Title: Utilities from 'Seminar fuer Statistik' ETH Zurich
Description: Useful utilities ['goodies'] from Seminar fuer Statistik ETH Zurich,
some of which were ported from S-plus in the 1990s.
For graphics, have pretty (Log-scale) axes eaxis(), an enhanced Tukey-Anscombe
plot, combining histogram and boxplot, 2d-residual plots, a 'tachoPlot()',
pretty arrows, etc.
For robustness, have a robust F test and robust range().
For system support, notably on Linux, provides 'Sys.*()' functions with
more access to system and CPU information.
Finally, miscellaneous utilities such as simple efficient prime numbers,
integer codes, Duplicated(), toLatex.numeric() and is.whole().
Author: Martin Maechler [aut, cre] ,
Werner Stahel [ctb] , f.robftest, last,
p.scales, p.dnorm),
Andreas Ruckstuhl [ctb] , p.profileTraces,
p.res.2x),
Christian Keller [ctb] , p.tachoPlot),
Kjetil Halvorsen [ctb] , ecdf.ksCI),
Alain Hauser [ctb] , is.whole,
[...truncated...]
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between sfsmisc versions 1.1-19 dated 2024-08-19 and 1.1-20 dated 2024-11-05
DESCRIPTION | 11 ++++++----- MD5 | 10 +++++----- R/sessionInfo-ext.R | 3 +++ build/partial.rdb |binary inst/NEWS.Rd | 9 +++++++++ man/sessionInfoX.Rd | 1 + 6 files changed, 24 insertions(+), 10 deletions(-)
Title: Make, Update, and Query Binary Causal Models
Description: Users can declare causal models over binary nodes, update beliefs about causal types given data, and calculate arbitrary queries. Updating is implemented in 'stan'. See Humphreys and Jacobs, 2023, Integrated Inferences (<DOI: 10.1017/9781316718636>) and Pearl, 2009 Causality (<DOI:10.1017/CBO9780511803161>).
Author: Clara Bicalho [ctb],
Jasper Cooper [ctb],
Macartan Humphreys [aut] ,
Till Tietz [aut, cre] ,
Alan Jacobs [aut],
Merlin Heidemanns [ctb],
Lily Medina [aut] ,
Julio Solis [ctb],
Georgiy Syunyaev [aut]
Maintainer: Till Tietz <ttietz2014@gmail.com>
Diff between CausalQueries versions 1.1.1 dated 2024-04-26 and 1.2.1 dated 2024-11-05
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Title: Generalized Latent Markov Models
Description: Latent Markov models for longitudinal continuous and categorical data. See Bartolucci, Pandolfi, Pennoni (2017)<doi:10.18637/jss.v081.i04>.
Author: Francesco Bartolucci [aut, cre],
Silvia Pandolfi [aut],
Fulvia Pennoni [aut],
Alessio Farcomeni [ctb],
Alessio Serafini [ctb]
Maintainer: Francesco Bartolucci <francesco.bartolucci@unipg.it>
Diff between LMest versions 3.2.2 dated 2024-09-15 and 3.2.3 dated 2024-11-05
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- R/lmbasic.R | 2 +- R/lmbasic.cont.R | 1 + R/lmcovlatent.R | 2 +- R/lmcovlatent.cont.R | 2 +- R/lmcovmanifest.R | 2 +- R/lmcovmanifest.cont.R | 2 +- R/mccov.R | 3 ++- inst/doc/vignetteLMest.html | 8 ++++---- 10 files changed, 25 insertions(+), 23 deletions(-)
Title: Methods for Detecting Safety Signals in Clinical Trials Using
Body-Systems (System Organ Classes)
Description: Provides a self-contained set of methods to aid clinical trial
safety investigators, statisticians and researchers, in the early
detection of adverse events using groupings by body-system or system
organ class. This work was supported by the Engineering and Physical
Sciences Research Council (UK) (EPSRC) [award reference 1521741] and
Frontier Science (Scotland) Ltd. The package title c212 is in reference
to the original Engineering and Physical Sciences Research Council (UK)
funded project which was named CASE 2/12.
Author: Raymond Carragher [aut, cre]
Maintainer: Raymond Carragher <rcarragh@gmail.com>
Diff between c212 versions 0.98 dated 2020-09-08 and 1.0.1 dated 2024-11-05
DESCRIPTION | 33 ++++++++++++-------- MD5 | 47 ++++++++++++++--------------- R/c212.interim.BB.hier3.lev0.convergence.R | 4 +- R/c212.interim.BB.hier3.lev1.convergence.R | 8 ++-- R/c212.interim.BB.hier3.lev2.convergence.R | 8 ++-- R/global.R | 2 - data/c212.FDR.data.txt.gz |binary data/c212.trial.data.txt.gz |binary data/c212.trial.interval.data1.txt.gz |binary data/c212.trial.interval.data2.txt.gz |binary src/c2121a.cpp | 32 ++++++++++--------- src/c2121a_poisson_mc_hier2_lev0.cpp | 30 +++++++++--------- src/c2121a_poisson_mc_hier2_lev1.cpp | 10 +++--- src/c2121a_poisson_mc_hier3_lev0.cpp | 14 ++++---- src/c2121a_poisson_mc_hier3_lev1.cpp | 10 +++--- src/c2121a_poisson_mc_hier3_lev2.cpp | 10 +++--- src/c212BB.cpp | 22 +++++++------ src/c212BB_poisson_mc_hier2_lev0.cpp | 20 ++++++------ src/c212BB_poisson_mc_hier2_lev1.cpp | 10 +++--- src/c212BB_poisson_mc_hier3_lev0.cpp | 26 ++++++++-------- src/c212BB_poisson_mc_hier3_lev1.cpp | 10 +++--- src/c212BB_poisson_mc_hier3_lev2.cpp | 16 +++++---- src/c212_Rdefines.h |only src/c212_exec.cpp | 4 +- src/register.cpp | 5 ++- 25 files changed, 180 insertions(+), 141 deletions(-)
Title: Many Ways to Make, Modify, Map, Mark, and Measure Myriad
Networks
Description: Many tools for making, modifying, mapping, marking, measuring,
and motifs and memberships of many different types of networks.
All functions operate with matrices, edge lists, and 'igraph', 'network', and 'tidygraph' objects,
and on one-mode, two-mode (bipartite), and sometimes three-mode networks.
The package includes functions for importing and exporting, creating and generating networks,
modifying networks and node and tie attributes,
and describing and visualizing networks with sensible defaults.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb] ,
Christian Steglich [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between manynet versions 1.3.1 dated 2024-10-29 and 1.3.2 dated 2024-11-05
DESCRIPTION | 8 ++++---- MD5 | 30 +++++++++++++++--------------- NAMESPACE | 1 + NEWS.md | 7 +++++++ R/class_measures.R | 13 +++++++++---- R/measure_centrality.R | 8 ++++---- R/measure_closure.R | 10 +++++----- R/measure_cohesion.R | 16 +++++++++------- R/measure_diffusion.R | 24 ++++++++++++++++-------- R/measure_features.R | 36 ++++++++++++++++++++++++++++-------- R/measure_heterogeneity.R | 11 ++++++----- R/measure_hierarchy.R | 9 ++++++--- R/measure_properties.R | 8 +++++--- R/zzz.R | 3 ++- build/partial.rdb |binary man/measure_periods.Rd | 4 ++++ 16 files changed, 121 insertions(+), 67 deletions(-)
Title: Vintage Sparse PCA for Semi-Parametric Factor Analysis
Description: Provides fast spectral estimation of latent factors in random
dot product graphs using the vsp estimator. Under mild assumptions,
the vsp estimator is consistent for (degree-corrected) stochastic
blockmodels, (degree-corrected) mixed-membership stochastic
blockmodels, and degree-corrected overlapping stochastic blockmodels.
Author: Karl Rohe [aut],
Muzhe Zeng [aut],
Alex Hayes [aut, cre, cph] ,
Fan Chen [aut]
Maintainer: Alex Hayes <alexpghayes@gmail.com>
Diff between vsp versions 0.1.1 dated 2022-12-05 and 0.1.2 dated 2024-11-05
vsp-0.1.1/vsp/man/make_skew_positive.Rd |only vsp-0.1.2/vsp/DESCRIPTION | 14 +- vsp-0.1.2/vsp/MD5 | 59 ++++------ vsp-0.1.2/vsp/NAMESPACE | 1 vsp-0.1.2/vsp/NEWS.md | 10 + vsp-0.1.2/vsp/R/accessors.R | 23 +++ vsp-0.1.2/vsp/R/object.R | 2 vsp-0.1.2/vsp/R/plots.R | 22 +++ vsp-0.1.2/vsp/R/utils.R | 49 -------- vsp-0.1.2/vsp/R/vsp.R | 99 ++++++++++++++++- vsp-0.1.2/vsp/README.md | 23 ++- vsp-0.1.2/vsp/build/vignette.rds |binary vsp-0.1.2/vsp/inst/doc/bff.R | 2 vsp-0.1.2/vsp/inst/doc/bff.Rmd | 4 vsp-0.1.2/vsp/inst/doc/bff.html | 10 - vsp-0.1.2/vsp/man/bind_varimax_z.Rd | 8 - vsp-0.1.2/vsp/man/figures/README-unnamed-chunk-1-1.png |binary vsp-0.1.2/vsp/man/figures/README-unnamed-chunk-4-1.png |binary vsp-0.1.2/vsp/man/figures/README-unnamed-chunk-5-1.png |binary vsp-0.1.2/vsp/man/figures/README-unnamed-chunk-6-1.png |binary vsp-0.1.2/vsp/man/figures/README-unnamed-chunk-7-1.png |binary vsp-0.1.2/vsp/man/figures/README-unnamed-chunk-8-1.png |binary vsp-0.1.2/vsp/man/get_svd_u.Rd | 20 ++- vsp-0.1.2/vsp/man/get_z_hubs.Rd | 13 ++ vsp-0.1.2/vsp/man/plot_varimax_z_pairs.Rd | 29 +++- vsp-0.1.2/vsp/man/set_z_factor_names.Rd | 4 vsp-0.1.2/vsp/man/vsp-package.Rd | 2 vsp-0.1.2/vsp/man/vsp.Rd | 14 +- vsp-0.1.2/vsp/man/vsp.svd_like.Rd | 8 + vsp-0.1.2/vsp/man/vsp_fa.Rd | 2 vsp-0.1.2/vsp/vignettes/bff.Rmd | 4 31 files changed, 285 insertions(+), 137 deletions(-)
Title: Model-Agnostic Interpretations with Forward Marginal Effects
Description: Create local, regional, and global explanations for any machine learning model with forward marginal effects. You provide a model and data, and 'fmeffects' computes feature effects. The package is based on the theory in: C. A. Scholbeck, G. Casalicchio, C. Molnar, B. Bischl, and C. Heumann (2022) <doi:10.48550/arXiv.2201.08837>.
Author: Holger Loewe [cre, aut],
Christian Scholbeck [aut],
Christian Heumann [rev],
Bernd Bischl [rev],
Giuseppe Casalicchio [rev]
Maintainer: Holger Loewe <hbj.loewe@gmail.com>
Diff between fmeffects versions 0.1.3 dated 2024-06-07 and 0.1.4 dated 2024-11-05
DESCRIPTION | 6 +- MD5 | 10 +-- NEWS.md | 4 + R/FME.R | 3 - R/FMEPlot.R | 10 +-- inst/doc/fmeffects.html | 130 +++++++++++++++++++++++++++++++++++++----------- 6 files changed, 118 insertions(+), 45 deletions(-)
Title: Risk-Based Control Charts
Description: Univariate and multivariate versions of risk-based control charts. Univariate versions of control charts, such as the risk-based version of X-bar, Moving Average (MA), Exponentially Weighted Moving Average Control Charts (EWMA), and Cumulative Sum Control Charts (CUSUM) charts. The risk-based version of the multivariate T2 control chart. Plot and summary functions. Kosztyan et. al. (2016) <doi:10.1016/j.eswa.2016.06.019>.
Author: Aamir Saghir [aut],
Attila Imre Katona [aut],
Zsolt Tibor Kosztyan [aut, cre]
Maintainer: Zsolt Tibor Kosztyan <kosztyan.zsolt@gtk.uni-pannon.hu>
Diff between rbcc versions 0.1.2 dated 2024-10-17 and 0.1.3 dated 2024-11-05
DESCRIPTION | 6 +- MD5 | 24 +++++------ R/plot.rbcc.R | 4 - R/rbcc.R | 18 ++++---- R/rbcc_opt.R | 115 +++++++++++++++++++++++++++--------------------------- R/rbcusumcc.R | 8 +-- R/rbcusumcc_opt.R | 76 +++++++++++++++++------------------ R/rbewmacc.R | 23 ++++++---- R/rbewmacc_opt.R | 76 +++++++++++++++++------------------ R/rbmacc.R | 21 +++++++-- R/rbmacc_opt.R | 76 +++++++++++++++++------------------ R/summary.rbcc.R | 16 +++---- inst/NEWS | 5 ++ 13 files changed, 245 insertions(+), 223 deletions(-)
Title: Identification of Cell Types, Inference of Lineage Trees, and
Prediction of Noise Dynamics from Single-Cell RNA-Seq Data
Description: Application of 'RaceID' allows inference of cell types and prediction of lineage trees by the 'StemID2' algorithm (Herman, J.S., Sagar, Grun D. (2018) <DOI:10.1038/nmeth.4662>). 'VarID2' is part of this package and allows quantification of biological gene expression noise at single-cell resolution (Rosales-Alvarez, R.E., Rettkowski, J., Herman, J.S., Dumbovic, G., Cabezas-Wallscheid, N., Grun, D. (2023) <DOI:10.1186/s13059-023-02974-1>).
Author: Dominic Gruen [aut, cre]
Maintainer: Dominic Gruen <dominic.gruen@gmail.com>
Diff between RaceID versions 0.3.7 dated 2024-11-01 and 0.3.8 dated 2024-11-05
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/VarID_functions.R | 1 + inst/doc/RaceID.html | 14 +++++++------- 4 files changed, 15 insertions(+), 14 deletions(-)
Title: Simple Features for R
Description: Support for simple features, a standardized way to
encode spatial vector data. Binds to 'GDAL' for reading and writing
data, to 'GEOS' for geometrical operations, and to 'PROJ' for
projection conversions and datum transformations. Uses by default the 's2'
package for spherical geometry operations on ellipsoidal (long/lat) coordinates.
Author: Edzer Pebesma [aut, cre] ,
Roger Bivand [ctb] ,
Etienne Racine [ctb],
Michael Sumner [ctb],
Ian Cook [ctb],
Tim Keitt [ctb],
Robin Lovelace [ctb],
Hadley Wickham [ctb],
Jeroen Ooms [ctb] ,
Kirill Mueller [ctb],
Thomas Lin Pedersen [ctb],
Dan Baston [c [...truncated...]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between sf versions 1.0-18 dated 2024-10-11 and 1.0-19 dated 2024-11-05
DESCRIPTION | 6 +-- MD5 | 74 ++++++++++++++++++++++---------------------- NEWS.md | 14 +++++++- R/RcppExports.R | 6 +-- R/bbox.R | 2 - R/gdal_utils.R | 6 ++- R/geom-transformers.R | 55 ++++++++++++++++++++------------ R/init.R | 1 R/sfc.R | 9 +---- R/spatstat.R | 9 ++--- R/stars.R | 7 ++-- R/wkt.R | 9 ++++- inst/doc/sf1.Rmd | 4 +- inst/doc/sf1.html | 22 ++++++------- inst/doc/sf2.html | 6 +-- inst/doc/sf4.html | 2 - inst/doc/sf5.html | 2 - inst/doc/sf7.Rmd | 2 - inst/doc/sf7.html | 12 +++---- inst/docker/gdal/Dockerfile | 5 +- man/gdal.Rd | 9 ++++- man/gdal_utils.Rd | 5 ++ man/geos_unary.Rd | 45 +++++++++++++++++--------- man/st_as_sfc.Rd | 2 - man/st_as_text.Rd | 9 ++++- src/RcppExports.cpp | 13 ++++--- src/gdal_geom.cpp | 17 +++++++--- src/gdal_utils.cpp | 4 +- src/geos.cpp | 3 + src/sfc-sfg.cpp | 15 +++++--- src/stars.cpp | 55 +++++++++++++++++++++++--------- tests/geos.R | 14 +++++++- tests/geos.Rout.save | 22 ++++++++++--- tests/sfc.R | 5 ++ tests/sfc.Rout.save | 10 +++++ tests/spatstat.R | 23 +++++++++++++ vignettes/sf1.Rmd | 4 +- vignettes/sf7.Rmd | 2 - 38 files changed, 336 insertions(+), 174 deletions(-)
Title: Analise multivariada (brazilian portuguese)
Description: Analise multivariada, tendo funcoes que executam analise de correspondencia simples (CA) e multipla (MCA), analise de componentes principais (PCA), analise de correlacao canonica (CCA), analise fatorial (FA), escalonamento multidimensional (MDS), analise discriminante linear (LDA) e quadratica (QDA), analise de cluster hierarquico e nao hierarquico, regressao linear simples e multipla, analise de multiplos fatores (MFA) para dados quantitativos, qualitativos, de frequencia (MFACT) e dados mistos, biplot, scatter plot, projection pursuit (PP), grant tour e outras funcoes uteis para a analise multivariada.
Author: Paulo Cesar Ossani [aut, cre] ,
Marcelo Angelo Cirillo [aut]
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between MVar.pt versions 2.2.2 dated 2024-06-21 and 2.2.3 dated 2024-11-05
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ R/PP_Index.R | 2 +- R/PP_Optimizer.R | 4 ++-- R/Plot.MFA.R | 8 ++++---- R/Plot.PCA.R | 4 ++-- man/MVar.pt-package.Rd | 4 ++-- 7 files changed, 22 insertions(+), 22 deletions(-)
Title: Multivariate Analysis
Description: Multivariate analysis, having functions that perform simple correspondence analysis (CA) and multiple correspondence analysis (MCA), principal components analysis (PCA), canonical correlation analysis (CCA), factorial analysis (FA), multidimensional scaling (MDS), linear (LDA) and quadratic discriminant analysis (QDA), hierarchical and non-hierarchical cluster analysis, simple and multiple linear regression, multiple factor analysis (MFA) for quantitative, qualitative, frequency (MFACT) and mixed data, biplot, scatter plot, projection pursuit (PP), grant tour method and other useful functions for the multivariate analysis.
Author: Paulo Cesar Ossani [aut, cre] ,
Marcelo Angelo Cirillo [aut]
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between MVar versions 2.2.2 dated 2024-06-21 and 2.2.3 dated 2024-11-05
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ R/PP_Index_English.R | 2 +- R/PP_Optimizer_English.R | 6 +++--- R/Plot.MFA_English.R | 8 ++++---- R/Plot.PCA_English.R | 4 ++-- man/MVar-package.Rd | 4 ++-- 7 files changed, 23 insertions(+), 23 deletions(-)
Title: Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic
Phenomena
Description: Statistical methods for the modeling and monitoring of time series
of counts, proportions and categorical data, as well as for the modeling
of continuous-time point processes of epidemic phenomena.
The monitoring methods focus on aberration detection in count data time
series from public health surveillance of communicable diseases, but
applications could just as well originate from environmetrics,
reliability engineering, econometrics, or social sciences. The package
implements many typical outbreak detection procedures such as the
(improved) Farrington algorithm, or the negative binomial GLR-CUSUM
method of Hoehle and Paul (2008) <doi:10.1016/j.csda.2008.02.015>.
A novel CUSUM approach combining logistic and multinomial logistic
modeling is also included. The package contains several real-world data
sets, the ability to simulate outbreak data, and to visualize the
results of the monitoring in a temporal, spatial or spatio-temporal
fashion. A recent overview of the available mon [...truncated...]
Author: Michael Hoehle [aut, ths] ,
Sebastian Meyer [aut, cre] ,
Michaela Paul [aut],
Leonhard Held [ctb, ths] ,
Howard Burkom [ctb],
Thais Correa [ctb],
Mathias Hofmann [ctb],
Christian Lang [ctb],
Juliane Manitz [ctb],
Sophie Reichert [ctb],
Andrea Riebler [...truncated...]
Maintainer: Sebastian Meyer <seb.meyer@fau.de>
Diff between surveillance versions 1.24.0 dated 2024-10-01 and 1.24.1 dated 2024-11-05
surveillance-1.24.0/surveillance/inst/doc/monitoringCounts-fPlot.R |only surveillance-1.24.0/surveillance/vignettes/monitoringCounts-fPlot1.pdf |only surveillance-1.24.0/surveillance/vignettes/monitoringCounts-fPlot2.pdf |only surveillance-1.24.0/surveillance/vignettes/surveillance-hmm.pdf |only surveillance-1.24.1/surveillance/DESCRIPTION | 8 - surveillance-1.24.1/surveillance/MD5 | 55 +++++----- surveillance-1.24.1/surveillance/NEWS.md | 21 +++ surveillance-1.24.1/surveillance/R/sts.R | 2 surveillance-1.24.1/surveillance/R/twinstim_siaf.R | 35 ++---- surveillance-1.24.1/surveillance/README.md |only surveillance-1.24.1/surveillance/build/partial.rdb |binary surveillance-1.24.1/surveillance/inst/doc/glrnb.pdf |binary surveillance-1.24.1/surveillance/inst/doc/hhh4.pdf |binary surveillance-1.24.1/surveillance/inst/doc/hhh4_spacetime.pdf |binary surveillance-1.24.1/surveillance/inst/doc/monitoringCounts.Rnw | 4 surveillance-1.24.1/surveillance/inst/doc/monitoringCounts.pdf |binary surveillance-1.24.1/surveillance/inst/doc/surveillance.Rnw | 2 surveillance-1.24.1/surveillance/inst/doc/surveillance.pdf |binary surveillance-1.24.1/surveillance/inst/doc/twinSIR.pdf |binary surveillance-1.24.1/surveillance/inst/doc/twinstim.pdf |binary surveillance-1.24.1/surveillance/man/create.disProg.Rd | 3 surveillance-1.24.1/surveillance/man/stsplot_spacetime.Rd | 9 - surveillance-1.24.1/surveillance/man/surveillance-defunct.Rd | 17 ++- surveillance-1.24.1/surveillance/tests/testthat/test-formatDate.R | 4 surveillance-1.24.1/surveillance/tests/testthat/test-siafs.R | 11 -- surveillance-1.24.1/surveillance/tests/testthat/test-twinstim_misc.R | 6 - surveillance-1.24.1/surveillance/tests/tinytest.R | 9 + surveillance-1.24.1/surveillance/vignettes/figures |only surveillance-1.24.1/surveillance/vignettes/monitoringCounts.Rnw | 4 surveillance-1.24.1/surveillance/vignettes/surveillance.Rnw | 2 30 files changed, 108 insertions(+), 84 deletions(-)
Title: Mander and Thompson Designs
Description: Implements Mander & Thompson's (2010)
<doi:10.1016/j.cct.2010.07.008> methods for two-stage designs
optimal under the alternative hypothesis for phase II [cancer] trials. Also
provides an implementation of Simon's (1989)
<doi:10.1016/0197-2456(89)90015-9> original methodology and
allows exploration of the operating characteristics of sub-optimal designs.
Author: John Kirkpatrick [aut, cre]
Maintainer: John Kirkpatrick <mtdesign@puzzledface.net>
Diff between mtdesign versions 0.1.0 dated 2022-10-27 and 0.1.2 dated 2024-11-05
DESCRIPTION | 18 +++---- MD5 | 14 ++--- NEWS.md | 9 ++- R/functions.R | 91 ++++++++++++++++++------------------- README.md | 19 +++---- inst/WORDLIST | 39 +++++++++++---- tests/testthat/test-createGrid.R | 12 ++++ tests/testthat/test-obtainDesign.R | 2 8 files changed, 119 insertions(+), 85 deletions(-)
Title: Package Admix for Admixture (aka Contamination) Models
Description: Implements techniques to estimate the unknown quantities
related to two-component admixture models, where the two components
can belong to any distribution (note that in the case of multinomial
mixtures, the two components must belong to the same family).
Estimation methods depend on the assumptions made on the unknown
component density; see Bordes and Vandekerkhove (2010)
<doi:10.3103/S1066530710010023>, Patra and Sen (2016)
<doi:10.1111/rssb.12148>, and Milhaud, Pommeret, Salhi, Vandekerkhove
(2024) <doi:10.3150/23-BEJ1593>. In practice, one can estimate both
the mixture weight and the unknown component density in a wide variety
of frameworks. On top of that, hypothesis tests can be performed in
one and two-sample contexts to test the unknown component density (see
Milhaud, Pommeret, Salhi and Vandekerkhove (2022)
<doi:10.1016/j.jspi.2021.05.010>, and Milhaud, Pommeret, Salhi,
Vandekerkhove (2024) <doi:10.3150/23-BEJ1593>). Finally, clustering of
unknown [...truncated...]
Author: Xavier Milhaud [aut, cre],
Pierre Vandekerkhove [ctb],
Denys Pommeret [ctb],
Yahia Salhi [ctb]
Maintainer: Xavier Milhaud <xavier.milhaud.research@gmail.com>
Diff between admix versions 2.3.1 dated 2024-10-24 and 2.3.2 dated 2024-11-05
admix-2.3.1/admix/R/BVdk_varCov_estimators.R |only admix-2.3.1/admix/R/IBM_estimVarCov_gaussVect.R |only admix-2.3.1/admix/man/BVdk_varCov_estimators.Rd |only admix-2.3.2/admix/DESCRIPTION | 6 admix-2.3.2/admix/MD5 | 87 - admix-2.3.2/admix/NAMESPACE | 1 admix-2.3.2/admix/R/IBM_k_samples_test.R | 106 - admix-2.3.2/admix/R/admix_cluster.R | 80 admix-2.3.2/admix/R/admix_estim.R | 139 + admix-2.3.2/admix/R/admix_model.R | 8 admix-2.3.2/admix/R/admix_test.R | 81 admix-2.3.2/admix/R/decontaminated_density.R | 29 admix-2.3.2/admix/R/estim_BVdk.R | 365 ++++ admix-2.3.2/admix/R/estim_IBM.R | 991 +++++++++++- admix-2.3.2/admix/R/estim_PS.R | 43 admix-2.3.2/admix/R/gaussianity_test.R | 86 - admix-2.3.2/admix/R/orthobasis_test.R | 117 - admix-2.3.2/admix/R/twoComp_mixt.R | 28 admix-2.3.2/admix/R/utils.R | 8 admix-2.3.2/admix/build/partial.rdb |binary admix-2.3.2/admix/inst/doc/admixture-clustering.R | 4 admix-2.3.2/admix/inst/doc/admixture-clustering.Rmd | 4 admix-2.3.2/admix/inst/doc/admixture-clustering.html | 6 admix-2.3.2/admix/inst/doc/admixture-weight-estimation.R | 14 admix-2.3.2/admix/inst/doc/admixture-weight-estimation.Rmd | 14 admix-2.3.2/admix/inst/doc/admixture-weight-estimation.html | 66 admix-2.3.2/admix/inst/doc/test-hypothesis.R | 23 admix-2.3.2/admix/inst/doc/test-hypothesis.Rmd | 27 admix-2.3.2/admix/inst/doc/test-hypothesis.html | 56 admix-2.3.2/admix/man/IBM_k_samples_test.Rd | 32 admix-2.3.2/admix/man/IBM_tabul_stochasticInteg.Rd | 23 admix-2.3.2/admix/man/admix_cluster.Rd | 39 admix-2.3.2/admix/man/admix_estim.Rd | 43 admix-2.3.2/admix/man/admix_test.Rd | 51 admix-2.3.2/admix/man/decontaminated_cdf.Rd | 5 admix-2.3.2/admix/man/decontaminated_density.Rd | 6 admix-2.3.2/admix/man/estim_BVdk.Rd | 12 admix-2.3.2/admix/man/estim_IBM.Rd | 12 admix-2.3.2/admix/man/estim_PS.Rd | 24 admix-2.3.2/admix/man/gaussianity_test.Rd | 31 admix-2.3.2/admix/man/orthobasis_test.Rd | 49 admix-2.3.2/admix/man/plot.decontaminated_density.Rd | 18 admix-2.3.2/admix/man/twoComp_mixt.Rd | 20 admix-2.3.2/admix/vignettes/admixture-clustering.Rmd | 4 admix-2.3.2/admix/vignettes/admixture-weight-estimation.Rmd | 14 admix-2.3.2/admix/vignettes/test-hypothesis.Rmd | 27 46 files changed, 2059 insertions(+), 740 deletions(-)
Title: Read and Write ODS Files
Description: Read ODS (OpenDocument Spreadsheet) into R as data frame. Also support writing data frame into ODS file.
Author: Gerrit-Jan Schutten [aut],
Chung-hong Chan [aut, cre] ,
Peter Brohan [aut],
Detlef Steuer [aut] ,
Thomas J. Leeper [aut] ,
John Foster [ctb],
Sergio Oller [ctb],
Jim Hester [ctb] ,
Stephen Watts [ctb],
Arthur Katossky [ctb],
Stas Malavin [ctb],
Dunca [...truncated...]
Maintainer: Chung-hong Chan <chainsawtiney@gmail.com>
Diff between readODS versions 2.3.0 dated 2024-05-26 and 2.3.1 dated 2024-11-05
readODS-2.3.0/readODS/inst/include |only readODS-2.3.0/readODS/src/Makevars |only readODS-2.3.1/readODS/DESCRIPTION | 9 ++-- readODS-2.3.1/readODS/MD5 | 51 ++++++------------------- readODS-2.3.1/readODS/NEWS.md | 9 ++++ readODS-2.3.1/readODS/R/read_ods.R | 2 readODS-2.3.1/readODS/R/write_ods.R | 2 readODS-2.3.1/readODS/build/vignette.rds |binary readODS-2.3.1/readODS/inst/WORDLIST | 3 + readODS-2.3.1/readODS/inst/doc/overview.R | 6 -- readODS-2.3.1/readODS/inst/doc/overview.Rmd | 4 - readODS-2.3.1/readODS/man/readODS-package.Rd | 1 readODS-2.3.1/readODS/man/read_ods.Rd | 2 readODS-2.3.1/readODS/man/write_ods.Rd | 2 readODS-2.3.1/readODS/tests/testthat/test_na.R | 4 - readODS-2.3.1/readODS/vignettes/overview.Rmd | 4 - 16 files changed, 41 insertions(+), 58 deletions(-)
Title: High Dimensional Categorical Data Visualization
Description: Easy visualization for datasets with more than two categorical variables and additional continuous variables. 'diceplot' is particularly useful for exploring complex categorical data in the context of pathway analysis across multiple conditions. For a detailed documentation please visit <https://dice-and-domino-plot.readthedocs.io/en/latest/>.
Author: Matthias Flotho [aut, cre]
Maintainer: Matthias Flotho <matthias.flotho@ccb.uni-saarland.de>
Diff between diceplot versions 0.1.2 dated 2024-10-28 and 0.1.3 dated 2024-11-05
DESCRIPTION | 6 ++-- MD5 | 9 +++--- R/diceplot.R | 72 +++++++++++++++++++++++++++++++++++++++++++++++-------- R/utils.R | 5 ++- inst |only man/dice_plot.Rd | 9 ++++-- 6 files changed, 79 insertions(+), 22 deletions(-)
Title: A Modern and Flexible Web Client for R
Description: Bindings to 'libcurl' <https://curl.se/libcurl/> for performing fully
configurable HTTP/FTP requests where responses can be processed in memory, on
disk, or streaming via the callback or connection interfaces. Some knowledge
of 'libcurl' is recommended; for a more-user-friendly web client see the
'httr2' package which builds on this package with http specific tools and logic.
Author: Jeroen Ooms [aut, cre] ,
Hadley Wickham [ctb],
Posit Software, PBC [cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between curl versions 5.2.3 dated 2024-09-20 and 6.0.0 dated 2024-11-05
DESCRIPTION | 35 +++---- LICENSE | 4 MD5 | 152 ++++++++++++++++--------------- NAMESPACE | 2 NEWS | 13 ++ R/curl.R | 12 +- R/download.R | 20 ++-- R/email.R | 48 ++++----- R/errcodes.R |only R/fetch.R | 29 ++--- R/form.R | 4 R/handle.R | 23 ++-- R/multi.R | 48 ++++----- R/multi_download.R | 59 ++++++++---- R/nslookup.R | 6 - R/onload.R | 9 + R/options.R | 6 - R/parser.R |only R/sysdata.rda |binary R/upload.R | 10 +- R/utilities.R | 27 ++++- R/writer.R | 6 - build/vignette.rds |binary cleanup | 1 configure | 20 ++-- inst/WORDLIST | 8 + inst/doc/intro.R | 10 +- inst/doc/intro.Rmd | 10 +- inst/doc/intro.html | 161 +++++++++++++++++---------------- inst/doc/windows.Rmd | 14 +- inst/doc/windows.html | 28 ++--- man/curl.Rd | 8 - man/curl_download.Rd | 6 - man/curl_fetch.Rd | 27 ++--- man/curl_parse_url.Rd |only man/curl_upload.Rd | 8 - man/handle.Rd | 11 -- man/multi_download.Rd | 9 + man/parse_date.Rd | 2 man/send_mail.Rd | 16 +-- src/curl-common.h | 33 +++++- src/curl.c | 56 ++++------- src/download.c | 8 - src/handle.c | 170 ++++++++++++++++++----------------- src/init.c | 8 + src/interrupt.c | 32 ++++-- src/macos-polyfill.h |only src/multi.c | 21 ---- src/ssl.c | 2 src/urlparser.c |only src/utils.c | 63 ++++-------- src/version.c | 60 ++++++------ tests/testthat/test-auth.R | 1 tests/testthat/test-blockopen.R | 2 tests/testthat/test-certificates.R | 4 tests/testthat/test-connection.R | 4 tests/testthat/test-cookies.R | 2 tests/testthat/test-echo.R | 2 tests/testthat/test-escape.R | 2 tests/testthat/test-gc.R | 2 tests/testthat/test-handle.R | 19 ++- tests/testthat/test-idn.R | 2 tests/testthat/test-multi-download.R | 16 ++- tests/testthat/test-multi.R | 14 -- tests/testthat/test-nonblocking.R | 2 tests/testthat/test-parser.R |only tests/testthat/test-path.R | 3 tests/testthat/test-post.R | 2 tests/testthat/test-progress.R | 2 tests/testthat/test-seek.R | 2 tests/testthat/test-upload.R | 2 tests/testthat/test-winssl.R | 2 tests/testthat/test-writer.R | 2 tools/ada.tar.gz |only tools/errorcodes.txt |only tools/make-errorcodes.R |only tools/symbols-in-versions | 124 ++++++++++++++++++------- tools/symbols.R | 23 ++-- tools/testversion.R |only tools/winlibs.R | 6 - vignettes/intro.Rmd | 10 +- vignettes/windows.Rmd | 14 +- 82 files changed, 852 insertions(+), 717 deletions(-)
Title: Data Sets for Mathematical Statistics with Resampling in R
Description: Package of data sets from "Mathematical Statistics
with Resampling in R" (1st Ed. 2011, 2nd Ed. 2018) by Laura Chihara and Tim Hesterberg.
Author: Laura Chihara [aut],
Tim Hesterberg [aut],
Albert Y. Kim [aut, cre]
Maintainer: Albert Y. Kim <albert.ys.kim@gmail.com>
Diff between resampledata versions 0.3.1 dated 2019-08-30 and 0.3.2 dated 2024-11-05
DESCRIPTION | 13 +-- MD5 | 129 +++++++++++++++--------------- NEWS.md | 16 ++- R/data.R | 184 +------------------------------------------- R/resampledata.R | 6 - inst/CITATION | 32 ++----- man/Alelager.Rd | 9 -- man/Bangladesh.Rd | 11 +- man/Batters2005.Rd | 7 - man/Beerwings.Rd | 7 - man/BookPrices.Rd | 7 - man/Bushmeat.Rd | 7 - man/Bushmeat2.Rd | 7 - man/Cameras.Rd | 7 - man/Cereals.Rd | 7 - man/Challenger.Rd | 7 - man/ChiMarathonMen.Rd | 7 - man/Cuckoos.Rd | 7 - man/Diving2017.Rd | 7 - man/Fatalities.Rd | 7 - man/FishMercury.Rd | 7 - man/FlightDelays.Rd | 7 - man/GSS2002.Rd | 7 - man/GSS2006.Rd | 7 - man/Girls2004.Rd | 7 - man/Groceries.Rd | 7 - man/ILBoys.Rd | 7 - man/IceCream.Rd | 7 - man/Illiteracy.Rd | 7 - man/Lottery.Rd | 7 - man/MathAnxiety.Rd | 7 - man/Maunaloa.Rd | 7 - man/MnGroundwater.Rd | 7 - man/MobileAds.Rd | 7 - man/NBA1617.Rd | 7 - man/NCBirths2004.Rd | 7 - man/Nasdaq.Rd | 7 - man/Olympics2012.Rd | 7 - man/Phillies2009.Rd | 7 - man/Pitchers2005.Rd | 7 - man/Quakes.Rd | 7 - man/Quetzal.Rd | 7 - man/RangersTwins2016.Rd | 7 - man/Reading.Rd | 7 - man/Recidivism.Rd | 7 - man/Salaries.Rd | 7 - man/Sat2008.Rd | 7 - man/Service.Rd | 7 - man/Skateboard.Rd | 7 - man/Skating2010.Rd | 7 - man/Spruce.Rd | 7 - man/Starcraft.Rd | 7 - man/TV.Rd | 7 - man/TXBirths2004.Rd | 7 - man/Titanic.Rd | 7 - man/Turbine.Rd | 7 - man/Verizon.Rd | 7 - man/Volleyball2009.Rd | 7 - man/Walleye.Rd | 7 - man/Watertable.Rd | 7 - man/corrExerciseA.Rd | 7 - man/corrExerciseB.Rd | 7 - man/manatees.Rd | 7 - man/resampledata-package.Rd |only man/resampledata.Rd | 4 man/wafers.Rd | 7 - 66 files changed, 279 insertions(+), 517 deletions(-)
Title: Tools for Binning Data
Description: Manually bin data using weight of evidence and information value. Includes other binning
methods such as equal length, quantile and winsorized. Options for combining levels of categorical
data are also available. Dummy variables can be generated based on the bins created using any of
the available binning methods. References: Siddiqi, N. (2006) <doi:10.1002/9781119201731.biblio>.
Author: Aravind Hebbali [aut, cre]
Maintainer: Aravind Hebbali <hebbali.aravind@gmail.com>
Diff between rbin versions 0.2.0 dated 2020-05-14 and 0.2.1 dated 2024-11-05
rbin-0.2.0/rbin/tools/README-equal_length-2.png |only rbin-0.2.0/rbin/tools/README-factor-2.png |only rbin-0.2.0/rbin/tools/README-manual-2.png |only rbin-0.2.0/rbin/tools/README-quantile-2.png |only rbin-0.2.0/rbin/tools/README-winsorize-2.png |only rbin-0.2.1/rbin/DESCRIPTION | 11 rbin-0.2.1/rbin/MD5 | 78 rbin-0.2.1/rbin/NAMESPACE | 2 rbin-0.2.1/rbin/NEWS.md | 4 rbin-0.2.1/rbin/R/rbin-addins.R | 616 rbin-0.2.1/rbin/R/rbin-equal-freq.R | 18 rbin-0.2.1/rbin/R/rbin-equal-length.R | 2 rbin-0.2.1/rbin/R/rbin-factor.R | 13 rbin-0.2.1/rbin/R/rbin-manual.R | 8 rbin-0.2.1/rbin/R/rbin-quantile.R | 8 rbin-0.2.1/rbin/R/rbin-winsorize.R | 2 rbin-0.2.1/rbin/R/rbin.R | 5 rbin-0.2.1/rbin/R/utils.R | 24 rbin-0.2.1/rbin/README.md | 52 rbin-0.2.1/rbin/build/vignette.rds |binary rbin-0.2.1/rbin/inst/doc/introduction.R | 2 rbin-0.2.1/rbin/inst/doc/introduction.html |57272 +++++++++++----------- rbin-0.2.1/rbin/man/rbin.Rd | 15 rbin-0.2.1/rbin/man/rbinAddin.Rd | 2 rbin-0.2.1/rbin/tests/figs/deps.txt | 2 rbin-0.2.1/rbin/tests/figs/test-plots/ef-plot.svg | 136 rbin-0.2.1/rbin/tests/figs/test-plots/el-plot.svg | 144 rbin-0.2.1/rbin/tests/figs/test-plots/fl-plot.svg | 112 rbin-0.2.1/rbin/tests/figs/test-plots/ml-plot.svg | 140 rbin-0.2.1/rbin/tests/figs/test-plots/ql-plot.svg | 140 rbin-0.2.1/rbin/tests/figs/test-plots/wl-plot.svg | 148 rbin-0.2.1/rbin/tests/testthat.R | 16 rbin-0.2.1/rbin/tests/testthat/_snaps |only rbin-0.2.1/rbin/tests/testthat/test-bins.R | 66 rbin-0.2.1/rbin/tests/testthat/test-plots.R | 4 rbin-0.2.1/rbin/tools/README-equal_length-1.png |binary rbin-0.2.1/rbin/tools/README-factor-1.png |binary rbin-0.2.1/rbin/tools/README-manual-1.png |binary rbin-0.2.1/rbin/tools/README-quantile-1.png |binary rbin-0.2.1/rbin/tools/README-winsorize-1.png |binary 40 files changed, 29574 insertions(+), 29468 deletions(-)
Title: 'Coroutines' for R
Description: Provides 'coroutines' for R, a family of functions that can
be suspended and resumed later on. This includes 'async' functions
(which await) and generators (which yield). 'Async' functions are
based on the concurrency framework of the 'promises' package.
Generators are based on a dependency free iteration protocol defined
in 'coro' and are compatible with iterators from the 'reticulate'
package.
Author: Lionel Henry [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Lionel Henry <lionel@posit.co>
Diff between coro versions 1.0.5 dated 2024-10-15 and 1.1.0 dated 2024-11-05
DESCRIPTION | 6 MD5 | 44 ++--- NEWS.md | 20 ++ R/generator.R | 99 ++++++++++- R/iterator-collect.R | 2 R/iterator.R | 21 ++ R/parser.R | 13 - R/step-reduce.R | 3 R/utils.R | 5 inst/doc/generator.html | 4 man/coro-package.Rd | 1 man/generator.Rd | 10 - man/iterator.Rd | 14 + tests/testthat/_snaps/async.md | 10 - tests/testthat/_snaps/generator.md | 4 tests/testthat/_snaps/parser-block.md | 130 ++++++++++++++- tests/testthat/_snaps/parser-if.md | 34 ++-- tests/testthat/_snaps/parser-loop.md | 46 +++-- tests/testthat/_snaps/parser.md | 83 +++++---- tests/testthat/test-async.R | 44 +++++ tests/testthat/test-generator.R | 285 ++++++++++++++++++++++++++-------- tests/testthat/test-parser-block.R | 4 tests/testthat/test-parser-if.R | 1 23 files changed, 685 insertions(+), 198 deletions(-)
Title: Weighting for Covariate Balance in Observational Studies
Description: Generates balancing weights for causal effect estimation in observational studies with
binary, multi-category, or continuous point or longitudinal treatments by easing and
extending the functionality of several R packages and providing in-house estimation methods.
Available methods include those that rely on parametric modeling, optimization, and machine learning. Also
allows for assessment of weights and checking of covariate balance by interfacing directly
with the 'cobalt' package. Methods for estimating weighted regression models that take into account
uncertainty in the estimation of the weights via M-estimation or bootstrapping are available. See the vignette "Installing Supporting Packages" for instructions on how
to install any package 'WeightIt' uses, including those that may not be on CRAN.
Author: Noah Greifer [aut, cre]
Maintainer: Noah Greifer <noah.greifer@gmail.com>
Diff between WeightIt versions 1.3.1 dated 2024-10-04 and 1.3.2 dated 2024-11-05
DESCRIPTION | 6 MD5 | 48 ++--- NEWS.md | 6 R/functions_for_processing.R | 121 +++++++++---- R/glm_weightit.R | 5 R/glm_weightit_helpers.R | 2 R/multinom_weightit.R | 1 R/ordinal_weightit.R | 8 R/utils.R | 25 ++ R/weightit2bart.R | 12 - R/weightit2cbps.R | 28 +-- R/weightit2gbm.R | 20 +- R/weightit2glm.R | 18 - R/weightit2ps.R | 12 - R/weightit2super.R | 20 +- README.md | 6 build/stage23.rdb |binary inst/doc/WeightIt.html | 4 inst/doc/estimating-effects.html | 4 inst/doc/installing-packages.html | 4 tests/testthat/test-glm_weightit.R | 26 +- tests/testthat/test-method_glm.R | 38 ++-- tests/testthat/test-multinom_weightit.R | 12 - tests/testthat/test-ordinal_weightit.R | 14 - tests/testthat/test-vcov_arg.R | 291 +++++++++++++++++++++----------- 25 files changed, 454 insertions(+), 277 deletions(-)
Title: Pathway Testing for Longitudinal Omics
Description: A self-contained hypothesis is tested for a given pathway of longitudinal omics. 'SlaPMEG' is a two-step procedure. First, a shared latent process mixed model is fitted over the longitudinal measures of omics in a pathway. This shared model allows deviation from the shared process at subject level (a random intercept, slope, or both per subject) and also at omic level (a random effect per omic). These random effects summarize the longitudinal trend of the observations which can be used to test for group differences using 'Globaltest' in the second step. If the pathway is large or the shared effect is small, the package fits a series of pairwise models and estimates the shared random effects based on them.
Author: Mitra Ebrahimpoor [aut, cre]
Maintainer: Mitra Ebrahimpoor <mitra.ebrahimpoor@gmail.com>
Diff between SlaPMEG versions 1.0.1 dated 2021-07-05 and 1.0.2 dated 2024-11-05
DESCRIPTION | 18 ++++++++++++------ MD5 | 14 +++++++------- R/multslapmeg.R | 2 +- R/pairslapmeg.R | 4 ++-- R/plotslapmeg.R | 11 +++++++---- R/slapmeg.R | 6 +++--- man/plotslapmeg.Rd | 4 ++-- man/slapmeg.Rd | 2 +- 8 files changed, 35 insertions(+), 26 deletions(-)
Title: Interface for the 'Finnish Biodiversity Information Facility'
API
Description: A programmatic interface to the 'Finnish Biodiversity Information
Facility' ('FinBIF') API (<https://api.laji.fi>). 'FinBIF' aggregates
Finnish biodiversity data from multiple sources in a single open access
portal for researchers, citizen scientists, industry and government.
'FinBIF' allows users of biodiversity information to find, access, combine
and visualise data on Finnish plants, animals and microorganisms. The
'finbif' package makes the publicly available data in 'FinBIF' easily
accessible to programmers. Biodiversity information is available on taxonomy
and taxon occurrence. Occurrence data can be filtered by taxon, time,
location and other variables. The data accessed are conveniently
preformatted for subsequent analyses.
Author: Finnish Museum of Natural History - Luomus [cph],
William K. Morris [aut, cre]
Maintainer: William K. Morris <willi@mmorris.email>
Diff between finbif versions 0.9.8 dated 2024-08-19 and 0.9.9 dated 2024-11-05
finbif-0.9.8/finbif/inst/NEWS.Rd |only finbif-0.9.8/finbif/tests/testthat/laji-data.ods |only finbif-0.9.8/finbif/tests/testthat/laji-data.xlsx |only finbif-0.9.9/finbif/DESCRIPTION | 11 finbif-0.9.9/finbif/MD5 | 87 finbif-0.9.9/finbif/NAMESPACE | 1 finbif-0.9.9/finbif/NEWS.md | 13 finbif-0.9.9/finbif/R/finbif_occurrence.R | 209 finbif-0.9.9/finbif/R/finbif_occurrence_load.R | 86 finbif-0.9.9/finbif/R/finbif_records.R | 115 finbif-0.9.9/finbif/R/sysdata.R | 12 finbif-0.9.9/finbif/R/sysdata.rda |binary finbif-0.9.9/finbif/R/utils.R | 33 finbif-0.9.9/finbif/README.md | 2 finbif-0.9.9/finbif/build/vignette.rds |binary finbif-0.9.9/finbif/inst/doc/finbif.html | 2 finbif-0.9.9/finbif/inst/doc/v02_occurrence_data.html | 2 finbif-0.9.9/finbif/inst/doc/v03_selecting_variables.html | 2 finbif-0.9.9/finbif/inst/doc/v04_metadata.html | 2 finbif-0.9.9/finbif/inst/doc/v05_filtering.html | 2 finbif-0.9.9/finbif/tests/fixtures/finbif_cache_db_timeout.yml | 69 finbif-0.9.9/finbif/tests/fixtures/finbif_cache_file_timeout.yml | 69 finbif-0.9.9/finbif/tests/fixtures/finbif_cache_timeout.yml | 69 finbif-0.9.9/finbif/tests/fixtures/finbif_check_taxa.yml | 16 finbif-0.9.9/finbif/tests/fixtures/finbif_collections.yml | 8825 ++++----- finbif-0.9.9/finbif/tests/fixtures/finbif_informal_groups.yml | 5 finbif-0.9.9/finbif/tests/fixtures/finbif_last_mod1.yml | 6 finbif-0.9.9/finbif/tests/fixtures/finbif_last_mod2.yml | 6 finbif-0.9.9/finbif/tests/fixtures/finbif_last_mod3.yml | 6 finbif-0.9.9/finbif/tests/fixtures/finbif_metadata.yml | 610 finbif-0.9.9/finbif/tests/fixtures/finbif_occurrence.yml | 9597 +++++----- finbif-0.9.9/finbif/tests/fixtures/finbif_occurrence_aggregate.yml | 66 finbif-0.9.9/finbif/tests/fixtures/finbif_occurrence_api_error.yml | 5 finbif-0.9.9/finbif/tests/fixtures/finbif_occurrence_dates.yml | 120 finbif-0.9.9/finbif/tests/fixtures/finbif_occurrence_load.yml | 251 finbif-0.9.9/finbif/tests/fixtures/finbif_occurrence_print.yml | 18 finbif-0.9.9/finbif/tests/fixtures/finbif_taxa.yml | 16 finbif-0.9.9/finbif/tests/testthat/_snaps/caching.md | 93 finbif-0.9.9/finbif/tests/testthat/_snaps/finbif_collections.md | 304 finbif-0.9.9/finbif/tests/testthat/_snaps/finbif_metadata.md | 8 finbif-0.9.9/finbif/tests/testthat/_snaps/finbif_occurrence.md | 96 finbif-0.9.9/finbif/tests/testthat/_snaps/finbif_occurrence_load.md | 290 finbif-0.9.9/finbif/tests/testthat/helper.R | 2 finbif-0.9.9/finbif/tests/testthat/test-finbif_occurrence.R | 9 finbif-0.9.9/finbif/tests/testthat/test-finbif_occurrence_load.R | 16 finbif-0.9.9/finbif/tests/testthat/test-finbif_update_cache.R | 5 46 files changed, 10461 insertions(+), 10695 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-10-21 1.0.4
Title: Fast Change Point Detection via Sequential Gradient Descent
Description: Implements fast change point detection algorithm based on the
paper "Sequential Gradient Descent and Quasi-Newton's Method for
Change-Point Analysis" by Xianyang Zhang, Trisha Dawn
<https://proceedings.mlr.press/v206/zhang23b.html>. The algorithm is
based on dynamic programming with pruning and sequential gradient
descent. It is able to detect change points a magnitude faster than
the vanilla Pruned Exact Linear Time(PELT). The package includes
examples of linear regression, logistic regression, Poisson
regression, penalized linear regression data, and whole lot more
examples with custom cost function in case the user wants to use their
own cost function.
Author: Xingchi Li [aut, cre, cph] ,
Xianyang Zhang [aut, cph]
Maintainer: Xingchi Li <anthony.li@stat.tamu.edu>
Diff between fastcpd versions 0.14.3 dated 2024-04-26 and 0.14.6 dated 2024-11-05
fastcpd-0.14.3/fastcpd/inst/doc/comparison-packages.R |only fastcpd-0.14.3/fastcpd/src/fastcpd_class_cost.cc |only fastcpd-0.14.3/fastcpd/src/fastcpd_class_private.cc |only fastcpd-0.14.3/fastcpd/src/fastcpd_class_public.cc |only fastcpd-0.14.3/fastcpd/src/fastcpd_classes.h |only fastcpd-0.14.3/fastcpd/src/fastcpd_constants.h |only fastcpd-0.14.3/fastcpd/src/fastcpd_impl.h |only fastcpd-0.14.3/fastcpd/src/test-functions.cc |only fastcpd-0.14.3/fastcpd/tests/testthat/examples/fastcpd_ar.R |only fastcpd-0.14.3/fastcpd/tests/testthat/examples/fastcpd_lm.R |only fastcpd-0.14.3/fastcpd/tests/testthat/test-coverage.R |only fastcpd-0.14.3/fastcpd/tests/testthat/test-examples-fastcpd_ar.R |only fastcpd-0.14.3/fastcpd/tests/testthat/test-examples-fastcpd_lm.R |only fastcpd-0.14.3/fastcpd/vignettes/comparison-packages-ar_data-mcp.svg |only fastcpd-0.14.3/fastcpd/vignettes/comparison-packages-mean_data_1-bcp.svg |only fastcpd-0.14.3/fastcpd/vignettes/comparison-packages-mean_data_1-mcp.svg |only fastcpd-0.14.3/fastcpd/vignettes/comparison-packages-mean_data_3-bcp.svg |only fastcpd-0.14.3/fastcpd/vignettes/comparison-packages-mv_data_1-mcp.svg |only fastcpd-0.14.3/fastcpd/vignettes/comparison-packages-well_log-cpts.svg |only fastcpd-0.14.3/fastcpd/vignettes/comparison-packages-well_log-time.svg |only fastcpd-0.14.6/fastcpd/DESCRIPTION | 14 fastcpd-0.14.6/fastcpd/MD5 | 115 fastcpd-0.14.6/fastcpd/NEWS.md | 13 fastcpd-0.14.6/fastcpd/R/fastcpd_class.R | 2 fastcpd-0.14.6/fastcpd/R/fastcpd_wrappers.R | 6 fastcpd-0.14.6/fastcpd/build/vignette.rds |binary fastcpd-0.14.6/fastcpd/inst/doc/comparison-packages.Rmd | 1795 +++++--- fastcpd-0.14.6/fastcpd/inst/doc/comparison-packages.html | 2201 ++++------ fastcpd-0.14.6/fastcpd/inst/doc/comparison-pelt.html | 4 fastcpd-0.14.6/fastcpd/inst/doc/examples-advanced.html | 4 fastcpd-0.14.6/fastcpd/inst/doc/examples-custom-model.html | 4 fastcpd-0.14.6/fastcpd/inst/include |only fastcpd-0.14.6/fastcpd/man/fastcpd.Rd | 29 fastcpd-0.14.6/fastcpd/man/fastcpd_ar.Rd | 13 fastcpd-0.14.6/fastcpd/man/fastcpd_lm.Rd | 3 fastcpd-0.14.6/fastcpd/man/fastcpd_meanvariance.Rd | 28 fastcpd-0.14.6/fastcpd/man/well_log.Rd | 1 fastcpd-0.14.6/fastcpd/src/Makevars | 2 fastcpd-0.14.6/fastcpd/src/Makevars.win | 2 fastcpd-0.14.6/fastcpd/src/fastcpd_class.cc |only fastcpd-0.14.6/fastcpd/src/fastcpd_class.h |only fastcpd-0.14.6/fastcpd/src/fastcpd_class_nll.cc | 363 + fastcpd-0.14.6/fastcpd/src/fastcpd_impl.cc | 48 fastcpd-0.14.6/fastcpd/src/fastcpd_test.cc |only fastcpd-0.14.6/fastcpd/src/fastcpd_test.h |only fastcpd-0.14.6/fastcpd/src/fastcpd_types.h | 64 fastcpd-0.14.6/fastcpd/src/fastcpd_wrapper.h |only fastcpd-0.14.6/fastcpd/src/test-fastcpd.cc |only fastcpd-0.14.6/fastcpd/tests/testthat/examples/data-well_log-quantile.txt | 1 fastcpd-0.14.6/fastcpd/tests/testthat/examples/fastcpd_3.txt | 29 fastcpd-0.14.6/fastcpd/tests/testthat/examples/fastcpd_ar_1.R |only fastcpd-0.14.6/fastcpd/tests/testthat/examples/fastcpd_ar_2.R |only fastcpd-0.14.6/fastcpd/tests/testthat/examples/fastcpd_lm_1.R |only fastcpd-0.14.6/fastcpd/tests/testthat/examples/fastcpd_lm_2.R |only fastcpd-0.14.6/fastcpd/tests/testthat/examples/fastcpd_meanvariance_1.R | 28 fastcpd-0.14.6/fastcpd/tests/testthat/test-examples-fastcpd_3.R | 5 fastcpd-0.14.6/fastcpd/tests/testthat/test-examples-fastcpd_ar_1.R |only fastcpd-0.14.6/fastcpd/tests/testthat/test-examples-fastcpd_ar_2.R |only fastcpd-0.14.6/fastcpd/tests/testthat/test-examples-fastcpd_arima.R | 2 fastcpd-0.14.6/fastcpd/tests/testthat/test-examples-fastcpd_lm_1.R |only fastcpd-0.14.6/fastcpd/tests/testthat/test-examples-fastcpd_lm_2.R |only fastcpd-0.14.6/fastcpd/tests/testthat/test-examples-fastcpd_meanvariance_1.R | 2 fastcpd-0.14.6/fastcpd/tests/testthat/test-experiments.R | 50 fastcpd-0.14.6/fastcpd/tests/testthat/test-vignettes-comparison-pelt.R | 1 fastcpd-0.14.6/fastcpd/vignettes/comparison-packages |only fastcpd-0.14.6/fastcpd/vignettes/comparison-packages.Rmd | 1795 +++++--- 66 files changed, 4251 insertions(+), 2373 deletions(-)
Title: Collocation Inference for Dynamic Systems
Description: These functions implement collocation-inference
for continuous-time and discrete-time stochastic processes.
They provide model-based smoothing, gradient-matching,
generalized profiling and forwards prediction error methods.
Author: Giles Hooker [aut, cre],
Luo Xiao [aut],
James Ramsay [ctb]
Maintainer: Giles Hooker <ghooker@wharton.upenn.edu>
Diff between CollocInfer versions 1.0.4 dated 2016-11-07 and 1.0.5 dated 2024-11-05
CollocInfer-1.0.4/CollocInfer/inst/CITATION |only CollocInfer-1.0.5/CollocInfer/DESCRIPTION | 23 CollocInfer-1.0.5/CollocInfer/MD5 | 77 CollocInfer-1.0.5/CollocInfer/NEWS | 4 CollocInfer-1.0.5/CollocInfer/R/Chemo.R | 96 - CollocInfer-1.0.5/CollocInfer/R/CollocInferPlots.R | 11 CollocInfer-1.0.5/CollocInfer/R/SSElik.R | 476 ++--- CollocInfer-1.0.5/CollocInfer/R/SSEproc.R | 318 +-- CollocInfer-1.0.5/CollocInfer/demo/ChemoEx.R | 590 +++---- CollocInfer-1.0.5/CollocInfer/demo/FhN.diagnostics.r | 514 +++--- CollocInfer-1.0.5/CollocInfer/demo/SEIREX.r | 836 +++++----- CollocInfer-1.0.5/CollocInfer/inst/OldDemo/FhN.diagnostics.R | 292 +-- CollocInfer-1.0.5/CollocInfer/inst/OldDemo/FhNEx.R | 2 CollocInfer-1.0.5/CollocInfer/inst/OldDemo/HenonEx.R | 2 CollocInfer-1.0.5/CollocInfer/man/ChemoData.rd | 2 CollocInfer-1.0.5/CollocInfer/man/ChemoRMData.rd | 2 CollocInfer-1.0.5/CollocInfer/man/CollocInfer-internal.rd | 52 CollocInfer-1.0.5/CollocInfer/man/CollocInferPlots.rd | 4 CollocInfer-1.0.5/CollocInfer/man/FhNdata.rd | 2 CollocInfer-1.0.5/CollocInfer/man/FhNest.rd | 5 CollocInfer-1.0.5/CollocInfer/man/FitMatch.rd | 8 CollocInfer-1.0.5/CollocInfer/man/IntegrateForward.rd | 2 CollocInfer-1.0.5/CollocInfer/man/NSdata.rd | 2 CollocInfer-1.0.5/CollocInfer/man/ParsMatch.rd | 4 CollocInfer-1.0.5/CollocInfer/man/Profile.rd | 12 CollocInfer-1.0.5/CollocInfer/man/ProfileObjective.rd | 8 CollocInfer-1.0.5/CollocInfer/man/SEIRdata.rd | 2 CollocInfer-1.0.5/CollocInfer/man/SplineCoefs.Rd | 6 CollocInfer-1.0.5/CollocInfer/man/forward.prediction.error.rd | 10 CollocInfer-1.0.5/CollocInfer/man/inneropt.rd | 3 CollocInfer-1.0.5/CollocInfer/man/make.findif.rd | 2 CollocInfer-1.0.5/CollocInfer/man/make.lik.rd | 6 CollocInfer-1.0.5/CollocInfer/man/make.logtrans.rd | 3 CollocInfer-1.0.5/CollocInfer/man/make.proc.rd | 4 CollocInfer-1.0.5/CollocInfer/man/make.transform.rd | 11 CollocInfer-1.0.5/CollocInfer/man/make.variance.rd | 2 CollocInfer-1.0.5/CollocInfer/man/outeropt.rd | 3 CollocInfer-1.0.5/CollocInfer/man/profile.covariance.rd | 2 CollocInfer-1.0.5/CollocInfer/man/setup.rd | 12 CollocInfer-1.0.5/CollocInfer/man/smooth.rd | 10 40 files changed, 1712 insertions(+), 1708 deletions(-)
Title: Access, Retrieve, and Work with CMHC Data
Description: Wrapper around the Canadian Mortgage and Housing Corporation (CMHC) web interface. It enables programmatic and reproducible access to a wide variety of housing data from CMHC.
Author: Jens von Bergmann [aut, cre]
Maintainer: Jens von Bergmann <jens@mountainmath.ca>
Diff between cmhc versions 0.2.8 dated 2024-07-12 and 0.2.9 dated 2024-11-05
DESCRIPTION | 15 ++++++++++----- MD5 | 14 +++++++------- NEWS.md | 6 ++++++ R/cmhc.R | 9 +++++++++ README.md | 8 ++++---- build/vignette.rds |binary inst/doc/basic_usage.html | 12 ++++++------ inst/doc/rental_universe.html | 8 ++++---- 8 files changed, 46 insertions(+), 26 deletions(-)
Title: Animated Interactive Grammar of Graphics
Description: Functions are provided for defining animated,
interactive data visualizations in R code, and rendering
on a web page. The 2018 Journal of Computational and
Graphical Statistics paper,
<doi:10.1080/10618600.2018.1513367>
describes the concepts implemented.
Author: Toby Hocking [aut, cre] ,
Biplab Sutradhar [ctb] ,
Hadley Wickham [aut] ,
Winston Chang [aut] ,
RStudio [cph] ,
Nicholas Lewin-Koh [aut] ,
Martin Maechler [aut] ,
Randall Prium [aut] ,
Susan VanderPlas [aut] ,
Carson Sievert [aut] ,
Kevin Ferris [aut [...truncated...]
Maintainer: Toby Hocking <toby.hocking@r-project.org>
Diff between animint2 versions 2024.1.24 dated 2024-01-24 and 2024.11.2 dated 2024-11-05
animint2-2024.1.24/animint2/tests/testthat/pids.txt |only animint2-2024.11.2/animint2/DESCRIPTION | 29 - animint2-2024.11.2/animint2/MD5 | 77 +-- animint2-2024.11.2/animint2/NAMESPACE | 9 animint2-2024.11.2/animint2/NEWS.md | 37 + animint2-2024.11.2/animint2/R/data.R | 2 animint2-2024.11.2/animint2/R/geom-.r | 15 animint2-2024.11.2/animint2/R/guide-colorbar.r | 2 animint2-2024.11.2/animint2/R/plot-build.r | 4 animint2-2024.11.2/animint2/R/stat-unique.r | 3 animint2-2024.11.2/animint2/R/utilities.r | 26 + animint2-2024.11.2/animint2/R/uu_zxx.r | 214 +++++----- animint2-2024.11.2/animint2/R/z_facets.R | 8 animint2-2024.11.2/animint2/R/z_pages.R | 74 ++- animint2-2024.11.2/animint2/R/z_print.R | 21 animint2-2024.11.2/animint2/R/z_scales.R | 20 animint2-2024.11.2/animint2/R/z_theme_animint.R | 52 +- animint2-2024.11.2/animint2/R/z_transformShape.R | 68 +-- animint2-2024.11.2/animint2/build/partial.rdb |binary animint2-2024.11.2/animint2/inst/htmljs/animint.js | 25 - animint2-2024.11.2/animint2/man/animint2pages.Rd | 23 - animint2-2024.11.2/animint2/man/getTextSize.Rd | 38 - animint2-2024.11.2/animint2/man/ggplot_gtable.Rd | 4 animint2-2024.11.2/animint2/man/guide_colourbar.Rd | 2 animint2-2024.11.2/animint2/man/position_dodge.Rd | 2 animint2-2024.11.2/animint2/man/position_identity.Rd | 2 animint2-2024.11.2/animint2/man/position_nudge.Rd | 4 animint2-2024.11.2/animint2/man/position_stack.Rd | 2 animint2-2024.11.2/animint2/man/stat_unique.Rd | 5 animint2-2024.11.2/animint2/man/txhousing.Rd | 2 animint2-2024.11.2/animint2/tests/testthat/helper-functions.R | 54 -- animint2-2024.11.2/animint2/tests/testthat/test-compiler-empty-data.r | 23 - animint2-2024.11.2/animint2/tests/testthat/test-compiler-errors.R | 74 +++ animint2-2024.11.2/animint2/tests/testthat/test-renderer1-axis-angle-rotate.R | 12 animint2-2024.11.2/animint2/tests/testthat/test-renderer1-facet-lines.R | 2 animint2-2024.11.2/animint2/tests/testthat/test-renderer1-global-variables.R | 6 animint2-2024.11.2/animint2/tests/testthat/test-renderer1-knit-print.R | 70 +-- animint2-2024.11.2/animint2/tests/testthat/test-renderer1-url-fragment.R | 3 animint2-2024.11.2/animint2/tests/testthat/test-renderer2-widerect.R | 78 +-- animint2-2024.11.2/animint2/tests/testthat/test-shiny.R | 4 40 files changed, 607 insertions(+), 489 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-09-26 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-04-20 1.2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-09-18 0.3.0
2024-07-13 0.2.0
2023-08-22 0.1.1
2023-05-19 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-05-30 1.0.2
2024-05-21 1.0.1
Title: Marginal Analysis of Misclassified Longitudinal Ordinal Data
Description: Three estimating equation methods are provided in this package for marginal analysis of longitudinal ordinal data with misclassified responses and covariates.
The naive analysis which is solely based on the observed data without adjustment may lead to bias.
The corrected generalized estimating equations (GEE2) method which is unbiased requires the misclassification parameters to be known beforehand.
The corrected generalized estimating equations (GEE2) with validation subsample method estimates the misclassification parameters based on a given
validation set. This package is an implementation
of Chen (2013) <doi:10.1002/bimj.201200195>.
Author: Yuliang Xu [aut, cre],
Zhijian Chen [aut],
Shuo Shuo Liu [aut],
Grace Yi [aut]
Maintainer: Yuliang Xu <yuliangx@umich.edu>
Diff between mgee2 versions 0.5 dated 2023-12-02 and 0.6 dated 2024-11-05
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/mgee2.c | 17 ++++++++++++----- 3 files changed, 17 insertions(+), 10 deletions(-)
Title: Exact Goodness-of-Fit Test for Multinomial Data with Fixed
Probabilities
Description: Tests whether a set of counts fit a given expected ratio. For
example, a genetic cross might be expected to produce four types in the
relative frequencies of 9:3:3:1. To see whether a set of observed counts
fits this expectation, one can examine all possible outcomes with xmulti() or a
random sample of them with xmonte() and find the probability of an observation
deviating from the expectation by at least as much as the observed. As a
measure of deviation from the expected, one can use the log-likelihood
ratio, the multinomial probability, or the classic chi-square statistic. A
histogram of the test statistic can also be plotted and compared with the
asymptotic curve.
Author: Bill Engels [aut, cre]
Maintainer: Bill Engels <wrengels@wisc.edu>
Diff between XNomial versions 1.0.4 dated 2015-12-24 and 1.0.4.1 dated 2024-11-05
DESCRIPTION | 14 - MD5 | 12 build/vignette.rds |binary inst/doc/XNomial.R | 26 +- inst/doc/XNomial.html | 641 ++++++++++++++++++++++++++++++++++++++++++-------- src/XNenumerated.c | 26 +- src/XNmonte.c | 16 - 7 files changed, 596 insertions(+), 139 deletions(-)
Title: R Functions for Chapter 3,4,6,7,9,10,11,12,14,15 of Sample Size
Calculation in Clinical Research
Description: Functions and Examples in Sample Size Calculation in
Clinical Research.
Author: Ed Zhang ; Vicky Qian Wu ; Shein-Chung Chow ; Harry G.Zhang
<ed.zhang.jr@gmail.com>
Maintainer: Vicky Qian Wu <wuqian7@gmail.com>
Diff between TrialSize versions 1.4 dated 2020-07-06 and 1.4.1 dated 2024-11-05
DESCRIPTION | 6 +++--- MD5 | 6 +++--- src/TrialSize.cc | 6 +++--- src/TrialSize_main.cc | 2 +- 4 files changed, 10 insertions(+), 10 deletions(-)
Title: Parallelized Minimum Redundancy, Maximum Relevance (mRMR)
Description: Computes mutual information matrices from continuous, categorical
and survival variables, as well as feature selection with minimum redundancy,
maximum relevance (mRMR) and a new ensemble mRMR technique. Published in
De Jay et al. (2013) <doi:10.1093/bioinformatics/btt383>.
Author: Nicolas De Jay [aut],
Simon Papillon-Cavanagh [aut],
Catharina Olsen [aut],
Gianluca Bontempi [aut],
Bo Li [aut],
Christopher Eeles [ctb],
Benjamin Haibe-Kains [aut, cre]
Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains@utoronto.ca>
Diff between mRMRe versions 2.1.2.1 dated 2023-04-25 and 2.1.2.2 dated 2024-11-05
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- build/vignette.rds |binary data/cgps.rda |binary inst/doc/mRMRe.pdf |binary src/exports.cpp | 28 ++++++++++++++-------------- 6 files changed, 22 insertions(+), 22 deletions(-)
Title: Knowledge Discovery by Accuracy Maximization
Description: An unsupervised and semi-supervised learning algorithm that performs feature extraction
from noisy and high-dimensional data. It facilitates identification of patterns representing underlying
groups on all samples in a data set. Based on Cacciatore S, Tenori L, Luchinat C, Bennett PR, MacIntyre DA.
(2017) Bioinformatics <doi:10.1093/bioinformatics/btw705> and Cacciatore S, Luchinat C, Tenori L. (2014)
Proc Natl Acad Sci USA <doi:10.1073/pnas.1220873111>.
Author: Stefano Cacciatore [aut, trl, cre]
,
Leonardo Tenori [aut]
Maintainer: Stefano Cacciatore <tkcaccia@gmail.com>
Diff between KODAMA versions 2.4 dated 2023-01-12 and 2.4.1 dated 2024-11-05
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- build/vignette.rds |binary data/MetRef.RData |binary data/USA.RData |binary data/clinical.RData |binary data/lymphoma.RData |binary inst/doc/KODAMA.R | 4 ++-- inst/doc/KODAMA.pdf |binary src/ANN.cpp | 4 ++-- 10 files changed, 16 insertions(+), 16 deletions(-)
Title: Fit, Simulate and Diagnose Exponential-Family Models for
Multiple or Multilayer Networks
Description: A set of extensions for the 'ergm' package to fit multilayer/multiplex/multirelational networks and samples of multiple networks. 'ergm.multi' is a part of the Statnet suite of packages for network analysis. See Krivitsky, Koehly, and Marcum (2020) <doi:10.1007/s11336-020-09720-7> and Krivitsky, Coletti, and Hens (2023) <doi:10.1080/01621459.2023.2242627>.
Author: Pavel N. Krivitsky [aut, cre] ,
Mark S. Handcock [ctb],
David R. Hunter [ctb],
Chad Klumb [ctb],
Pietro Coletti [ctb],
Joyce Cheng [ctb]
Maintainer: Pavel N. Krivitsky <pavel@statnet.org>
Diff between ergm.multi versions 0.2.1 dated 2024-02-20 and 0.2.1.1 dated 2024-11-05
ergm.multi-0.2.1.1/ergm.multi/DESCRIPTION | 6 ergm.multi-0.2.1.1/ergm.multi/MD5 | 21 ergm.multi-0.2.1.1/ergm.multi/build/partial.rdb |binary ergm.multi-0.2.1.1/ergm.multi/build/stage23.rdb |binary ergm.multi-0.2.1.1/ergm.multi/build/vignette.rds |binary ergm.multi-0.2.1.1/ergm.multi/data/Goeyvaerts.rda |binary ergm.multi-0.2.1.1/ergm.multi/data/Lazega.rda |binary ergm.multi-0.2.1.1/ergm.multi/inst/doc/Goeyvaerts_reproduction.html | 244 +++++----- ergm.multi-0.2.1.1/ergm.multi/src/changestats_multilayer.c | 8 ergm.multi-0.2.1.1/ergm.multi/src/changestats_multinet.c | 4 ergm.multi-0.2.1.1/ergm.multi/src/wtchangestats_multinet.c | 4 ergm.multi-0.2.1/ergm.multi/build/ergm.multi.pdf |only 12 files changed, 153 insertions(+), 134 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-05-11 0.2.4
2023-07-10 0.2.3
2023-05-30 0.2.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-30 0.6-2
2020-12-10 0.6-1
2020-06-13 0.6-0
2019-11-22 0.5-0
2019-03-04 0.4-4
2018-12-18 0.4-3
2017-05-03 0.4-2
2016-09-20 0.4-1
2016-07-22 0.4-0
2016-06-28 0.3-5
2016-06-06 0.3-4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-12-01 0.4-3
2019-03-04 0.4-2
2018-12-27 0.4-1
2018-12-18 0.4-0
2018-05-07 0.3-16
2018-05-06 0.3-15
2017-02-01 0.3-14
2016-09-20 0.3-12
2016-08-28 0.3-11
2016-06-04 0.3-10
2016-05-30 0.3-9
2014-07-30 0.3-8
2014-05-06 0.3-7
2014-02-17 0.3-6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-05-09 1.5.3
2023-04-11 1.5.1
2023-03-14 1.5.0
2023-01-31 1.4.0
2022-04-19 1.3.0
2021-02-09 1.2.0
2021-01-21 1.1.1
2021-01-06 1.1.0
2019-11-10 1.0.5
2019-10-27 1.0.4
2018-11-08 1.0.3
2018-10-31 1.0.2
2018-06-26 1.0.1
2018-06-15 1.0.0