 3.0.0)
Suggests: testthat (>= 3.0.0), ggplotify, tidyr, grid, lubridate, knitr, rmarkdown, gridExtra, ozmaps, sf, tidyverse, viridis, ggthemes, vdiffr, kableExtra, ggiraph, jsonlite, httr, usmap, geosphere, purrr
VignetteBuilder: knitr
BugReports: https://github.com/maliny12/sugarglider/issues
NeedsCompilation: no
Packaged: 2024-10-22 01:05:21 UTC; malinypo
Author: Maliny Po [aut, cre, cph] , S. Nathan Yang [aut] , H. Sherry Zhang [ctb] , Dianne Cook [ctb]
Maintainer: Maliny Po <malinypo12@gmail.com>
Repository: CRAN
Date/Publication: 2024-10-24 14:10:02 UTC

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New package MedDataSets with initial version 0.1.0
Package: MedDataSets
Title: Comprehensive Medical, Disease, Treatment, and Drug Datasets
Version: 0.1.0
Maintainer: Renzo Caceres Rossi <arenzocaceresrossi@gmail.com>
Description: Provides an extensive collection of datasets related to medicine, diseases, treatments, drugs, and public health. This package covers topics such as drug effectiveness, vaccine trials, survival rates, infectious disease outbreaks, and medical treatments. The included datasets span various health conditions, including AIDS, cancer, bacterial infections, and COVID-19, along with information on pharmaceuticals and vaccines. These datasets are sourced from the R ecosystem and other R packages, remaining unaltered to ensure data integrity. This package serves as a valuable resource for researchers, analysts, and healthcare professionals interested in conducting medical and public health data analysis in R.
License: GPL-3
URL: https://github.com/lightbluetitan/meddatasets
Encoding: UTF-8
LazyData: true
Suggests: ggplot2, dplyr, devtools, knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2024-10-22 07:17:09 UTC; renzorossiv
Author: Renzo Caceres Rossi [aut, cre]
Depends: R (>= 3.5.0)
Repository: CRAN
Date/Publication: 2024-10-24 14:20:02 UTC

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New package mall with initial version 0.1.0
Package: mall
Title: Run Multiple Large Language Model Predictions Against a Table, or Vectors
Version: 0.1.0
Description: Run multiple 'Large Language Model' predictions against a table. The predictions run row-wise over a specified column. It works using a one-shot prompt, along with the current row's content. The prompt that is used will depend of the type of analysis needed.
License: MIT + file LICENSE
Encoding: UTF-8
Imports: cli, dplyr, fs, glue, jsonlite, ollamar, rlang
Suggests: dbplyr, testthat (>= 3.0.0)
URL: https://mlverse.github.io/mall/
Depends: R (>= 2.10)
LazyData: true
NeedsCompilation: no
Packaged: 2024-10-22 12:51:31 UTC; edgar
Author: Edgar Ruiz [aut, cre], Posit Software, PBC [cph, fnd]
Maintainer: Edgar Ruiz <edgar@posit.co>
Repository: CRAN
Date/Publication: 2024-10-24 14:30:02 UTC

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New package Jcvrisk with initial version 0.1.0
Package: Jcvrisk
Title: Risk Calculator for Cardiovascular Disease in Japan
Version: 0.1.0
Maintainer: Hiroshi Okumiyama <xzxz2019@iCloud.com>
Description: A calculation tool to obtain the 10-year risk of cardiovascular disease from various risk models (Hisayama, Suita, EPOCH Japan).
License: MIT + file LICENSE
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2024-10-22 08:07:35 UTC; student
Author: Hiroshi Okumiyama [aut, cre], Ryosuke Fujii [aut]
Repository: CRAN
Date/Publication: 2024-10-24 14:20:06 UTC

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New package ipd with initial version 0.1.2
Package: ipd
Title: Inference on Predicted Data
Version: 0.1.2
Maintainer: Stephen Salerno <ssalerno@fredhutch.org>
Description: Performs valid statistical inference on predicted data (IPD) using recent methods, where for a subset of the data, the outcomes have been predicted by an algorithm. Provides a wrapper function with specified defaults for the type of model and method to be used for estimation and inference. Further provides methods for tidying and summarizing results. Salerno et al., (2024) <doi:10.48550/arXiv.2410.09665>.
License: MIT + file LICENSE
URL: https://github.com/ipd-tools/ipd
BugReports: https://github.com/ipd-tools/ipd/issues
Depends: R (>= 3.5.0)
Imports: caret, gam, generics, ranger, splines, stats, MASS, randomForest
Suggests: knitr, patchwork, rmarkdown, spelling, testthat (>= 3.0.0), tidyverse
VignetteBuilder: knitr
Encoding: UTF-8
Language: en-US
NeedsCompilation: no
Packaged: 2024-10-18 15:31:44 UTC; saler
Author: Stephen Salerno [aut, cre, cph] , Jiacheng Miao [aut], Awan Afiaz [aut], Kentaro Hoffman [aut], Anna Neufeld [aut], Qiongshi Lu [aut], Tyler H McCormick [aut], Jeffrey T Leek [aut]
Repository: CRAN
Date/Publication: 2024-10-24 14:40:02 UTC

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New package cascadess with initial version 0.2.0
Package: cascadess
Title: A Style Pronoun for 'htmltools' Tags
Version: 0.2.0
Description: Apply styles to tag elements directly and with the .style pronoun. Using the pronoun, styles are created within the context of a tag element. Change borders, backgrounds, text, margins, layouts, and more.
License: MIT + file LICENSE
URL: https://nteetor.github.io/cascadess/, https://github.com/nteetor/cascadess
BugReports: https://github.com/nteetor/cascadess/issues
Encoding: UTF-8
Depends: R (>= 3.5)
Imports: htmltools (>= 0.4.0), magrittr (>= 1.5), rlang, utils
Suggests: cli, rmarkdown, shiny, testthat (>= 2.1.0)
NeedsCompilation: no
Packaged: 2024-10-22 01:38:08 UTC; nteetor
Author: Nathan Teetor [aut, cre, cph], The Bootstrap Authors [cph] , Twitter, Inc [cph]
Maintainer: Nathan Teetor <nate@haufin.ch>
Repository: CRAN
Date/Publication: 2024-10-24 14:10:07 UTC

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Package bsvars updated to version 3.2 with previous version 3.1 dated 2024-07-14

Title: Bayesian Estimation of Structural Vector Autoregressive Models
Description: Provides fast and efficient procedures for Bayesian analysis of Structural Vector Autoregressions. This package estimates a wide range of models, including homo-, heteroskedastic, and non-normal specifications. Structural models can be identified by adjustable exclusion restrictions, time-varying volatility, or non-normality. They all include a flexible three-level equation-specific local-global hierarchical prior distribution for the estimated level of shrinkage for autoregressive and structural parameters. Additionally, the package facilitates predictive and structural analyses such as impulse responses, forecast error variance and historical decompositions, forecasting, verification of heteroskedasticity, non-normality, and hypotheses on autoregressive parameters, as well as analyses of structural shocks, volatilities, and fitted values. Beautiful plots, informative summary functions, and extensive documentation including the vignette by Woźniak (2024) <doi:10.48550/arXiv.2410.15 [...truncated...]
Author: Tomasz Wozniak [aut, cre]
Maintainer: Tomasz Wozniak <wozniak.tom@pm.me>

Diff between bsvars versions 3.1 dated 2024-07-14 and 3.2 dated 2024-10-24

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Package ProjectManagement updated to version 2.0.2 with previous version 1.5.2 dated 2023-09-14

Title: Management of Deterministic and Stochastic Projects
Description: Management problems of deterministic and stochastic projects. It obtains the duration of a project and the appropriate slack for each activity in a deterministic context. In addition it obtains a schedule of activities' time (Castro, Gómez & Tejada (2007) <doi:10.1016/j.orl.2007.01.003>). It also allows the management of resources. When the project is done, and the actual duration for each activity is known, then it can know how long the project is delayed and make a fair delivery of the delay between each activity (Bergantiños, Valencia-Toledo & Vidal-Puga (2018) <doi:10.1016/j.dam.2017.08.012>). In a stochastic context it can estimate the average duration of the project and plot the density of this duration, as well as, the density of the early and last times of the chosen activities. As in the deterministic case, it can make a distribution of the delay generated by observing the project already carried out.
Author: Juan Carlos Goncalves Dosantos [aut, cre], Ignacio Garcia Jurado [aut], Julian Costa Bouzas [aut]
Maintainer: Juan Carlos Goncalves Dosantos <juan.carlos.goncalves@udc.es>

Diff between ProjectManagement versions 1.5.2 dated 2023-09-14 and 2.0.2 dated 2024-10-24

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Package DiscreteFDR updated to version 2.0.1 with previous version 2.0.0 dated 2024-07-08

Title: FDR Based Multiple Testing Procedures with Adaptation for Discrete Tests
Description: Implementations of the multiple testing procedures for discrete tests described in the paper Döhler, Durand and Roquain (2018) "New FDR bounds for discrete and heterogeneous tests" <doi:10.1214/18-EJS1441>. The main procedures of the paper (HSU and HSD), their adaptive counterparts (AHSU and AHSD), and the HBR variant are available and are coded to take as input the results of a test procedure from package 'DiscreteTests', or a set of observed p-values and their discrete support under their nulls. A shortcut function to obtain such p-values and supports is also provided, along with a wrapper allowing to apply discrete procedures directly to data.
Author: Sebastian Doehler [aut, ctb] , Florian Junge [aut, ctb, cre] , Guillermo Durand [aut, ctb], Etienne Roquain [ctb], Christina Kihn [ctb]
Maintainer: Florian Junge <diso.fbmn@h-da.de>

Diff between DiscreteFDR versions 2.0.0 dated 2024-07-08 and 2.0.1 dated 2024-10-24

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Package papaja updated to version 0.1.3 with previous version 0.1.2 dated 2023-09-29

Title: Prepare American Psychological Association Journal Articles with R Markdown
Description: Tools to create dynamic, submission-ready manuscripts, which conform to American Psychological Association manuscript guidelines. We provide R Markdown document formats for manuscripts (PDF and Word) and revision letters (PDF). Helper functions facilitate reporting statistical analyses or create publication-ready tables and plots.
Author: Frederik Aust [aut, cre] , Marius Barth [aut] , Birk Diedenhofen [ctb], Christoph Stahl [ctb], Joseph V. Casillas [ctb], Rudolf Siegel [ctb]
Maintainer: Frederik Aust <frederik.aust@uni-koeln.de>

Diff between papaja versions 0.1.2 dated 2023-09-29 and 0.1.3 dated 2024-10-24

 DESCRIPTION                                                            |   22 
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 NAMESPACE                                                              |    3 
 R/add_custom_effect_sizes.R                                            |    5 
 R/apa6_formats.R                                                       |    8 
 R/apa_barplot.R                                                        |    4 
 R/apa_beeplot.R                                                        |    4 
 R/apa_factorial_plot.R                                                 |   88 
 R/apa_interval.R                                                       |   73 
 R/apa_lineplot.R                                                       |    7 
 R/apa_print_BFBayesFactor.R                                            |   16 
 R/apa_print_anova.R                                                    |   74 
 R/apa_print_emm_lsm.R                                                  |   24 
 R/apa_print_glm.R                                                      |    2 
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 R/arrange_anova.R                                                      |    7 
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 R/cite_r.R                                                             |   34 
 R/generate_author_yml.R                                                |    3 
 R/lookup_tables.R                                                      |   33 
 R/onload.R                                                             |   14 
 R/print_anova.R                                                        |    3 
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 R/tidy_es.R                                                            |   12 
 R/utils.R                                                              |   25 
 R/utils_text.R                                                         |    6 
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 man/add_effect_sizes.Rd                                                |    4 
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 man/apa_beeplot.Rd                                                     |   15 
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 man/apa_interval.Rd                                                    |   62 
 man/apa_lineplot.Rd                                                    |   17 
 man/apa_num.Rd                                                         |    5 
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 man/apa_print.Rd                                                       |    2 
 man/apa_print.aov.Rd                                                   |   47 
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 man/apa_print.glht.Rd                                                  |    6 
 man/apa_print.glm.Rd                                                   |   17 
 man/apa_print.htest.Rd                                                 |   21 
 man/apa_print.list.Rd                                                  |    6 
 man/apa_print.lme.Rd                                                   |    4 
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 man/cite_r.Rd                                                          |    4 
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 man/glue_apa_results.Rd                                                |    4 
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 man/lookup_tables.Rd                                                   |    4 
 man/papaja.Rd                                                          |    2 
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 man/quote_from_tex.Rd                                                  |    2 
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More information about papaja at CRAN
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Package StableEstim updated to version 2.3 with previous version 2.2 dated 2022-08-07

Title: Estimate the Four Parameters of Stable Laws using Different Methods
Description: Estimate the four parameters of stable laws using maximum likelihood method, generalised method of moments with finite and continuum number of points, iterative Koutrouvelis regression and Kogon-McCulloch method. The asymptotic properties of the estimators (covariance matrix, confidence intervals) are also provided.
Author: Tarak Kharrat [aut], Georgi N. Boshnakov [aut, cre]
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>

Diff between StableEstim versions 2.2 dated 2022-08-07 and 2.3 dated 2024-10-24

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New package spotifyr with initial version 2.2.5
Package: spotifyr
Title: R Wrapper for the 'Spotify' Web API
Version: 2.2.5
Date: 2024-10-22
Description: An R wrapper for pulling data from the 'Spotify' Web API <https://developer.spotify.com/documentation/web-api/> in bulk, or post items on a 'Spotify' user's playlist.
Maintainer: Daniel Antal <daniel.antal@dataobservatory.eu>
Depends: R (>= 3.3.0)
Imports: dplyr, purrr, httr, lubridate, jsonlite, readr, rvest, stringr, tibble, janitor, rlang, magrittr, assertthat, xml2
License: MIT + file LICENSE
Encoding: UTF-8
Suggests: ggridges, spelling, testthat (>= 3.0.0)
URL: https://github.com/charlie86/spotifyr
BugReports: https://github.com/charlie86/spotifyr/issues
Language: en-US
NeedsCompilation: no
Packaged: 2024-10-23 13:29:16 UTC; antal
Author: Charlie Thompson [aut], Daniel Antal [aut, cre] , Josiah Parry [aut] , Donal Phipps [aut], Tom Wolff [aut], Stephen Holsenbeck [ctb], Peter Harrison [ctb]
Repository: CRAN
Date/Publication: 2024-10-24 10:30:04 UTC

More information about spotifyr at CRAN
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Package SpaCCI updated to version 1.0.2 with previous version 1.0 dated 2024-09-30

Title: Spatially Aware Cell-Cell Interaction Analysis
Description: Provides tools for analyzing spatial cell-cell interactions based on ligand-receptor pairs, including functions for local, regional, and global analysis using spatial transcriptomics data. Integrates with databases like 'CellChat' <http://www.cellchat.org/>, 'CellPhoneDB' <https://www.cellphonedb.org/>, 'Cellinker' <https://www.rna-society.org/cellinker/>, 'ICELLNET' <https://github.com/soumelis-lab/ICELLNET>, and 'ConnectomeDB' <https://humanconnectome.org/software/connectomedb/> to identify ligand-receptor pairs, visualize interactions through heatmaps, chord diagrams, and infer interactions on different spatial scales.
Author: Li-Ting Ku [aut, cre]
Maintainer: Li-Ting Ku <lku@mdanderson.org>

Diff between SpaCCI versions 1.0 dated 2024-09-30 and 1.0.2 dated 2024-10-24

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Package monolix2rx updated to version 0.0.3 with previous version 0.0.1 dated 2024-09-20

Title: Converts 'Monolix' Models to 'rxode2'
Description: 'Monolix' is a tool for running mixed effects model using 'saem'. This tool allows you to convert 'Monolix' models to 'rxode2' (Wang, Hallow and James (2016) <doi:10.1002/psp4.12052>) using the form compatible with 'nlmixr2' (Fidler et al (2019) <doi:10.1002/psp4.12445>). If available, the 'rxode2' model will read in the 'Monolix' data and compare the simulation for the population model individual model and residual model to immediately show how well the translation is performing. This saves the model development time for people who are creating an 'rxode2' model manually. Additionally, this package reads in all the information to allow simulation with uncertainty (that is the number of observations, the number of subjects, and the covariance matrix) with a 'rxode2' model. This is complementary to the 'babelmixr2' package that translates 'nlmixr2' models to 'Monolix' and can convert the objects converted from 'monolix2rx' to a full 'nlmixr2' fit. While not required, you c [...truncated...]
Author: Matthew Fidler [aut, cre] , Justin Wilkins [ctb]
Maintainer: Matthew Fidler <matthew.fidler@gmail.com>

Diff between monolix2rx versions 0.0.1 dated 2024-09-20 and 0.0.3 dated 2024-10-24

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New package icesSD with initial version 2.1.0
Package: icesSD
Version: 2.1.0
Title: Stock Database Web Services
Imports: icesConnect (>= 1.0.0), httr
Suggests: testthat
Description: R interface to access the web services of the ICES Stock Database <https://sd.ices.dk>.
License: GPL (>= 2)
URL: https://sd.ices.dk, https://github.com/ices-tools-prod/icesSD
BugReports: https://github.com/ices-tools-prod/icesSD/issues
Encoding: UTF-8
Language: en-GB
NeedsCompilation: no
Packaged: 2024-10-24 08:11:54 UTC; colin
Author: Colin Millar [aut, cre], Scott Large [aut], Arni Magnusson [aut]
Maintainer: Colin Millar <colin.millar@ices.dk>
Repository: CRAN
Date/Publication: 2024-10-24 10:30:24 UTC

More information about icesSD at CRAN
Permanent link

Package Goodreader updated to version 0.1.2 with previous version 0.1.1 dated 2024-08-30

Title: Scrape and Analyze 'Goodreads' Book Data
Description: A comprehensive toolkit for scraping and analyzing book data from <https://www.goodreads.com/>. This package provides functions to search for books, scrape book details and reviews, perform sentiment analysis on reviews, and conduct topic modeling. It's designed for researchers, data analysts, and book enthusiasts who want to gain insights from 'Goodreads' data.
Author: Chao Liu [aut, cre, cph]
Maintainer: Chao Liu <chaoliu@cedarville.edu>

Diff between Goodreader versions 0.1.1 dated 2024-08-30 and 0.1.2 dated 2024-10-24

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Package distrDoc updated to version 2.8.4 with previous version 2.8.2 dated 2024-02-01

Title: Documentation for 'distr' Family of R Packages
Description: Provides documentation in form of a common vignette to packages 'distr', 'distrEx', 'distrMod', 'distrSim', 'distrTEst', 'distrTeach', and 'distrEllipse'.
Author: Florian Camphausen [ctb] , Matthias Kohl [aut, cph], Peter Ruckdeschel [cre, cph], Thomas Stabla [ctb]
Maintainer: Peter Ruckdeschel <peter.ruckdeschel@uni-oldenburg.de>

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Package admix updated to version 2.3.1 with previous version 2.1-3 dated 2024-04-25

Title: Package Admix for Admixture (aka Contamination) Models
Description: Implements techniques to estimate the unknown quantities related to two-component admixture models, where the two components can belong to any distribution (note that in the case of multinomial mixtures, the two components must belong to the same family). Estimation methods depend on the assumptions made on the unknown component density; see Bordes and Vandekerkhove (2010) <doi:10.3103/S1066530710010023>, Patra and Sen (2016) <doi:10.1111/rssb.12148>, and Milhaud, Pommeret, Salhi, Vandekerkhove (2024) <doi:10.3150/23-BEJ1593>. In practice, one can estimate both the mixture weight and the unknown component density in a wide variety of frameworks. On top of that, hypothesis tests can be performed in one and two-sample contexts to test the unknown component density (see Milhaud, Pommeret, Salhi and Vandekerkhove (2022) <doi:10.1016/j.jspi.2021.05.010>, and Milhaud, Pommeret, Salhi, Vandekerkhove (2024) <doi:10.3150/23-BEJ1593>). Finally, clustering of unknown [...truncated...]
Author: Xavier Milhaud [aut, cre], Pierre Vandekerkhove [ctb], Denys Pommeret [ctb], Yahia Salhi [ctb]
Maintainer: Xavier Milhaud <xavier.milhaud.research@gmail.com>

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Package EDCimport updated to version 0.5.0 with previous version 0.4.1 dated 2023-12-19

Title: Import Data from EDC Software
Description: A convenient toolbox to import data exported from Electronic Data Capture (EDC) software 'TrialMaster'.
Author: Dan Chaltiel [aut, cre]
Maintainer: Dan Chaltiel <dan.chaltiel@gmail.com>

Diff between EDCimport versions 0.4.1 dated 2023-12-19 and 0.5.0 dated 2024-10-24

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Package microinverterdata updated to version 0.2.0 with previous version 0.1.0 dated 2024-10-02

Title: Collect your Microinverter Data
Description: Collect and normalize local microinverter energy and power production data through off-cloud API requests. Currently supports 'APSystems', 'Enphase', and 'Fronius' microinverters.
Author: Christophe Regouby [aut, cre, cph]
Maintainer: Christophe Regouby <christophe.regouby@free.fr>

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Package icesSAG updated to version 1.5.0 with previous version 1.4.1 dated 2023-05-11

Title: Stock Assessment Graphs Database Web Services
Description: R interface to access the web services of the ICES Stock Assessment Graphs database <https://sg.ices.dk>.
Author: Colin Millar [aut, cre], Scott Large [aut], Arni Magnusson [aut], Carlos Pinto [aut], Laura Andreea Petre [aut]
Maintainer: Colin Millar <colin.millar@ices.dk>

Diff between icesSAG versions 1.4.1 dated 2023-05-11 and 1.5.0 dated 2024-10-24

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Package spqdep (with last version 0.1.3.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2024-10-21 0.1.3.3

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Package rgeoda (with last version 0.0.10-4) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2023-07-01 0.0.10-4
2023-01-30 0.0.10-2
2022-04-11 0.0.9
2021-09-08 0.0.8-6
2021-08-05 0.0.8-4
2021-07-22 0.0.8-3
2021-07-19 0.0.8-2
2021-03-04 0.0.8-1
2021-02-26 0.0.8

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Package BoundaryStats (with last version 2.2.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2024-10-19 2.2.0
2023-10-21 2.1.1
2023-06-28 2.0.1

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Package teal.logger updated to version 0.3.0 with previous version 0.2.0 dated 2024-03-24

Title: Logging Setup for the 'teal' Family of Packages
Description: Utilizing the 'logger' framework to record events within a package, specific to 'teal' family of packages. Supports logging namespaces, hierarchical logging, various log destinations, vectorization, and more.
Author: Dawid Kaledkowski [aut, cre], Konrad Pagacz [aut], F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Dawid Kaledkowski <dawid.kaledkowski@roche.com>

Diff between teal.logger versions 0.2.0 dated 2024-03-24 and 0.3.0 dated 2024-10-24

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Package Sequential updated to version 4.3.4 with previous version 4.3.3 dated 2024-02-20

Title: Exact Sequential Analysis for Poisson and Binomial Data
Description: Functions to calculate exact critical values, statistical power, expected time to signal, and required sample sizes for performing exact sequential analysis. All these calculations can be done for either Poisson or binomial data, for continuous or group sequential analyses, and for different types of rejection boundaries. In case of group sequential analyses, the group sizes do not have to be specified in advance and the alpha spending can be arbitrarily settled.
Author: Ivair Ramos Silva [aut, cre], Martin Kulldorff [aut]
Maintainer: Ivair Ramos Silva <ivair@ufop.edu.br>

Diff between Sequential versions 4.3.3 dated 2024-02-20 and 4.3.4 dated 2024-10-24

 DESCRIPTION               |   16 +++++++++++-----
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Package ggtangle updated to version 0.0.3 with previous version 0.0.2 dated 2024-09-18

Title: Draw Network with Data
Description: Extends the 'ggplot2' plotting system to support network visualization. Inspired by 'ggtree', 'ggtangle' is designed to work with network associated data.
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>

Diff between ggtangle versions 0.0.2 dated 2024-09-18 and 0.0.3 dated 2024-10-24

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