Title: Sequential Input Selection Algorithm
Description: Implements the SISAL algorithm by Tikka and Hollmén. It is
a sequential backward selection algorithm which uses a linear
model in a cross-validation setting. Starting from the full
model, one variable at a time is removed based on the
regression coefficients. From this set of models, a
parsimonious (sparse) model is found by choosing the model with
the smallest number of variables among those models where the
validation error is smaller than a threshold. Also implements
extensions which explore larger parts of the search space
and/or use ridge regression instead of ordinary least squares.
Author: Mikko Korpela [aut, cre]
Maintainer: Mikko Korpela <mvkorpel@iki.fi>
Diff between sisal versions 0.48 dated 2020-02-15 and 0.49 dated 2024-10-25
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- R/sisalData.R | 4 ++-- inst/NEWS.Rd | 24 ++++++++++++++++++++++++ man/bootMSE.Rd | 8 ++++---- man/plot.sisal.Rd | 6 +++--- man/sisal.Rd | 12 ++++++------ man/sisalData.Rd | 4 ++-- 8 files changed, 53 insertions(+), 29 deletions(-)
Title: Estimating Lengths and Uncertainty from Photogrammetric Imagery
Description: Implementation of Bayesian models for estimating object lengths and morphological relationships between object lengths using photographic data collected from drones. The Bayesian model is described in "Bayesian approach for predicting photogrammetric uncertainty in morphometric measurements derived from drones" (Bierlich et al., 2021, <doi:10.3354/meps13814>).
Author: Joshua Hewitt [aut],
K.C. Bierlich [aut, cre],
Enrico Pirotta [aut]
Maintainer: K.C. Bierlich <bierlick@oregonstate.edu>
Diff between Xcertainty versions 1.0.0 dated 2024-10-21 and 1.0.1 dated 2024-10-25
Xcertainty-1.0.0/Xcertainty/vignettes/img/TL_dist-1.png |only Xcertainty-1.0.0/Xcertainty/vignettes/img/TL_output_informative-1.png |only Xcertainty-1.0.0/Xcertainty/vignettes/img/TL_output_wonky-1.png |only Xcertainty-1.0.0/Xcertainty/vignettes/img/TL_per_subject-1.png |only Xcertainty-1.0.0/Xcertainty/vignettes/img/bai-1.png |only Xcertainty-1.0.0/Xcertainty/vignettes/img/bai_dist-1.png |only Xcertainty-1.0.0/Xcertainty/vignettes/img/baro_vs_true_alt-1.png |only Xcertainty-1.0.0/Xcertainty/vignettes/img/body_vol-1.png |only Xcertainty-1.0.0/Xcertainty/vignettes/img/growth_curves-1.png |only Xcertainty-1.0.0/Xcertainty/vignettes/img/length&age-1.png |only Xcertainty-1.0.0/Xcertainty/vignettes/img/poster_vs_obs_alt_P4P-1.png |only Xcertainty-1.0.0/Xcertainty/vignettes/img/posterior_vs_obs_alt-1.png |only Xcertainty-1.0.0/Xcertainty/vignettes/img/std_widths-1.png |only Xcertainty-1.0.0/Xcertainty/vignettes/img/std_widths_all-1.png |only Xcertainty-1.0.1/Xcertainty/DESCRIPTION | 8 Xcertainty-1.0.1/Xcertainty/MD5 | 50 +- Xcertainty-1.0.1/Xcertainty/NEWS.md | 8 Xcertainty-1.0.1/Xcertainty/inst/doc/Xcertainty.Rmd | 163 ++++----- Xcertainty-1.0.1/Xcertainty/inst/doc/Xcertainty.html | 181 +++++----- Xcertainty-1.0.1/Xcertainty/inst/doc/Xcertainty_growth_curves.Rmd | 122 +++--- Xcertainty-1.0.1/Xcertainty/inst/doc/Xcertainty_growth_curves.html | 129 +++---- Xcertainty-1.0.1/Xcertainty/inst/doc/Xcertainty_informative_priors.Rmd | 137 +++---- Xcertainty-1.0.1/Xcertainty/inst/doc/Xcertainty_informative_priors.html | 149 ++++---- Xcertainty-1.0.1/Xcertainty/vignettes/Xcertainty.Rmd | 163 ++++----- Xcertainty-1.0.1/Xcertainty/vignettes/Xcertainty_growth_curves.Rmd | 122 +++--- Xcertainty-1.0.1/Xcertainty/vignettes/Xcertainty_informative_priors.Rmd | 137 +++---- Xcertainty-1.0.1/Xcertainty/vignettes/img/Xc_Fig1_posterior_vs_obs_alt-1.png |only Xcertainty-1.0.1/Xcertainty/vignettes/img/Xc_Fig2_TL_per_subject-1.png |only Xcertainty-1.0.1/Xcertainty/vignettes/img/Xc_Fig3_TL_dist-1.png |only Xcertainty-1.0.1/Xcertainty/vignettes/img/Xc_Fig4_bai-1.png |only Xcertainty-1.0.1/Xcertainty/vignettes/img/Xc_Fig5_body_vol-1.png |only Xcertainty-1.0.1/Xcertainty/vignettes/img/Xc_Fig6_std_widths-1.png |only Xcertainty-1.0.1/Xcertainty/vignettes/img/Xc_Fig7_std_widths_all-1.png |only Xcertainty-1.0.1/Xcertainty/vignettes/img/Xc_Fig8_bai_dist-1.png |only Xcertainty-1.0.1/Xcertainty/vignettes/img/Xc_Gr_growth_curves-1.png |only Xcertainty-1.0.1/Xcertainty/vignettes/img/Xc_Gr_length_age-1.png |only Xcertainty-1.0.1/Xcertainty/vignettes/img/Xc_Inf_Fig1_posterior_vs_obs_alt_P4P-1.png |only Xcertainty-1.0.1/Xcertainty/vignettes/img/Xc_Inf_Fig2_TL_output_wonky-1.png |only Xcertainty-1.0.1/Xcertainty/vignettes/img/Xc_Inf_Fig3_baro_vs_true_alt-1.png |only Xcertainty-1.0.1/Xcertainty/vignettes/img/Xc_Inf_Fig4_TL_output_informative-1.png |only 40 files changed, 698 insertions(+), 671 deletions(-)
Title: Machine Learning Immunogenicity and Vaccine Response Analysis
Description: Used for analyzing immune responses and predicting vaccine efficacy using machine learning and advanced data processing techniques. 'Immunaut' integrates both unsupervised and supervised learning methods, managing outliers and capturing immune response variability. It performs multiple rounds of predictive model testing to identify robust immunogenicity signatures that can predict vaccine responsiveness. The platform is designed to handle high-dimensional immune data, enabling researchers to uncover immune predictors and refine personalized vaccination strategies across diverse populations.
Author: Ivan Tomic [aut, cre, cph] ,
Adriana Tomic [aut, ctb, cph, fnd]
,
Stephanie Hao [aut]
Maintainer: Ivan Tomic <info@ivantomic.com>
Diff between immunaut versions 1.0.0 dated 2024-10-25 and 1.0.1 dated 2024-10-25
DESCRIPTION | 13 MD5 | 48 +- NAMESPACE | 20 R/functions.R | 761 +++++++++++++++++++++++++++--------- R/immunaut.R | 214 ++++++++-- R/utils.R | 186 ++++---- R/zzz.R | 3 README.md | 78 +-- man/auto_simon_ml.Rd | 36 + man/calculate_tsne.Rd | 16 man/castAllStringsToNA.Rd | 7 man/cluster_tsne_density.Rd | 12 man/cluster_tsne_hierarchical.Rd | 15 man/cluster_tsne_knn_louvain.Rd | 39 - man/cluster_tsne_mclust.Rd | 14 man/find_optimal_resolution.Rd | 42 - man/generate_demo_data.Rd | 2 man/immunaut.Rd | 98 ++-- man/isNumeric.Rd | 1 man/is_var_empty.Rd | 1 man/pick_best_cluster_modularity.Rd |only man/pick_best_cluster_overall.Rd |only man/pick_best_cluster_silhouette.Rd |only man/pick_best_cluster_simon.Rd |only man/preProcessData.Rd | 21 man/preProcessResample.Rd | 7 man/remove_outliers.Rd | 9 27 files changed, 1066 insertions(+), 577 deletions(-)
Title: Plotting Tools for Anyone Working in Deep Time
Description: Extends the functionality of other plotting packages (notably 'ggplot2')
to help facilitate the plotting of data over long time intervals, including,
but not limited to, geological, evolutionary, and ecological data. The
primary goal of 'deeptime' is to enable users to add highly customizable
timescales to their visualizations. Other functions are also included to
assist with other areas of deep time visualization.
Author: William Gearty [aut, cre]
Maintainer: William Gearty <willgearty@gmail.com>
Diff between deeptime versions 2.0.0 dated 2024-08-19 and 2.1.0 dated 2024-10-25
deeptime-2.0.0/deeptime/R/sysdata.rda |only deeptime-2.1.0/deeptime/DESCRIPTION | 14 deeptime-2.1.0/deeptime/MD5 | 122 +-- deeptime-2.1.0/deeptime/NAMESPACE | 13 deeptime-2.1.0/deeptime/NEWS.md | 327 ++++---- deeptime-2.1.0/deeptime/R/coord_geo_polar.R | 4 deeptime-2.1.0/deeptime/R/coord_geo_radial.R | 6 deeptime-2.1.0/deeptime/R/data.R | 25 deeptime-2.1.0/deeptime/R/deeptime-package.R | 2 deeptime-2.1.0/deeptime/R/facet_color.R | 369 +++++++++- deeptime-2.1.0/deeptime/R/get_scale_data.R | 94 +- deeptime-2.1.0/deeptime/R/gggeo_scale.R | 6 deeptime-2.1.0/deeptime/R/gggeo_scale_old.R | 2 deeptime-2.1.0/deeptime/R/patterns.R | 3 deeptime-2.1.0/deeptime/data/eons.rda |binary deeptime-2.1.0/deeptime/data/epochs.rda |binary deeptime-2.1.0/deeptime/data/eras.rda |binary deeptime-2.1.0/deeptime/data/periods.rda |binary deeptime-2.1.0/deeptime/data/stages.rda |binary deeptime-2.1.0/deeptime/inst/CITATION |only deeptime-2.1.0/deeptime/inst/doc/coord.html | 8 deeptime-2.1.0/deeptime/inst/doc/coord_geo.html | 20 deeptime-2.1.0/deeptime/inst/doc/geo.html | 16 deeptime-2.1.0/deeptime/inst/doc/ggarrange2.html | 8 deeptime-2.1.0/deeptime/inst/doc/phylogenies.html | 16 deeptime-2.1.0/deeptime/inst/doc/time.html | 16 deeptime-2.1.0/deeptime/inst/doc/traits.html | 8 deeptime-2.1.0/deeptime/man/eons.Rd | 7 deeptime-2.1.0/deeptime/man/epochs.Rd | 7 deeptime-2.1.0/deeptime/man/eras.Rd | 7 deeptime-2.1.0/deeptime/man/facet_grid_color.Rd | 28 deeptime-2.1.0/deeptime/man/facet_nested_color.Rd |only deeptime-2.1.0/deeptime/man/facet_nested_wrap_color.Rd |only deeptime-2.1.0/deeptime/man/facet_wrap_color.Rd | 29 deeptime-2.1.0/deeptime/man/geo_pattern.Rd | 2 deeptime-2.1.0/deeptime/man/get_scale_data.Rd | 125 ++- deeptime-2.1.0/deeptime/man/gggeo_scale.Rd | 4 deeptime-2.1.0/deeptime/man/gggeo_scale_old.Rd | 2 deeptime-2.1.0/deeptime/man/periods.Rd | 7 deeptime-2.1.0/deeptime/man/stages.Rd | 7 deeptime-2.1.0/deeptime/tests/testthat/Rplots.pdf |binary deeptime-2.1.0/deeptime/tests/testthat/_snaps/coord_geo/custom-discrete-scale-new.svg | 2 deeptime-2.1.0/deeptime/tests/testthat/_snaps/coord_geo/geom-fit-text-new.svg | 2 deeptime-2.1.0/deeptime/tests/testthat/_snaps/coord_geo/scale-on-all-facets-new.svg | 6 deeptime-2.1.0/deeptime/tests/testthat/_snaps/coord_geo/scale-on-discrete-axis-new.svg | 2 deeptime-2.1.0/deeptime/tests/testthat/_snaps/coord_geo/scale-on-only-one-facet-new.svg | 2 deeptime-2.1.0/deeptime/tests/testthat/_snaps/coord_geo/stacked-scales-new.svg | 4 deeptime-2.1.0/deeptime/tests/testthat/_snaps/facet_color/facet-grid-color-blue-labels-new.svg |only deeptime-2.1.0/deeptime/tests/testthat/_snaps/facet_color/facet-grid-color-lab-colors-new.svg |only deeptime-2.1.0/deeptime/tests/testthat/_snaps/facet_color/facet-grid-color-new.svg | 12 deeptime-2.1.0/deeptime/tests/testthat/_snaps/facet_color/facet-grid-color-triassic-blue-new.svg |only deeptime-2.1.0/deeptime/tests/testthat/_snaps/facet_color/facet-grid-color-with-function-new.svg | 12 deeptime-2.1.0/deeptime/tests/testthat/_snaps/facet_color/facet-grid-color-with-named-vector-new.svg | 12 deeptime-2.1.0/deeptime/tests/testthat/_snaps/facet_color/facet-nested-color-new.svg |only deeptime-2.1.0/deeptime/tests/testthat/_snaps/facet_color/facet-nested-wrap-color-new.svg |only deeptime-2.1.0/deeptime/tests/testthat/_snaps/facet_color/facet-wrap-color-blue-labels-new.svg |only deeptime-2.1.0/deeptime/tests/testthat/_snaps/facet_color/facet-wrap-color-new.svg | 12 deeptime-2.1.0/deeptime/tests/testthat/_snaps/ggarrange2/double-ggarrange2-new.svg | 4 deeptime-2.1.0/deeptime/tests/testthat/_snaps/guides/custom-discrete-guide-new.svg | 2 deeptime-2.1.0/deeptime/tests/testthat/_snaps/guides/guide-on-discrete-axis-new.svg | 2 deeptime-2.1.0/deeptime/tests/testthat/_snaps/guides/guide-with-facets-new.svg | 6 deeptime-2.1.0/deeptime/tests/testthat/_snaps/guides/guide-with-geom-fit-text-new.svg | 2 deeptime-2.1.0/deeptime/tests/testthat/_snaps/guides/stacked-guides-new.svg | 2 deeptime-2.1.0/deeptime/tests/testthat/_snaps/scales/scale-color-geo-new.svg | 6 deeptime-2.1.0/deeptime/tests/testthat/_snaps/scales/scale-discrete-geo-new.svg | 6 deeptime-2.1.0/deeptime/tests/testthat/test-facet_color.R | 130 +++ deeptime-2.1.0/deeptime/tests/testthat/test-get_scale_data.R | 11 67 files changed, 1114 insertions(+), 427 deletions(-)
Title: Adaptive Bootstrap Inference for Mediation Analysis with
Enhanced Statistical Power
Description: Assess whether and how a specific continuous or categorical exposure affects the outcome of interest through one- or multi-dimensional mediators using an adaptive bootstrap (AB) approach. The AB method allows to make inference for composite null hypotheses of no mediation effect, providing valid type I error control and thus optimizes statistical power. For more technical details, refer to He, Song and Xu (2024) <doi:10.1093/jrsssb/qkad129>.
Author: Canyi Chen [aut, cre] ,
Yinqiu He [aut],
Gongjun Xu [aut],
Peter X.-K. Song [aut, cph]
Maintainer: Canyi Chen <cychen.stats@outlook.com>
Diff between abima versions 1.0 dated 2024-10-25 and 1.1 dated 2024-10-25
DESCRIPTION | 11 ++++++----- MD5 | 18 +++++++++--------- NEWS.md | 6 +++++- R/abYlm.Mglm.R | 30 +++++++++++++++--------------- R/abYlm.Mlm.R | 29 ++++++++++++++--------------- R/generate_all_data.R | 28 +++++++++++++--------------- README.md | 35 ++++++++++++++++++----------------- man/abYlm.Mglm.Rd | 30 +++++++++++++++--------------- man/abYlm.Mlm.Rd | 29 ++++++++++++++--------------- man/generate_all_data.Rd | 28 ++++++++++++---------------- 10 files changed, 121 insertions(+), 123 deletions(-)
Title: Create and Evaluate NONMEM Models in a Project Context
Description: Systematically creates and modifies NONMEM(R) control streams. Harvests
NONMEM output, builds run logs, creates derivative data, generates diagnostics.
NONMEM (ICON Development Solutions <https://www.iconplc.com/>) is software for
nonlinear mixed effects modeling. See 'package?nonmemica'.
Author: Tim Bergsma [aut, cre]
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Diff between nonmemica versions 1.0.8 dated 2023-09-20 and 1.0.11 dated 2024-10-25
DESCRIPTION | 14 + MD5 | 320 +++++++++++++++++++-------------------- R/init.R | 4 R/likebut.R | 10 - R/path.R | 2 R/superset.R | 10 - build/vignette.rds |binary inst/doc/parameter-table.html | 4 man/as.bootstrap.bootstrap.Rd | 4 man/as.bootstrap.numeric.Rd | 4 man/as.character.items.Rd | 2 man/as.character.model.Rd | 2 man/as.character.problem.Rd | 2 man/as.data.frame.halfmatrix.Rd | 10 - man/as.halfmatrix.Rd | 8 man/as.halfmatrix.default.Rd | 10 - man/as.halfmatrix.halfmatrix.Rd | 10 - man/as.init.init.Rd | 4 man/as.init.numeric.Rd | 4 man/as.inits.list.Rd | 4 man/as.inits.numeric.Rd | 4 man/as.matrices.inits.Rd | 4 man/as.matrices.records.Rd | 4 man/as.matrix.halfmatrix.Rd | 10 - man/as.model.character.Rd | 2 man/as.model.numeric.Rd | 2 man/as.problem.Rd | 4 man/as.xml_document.Rd | 8 man/as.xml_document.character.Rd | 6 man/as.xml_document.numeric.Rd | 6 man/as_nms_canonical.Rd | 10 - man/as_nms_nonmem.Rd | 10 - man/as_nms_pmx.Rd | 10 - man/as_nms_psn.Rd | 10 - man/comments.inits.Rd | 4 man/comments.items.Rd | 4 man/comments.model.Rd | 4 man/comwidth.character.Rd | 4 man/comwidth.inits.Rd | 4 man/comwidth.items.Rd | 4 man/datafile.Rd | 6 man/datafile.character.Rd | 8 man/datafile.numeric.Rd | 8 man/definitions.definitions.Rd | 4 man/definitions.numeric.Rd | 4 man/enclose.Rd | 2 man/errors.character.Rd | 4 man/errors.numeric.Rd | 4 man/estimates.character.Rd | 4 man/estimates.numeric.Rd | 4 man/fixed-set-.init.Rd | 6 man/fixed-set-.inits.Rd | 6 man/fixed-set-.model.Rd | 6 man/fixed-set.Rd | 6 man/fixed.Rd | 12 - man/fixed.init.Rd | 8 man/fixed.model.Rd | 8 man/format.items.Rd | 2 man/format.model.Rd | 2 man/generalize.Rd | 10 - man/grapes-contains-grapes.Rd | 2 man/half.Rd | 8 man/half.matrix.Rd | 8 man/ignored.Rd | 10 - man/initial-set-.model.Rd | 4 man/initial-set.Rd | 4 man/initial.Rd | 4 man/initial.model.Rd | 4 man/is.square.Rd | 8 man/is.square.matrix.Rd | 8 man/locf.Rd | 8 man/lower-set-.model.Rd | 4 man/lower-set.Rd | 4 man/lower.Rd | 4 man/lower.model.Rd | 4 man/meta.Rd | 8 man/meta.character.Rd | 10 - man/meta.numeric.Rd | 10 - man/metaplot.character.Rd | 10 - man/metaplot.numeric.Rd | 10 - man/metaplot_character.Rd | 10 - man/metasuperset.Rd | 10 - man/modeldir.Rd | 8 man/modelfile.Rd | 8 man/modelpath.Rd | 6 man/modelpath.character.Rd | 8 man/modelpath.numeric.Rd | 8 man/ninput.Rd | 8 man/ninput.character.Rd | 10 - man/ninput.numeric.Rd | 10 - man/nms_canonical.Rd | 8 man/nms_canonical.character.Rd | 10 - man/nms_canonical.model.Rd | 10 - man/nms_canonical.nms_nonmem.Rd | 10 - man/nms_canonical.nms_pmx.Rd | 10 - man/nms_canonical.numeric.Rd | 10 - man/nms_nonmem.Rd | 8 man/nms_nonmem.character.Rd | 10 - man/nms_nonmem.model.Rd | 10 - man/nms_nonmem.nms_canonical.Rd | 10 - man/nms_nonmem.nms_pmx.Rd | 10 - man/nms_nonmem.numeric.Rd | 10 - man/nms_pmx.Rd | 8 man/nms_pmx.nms_canonical.Rd | 10 - man/nms_pmx.nms_nonmem.Rd | 10 - man/nms_psn.Rd | 6 man/nms_psn.character.Rd | 10 - man/nms_psn.model.Rd | 10 - man/nms_psn.numeric.Rd | 10 - man/nonmemica.Rd | 6 man/offdiag.Rd | 8 man/offdiag.halfmatrix.Rd | 8 man/ord.Rd | 8 man/ord.halfmatrix.Rd | 10 - man/ord.matrix.Rd | 10 - man/padded.Rd | 2 man/parameters.character.Rd | 4 man/parameters.numeric.Rd | 4 man/parens.Rd | 2 man/partab.character.Rd | 4 man/partab.numeric.Rd | 4 man/pool.Rd | 2 man/print.halfmatrix.Rd | 12 - man/print.items.Rd | 2 man/print.model.Rd | 2 man/problem.character.Rd | 4 man/problem.numeric.Rd | 4 man/problem_.Rd | 4 man/psn_options.Rd | 8 man/read.model.Rd | 2 man/runhead.Rd | 2 man/runlog.character.Rd | 4 man/runlog.numeric.Rd | 4 man/shuffle.Rd | 10 - man/specfile.Rd | 4 man/specfile.character.Rd | 8 man/specfile.numeric.Rd | 8 man/sub-.model.Rd | 2 man/sub-sub-.model.Rd | 2 man/superset.Rd | 8 man/superset.character.Rd | 10 - man/superset.numeric.Rd | 10 - man/superspec.Rd | 6 man/superspec.character.Rd | 10 - man/superspec.numeric.Rd | 10 - man/text2decimal.Rd | 2 man/tweak.Rd | 2 man/tweak.default.Rd | 6 man/tweak.init.Rd | 4 man/tweak.inits.Rd | 4 man/tweak.model.Rd | 4 man/updated.character.Rd | 4 man/updated.numeric.Rd | 4 man/upper-set-.model.Rd | 4 man/upper-set.Rd | 4 man/upper.Rd | 4 man/upper.model.Rd | 4 man/write.model.Rd | 2 man/xpath.Rd | 2 man/xpath.default.Rd | 6 man/xpath.xml_document.Rd | 6 161 files changed, 669 insertions(+), 655 deletions(-)
Title: Tabulate Descriptive Statistics in Multiple Formats
Description: Creates a table of descriptive statistics
for factor and numeric columns in a data frame. Displays
these by groups, if any. Highly customizable, with support
for 'html' and 'pdf' provided by 'kableExtra'. Respects
original column order, column labels, and factor level order.
See ?tablet.data.frame and vignettes.
Author: Tim Bergsma [aut, cre]
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Diff between tablet versions 0.6.8 dated 2024-03-29 and 0.6.11 dated 2024-10-25
DESCRIPTION | 14 ++++++++----- MD5 | 35 ++++++++++++++++----------------- R/tablet.R | 11 +++++++--- R/tablette.R | 22 ++++++++++++++++---- R/xtable.R | 1 inst/doc/tablet-introduction-html.html | 4 +-- inst/doc/tablet-introduction-pdf.pdf |binary man/as_kable.tablet.Rd | 2 - man/as_tablet.Rd | 2 - man/as_tablet.data.frame.Rd | 2 - man/escape_latex.Rd | 2 - man/escape_latex.default.Rd | 4 +-- man/escape_latex.latex.Rd | 4 +-- man/header_rows.Rd | 2 - man/header_rows.tablet.Rd | 2 - man/tablet.tablette.Rd | 4 +-- man/tablette.tablet.Rd | 4 +-- tests/testthat/017.rds |only tests/testthat/test-tablet.R | 22 ++++++++++++++++++++ 19 files changed, 92 insertions(+), 45 deletions(-)
Title: Procedures for Gaussian and Non Gaussian Geostatistical (Large)
Data Analysis
Description: Functions for Gaussian and Non Gaussian (bivariate) spatial and spatio-temporal data analysis are provided for a) (fast) simulation of random fields, b) inference for random fields using standard likelihood and a likelihood approximation method called weighted composite likelihood based on pairs and b) prediction using (local) best linear unbiased prediction. Weighted composite likelihood can be very efficient for estimating massive datasets. Both regression and spatial (temporal) dependence analysis can be jointly performed. Flexible covariance models for spatial and spatial-temporal data on Euclidean domains and spheres are provided. There are also many useful functions for plotting and performing diagnostic analysis. Different non Gaussian random fields can be considered in the analysis. Among them, random fields with marginal distributions such as Skew-Gaussian, Student-t, Tukey-h, Sin-Arcsin, Two-piece, Weibull, Gamma, Log-Gaussian, Binomial, Negative Binomial and Poisson. Se [...truncated...]
Author: Moreno Bevilacqua [aut, cre] ,
Victor Morales-Onate [aut] ,
Christian Caamano-Carrillo [aut]
Maintainer: Moreno Bevilacqua <moreno.bevilacqua89@gmail.com>
Diff between GeoModels versions 2.0.6 dated 2024-10-07 and 2.0.7 dated 2024-10-25
DESCRIPTION | 10 MD5 | 60 +- NAMESPACE | 5 R/GeoCV.R | 32 - R/GeoCompositeLik2.R | 545 ++++++++++---------------- R/GeoCovariogram.r | 84 ++-- R/GeoCovmatrix.r | 15 R/GeoKrig.r | 19 R/GeoLik.r | 43 +- R/GeoNeighbSelect.R |only R/GeoSim.r | 6 R/GeoSimapprox.r | 28 + R/GeoWls.r | 15 R/Geovarestbootstrap.R | 6 R/TB.R | 264 +++++++++--- R/Utility.r | 6 man/GeoCovariogram.Rd | 4 man/GeoCovmatrix.Rd | 4 man/GeoFit.Rd | 29 - man/GeoFit2.Rd | 7 man/GeoNeighbSelect.Rd |only man/GeoSim.Rd | 3 man/GeoSimapprox.Rd | 6 man/GeoWls.Rd | 4 src/CompositeLikelihood2.c | 18 src/CompositeLikelihoodCond2.c | 55 ++ src/CorrelationFunction.c | 31 - src/Distributions.c | 207 ++++++--- src/GeoModels_init.c | 19 src/TB.c | 849 ++++++++++++++++++++--------------------- src/header.h | 7 src/specfun.f | 3 32 files changed, 1297 insertions(+), 1087 deletions(-)
Title: Read, Tidy, and Display Data from Microtiter Plates
Description: Tools for interacting with data from experiments done in microtiter
plates. Easily read in plate-shaped data and convert it to tidy format,
combine plate-shaped data with tidy data, and view tidy data in plate shape.
Author: Sean Hughes [aut, cre]
Maintainer: Sean Hughes <smhughes@uw.edu>
Diff between plater versions 1.0.4 dated 2022-02-11 and 1.0.5 dated 2024-10-25
plater-1.0.4/plater/man/plater.Rd |only plater-1.0.5/plater/DESCRIPTION | 9 plater-1.0.5/plater/MD5 | 19 plater-1.0.5/plater/NEWS.md | 3 plater-1.0.5/plater/R/add_plate.R | 2 plater-1.0.5/plater/R/plater-package.R |only plater-1.0.5/plater/R/plater.R | 5 plater-1.0.5/plater/build/vignette.rds |binary plater-1.0.5/plater/inst/CITATION | 7 plater-1.0.5/plater/inst/doc/plater-basics.R | 2 plater-1.0.5/plater/inst/doc/plater-basics.html | 536 ++++++++++++++---------- plater-1.0.5/plater/man/plater-package.Rd |only 12 files changed, 352 insertions(+), 231 deletions(-)
Title: Recommended Learners for 'mlr3'
Description: Recommended Learners for 'mlr3'. Extends 'mlr3' with
interfaces to essential machine learning packages on CRAN. This
includes, but is not limited to: (penalized) linear and logistic
regression, linear and quadratic discriminant analysis, k-nearest
neighbors, naive Bayes, support vector machines, and gradient
boosting.
Author: Michel Lang [aut] ,
Quay Au [aut] ,
Stefan Coors [aut] ,
Patrick Schratz [aut] ,
Marc Becker [cre, aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3learners versions 0.7.0 dated 2024-06-28 and 0.8.0 dated 2024-10-25
DESCRIPTION | 10 MD5 | 54 ++-- NEWS.md | 14 + R/LearnerClassifLogReg.R | 10 R/LearnerClassifNnet.R | 2 R/LearnerClassifRanger.R | 8 R/LearnerClassifXgboost.R | 153 +++++++++++-- R/LearnerRegrKM.R | 6 R/LearnerRegrNnet.R | 6 R/LearnerRegrRanger.R | 29 +- R/LearnerRegrXgboost.R | 57 +++-- R/helpers_glmnet.R | 2 build/partial.rdb |binary inst/paramtest/test_paramtest_classif.ranger.R | 11 inst/paramtest/test_paramtest_classif.xgboost.R | 15 - inst/paramtest/test_paramtest_regr.ranger.R | 9 inst/paramtest/test_paramtest_regr.xgboost.R | 15 - man/mlr_learners_classif.log_reg.Rd | 6 man/mlr_learners_classif.xgboost.Rd | 15 - man/mlr_learners_regr.ranger.Rd | 3 man/mlr_learners_regr.xgboost.Rd | 15 - tests/testthat/test_classif_glmnet.R | 4 tests/testthat/test_classif_ranger.R | 2 tests/testthat/test_classif_xgboost.R | 273 +++++++++++++++++++++++- tests/testthat/test_regr_glmnet.R | 2 tests/testthat/test_regr_nnet.R | 1 tests/testthat/test_regr_ranger.R | 20 + tests/testthat/test_regr_xgboost.R | 142 ++++++++++++ 28 files changed, 735 insertions(+), 149 deletions(-)
Title: Feature Selection for 'mlr3'
Description: Feature selection package of the 'mlr3' ecosystem. It selects
the optimal feature set for any 'mlr3' learner. The package works with
several optimization algorithms e.g. Random Search, Recursive Feature
Elimination, and Genetic Search. Moreover, it can automatically
optimize learners and estimate the performance of optimized feature
sets with nested resampling.
Author: Marc Becker [aut, cre] ,
Patrick Schratz [aut] ,
Michel Lang [aut] ,
Bernd Bischl [aut] ,
John Zobolas [aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3fselect versions 1.1.1 dated 2024-10-15 and 1.2.0 dated 2024-10-25
DESCRIPTION | 10 ++-- MD5 | 33 +++++++------- NEWS.md | 5 ++ R/AutoFSelector.R | 12 ++++- R/CallbackBatchFSelect.R | 76 +++++++++++++++++++++------------- R/ContextBatchFSelect.R | 7 +++ R/FSelectInstanceBatchMultiCrit.R | 6 +- R/FSelectInstanceBatchSingleCrit.R | 6 +- R/FSelectorBatchRFE.R | 3 - R/mlr_callbacks.R | 52 +++++++++++++++++++++++ R/zzz.R | 2 man/CallbackBatchFSelect.Rd | 10 ++++ man/ContextBatchFSelect.Rd | 8 +++ man/FSelectInstanceBatchMultiCrit.Rd | 5 +- man/FSelectInstanceBatchSingleCrit.Rd | 5 +- man/callback_batch_fselect.Rd | 56 +++++++++++++------------ man/mlr3fselect.internal_tuning.Rd |only tests/testthat/test_mlr_callbacks.R | 46 ++++++++++++++++++++ 18 files changed, 258 insertions(+), 84 deletions(-)
Title: Translate 'iatgen' Generated QSF Files
Description: Automates translating the instructions of 'iatgen' generated qsf
(Qualtrics survey files) to other languages using either officially
supported or user-supplied translations (for tutorial see Santos
et al., 2023 <doi:10.17504/protocols.io.kxygx34jdg8j/v1>).
Author: Michal Kouril [aut, cre] ,
Joao O. Santos [aut]
Maintainer: Michal Kouril <Michal.Kouril@cchmc.org>
Diff between tr.iatgen versions 1.0.0 dated 2024-02-07 and 1.1.0 dated 2024-10-25
DESCRIPTION | 10 +++++----- MD5 | 13 +++++++------ NEWS.md | 3 +++ README.md | 6 ++++-- inst/doc/translating-iatgen-qsf.R | 2 +- inst/doc/translating-iatgen-qsf.html | 2 +- inst/langs/en_es.csv |only inst/langs/langs.csv | 5 +++-- 8 files changed, 24 insertions(+), 17 deletions(-)
Title: Sliding Window Functions
Description: Provides type-stable rolling window functions over any R data
type. Cumulative and expanding windows are also supported. For more
advanced usage, an index can be used as a secondary vector that
defines how sliding windows are to be created.
Author: Davis Vaughan [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Davis Vaughan <davis@posit.co>
Diff between slider versions 0.3.1 dated 2023-10-12 and 0.3.2 dated 2024-10-25
DESCRIPTION | 12 +++--- LICENSE | 2 - MD5 | 48 +++++++++++++------------- NEWS.md | 8 ++++ README.md | 2 - build/vignette.rds |binary man/hop_index.Rd | 8 ++-- man/hop_index2.Rd | 8 ++-- man/slide.Rd | 2 - man/slide2.Rd | 2 - man/slide_index.Rd | 5 +- man/slide_index2.Rd | 5 +- man/slide_period.Rd | 2 - man/slide_period2.Rd | 2 - man/slider-package.Rd | 2 - man/summary-index.Rd | 3 + src/assign.h | 65 ++++++++++++++++++++++++++---------- src/hop.c | 28 ++++++--------- src/index.c | 38 ++++++++------------- src/slide.c | 24 +++++-------- src/slider.h | 10 ----- src/summary-slide.c | 4 +- src/utils.c | 24 ++++++++++++- src/utils.h | 2 + tests/testthat/_snaps/conditions.md | 2 - 25 files changed, 174 insertions(+), 134 deletions(-)
Title: Microsoft Finance Time Series Forecasting Framework
Description: Automated time series forecasting developed by Microsoft Finance. The Microsoft Finance Time
Series Forecasting Framework, aka Finn, can be used to forecast any component of the income
statement, balance sheet, or any other area of interest by finance. Any numerical quantity over time,
Finn can be used to forecast it. While it can be applied outside of the finance domain, Finn was built
to meet the needs of financial analysts to better forecast their businesses within a company, and has
a lot of built in features that are specific to the needs of financial forecasters. Happy forecasting!
Author: Mike Tokic [aut, cre] ,
Aadharsh Kannan [aut]
Maintainer: Mike Tokic <mftokic@gmail.com>
Diff between finnts versions 0.4.0 dated 2023-12-01 and 0.5.0 dated 2024-10-25
DESCRIPTION | 14 MD5 | 175 +- NAMESPACE | 52 NEWS.md | 22 R/ensemble_models.R | 43 R/feature_selection.R | 357 +++-- R/final_models.R | 133 +- R/forecast_time_series.R | 9 R/hierarchy.R | 372 +++++ R/input_checks.R | 26 R/models.R | 317 +++-- R/multistep_cubist.R |only R/multistep_glmnet.R |only R/multistep_helper.R |only R/multistep_mars.R |only R/multistep_svm_poly.R |only R/multistep_svm_rbf.R |only R/multistep_xgboost.R |only R/parallel_util.R | 2 R/prep_data.R | 517 ++++---- R/prep_models.R | 60 R/read_write_data.R | 144 ++ R/run_info.R | 7 R/train_models.R | 84 - R/utility.R | 25 build/vignette.rds |binary inst/doc/back-testing-and-hyperparameter-tuning.R | 39 inst/doc/back-testing-and-hyperparameter-tuning.Rmd | 35 inst/doc/back-testing-and-hyperparameter-tuning.html | 77 - inst/doc/best-model-selection.R | 31 inst/doc/best-model-selection.Rmd | 27 inst/doc/best-model-selection.html | 4 inst/doc/external-regressors.R | 14 inst/doc/external-regressors.Rmd | 10 inst/doc/external-regressors.html | 2 inst/doc/feature-engineering.R | 71 - inst/doc/feature-engineering.Rmd | 65 - inst/doc/feature-engineering.html | 249 ++- inst/doc/feature-selection.R | 2 inst/doc/finnts.R | 51 inst/doc/finnts.Rmd | 27 inst/doc/finnts.html | 91 - inst/doc/forecast-components.R | 65 - inst/doc/forecast-components.Rmd | 53 inst/doc/forecast-components.html | 212 +-- inst/doc/hierarchical-forecasting.R | 22 inst/doc/hierarchical-forecasting.Rmd | 22 inst/doc/hierarchical-forecasting.html | 26 inst/doc/models-used-in-finnts.R | 10 inst/doc/models-used-in-finnts.Rmd | 23 inst/doc/models-used-in-finnts.html | 1199 +++++-------------- inst/doc/parallel-processing.R | 10 inst/doc/parallel-processing.Rmd | 20 inst/doc/parallel-processing.html | 41 inst/doc/tips-for-production.R | 2 man/cubist_multistep.Rd |only man/cubist_multistep_fit_impl.Rd |only man/cubist_multistep_predict_impl.Rd |only man/final_models.Rd | 3 man/glmnet_multistep.Rd |only man/glmnet_multistep_fit_impl.Rd |only man/glmnet_multistep_predict_impl.Rd |only man/mars_multistep.Rd |only man/mars_multistep_fit_impl.Rd |only man/mars_multistep_predict_impl.Rd |only man/predict.cubist_multistep_fit_impl.Rd |only man/predict.glmnet_multistep_fit_impl.Rd |only man/predict.mars_multistep_fit_impl.Rd |only man/predict.svm_poly_multistep_fit_impl.Rd |only man/predict.svm_rbf_multistep_fit_impl.Rd |only man/predict.xgboost_multistep_fit_impl.Rd |only man/prep_data.Rd | 7 man/print.cubist_multistep.Rd |only man/print.cubist_multistep_fit_impl.Rd |only man/print.glmnet_multistep.Rd |only man/print.glmnet_multistep_fit_impl.Rd |only man/print.mars_multistep.Rd |only man/print.mars_multistep_fit_impl.Rd |only man/print.svm_poly_multistep.Rd |only man/print.svm_poly_multistep_fit_impl.Rd |only man/print.svm_rbf_multistep.Rd |only man/print.svm_rbf_multistep_fit_impl.Rd |only man/print.xgboost_multistep.Rd |only man/print.xgboost_multistep_fit_impl.Rd |only man/svm_poly_multistep.Rd |only man/svm_poly_multistep_fit_impl.Rd |only man/svm_poly_multistep_predict_impl.Rd |only man/svm_rbf_multistep.Rd |only man/svm_rbf_multistep_fit_impl.Rd |only man/svm_rbf_multistep_predict_impl.Rd |only man/translate.cubist_multistep.Rd |only man/translate.glmnet_multistep.Rd |only man/translate.mars_multistep.Rd |only man/translate.svm_poly_multistep.Rd |only man/translate.svm_rbf_multistep.Rd |only man/translate.xgboost_multistep.Rd |only man/update.cubist_multistep.Rd |only man/update.glmnet_multistep.Rd |only man/update.mars_multistep.Rd |only man/update.svm_poly_multistep.Rd |only man/update.svm_rbf_multistep.Rd |only man/update.xgboost_multistep.Rd |only man/xgboost_multistep.Rd |only man/xgboost_multistep_fit_impl.Rd |only man/xgboost_multistep_predict_impl.Rd |only tests/testthat/test-forecast_time_series.R | 1 tests/testthat/test-hierarchical.R |only tests/testthat/test-multistep_horizon.R |only vignettes/back-testing-and-hyperparameter-tuning.Rmd | 35 vignettes/best-model-selection.Rmd | 27 vignettes/external-regressors.Rmd | 10 vignettes/feature-engineering.Rmd | 65 - vignettes/finnts.Rmd | 27 vignettes/forecast-components.Rmd | 53 vignettes/hierarchical-forecasting.Rmd | 22 vignettes/models-used-in-finnts.Rmd | 23 vignettes/parallel-processing.Rmd | 20 117 files changed, 2874 insertions(+), 2278 deletions(-)
Title: Systematically Run R CMD Checks
Description: Systematically Run R checks against multiple packages. Checks are run in
parallel with strategies to minimize dependency installation. Provides
out of the box interface for running reverse dependency check.
Author: Szymon Maksymiuk [cre, aut] ,
Doug Kelkhoff [aut] ,
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Szymon Maksymiuk <sz.maksymiuk@gmail.com>
Diff between checked versions 0.2.0 dated 2024-07-25 and 0.2.4 dated 2024-10-25
checked-0.2.0/checked/R/setup.R |only checked-0.2.0/checked/man/checked-package.Rd |only checked-0.2.0/checked/man/checks_df.Rd |only checked-0.2.0/checked/man/dep_graph_which_satisfied.Rd |only checked-0.2.4/checked/DESCRIPTION | 19 checked-0.2.4/checked/MD5 | 142 ++++-- checked-0.2.4/checked/NAMESPACE | 21 checked-0.2.4/checked/NEWS.md | 60 ++ checked-0.2.4/checked/R/check.R | 219 +++++---- checked-0.2.4/checked/R/check_design.R | 152 ++++-- checked-0.2.4/checked/R/check_process.R | 47 -- checked-0.2.4/checked/R/checks_df.R | 227 ++++++--- checked-0.2.4/checked/R/cli.R | 25 + checked-0.2.4/checked/R/install.R | 60 +- checked-0.2.4/checked/R/next_task.R | 24 - checked-0.2.4/checked/R/options.R | 67 ++ checked-0.2.4/checked/R/package_spec.R | 10 checked-0.2.4/checked/R/reporter.R | 85 ++- checked-0.2.4/checked/R/reporter_ansi_tty.R | 42 - checked-0.2.4/checked/R/reporter_basic_tty.R | 6 checked-0.2.4/checked/R/reporter_null.R |only checked-0.2.4/checked/R/results.R | 171 ++++--- checked-0.2.4/checked/R/run.R | 20 checked-0.2.4/checked/R/task_graph.R | 84 ++- checked-0.2.4/checked/R/task_spec.R | 64 +- checked-0.2.4/checked/R/utils-ansi.R | 1 checked-0.2.4/checked/R/utils-cli.R |only checked-0.2.4/checked/R/utils-enums.R |only checked-0.2.4/checked/R/utils-paths.R |only checked-0.2.4/checked/R/utils-pkg-source.R |only checked-0.2.4/checked/R/utils.R | 233 ---------- checked-0.2.4/checked/README.md | 38 + checked-0.2.4/checked/man/DB_COLNAMES.Rd |only checked-0.2.4/checked/man/DEP.Rd |only checked-0.2.4/checked/man/DEP_STRONG.Rd |only checked-0.2.4/checked/man/STATUS.Rd |only checked-0.2.4/checked/man/ansi.Rd | 1 checked-0.2.4/checked/man/check_design.Rd | 54 +- checked-0.2.4/checked/man/check_dev_rev_deps.Rd |only checked-0.2.4/checked/man/check_dir.Rd |only checked-0.2.4/checked/man/check_functions.Rd | 110 ---- checked-0.2.4/checked/man/check_pkgs.Rd |only checked-0.2.4/checked/man/check_rev_deps.Rd |only checked-0.2.4/checked/man/check_task_spec.Rd |only checked-0.2.4/checked/man/checked-task-df.Rd |only checked-0.2.4/checked/man/checks_capture.Rd | 3 checked-0.2.4/checked/man/checks_simplify.Rd | 1 checked-0.2.4/checked/man/cli.Rd |only checked-0.2.4/checked/man/custom_install_task_spec.Rd |only checked-0.2.4/checked/man/devnull.Rd | 3 checked-0.2.4/checked/man/figures/README/ansi-tty-example-dark.svg | 2 checked-0.2.4/checked/man/figures/README/ansi-tty-example.svg | 2 checked-0.2.4/checked/man/install_task_spec.Rd |only checked-0.2.4/checked/man/new_check_design.Rd |only checked-0.2.4/checked/man/options.Rd |only checked-0.2.4/checked/man/options_params.Rd |only checked-0.2.4/checked/man/package_spec.Rd | 1 checked-0.2.4/checked/man/print.checked_results.Rd | 27 - checked-0.2.4/checked/man/reporters-internal.Rd |only checked-0.2.4/checked/man/reporters.Rd |only checked-0.2.4/checked/man/results.Rd | 22 checked-0.2.4/checked/man/results_to_file.Rd |only checked-0.2.4/checked/man/rev_dep_check_tasks_df.Rd |only checked-0.2.4/checked/man/revdep_check_task_spec.Rd |only checked-0.2.4/checked/man/run.Rd | 16 checked-0.2.4/checked/man/silent_spinner.Rd | 3 checked-0.2.4/checked/man/source_check_tasks_df.Rd |only checked-0.2.4/checked/man/task_graph_create.Rd | 1 checked-0.2.4/checked/man/task_graph_neighborhoods.Rd | 1 checked-0.2.4/checked/man/task_graph_sort.Rd | 1 checked-0.2.4/checked/man/task_graph_which_satisfied.Rd |only checked-0.2.4/checked/man/task_spec.Rd | 63 -- checked-0.2.4/checked/man/throttle.Rd | 1 checked-0.2.4/checked/tests/testthat/test-check-reverse.R |only checked-0.2.4/checked/tests/testthat/test-check.R | 55 ++ checked-0.2.4/checked/tests/testthat/test-checks_df.R | 139 ++++- checked-0.2.4/checked/tests/testthat/test-results.R |only checked-0.2.4/checked/tests/testthat/testing_pkgs/revdeps |only 78 files changed, 1348 insertions(+), 975 deletions(-)
Title: Checks for Various Computing Environments
Description: A collection of lightweight functions that can be used to
determine the computing environment in which your code is running.
This includes operating systems, continuous integration (CI)
environments, containers, and more.
Author: Brian Connelly [aut, cre, cph]
,
Mark Padgham [ctb] ,
Lluis Revilla Sancho [ctb]
Maintainer: Brian Connelly <bdc@bconnelly.net>
Diff between ami versions 0.1.1 dated 2024-06-16 and 0.2.0 dated 2024-10-25
DESCRIPTION | 27 ++++++++++++++------------- MD5 | 15 +++++++++------ NAMESPACE | 4 ++++ NEWS.md | 5 +++++ R/quarto.R |only R/rstudio.R | 42 ++++++++++++++++++++++++++++++++++++++---- man/quarto.Rd |only man/rstudio.Rd | 21 ++++++++++++++++++--- tests/testthat/test-quarto.R |only tests/testthat/test-rstudio.R | 20 +++++++++++++++++++- 10 files changed, 107 insertions(+), 27 deletions(-)
Title: Retrieve Data from the National Transit Database
Description: Downloads the latest 'National Transit Database' data,
processes it, and returns in a tidy data format.
Author: Harald Kliems [cre, aut, cph] ,
Eli Pousson [ctb]
Maintainer: Harald Kliems <kliems@gmail.com>
Diff between ntdr versions 0.3.4 dated 2024-04-04 and 0.4.0 dated 2024-10-25
DESCRIPTION | 40 - MD5 | 28 - NAMESPACE | 31 + NEWS.md | 56 +- R/get_ntd.R | 411 ++++++++++------ R/ntdr-package.R |only R/utils.R | 46 - README.md | 123 ++--- build/vignette.rds |binary inst/doc/ntdr.R | 69 +- inst/doc/ntdr.Rmd | 171 +++--- inst/doc/ntdr.html | 1032 +++++++++++++++++++++--------------------- man/get_ntd.Rd | 82 +-- man/ntdr-package.Rd |only tests/testthat/test-get_ntd.R | 129 ++--- vignettes/ntdr.Rmd | 171 +++--- 16 files changed, 1258 insertions(+), 1131 deletions(-)
Title: Arrange 'Grobs' in Tables
Description: Tools to make it easier to work with "tables" of 'grobs'. The
'gtable' package defines a 'gtable' grob class that specifies a grid
along with a list of grobs and their placement in the grid. Further
the package makes it easy to manipulate and combine 'gtable' objects
so that complex compositions can be built up sequentially.
Author: Hadley Wickham [aut],
Thomas Lin Pedersen [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@posit.co>
Diff between gtable versions 0.3.5 dated 2024-04-22 and 0.3.6 dated 2024-10-25
DESCRIPTION | 13 ++-- MD5 | 48 +++++++++------- NAMESPACE | 5 + NEWS.md | 14 ++++ R/add-grob.R | 6 +- R/grid.R | 30 +--------- R/gtable-layouts.R | 8 +- R/gtable.R | 93 +++++++++++++++++++++++++------ README.md | 6 +- build/vignette.rds |binary inst/doc/profiling.R | 4 - inst/doc/profiling.Rmd | 8 ++ inst/doc/profiling.html | 8 +- man/as.gtable.Rd |only man/figures/README-unnamed-chunk-3-1.png |binary man/figures/README-unnamed-chunk-4-1.png |only man/figures/logo.png |binary man/gtable.Rd | 3 - man/gtable_col.Rd | 14 ++++ man/gtable_row.Rd | 14 ++++ tests/testthat/Rplots.pdf |binary tests/testthat/_snaps |only tests/testthat/test-gtable.R |only tests/testthat/test-layout.R | 6 +- tests/testthat/test-subsetting.R | 8 +- vignettes/profiling.Rmd | 8 ++ 26 files changed, 193 insertions(+), 103 deletions(-)
Title: Bivariate Angular Mixture Models
Description: Fit (using Bayesian methods) and simulate mixtures of univariate and bivariate angular distributions. Chakraborty and Wong (2021) <doi:10.18637/jss.v099.i11>.
Author: Saptarshi Chakraborty [aut, cre],
Samuel W.K. Wong [aut]
Maintainer: Saptarshi Chakraborty <chakra.saptarshi@gmail.com>
Diff between BAMBI versions 2.3.5 dated 2023-03-08 and 2.3.6 dated 2024-10-25
DESCRIPTION | 21 - MD5 | 46 +- R/RcppExports.R | 718 +++++++++++++++++++------------------- R/all_diagnostics.R | 17 R/all_model_select.R | 149 ++++--- R/all_postprodn_fns.R | 20 - R/all_vmcos_fns.R | 2 R/all_wnorm2_fns.R | 785 ++++++++++++++++++++---------------------- R/circ_cor.R | 2 R/fit_mixmodel.R | 2 build/partial.rdb |binary man/bestmodel.Rd | 8 man/bridge_sampler.angmcmc.Rd | 8 man/circ_varcor_model.Rd | 2 man/contour.angmcmc.Rd | 12 man/densityplot.angmcmc.Rd | 2 man/fit_angmix.Rd | 2 man/fit_incremental_angmix.Rd | 29 - man/fix_label.Rd | 6 man/loo.angmcmc.Rd | 4 man/rvmcos.Rd | 2 man/rwnorm2.Rd | 13 man/rwnorm2mix.Rd | 2 man/waic.angmcmc.Rd | 4 24 files changed, 927 insertions(+), 929 deletions(-)
Title: Regression Models with Break-Points / Change-Points Estimation
(with Possibly Random Effects)
Description: Fitting regression models where, in addition to possible linear terms, one or more covariates have segmented (i.e., broken-line or piece-wise linear) or stepmented (i.e. piece-wise constant) effects. Multiple breakpoints for the same variable are allowed.
The estimation method is discussed in Muggeo (2003, <doi:10.1002/sim.1545>) and
illustrated in Muggeo (2008, <https://www.r-project.org/doc/Rnews/Rnews_2008-1.pdf>). An approach for hypothesis testing is presented
in Muggeo (2016, <doi:10.1080/00949655.2016.1149855>), and interval estimation for the breakpoint is discussed in Muggeo (2017, <doi:10.1111/anzs.12200>).
Segmented mixed models, i.e. random effects in the change point, are discussed in Muggeo (2014, <doi:10.1177/1471082X13504721>).
Estimation of piecewise-constant relationships and changepoints (mean-shift models) is
discussed in Fasola et al. (2018, <doi:10.1007/s00180-017-0740-4>).
Author: Vito M. R. Muggeo [aut, cre]
Maintainer: Vito M. R. Muggeo <vito.muggeo@unipa.it>
Diff between segmented versions 2.1-2 dated 2024-09-05 and 2.1-3 dated 2024-10-25
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS | 7 +++++++ R/seg.lm.fit.r | 8 +------- R/segmented.lme.r | 14 ++++++++------ R/slope.R | 13 ++++++++++--- man/predict.segmented.Rd | 4 ++-- man/predict.stepmented.Rd | 4 ++-- man/segmented-package.Rd | 4 ++-- man/slope.Rd | 8 +++++--- 10 files changed, 50 insertions(+), 38 deletions(-)
Title: Client for 'TGStat API'
Description: Allow function for using 'TGStat Stat API' and
'TGStat Search API', for more details see <https://api.tgstat.ru/docs/ru/start/intro.html>.
'TGStat' provide telegram channel analytics data.
Author: Alexey Seleznev [aut, cre]
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between rtgstat versions 0.3.2 dated 2022-08-12 and 0.3.4 dated 2024-10-25
DESCRIPTION | 6 LICENSE | 4 MD5 | 76 +++++------ NEWS.md | 12 + R/tg_channel_views.R | 88 ++++++------- R/tg_channels_search.R | 100 +++++++-------- R/tg_posts_search.R | 240 ++++++++++++++++++------------------- R/utils.R | 178 +++++++++++++-------------- R/zzz.R | 150 +++++++++++------------ README.md | 2 man/rtgstat-package.Rd | 48 +++---- man/tg_api_usage.Rd | 28 ++-- man/tg_auth.Rd | 40 +++--- man/tg_categories.Rd | 40 +++--- man/tg_channel.Rd | 50 +++---- man/tg_channel_avg_posts_reach.Rd | 96 +++++++------- man/tg_channel_err.Rd | 96 +++++++------- man/tg_channel_forwards.Rd | 74 +++++------ man/tg_channel_mentions.Rd | 82 ++++++------ man/tg_channel_posts.Rd | 88 ++++++------- man/tg_channel_stat.Rd | 50 +++---- man/tg_channel_subscribers.Rd | 108 ++++++++-------- man/tg_channel_views.Rd | 86 ++++++------- man/tg_channels_search.Rd | 94 +++++++------- man/tg_countries.Rd | 40 +++--- man/tg_get_channel_id.Rd | 28 ++-- man/tg_get_token.Rd | 28 ++-- man/tg_languages.Rd | 40 +++--- man/tg_mentions_by_channels.Rd | 190 ++++++++++++++--------------- man/tg_mentions_by_period.Rd | 190 ++++++++++++++--------------- man/tg_options.Rd | 28 ++-- man/tg_post.Rd | 60 ++++----- man/tg_post_stat.Rd | 74 +++++------ man/tg_posts_search.Rd | 194 ++++++++++++++--------------- man/tg_set_api_quote_alert_rate.Rd | 34 ++--- man/tg_set_channel_id.Rd | 46 +++---- man/tg_set_check_api_quote.Rd | 34 ++--- man/tg_set_interval.Rd | 34 ++--- man/tg_set_max_tries.Rd | 34 ++--- 39 files changed, 1451 insertions(+), 1439 deletions(-)
Title: Wearable Accelerometer Data File Readers
Description: Reads data collected from wearable acceleratometers as used in sleep and physical activity research. Currently supports file formats: binary data from 'GENEActiv' <https://activinsights.com/>, .bin-format from GENEA devices (not for sale), and .cwa-format from 'Axivity' <https://axivity.com>. Further, it has functions for reading text files with epoch level aggregates from 'Actical', 'Fitbit', 'Actiwatch', 'ActiGraph', and 'PhilipsHealthBand'. Primarily designed to complement R package GGIR <https://CRAN.R-project.org/package=GGIR>.
Author: Vincent T van Hees [aut, cre],
Patrick Bos [aut] ,
Lena Kushleyeva [ctb],
Jing Hua Zhao [ctb],
Evgeny Mirkes [ctb],
Dan Jackson [ctb],
Jairo H Migueles [ctb],
Medical Research Council UK [cph, fnd],
Accelting [cph, fnd]
Maintainer: Vincent T van Hees <v.vanhees@accelting.com>
Diff between GGIRread versions 1.0.1 dated 2024-06-03 and 1.0.2 dated 2024-10-25
GGIRread-1.0.1/GGIRread/inst/NEWS.Rd |only GGIRread-1.0.2/GGIRread/DESCRIPTION | 13 +- GGIRread-1.0.2/GGIRread/MD5 | 54 ++++++++-- GGIRread-1.0.2/GGIRread/NAMESPACE | 11 +- GGIRread-1.0.2/GGIRread/NEWS.md |only GGIRread-1.0.2/GGIRread/R/checkTimeFormat.R |only GGIRread-1.0.2/GGIRread/R/detectQuote.R |only GGIRread-1.0.2/GGIRread/R/findStartData.R |only GGIRread-1.0.2/GGIRread/R/getExtension.R |only GGIRread-1.0.2/GGIRread/R/mergeFitbitData.R |only GGIRread-1.0.2/GGIRread/R/mergePHBdata.R |only GGIRread-1.0.2/GGIRread/R/readActiGraphCount.R |only GGIRread-1.0.2/GGIRread/R/readActicalCount.R |only GGIRread-1.0.2/GGIRread/R/readActiwatchCount.R |only GGIRread-1.0.2/GGIRread/R/readFitbit.R |only GGIRread-1.0.2/GGIRread/R/readPHBCount.R |only GGIRread-1.0.2/GGIRread/R/zzz.R | 16 ++ GGIRread-1.0.2/GGIRread/README.md | 15 +- GGIRread-1.0.2/GGIRread/inst/testfiles/ActiGraph13.csv |only GGIRread-1.0.2/GGIRread/inst/testfiles/ActiGraph13_timestamps_headers.csv |only GGIRread-1.0.2/GGIRread/inst/testfiles/ActiGraph61.csv |only GGIRread-1.0.2/GGIRread/inst/testfiles/Actical.csv |only GGIRread-1.0.2/GGIRread/inst/testfiles/Actiwatch.AWD |only GGIRread-1.0.2/GGIRread/inst/testfiles/Actiwatch.csv |only GGIRread-1.0.2/GGIRread/inst/testfiles/DataList_AH1234567890_PhilipsHealthBand.xlsx |only GGIRread-1.0.2/GGIRread/inst/testfiles/Sleep_Wake_AH1234567890_PhilipsHealthBand.xlsx |only GGIRread-1.0.2/GGIRread/inst/testfiles/calories-1995-06-23_Fitbit.json |only GGIRread-1.0.2/GGIRread/inst/testfiles/sleep-1995-06-23_Fitbit.json |only GGIRread-1.0.2/GGIRread/inst/testfiles/steps-1995-06-23_Fitbit.json |only GGIRread-1.0.2/GGIRread/man/GGIRread-package.Rd | 4 GGIRread-1.0.2/GGIRread/man/checkTimeFormat.Rd |only GGIRread-1.0.2/GGIRread/man/detectQuote.Rd |only GGIRread-1.0.2/GGIRread/man/findStartData.Rd |only GGIRread-1.0.2/GGIRread/man/getExtension.Rd |only GGIRread-1.0.2/GGIRread/man/mergeFitbitData.Rd |only GGIRread-1.0.2/GGIRread/man/mergePHBdata.Rd |only GGIRread-1.0.2/GGIRread/man/readActiGraphCount.Rd |only GGIRread-1.0.2/GGIRread/man/readActicalCount.Rd |only GGIRread-1.0.2/GGIRread/man/readActiwatchCount.Rd |only GGIRread-1.0.2/GGIRread/man/readFitbit.Rd |only GGIRread-1.0.2/GGIRread/man/readPHBCount.Rd |only GGIRread-1.0.2/GGIRread/man/readWav.Rd | 6 - GGIRread-1.0.2/GGIRread/tests/testthat/test_mergeFitbitData.R |only GGIRread-1.0.2/GGIRread/tests/testthat/test_mergePHBdata.R |only GGIRread-1.0.2/GGIRread/tests/testthat/test_readActiGraphCount.R |only GGIRread-1.0.2/GGIRread/tests/testthat/test_readActicalCount.R |only GGIRread-1.0.2/GGIRread/tests/testthat/test_readActiwatchCount.R |only GGIRread-1.0.2/GGIRread/tests/testthat/test_readFitbit.R |only GGIRread-1.0.2/GGIRread/tests/testthat/test_readPHBCount.R |only 49 files changed, 92 insertions(+), 27 deletions(-)
Title: Simplification of scRNA-Seq Data by Merging Together Similar
Cells
Description: Aggregates large single-cell data into metacell dataset by merging together gene expression of very similar cells. 'SuperCell' uses 'velocyto.R' <doi:10.1038/s41586-018-0414-6> <https://github.com/velocyto-team/velocyto.R> for RNA velocity. We also recommend installing 'scater' Bioconductor package <doi:10.18129/B9.bioc.scater> <https://bioconductor.org/packages/release/bioc/html/scater.html>.
Author: Mariia Bilous [aut],
Leonard Herault [cre]
Maintainer: Leonard Herault <leonard.herault@unil.ch>
Diff between SuperCell versions 1.0 dated 2024-09-05 and 1.0.1 dated 2024-10-25
SuperCell-1.0.1/SuperCell/DESCRIPTION | 6 +++--- SuperCell-1.0.1/SuperCell/MD5 | 5 ++--- SuperCell-1.0.1/SuperCell/inst/doc/a_SuperCell.html | 15 ++------------- SuperCell-1.0/SuperCell/R/zzz.R |only 4 files changed, 7 insertions(+), 19 deletions(-)
Title: Goodness-of-Fit Methods for Complete and Right-Censored Data
Description: Graphical tools and goodness-of-fit tests for complete and right-censored data:
1. Kolmogorov-Smirnov, Cramér-von Mises, and Anderson-Darling tests,
which use the empirical distribution function for complete data
and are extended for right-censored data.
2. Generalized chi-squared-type test, which is based on the squared
differences between observed and expected counts using random
cells with right-censored data.
3. A series of graphical tools such as probability or cumulative hazard
plots to guide the decision about the most suitable parametric model
for the data.
Author: Klaus Langohr [aut, cre],
Mireia Besalu [aut],
Matilde Francisco [aut],
Arnau Garcia [aut],
Guadalupe Gomez [aut]
Maintainer: Klaus Langohr <klaus.langohr@upc.edu>
Diff between GofCens versions 1.1 dated 2024-07-29 and 1.2 dated 2024-10-25
DESCRIPTION | 14 MD5 | 79 ++- NAMESPACE | 6 R/ADcens.default.R | 68 ++- R/CvMcens.default.R | 67 ++- R/KScens.default.R | 1017 +++++++++++++++++++++++++++++++++++++++++-------- R/chisqcens.default.R | 72 ++- R/cumhazPlot.default.R | 81 +++ R/gofcens.default.R | 740 ++++++++++++++++++++++++++++++++++- R/kmPlot.default.R | 81 +++ R/plot.kmPlot.R | 40 + R/print.ADcens.R | 68 ++- R/print.CvMcens.R | 69 ++- R/print.KScens.R | 69 ++- R/print.chisqcens.R | 69 ++- R/print.cumhazPlot.R | 24 - R/print.gofcens.R | 74 ++- R/print.kmPlot.R | 24 - R/print.probPlot.R | 26 - R/probPlot.default.R | 118 ++++- README.md |only build |only inst |only man/ADcens.Rd | 69 +-- man/CvMcens.Rd | 83 ++- man/GofCens-package.Rd | 44 +- man/KScens.Rd | 126 +++--- man/chisqcens.Rd | 73 +-- man/cumhazPlot.Rd | 68 +-- man/figures |only man/gofcens.Rd | 104 ++--- man/kmPlot.Rd | 61 +- man/print.ADcens.Rd | 24 - man/print.CvMcens.Rd | 26 - man/print.KScens.Rd | 33 + man/print.chisqcens.Rd | 28 - man/print.gofcens.Rd | 29 - man/probPlot.Rd | 104 ++--- vignettes |only 39 files changed, 2840 insertions(+), 838 deletions(-)
Title: Bayesian Mode Inference
Description: A two-step Bayesian approach for mode inference following
Cross, Hoogerheide, Labonne and van Dijk (2024) <doi:10.1016/j.econlet.2024.111579>).
First, a mixture distribution is fitted on the data using a sparse finite
mixture (SFM) Markov chain Monte Carlo (MCMC) algorithm. The number of
mixture components does not have to be known; the size of the mixture is
estimated endogenously through the SFM approach. Second, the modes of the
estimated mixture at each MCMC draw are retrieved using algorithms
specifically tailored for mode detection. These estimates are then used to
construct posterior probabilities for the number of modes, their locations
and uncertainties, providing a powerful tool for mode inference.
Author: Nalan Bastuerk [aut],
Jamie Cross [aut],
Peter de Knijff [aut],
Lennart Hoogerheide [aut],
Paul Labonne [aut, cre],
Herman van Dijk [aut]
Maintainer: Paul Labonne <labonnepaul@gmail.com>
Diff between BayesMultiMode versions 0.7.1 dated 2024-03-21 and 0.7.2 dated 2024-10-25
DESCRIPTION | 16 MD5 | 44 - NEWS.md | 8 R/bayes_fit.R | 208 ++++---- R/bayes_mixture.R | 186 ++++--- R/bayes_mode.R | 420 +++++++++-------- R/bayes_trace.R | 49 +- R/data.R | 20 R/gibbs_sfm_algos.R | 876 ++++++++++++++++++------------------ R/mix_mode.R | 479 ++++++++++--------- R/mixture.R | 125 ++--- R/mixture_functions.R | 175 +++---- R/plot_methods.R | 470 ++++++++++--------- R/print_methods.R | 50 -- R/summary_methods.R | 96 ++- build/partial.rdb |binary man/bayes_fit.Rd | 62 +- man/bayes_mixture.Rd | 72 +- man/bayes_mode.Rd | 88 ++- man/bayes_trace.Rd | 16 man/mix_mode.Rd | 78 +-- man/mixture.Rd | 32 - tests/testthat/_snaps/bayes_mode.md | 79 ++- 23 files changed, 1987 insertions(+), 1662 deletions(-)
More information about BayesMultiMode at CRAN
Permanent link
Title: Tools for 2D and 3D Plots of Single and Multi-Objective
Linear/Integer Programming Models
Description: Make 2D and 3D plots of linear programming (LP),
integer linear programming (ILP), or mixed integer linear programming (MILP) models
with up to three objectives. Plots of both the solution and criterion space are possible.
For instance the non-dominated (Pareto) set for bi-objective LP/ILP/MILP programming models
(see vignettes for an overview). The package also contains an function for checking if a point
is inside the convex hull.
Author: Lars Relund Nielsen [aut, cre]
Maintainer: Lars Relund Nielsen <lars@relund.dk>
Diff between gMOIP versions 1.5.3 dated 2024-10-09 and 1.5.4 dated 2024-10-25
DESCRIPTION | 8 +++--- MD5 | 20 ++++++++--------- NEWS.md | 4 +++ R/ndset.R | 2 - build/vignette.rds |binary inst/doc/bi-objective_2x.html | 34 ++++++++++++++--------------- inst/doc/bi-objective_3x_ex1.html | 36 +++++++++++++++---------------- inst/doc/intro.html | 36 +++++++++++++++---------------- inst/doc/polytope_2d.html | 4 +-- inst/doc/polytope_3d_ex1.html | 44 +++++++++++++++++++------------------- inst/doc/tri-objective.html | 24 ++++++++++---------- 11 files changed, 108 insertions(+), 104 deletions(-)
Title: Black-Box Optimization Toolkit
Description: Features highly configurable search spaces via the 'paradox'
package and optimizes every user-defined objective function. The
package includes several optimization algorithms e.g. Random Search,
Iterated Racing, Bayesian Optimization (in 'mlr3mbo') and Hyperband
(in 'mlr3hyperband'). bbotk is the base package of 'mlr3tuning',
'mlr3fselect' and 'miesmuschel'.
Author: Marc Becker [cre, aut] ,
Jakob Richter [aut] ,
Michel Lang [aut] ,
Bernd Bischl [aut] ,
Martin Binder [aut],
Olaf Mersmann [ctb]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between bbotk versions 1.1.1 dated 2024-10-15 and 1.2.0 dated 2024-10-25
DESCRIPTION | 6 +++--- MD5 | 34 +++++++++++++++++----------------- NEWS.md | 7 +++++++ R/ContextAsync.R | 10 ++++++++++ R/ContextBatch.R | 10 ++++++++++ R/OptimInstance.R | 1 + R/OptimInstanceAsyncMultiCrit.R | 5 ++++- R/OptimInstanceAsyncSingleCrit.R | 5 ++++- R/OptimInstanceBatchMultiCrit.R | 6 +++++- R/OptimInstanceBatchSingleCrit.R | 5 ++++- R/Optimizer.R | 21 ++++++++++++++++----- R/OptimizerBatchIrace.R | 15 +++++++++++---- man/ContextAsync.Rd | 3 +++ man/ContextBatch.Rd | 3 +++ man/OptimInstanceAsyncMultiCrit.Rd | 5 ++++- man/OptimInstanceAsyncSingleCrit.Rd | 5 ++++- man/OptimInstanceBatchMultiCrit.Rd | 5 ++++- man/OptimInstanceBatchSingleCrit.Rd | 5 ++++- 18 files changed, 114 insertions(+), 37 deletions(-)
Title: Generalised Joint Regression Modelling
Description: Routines for fitting various joint (and univariate) regression models, with several types of covariate effects, in the presence of equations' errors association, endogeneity, non-random sample selection or partial observability.
Author: Giampiero Marra [aut, cre],
Rosalba Radice [aut]
Maintainer: Giampiero Marra <giampiero.marra@ucl.ac.uk>
Diff between GJRM versions 0.2-6.5 dated 2024-01-25 and 0.2-6.7 dated 2024-10-25
GJRM-0.2-6.5/GJRM/R/AT.r |only GJRM-0.2-6.5/GJRM/R/ass.ms.r |only GJRM-0.2-6.5/GJRM/R/bprobgHsFixTheta.r |only GJRM-0.2-6.5/GJRM/R/distrExIntegrate.R |only GJRM-0.2-6.5/GJRM/R/hazsurv.r |only GJRM-0.2-6.5/GJRM/R/imputeCounter.r |only GJRM-0.2-6.5/GJRM/R/imputeSS.r |only GJRM-0.2-6.5/GJRM/R/int.postcheck.R |only GJRM-0.2-6.5/GJRM/R/mice.impute.copulaSS.R |only GJRM-0.2-6.5/GJRM/R/post.check.R |only GJRM-0.2-6.5/GJRM/R/pred.mvt.r |only GJRM-0.2-6.5/GJRM/R/print.AT.r |only GJRM-0.2-6.5/GJRM/R/vis.gam2.r |only GJRM-0.2-6.5/GJRM/R/vis.gjrm.r |only GJRM-0.2-6.5/GJRM/R/zzz.r |only GJRM-0.2-6.5/GJRM/data |only GJRM-0.2-6.5/GJRM/man/AT.Rd |only GJRM-0.2-6.5/GJRM/man/areds.Rd |only GJRM-0.2-6.5/GJRM/man/hazsurv.Rd |only GJRM-0.2-6.5/GJRM/man/hiv.Rd |only GJRM-0.2-6.5/GJRM/man/imputeCounter.Rd |only GJRM-0.2-6.5/GJRM/man/imputeSS.Rd |only GJRM-0.2-6.5/GJRM/man/meps.Rd |only GJRM-0.2-6.5/GJRM/man/post.check.Rd |only GJRM-0.2-6.5/GJRM/man/pred.mvt.Rd |only GJRM-0.2-6.5/GJRM/man/print.AT.Rd |only GJRM-0.2-6.5/GJRM/man/vis.gjrm.Rd |only GJRM-0.2-6.5/GJRM/man/war.Rd |only GJRM-0.2-6.7/GJRM/ChangeLog | 20 GJRM-0.2-6.7/GJRM/DESCRIPTION | 19 GJRM-0.2-6.7/GJRM/MD5 | 308 +++--- GJRM-0.2-6.7/GJRM/NAMESPACE | 30 GJRM-0.2-6.7/GJRM/R/ATE.r |only GJRM-0.2-6.7/GJRM/R/CopulaCLM.r | 39 GJRM-0.2-6.7/GJRM/R/H.triESS.r |only GJRM-0.2-6.7/GJRM/R/H.triSS.r |only GJRM-0.2-6.7/GJRM/R/OR.r | 138 +- GJRM-0.2-6.7/GJRM/R/PE.r | 6 GJRM-0.2-6.7/GJRM/R/RR.r | 157 +-- GJRM-0.2-6.7/GJRM/R/Reg2Copost.r | 31 GJRM-0.2-6.7/GJRM/R/SATE.r |only GJRM-0.2-6.7/GJRM/R/SemiParBIV.fit.R | 10 GJRM-0.2-6.7/GJRM/R/SemiParBIV.fit.post.r | 54 - GJRM-0.2-6.7/GJRM/R/SemiParBIV.r | 28 GJRM-0.2-6.7/GJRM/R/SemiParROY.fit.post.r | 49 - GJRM-0.2-6.7/GJRM/R/SemiParROY.r | 51 - GJRM-0.2-6.7/GJRM/R/SemiParTRIV.fit.post.r | 30 GJRM-0.2-6.7/GJRM/R/SemiParTRIV.r | 14 GJRM-0.2-6.7/GJRM/R/bCopulaCLMgHsOrd.R | 16 GJRM-0.2-6.7/GJRM/R/bcontSurvGBIN.R |only GJRM-0.2-6.7/GJRM/R/bcontSurvGDep.R |only GJRM-0.2-6.7/GJRM/R/bcontSurvGDepA.R |only GJRM-0.2-6.7/GJRM/R/bcontSurvG_extended.R | 115 +- GJRM-0.2-6.7/GJRM/R/bcontSurvGcont2Surv.R |only GJRM-0.2-6.7/GJRM/R/bcorrec.R | 4 GJRM-0.2-6.7/GJRM/R/bcorrec2.R | 2 GJRM-0.2-6.7/GJRM/R/bcorrecDiscr.R | 28 GJRM-0.2-6.7/GJRM/R/bcorrecFuncs.R | 612 +++++++++++++ GJRM-0.2-6.7/GJRM/R/bdiscrcont.R |only GJRM-0.2-6.7/GJRM/R/bdiscrcont12.R |only GJRM-0.2-6.7/GJRM/R/bdiscrcont13.R |only GJRM-0.2-6.7/GJRM/R/bdiscrcont23.R |only GJRM-0.2-6.7/GJRM/R/bdiscrdiscr.R | 13 GJRM-0.2-6.7/GJRM/R/bdiscrdiscr11.R | 15 GJRM-0.2-6.7/GJRM/R/bdiscrdiscr12.R | 14 GJRM-0.2-6.7/GJRM/R/bprobgHsBinROY.r | 6 GJRM-0.2-6.7/GJRM/R/bprobgHsCont3binTWSS.R |only GJRM-0.2-6.7/GJRM/R/bprobgHsContUniv.r | 9 GJRM-0.2-6.7/GJRM/R/bprobgHsContUniv3.r | 7 GJRM-0.2-6.7/GJRM/R/bprobgHsDiscr1.r | 3 GJRM-0.2-6.7/GJRM/R/bprobgHsDiscr1ROY.r | 6 GJRM-0.2-6.7/GJRM/R/bprobgHsDiscr1SS.r | 3 GJRM-0.2-6.7/GJRM/R/bprobgHsDiscr2.r | 3 GJRM-0.2-6.7/GJRM/R/bprobgHsDiscr2ROY.r | 6 GJRM-0.2-6.7/GJRM/R/bprobgHsDiscr2SS.r | 3 GJRM-0.2-6.7/GJRM/R/chooseFuncOpt1.R |only GJRM-0.2-6.7/GJRM/R/cond.mv.R |only GJRM-0.2-6.7/GJRM/R/conv.check.r | 14 GJRM-0.2-6.7/GJRM/R/copula.prob.r | 254 ++++- GJRM-0.2-6.7/GJRM/R/copulaReg.fit.post.r | 84 + GJRM-0.2-6.7/GJRM/R/copulaSampleSel.fit.post.r | 41 GJRM-0.2-6.7/GJRM/R/copulaSampleSel.r | 29 GJRM-0.2-6.7/GJRM/R/cov.c.r | 2 GJRM-0.2-6.7/GJRM/R/cv.inform.r | 8 GJRM-0.2-6.7/GJRM/R/distrHs.r | 4 GJRM-0.2-6.7/GJRM/R/distrHsAT.r | 2 GJRM-0.2-6.7/GJRM/R/distrHsAT1.r | 2 GJRM-0.2-6.7/GJRM/R/distrHsATDiscr.r | 100 +- GJRM-0.2-6.7/GJRM/R/distrHsATDiscr2.r | 69 - GJRM-0.2-6.7/GJRM/R/distrHsDiscr.r | 315 +++++- GJRM-0.2-6.7/GJRM/R/eta.tr.R | 2 GJRM-0.2-6.7/GJRM/R/form.eq12.r | 61 - GJRM-0.2-6.7/GJRM/R/func.OPT.r | 20 GJRM-0.2-6.7/GJRM/R/gamls.upsv.r | 118 +- GJRM-0.2-6.7/GJRM/R/gamlss.R | 720 +++++---------- GJRM-0.2-6.7/GJRM/R/gamlss.fit.post.r | 26 GJRM-0.2-6.7/GJRM/R/gjrm.r | 299 ++++-- GJRM-0.2-6.7/GJRM/R/haz.surv.r |only GJRM-0.2-6.7/GJRM/R/int.rescheck.R |only GJRM-0.2-6.7/GJRM/R/jc.probs1.r | 284 +++--- GJRM-0.2-6.7/GJRM/R/jc.probs2.r | 143 +-- GJRM-0.2-6.7/GJRM/R/jc.probs3.r | 57 - GJRM-0.2-6.7/GJRM/R/jc.probs4.r | 74 + GJRM-0.2-6.7/GJRM/R/jc.probs5.r | 86 + GJRM-0.2-6.7/GJRM/R/jc.probs6.r | 20 GJRM-0.2-6.7/GJRM/R/jc.probs7.r | 921 ++++---------------- GJRM-0.2-6.7/GJRM/R/jc.probs8.r | 608 ++++--------- GJRM-0.2-6.7/GJRM/R/k.tau.R |only GJRM-0.2-6.7/GJRM/R/marg.mv.r |only GJRM-0.2-6.7/GJRM/R/mb.r | 18 GJRM-0.2-6.7/GJRM/R/polys.map.r | 2 GJRM-0.2-6.7/GJRM/R/pp.r | 8 GJRM-0.2-6.7/GJRM/R/ppROY.r | 10 GJRM-0.2-6.7/GJRM/R/pream.wm.r | 31 GJRM-0.2-6.7/GJRM/R/prev.r | 97 -- GJRM-0.2-6.7/GJRM/R/print.ATE.r |only GJRM-0.2-6.7/GJRM/R/print.SATE.r |only GJRM-0.2-6.7/GJRM/R/print.SemiParBIV.r | 24 GJRM-0.2-6.7/GJRM/R/print.SemiParROY.r | 40 GJRM-0.2-6.7/GJRM/R/print.SemiParTRIV.r | 12 GJRM-0.2-6.7/GJRM/R/print.cond.mv.r |only GJRM-0.2-6.7/GJRM/R/print.copulaSampleSel.r | 20 GJRM-0.2-6.7/GJRM/R/print.gamlss.r | 2 GJRM-0.2-6.7/GJRM/R/print.gjrm.r | 76 - GJRM-0.2-6.7/GJRM/R/print.marg.mv.r |only GJRM-0.2-6.7/GJRM/R/print.mb.r | 6 GJRM-0.2-6.7/GJRM/R/print.prev.r | 4 GJRM-0.2-6.7/GJRM/R/print.summary.SemiParBIV.r | 41 GJRM-0.2-6.7/GJRM/R/print.summary.SemiParROY.r | 46 GJRM-0.2-6.7/GJRM/R/print.summary.SemiParTRIV.r | 31 GJRM-0.2-6.7/GJRM/R/print.summary.copulaSampleSel.r | 16 GJRM-0.2-6.7/GJRM/R/print.summary.gamlss.r | 4 GJRM-0.2-6.7/GJRM/R/print.summary.gjrm.r | 42 GJRM-0.2-6.7/GJRM/R/pscr.r | 316 +++--- GJRM-0.2-6.7/GJRM/R/pscr0.r | 269 +++-- GJRM-0.2-6.7/GJRM/R/r.resp.R | 18 GJRM-0.2-6.7/GJRM/R/rIC.R | 22 GJRM-0.2-6.7/GJRM/R/res.check.R |only GJRM-0.2-6.7/GJRM/R/resp.check.R | 91 + GJRM-0.2-6.7/GJRM/R/rob.const.R | 8 GJRM-0.2-6.7/GJRM/R/rob.int.R | 4 GJRM-0.2-6.7/GJRM/R/sim.resp.R | 12 GJRM-0.2-6.7/GJRM/R/startsn.r | 10 GJRM-0.2-6.7/GJRM/R/summary.SemiParBIV.r | 22 GJRM-0.2-6.7/GJRM/R/summary.SemiParROY.r | 24 GJRM-0.2-6.7/GJRM/R/summary.SemiParTRIV.r | 8 GJRM-0.2-6.7/GJRM/R/summary.copulaSampleSel.r | 23 GJRM-0.2-6.7/GJRM/R/summary.gamlss.r | 16 GJRM-0.2-6.7/GJRM/R/summary.gjrm.r | 31 GJRM-0.2-6.7/GJRM/R/susu.r | 23 GJRM-0.2-6.7/GJRM/R/susutsn.r | 34 GJRM-0.2-6.7/GJRM/R/teta.tr.R | 2 GJRM-0.2-6.7/GJRM/R/theta2tau.r |only GJRM-0.2-6.7/GJRM/R/triprobgHsESS.R |only GJRM-0.2-6.7/GJRM/R/triprobgHsSS.R |only GJRM-0.2-6.7/GJRM/inst/CITATION | 6 GJRM-0.2-6.7/GJRM/man/ATE.Rd |only GJRM-0.2-6.7/GJRM/man/GJRM-package.Rd | 15 GJRM-0.2-6.7/GJRM/man/LM.bpm.Rd | 3 GJRM-0.2-6.7/GJRM/man/OR.Rd | 48 - GJRM-0.2-6.7/GJRM/man/PE.Rd | 6 GJRM-0.2-6.7/GJRM/man/RR.Rd | 47 - GJRM-0.2-6.7/GJRM/man/SATE.Rd |only GJRM-0.2-6.7/GJRM/man/SemiParBIV.fit.post.Rd | 2 GJRM-0.2-6.7/GJRM/man/cond.mv.Rd |only GJRM-0.2-6.7/GJRM/man/conv.check.Rd | 5 GJRM-0.2-6.7/GJRM/man/copula.prob.Rd | 21 GJRM-0.2-6.7/GJRM/man/gamlss.Rd | 130 +- GJRM-0.2-6.7/GJRM/man/gjrm.Rd | 503 +++------- GJRM-0.2-6.7/GJRM/man/gt.bpm.Rd | 2 GJRM-0.2-6.7/GJRM/man/haz.surv.Rd |only GJRM-0.2-6.7/GJRM/man/k.tau.Rd |only GJRM-0.2-6.7/GJRM/man/marg.mv.Rd |only GJRM-0.2-6.7/GJRM/man/mb.Rd | 4 GJRM-0.2-6.7/GJRM/man/polys.map.Rd | 4 GJRM-0.2-6.7/GJRM/man/prev.Rd | 41 GJRM-0.2-6.7/GJRM/man/print.ATE.Rd |only GJRM-0.2-6.7/GJRM/man/print.SATE.Rd |only GJRM-0.2-6.7/GJRM/man/print.cond.mv.Rd |only GJRM-0.2-6.7/GJRM/man/print.marg.mv.Rd |only GJRM-0.2-6.7/GJRM/man/res.check.Rd |only GJRM-0.2-6.7/GJRM/man/resp.check.Rd | 44 GJRM-0.2-6.7/GJRM/man/rob.const.Rd | 5 GJRM-0.2-6.7/GJRM/man/rob.int.Rd | 2 GJRM-0.2-6.7/GJRM/man/summary.SemiParBIV.Rd | 9 GJRM-0.2-6.7/GJRM/man/summary.gjrm.Rd | 8 186 files changed, 4447 insertions(+), 4133 deletions(-)
Title: ADaM Test Data for the 'Pharmaverse' Family of Packages
Description: A set of Analysis Data Model (ADaM) datasets constructed using the
Study Data Tabulation Model (SDTM) datasets contained in the 'pharmaversesdtm' package and
the template scripts from the 'admiral' family of packages. ADaM dataset specifications
are described in the CDISC ADaM implementation guide, accessible by creating a free account on <https://www.cdisc.org/>.
Author: Edoardo Mancini [aut, cre] ,
Kangjie Zhang [aut],
Stefan Bundfuss [aut] ,
Gayatri G [aut],
Daphne Grassely [aut],
Zelos Zhu [aut],
Sadchla Mascary [aut]
Maintainer: Edoardo Mancini <edoardo.mancini@roche.com>
Diff between pharmaverseadam versions 1.0.0 dated 2024-07-01 and 1.1.0 dated 2024-10-25
DESCRIPTION | 21 ++--- MD5 | 147 ++++++++++++++++++++--------------------- NEWS.md | 39 +++++++++- R/adae.R | 13 ++- R/adbcva_ophtha.R | 12 ++- R/adce_vaccine.R | 4 - R/adcm.R | 13 ++- R/adeg.R | 17 ++-- R/adex.R | 12 ++- R/adface_vaccine.R | 7 + R/adis_vaccine.R | 4 - R/adlb.R | 12 ++- R/adlbhy.R | 4 - R/admh.R | 12 ++- R/adoe_ophtha.R | 12 ++- R/adpc.R | 12 ++- R/adpp.R | 14 ++- R/adppk.R | 4 - R/adrs_onco.R | 4 - R/adsl.R | 4 - R/adsl_vaccine.R | 4 - R/adtr_onco.R | 4 - R/adtte_onco.R | 4 - R/advfq_ophtha.R | 12 ++- R/advs.R | 14 ++- R/advs_peds.R |only README.md | 4 - data/adae.rda |binary data/adbcva_ophtha.rda |binary data/adce_vaccine.rda |binary data/adcm.rda |binary data/adeg.rda |binary data/adex.rda |binary data/adface_vaccine.rda |binary data/adis_vaccine.rda |binary data/adlb.rda |binary data/adlbhy.rda |binary data/admh.rda |binary data/adoe_ophtha.rda |binary data/adpc.rda |binary data/adpp.rda |binary data/adppk.rda |binary data/adrs_onco.rda |binary data/adsl.rda |binary data/adsl_vaccine.rda |binary data/adtr_onco.rda |binary data/adtte_onco.rda |binary data/advfq_ophtha.rda |binary data/advs.rda |binary data/advs_peds.rda |only inst/WORDLIST | 3 inst/extdata/adams-specs.xlsx |binary man/adae.Rd | 12 ++- man/adbcva_ophtha.Rd | 12 ++- man/adce_vaccine.Rd | 4 - man/adcm.Rd | 13 ++- man/adeg.Rd | 17 ++-- man/adex.Rd | 12 ++- man/adface_vaccine.Rd | 7 + man/adis_vaccine.Rd | 4 - man/adlb.Rd | 12 ++- man/adlbhy.Rd | 4 - man/admh.Rd | 12 ++- man/adoe_ophtha.Rd | 12 ++- man/adpc.Rd | 12 ++- man/adpp.Rd | 14 ++- man/adppk.Rd | 4 - man/adrs_onco.Rd | 4 - man/adsl.Rd | 4 - man/adsl_vaccine.Rd | 4 - man/adtr_onco.Rd | 4 - man/adtte_onco.Rd | 4 - man/advfq_ophtha.Rd | 12 ++- man/advs.Rd | 14 ++- man/advs_peds.Rd |only man/pharmaverseadam-package.Rd | 6 - 76 files changed, 372 insertions(+), 243 deletions(-)
More information about pharmaverseadam at CRAN
Permanent link
Title: Kernel Functions and Tools for Machine Learning Applications
Description: Kernel functions for diverse types of data (including, but not
restricted to: nonnegative and real vectors, real matrices, categorical
and ordinal variables, sets, strings), plus other utilities like kernel
similarity, kernel Principal Components Analysis (PCA) and features'
importance for Support Vector Machines (SVMs), which expand other 'R'
packages like 'kernlab'.
Author: Elies Ramon [aut, cre, cph]
Maintainer: Elies Ramon <eramon@everlyrusher.com>
Diff between kerntools versions 1.0.2 dated 2024-09-04 and 1.1.0 dated 2024-10-25
DESCRIPTION | 9 +++-- MD5 | 38 +++++++++++++-------- NEWS.md | 6 +++ R/kernel_functions.R | 6 +-- R/soil.R |only README.md | 13 +++++-- build/vignette.rds |binary data/soil.rda |only inst/WORDLIST | 59 +++++++++++++++++++++++++++++++++ inst/doc/Kernel-PCA-and-CIA.R |only inst/doc/Kernel-PCA-and-CIA.Rmd |only inst/doc/Kernel-PCA-and-CIA.html |only inst/doc/Kernel-functions.R |only inst/doc/Kernel-functions.Rmd |only inst/doc/Kernel-functions.html |only inst/doc/kerntools.Rmd | 2 - inst/doc/kerntools.html | 14 +++---- man/BrayCurtis.Rd | 2 - man/Jaccard.Rd | 4 +- man/figures/logo.png |only man/kerntools-package.Rd | 11 ++++++ man/soil.Rd |only tests/testthat/test-kernel_functions.R | 4 +- vignettes/Kernel-PCA-and-CIA.Rmd |only vignettes/Kernel-functions.Rmd |only vignettes/kerntools.Rmd | 2 - 26 files changed, 134 insertions(+), 36 deletions(-)
More information about dexisensitivity at CRAN
Permanent link
Title: SDTM Test Data for the 'Pharmaverse' Family of Packages
Description: A set of Study Data Tabulation Model (SDTM) datasets from the Clinical
Data Interchange Standards Consortium (CDISC) pilot project used for testing
and developing Analysis Data Model (ADaM) datasets inside the pharmaverse
family of packages. SDTM dataset specifications are described in the CDISC SDTM implementation guide,
accessible by creating a free account on <https://www.cdisc.org/>.
Author: Edoardo Mancini [aut, cre] ,
Gayatri G [aut],
Kangjie Zhang [aut],
Pooja Kumari [aut],
Stefan Bundfuss [aut] ,
Zelos Zhu [aut],
Sadchla Mascary [aut],
Vladyslav Shuliar [aut]
Maintainer: Edoardo Mancini <edoardo.mancini@roche.com>
Diff between pharmaversesdtm versions 1.0.0 dated 2024-06-06 and 1.1.0 dated 2024-10-25
DESCRIPTION | 26 ++++++++++++++------------ MD5 | 26 +++++++++++++++----------- NEWS.md | 17 +++++++++++++++++ R/data.R | 14 ++++++++++++++ data/ae_ophtha.rda |binary data/cm.rda |binary data/dm_peds.rda |only data/eg.rda |binary data/vs_peds.rda |only inst/WORDLIST | 7 ++++--- man/ae_ophtha.Rd | 2 +- man/cm.Rd | 2 +- man/dm_peds.Rd |only man/eg.Rd | 2 +- man/pharmaversesdtm-package.Rd | 7 ++++--- man/vs_peds.Rd |only 16 files changed, 71 insertions(+), 32 deletions(-)
More information about pharmaversesdtm at CRAN
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More information about graphicalEvidence at CRAN
Permanent link
More information about DiscreteGapStatistic at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-09-19 0.3-3
2014-12-03 0.3-2
2014-12-01 0.3-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-01-04 0.1.1
2021-12-10 0.1.0
Title: Clinical Stroke Research
Description: A collection of tools for clinical trial data management and
analysis in research and teaching.
The package is mainly collected for personal use, but any use beyond that is encouraged.
This package has migrated functions from 'agdamsbo/daDoctoR', and new functions has been added.
Version follows months and year. See NEWS/Changelog for release notes.
This package includes sampled data from the TALOS trial (Kraglund et al (2018) <doi:10.1161/STROKEAHA.117.020067>).
The win_prob() function is based on work by Zou et al (2022) <doi:10.1161/STROKEAHA.121.037744>.
The age_calc() function is based on work by Becker (2020) <doi:10.18637/jss.v093.i02>.
Author: Andreas Gammelgaard Damsbo [aut, cre]
Maintainer: Andreas Gammelgaard Damsbo <agdamsbo@clin.au.dk>
Diff between stRoke versions 23.9.1 dated 2023-09-07 and 24.10.1 dated 2024-10-25
stRoke-23.9.1/stRoke/inst/doc/ds2dd.R |only stRoke-23.9.1/stRoke/inst/doc/ds2dd.Rmd |only stRoke-23.9.1/stRoke/inst/doc/ds2dd.html |only stRoke-23.9.1/stRoke/tests/spelling.R |only stRoke-23.9.1/stRoke/tests/testthat/Rplots.pdf |only stRoke-23.9.1/stRoke/tests/testthat/data |only stRoke-23.9.1/stRoke/tests/testthat/test-add_padding.R |only stRoke-23.9.1/stRoke/tests/testthat/test-age_calc.R |only stRoke-23.9.1/stRoke/tests/testthat/test-chunks.R |only stRoke-23.9.1/stRoke/tests/testthat/test-contrast_text.R |only stRoke-23.9.1/stRoke/tests/testthat/test-ds2dd.R |only stRoke-23.9.1/stRoke/tests/testthat/test-files_filter.R |only stRoke-23.9.1/stRoke/tests/testthat/test-quantile_cut.R |only stRoke-23.9.1/stRoke/tests/testthat/test-str_extract.R |only stRoke-23.9.1/stRoke/tests/testthat/test-write_ical.R |only stRoke-23.9.1/stRoke/vignettes/ds2dd.Rmd |only stRoke-24.10.1/stRoke/DESCRIPTION | 20 - stRoke-24.10.1/stRoke/MD5 | 88 ++-- stRoke-24.10.1/stRoke/NAMESPACE | 1 stRoke-24.10.1/stRoke/NEWS.md | 15 stRoke-24.10.1/stRoke/R/add_padding.R | 15 stRoke-24.10.1/stRoke/R/chunks_of_n.R | 2 stRoke-24.10.1/stRoke/R/ci_plot.R | 4 stRoke-24.10.1/stRoke/R/contrast_text.R | 4 stRoke-24.10.1/stRoke/R/files_filter.R | 2 stRoke-24.10.1/stRoke/R/generic_stroke.R | 4 stRoke-24.10.1/stRoke/R/metadata.R | 2 stRoke-24.10.1/stRoke/R/mfi_calc.R |only stRoke-24.10.1/stRoke/R/pase_calc.R | 83 +++- stRoke-24.10.1/stRoke/R/quantile_cut.R | 2 stRoke-24.10.1/stRoke/R/str_extract.R | 4 stRoke-24.10.1/stRoke/R/write_ical.R | 2 stRoke-24.10.1/stRoke/build/partial.rdb |binary stRoke-24.10.1/stRoke/build/vignette.rds |binary stRoke-24.10.1/stRoke/data/cprs.rda |binary stRoke-24.10.1/stRoke/inst/WORDLIST | 11 stRoke-24.10.1/stRoke/inst/doc/toolbox.R | 2 stRoke-24.10.1/stRoke/inst/doc/toolbox.Rmd | 8 stRoke-24.10.1/stRoke/inst/doc/toolbox.html | 233 ++++++------- stRoke-24.10.1/stRoke/man/add_padding.Rd | 19 - stRoke-24.10.1/stRoke/man/chunks_of_n.Rd | 4 stRoke-24.10.1/stRoke/man/contrast_text.Rd | 2 stRoke-24.10.1/stRoke/man/files_filter.Rd | 2 stRoke-24.10.1/stRoke/man/metadata_names.Rd | 2 stRoke-24.10.1/stRoke/man/mfi_domains.Rd |only stRoke-24.10.1/stRoke/man/multi_rev.Rd |only stRoke-24.10.1/stRoke/man/pase_calc.Rd | 7 stRoke-24.10.1/stRoke/man/quantile_cut.Rd | 2 stRoke-24.10.1/stRoke/man/stRoke-package.Rd | 2 stRoke-24.10.1/stRoke/man/str_extract.Rd | 3 stRoke-24.10.1/stRoke/man/write_ical.Rd | 2 stRoke-24.10.1/stRoke/tests/testthat/test-generic_stroke.R | 4 stRoke-24.10.1/stRoke/tests/testthat/testthat-problems.rds |only stRoke-24.10.1/stRoke/vignettes/toolbox.Rmd | 8 54 files changed, 305 insertions(+), 254 deletions(-)
Title: Modeling of Ordinal Random Variables via Softmax Regression
Description: Supports the modeling of ordinal random variables,
like the outcomes of races, via Softmax regression,
under the Harville <doi:10.1080/01621459.1973.10482425> and
Henery <doi:10.1111/j.2517-6161.1981.tb01153.x> models.
Author: Steven E. Pav [aut, cre]
Maintainer: Steven E. Pav <shabbychef@gmail.com>
Diff between ohenery versions 0.1.1 dated 2019-10-15 and 0.1.2 dated 2024-10-25
ChangeLog | 4 + DESCRIPTION | 10 ++-- MD5 | 53 ++++++++++++------------- R/data.r | 2 R/harsm.r | 72 +++++++++++++++++++++++----------- R/hensm.r | 93 ++++++++++++++++++++++++++++++++++---------- R/linodds.r | 4 - R/ohenery.r | 13 ++++-- R/rsm.r | 82 +++++++++++++++++++------------------- R/utils.r | 4 - README.md | 10 ++-- build |only inst/CITATION | 24 +++++------ man/NEWS.Rd | 9 +++- man/best_picture.Rd | 6 +- man/diving.Rd | 6 +- man/harsm.Rd | 32 ++++++++++----- man/harsmfit.Rd | 29 +++++++++++-- man/hensm.Rd | 45 ++++++++++++++++----- man/linodds.Rd | 12 ++++- man/ohenery.Rd | 17 ++++++-- man/race_data.Rd | 6 +- man/smlik.Rd | 4 - src/RcppExports.cpp | 5 ++ src/erank.cpp | 2 src/rhenery.cpp | 2 src/smlik.cpp | 2 tests/testthat/test-basic.r | 83 ++++++++++++++++++++++++++++++++++++++- 28 files changed, 448 insertions(+), 183 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-10-10 1.0.12
Title: Random Generation of Survival Data
Description: Random generation of survival data from a wide range of regression models, including accelerated failure time (AFT), proportional hazards (PH), proportional odds (PO), accelerated hazard (AH), Yang and Prentice (YP), and extended hazard (EH) models. The package 'rsurv' also stands out by its ability to generate survival data from an unlimited number of baseline distributions provided that an implementation of the quantile function of the chosen baseline distribution is available in R. Another nice feature of the package 'rsurv' lies in the fact that linear predictors are specified via a formula-based approach, facilitating the inclusion of categorical variables and interaction terms. The functions implemented in the package 'rsurv' can also be employed to simulate survival data with more complex structures, such as survival data with different types of censoring mechanisms, survival data with cure fraction, survival data with random effects (frailties), multivariate survival data, and [...truncated...]
Author: Fabio Demarqui [aut, cre, cph]
Maintainer: Fabio Demarqui <fndemarqui@est.ufmg.br>
Diff between rsurv versions 0.0.1 dated 2024-06-06 and 0.0.2 dated 2024-10-25
rsurv-0.0.1/rsurv/man/bell.Rd |only rsurv-0.0.1/rsurv/man/poisson.Rd |only rsurv-0.0.2/rsurv/DESCRIPTION | 14 +-- rsurv-0.0.2/rsurv/MD5 | 70 ++++++++-------- rsurv-0.0.2/rsurv/NAMESPACE | 5 - rsurv-0.0.2/rsurv/NEWS.md | 9 ++ rsurv-0.0.2/rsurv/R/lp.R | 7 - rsurv-0.0.2/rsurv/R/raftreg.R | 24 ++++- rsurv-0.0.2/rsurv/R/rahreg.R | 24 ++++- rsurv-0.0.2/rsurv/R/rehreg.R | 25 ++++- rsurv-0.0.2/rsurv/R/rfrailty.R | 2 rsurv-0.0.2/rsurv/R/rphreg.R | 23 ++++- rsurv-0.0.2/rsurv/R/rporeg.R | 23 ++++- rsurv-0.0.2/rsurv/R/rsurv-package.R | 4 rsurv-0.0.2/rsurv/R/rsurv.R | 35 +++++++- rsurv-0.0.2/rsurv/R/rsurvcure.R | 130 ++++++------------------------- rsurv-0.0.2/rsurv/R/rypreg.R | 25 ++++- rsurv-0.0.2/rsurv/README.md | 6 + rsurv-0.0.2/rsurv/build/partial.rdb |binary rsurv-0.0.2/rsurv/build/vignette.rds |binary rsurv-0.0.2/rsurv/inst/doc/rsurv.R | 1 rsurv-0.0.2/rsurv/inst/doc/rsurv.Rmd | 1 rsurv-0.0.2/rsurv/inst/doc/rsurv.html | 79 +++++++++--------- rsurv-0.0.2/rsurv/man/bernoulli.Rd | 2 rsurv-0.0.2/rsurv/man/inv_pgf.Rd | 11 -- rsurv-0.0.2/rsurv/man/lp.Rd | 5 - rsurv-0.0.2/rsurv/man/negbin.Rd | 6 - rsurv-0.0.2/rsurv/man/qsurv.Rd |only rsurv-0.0.2/rsurv/man/raftreg.Rd | 9 +- rsurv-0.0.2/rsurv/man/rahreg.Rd | 9 +- rsurv-0.0.2/rsurv/man/rehreg.Rd | 7 - rsurv-0.0.2/rsurv/man/rfrailty.Rd | 2 rsurv-0.0.2/rsurv/man/rphreg.Rd | 9 +- rsurv-0.0.2/rsurv/man/rporeg.Rd | 9 +- rsurv-0.0.2/rsurv/man/rsurv-package.Rd | 2 rsurv-0.0.2/rsurv/man/rypreg.Rd | 7 - rsurv-0.0.2/rsurv/tests/testthat/test5.R |only rsurv-0.0.2/rsurv/vignettes/rsurv.Rmd | 1 38 files changed, 311 insertions(+), 275 deletions(-)
Title: Identify Characteristics of Patients in the OMOP Common Data
Model
Description: Identify the characteristics of patients in data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model.
Author: Marti Catala [aut, cre] ,
Yuchen Guo [aut] ,
Mike Du [aut] ,
Kim Lopez-Guell [aut] ,
Edward Burn [aut] ,
Nuria Mercade-Besora [aut] ,
Xintong Li [ctb] ,
Xihang Chen [ctb]
Maintainer: Marti Catala <marti.catalasabate@ndorms.ox.ac.uk>
Diff between PatientProfiles versions 1.2.0 dated 2024-09-11 and 1.2.1 dated 2024-10-25
DESCRIPTION | 6 MD5 | 60 +++--- R/addConceptIntersect.R | 23 ++ R/addDeath.R | 14 - R/addDemographics.R | 13 + R/addDemographicsQuery.R | 12 - R/addIntersect.R | 61 +++--- R/addObservationPeriodId.R | 2 R/checks.R | 147 --------------- R/formats.R | 5 R/mockPatientProfiles.R | 9 R/summariseResult.R | 5 inst/doc/cohort-intersect.html | 126 ++++++------- inst/doc/concept-intersect.html | 94 +++++----- inst/doc/demographics.html | 250 +++++++++++++-------------- inst/doc/summarise.html | 210 +++++++++++----------- inst/doc/table-intersect.html | 86 ++++----- man/addConceptIntersectCount.Rd | 4 man/addConceptIntersectDate.Rd | 4 man/addConceptIntersectDays.Rd | 4 man/addConceptIntersectFlag.Rd | 4 tests/testthat/test-addCategories.R | 13 + tests/testthat/test-addCohortIntersect.R | 2 tests/testthat/test-addConceptIntersect.R | 138 ++++++++++++++ tests/testthat/test-addDeath.R | 4 tests/testthat/test-addDemographics.R | 49 ++++- tests/testthat/test-addInObservation.R | 10 - tests/testthat/test-addIntersect.R | 16 - tests/testthat/test-addObservationPeriodId.R | 23 ++ tests/testthat/test-checks.R | 31 --- tests/testthat/test-summariseResult.R | 3 31 files changed, 766 insertions(+), 662 deletions(-)
More information about PatientProfiles at CRAN
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