Wed, 06 Nov 2024

Package RobinCar updated to version 0.3.1 with previous version 0.3.0 dated 2024-05-20

Title: Robust Inference for Covariate Adjustment in Randomized Clinical Trials
Description: Performs robust estimation and inference when using covariate adjustment and/or covariate-adaptive randomization in randomized clinical trials. Ting Ye, Jun Shao, Yanyao Yi, Qinyuan Zhao (2023) <doi:10.1080/01621459.2022.2049278>. Ting Ye, Marlena Bannick, Yanyao Yi, Jun Shao (2023) <doi:10.1080/24754269.2023.2205802>. Ting Ye, Jun Shao, Yanyao Yi (2023) <doi:10.1093/biomet/asad045>. Marlena Bannick, Jun Shao, Jingyi Liu, Yu Du, Yanyao Yi, Ting Ye (2024) <doi:10.48550/arXiv.2306.10213>.
Author: Marlena Bannick [cre, aut] , Ting Ye [aut], Yanyao Yi [aut], Faith Bian [aut]
Maintainer: Marlena Bannick <mnorwood@uw.edu>

Diff between RobinCar versions 0.3.0 dated 2024-05-20 and 0.3.1 dated 2024-11-06

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Package ProbBreed updated to version 1.0.4.3 with previous version 1.0.4.2 dated 2024-08-28

Title: Probability Theory for Selecting Candidates in Plant Breeding
Description: Use probability theory under the Bayesian framework for calculating the risk of selecting candidates in a multi-environment context. Contained are functions used to fit a Bayesian multi-environment model (based on the available presets), extract posterior values and maximum posterior values, compute the variance components, check the model’s convergence, and calculate the probabilities. For both across and within-environments scopes, the package computes the probability of superior performance and the pairwise probability of superior performance. Furthermore, the probability of superior stability and the pairwise probability of superior stability across environments is estimated. A joint probability of superior performance and stability is also provided.
Author: Saulo Chaves [aut, cre] , Kaio Dias [aut, cph] , Matheus Krause [aut]
Maintainer: Saulo Chaves <saulo.chaves@ufv.br>

Diff between ProbBreed versions 1.0.4.2 dated 2024-08-28 and 1.0.4.3 dated 2024-11-06

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Package spmodel updated to version 0.9.0 with previous version 0.8.0 dated 2024-08-27

Title: Spatial Statistical Modeling and Prediction
Description: Fit, summarize, and predict for a variety of spatial statistical models applied to point-referenced and areal (lattice) data. Parameters are estimated using various methods. Additional modeling features include anisotropy, non-spatial random effects, partition factors, big data approaches, and more. Model-fit statistics are used to summarize, visualize, and compare models. Predictions at unobserved locations are readily obtainable. For additional details, see Dumelle et al. (2023) <doi:10.1371/journal.pone.0282524>.
Author: Michael Dumelle [aut, cre] , Matt Higham [aut] , Ryan A. Hill [ctb] , Michael Mahon [ctb] , Jay M. Ver Hoef [aut]
Maintainer: Michael Dumelle <Dumelle.Michael@epa.gov>

Diff between spmodel versions 0.8.0 dated 2024-08-27 and 0.9.0 dated 2024-11-06

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Package litedown updated to version 0.4 with previous version 0.3 dated 2024-10-16

Title: A Lightweight Version of R Markdown
Description: Render R Markdown to Markdown (without using 'knitr'), and Markdown to lightweight HTML or 'LaTeX' documents with the 'commonmark' package (instead of 'Pandoc'). Some missing Markdown features in 'commonmark' are also supported, such as raw HTML or 'LaTeX' blocks, 'LaTeX' math, superscripts, subscripts, footnotes, element attributes, and appendices, but not all 'Pandoc' Markdown features are (or will be) supported. With additional JavaScript and CSS, you can also create HTML slides and articles. This package can be viewed as a trimmed-down version of R Markdown and 'knitr'. It does not aim at rich Markdown features or a large variety of output formats (the primary formats are HTML and 'LaTeX'). Book and website projects of multiple input documents are also supported.
Author: Yihui Xie [aut, cre]
Maintainer: Yihui Xie <xie@yihui.name>

Diff between litedown versions 0.3 dated 2024-10-16 and 0.4 dated 2024-11-06

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Package Xplortext updated to version 1.5.4 with previous version 1.5.3 dated 2023-11-09

Title: Statistical Analysis of Textual Data
Description: Provides a set of functions devoted to multivariate exploratory statistics on textual data. Classical methods such as correspondence analysis and agglomerative hierarchical clustering are available. Chronologically constrained agglomerative hierarchical clustering enriched with labelled-by-words trees is offered. Given a division of the corpus into parts, their characteristic words and documents are identified. Further, accessing to 'FactoMineR' functions is very easy. Two of them are relevant in textual domain. MFA() addresses multiple lexical table allowing applications such as dealing with multilingual corpora as well as simultaneously analyzing both open-ended and closed questions in surveys. See <http://xplortext.unileon.es> for examples.
Author: Ramon Alvarez-Esteban [aut, cre] , Monica Becue-Bertaut [aut] , Josep-Anton Sanchez-Espigares [ctb] , Belchin Adriyanov Kostov [ctb]
Maintainer: Ramon Alvarez-Esteban <ramon.alvarez@unileon.es>

Diff between Xplortext versions 1.5.3 dated 2023-11-09 and 1.5.4 dated 2024-11-06

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New package psidR with initial version 2.3
Package: psidR
Title: Build Panel Data Sets from PSID Raw Data
Version: 2.3
Date: 2024-11-05
Maintainer: Florian Oswald <florian.oswald@gmail.com>
Description: Makes it easy to build panel data in wide format from Panel Survey of Income Dynamics (PSID) delivered raw data. Downloads data directly from the PSID server using the 'SAScii' package. 'psidR' takes care of merging data from each wave onto a cross-period index file, so that individuals can be followed over time. The user must specify which years they are interested in, and the 'PSID' variable names (e.g. ER21003) for each year (they differ in each year). The package offers helper functions to retrieve variable names from different waves. There are different panel data designs and sample subsetting criteria implemented ("SRC", "SEO", "immigrant" and "latino" samples). More information about the PSID can be obtained at <https://simba.isr.umich.edu/data/data.aspx>.
Depends: R (>= 3.5.0)
URL: https://github.com/floswald/psidR
Imports: data.table, RCurl, foreign, SAScii, openxlsx, futile.logger
License: GPL-3
Encoding: UTF-8
Suggests: testthat
NeedsCompilation: no
Packaged: 2024-11-05 13:50:37 UTC; floswald
Author: Florian Oswald [aut, cre]
Repository: CRAN
Date/Publication: 2024-11-06 21:30:02 UTC

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New package afcharts with initial version 0.4.0
Package: afcharts
Title: Produce Charts Following UK Government Analysis Function Guidance
Version: 0.4.0
Description: Colour palettes and a 'ggplot2' theme to follow the UK Government Analysis Function best practice guidance for producing data visualisations, available at <https://analysisfunction.civilservice.gov.uk/policy-store/data-visualisation-charts/>. Includes continuous and discrete colour and fill scales, as well as a 'ggplot2' theme.
License: MIT + file LICENSE
URL: https://github.com/best-practice-and-impact/afcharts, https://best-practice-and-impact.github.io/afcharts/
BugReports: https://github.com/best-practice-and-impact/afcharts/issues
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.5)
Imports: ggplot2, scales, cli, rlang, dplyr
Suggests: ggtext, knitr, rmarkdown, tibble, tidyr, glue, purrr, stringr, testthat (>= 2.1.0), plotly, gt, svglite (>= 2.1.2), ragg (>= 1.2.6), gapminder
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2024-11-05 10:32:59 UTC; OBoxPower
Author: Crown Copyright [cph], Government Analysis Function [fnd], Alice Hannah [aut], Olivia Box Power [cre, ctb]
Maintainer: Olivia Box Power <Olivia.BoxPower@dhsc.gov.uk>
Repository: CRAN
Date/Publication: 2024-11-06 21:10:02 UTC

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New package rbc with initial version 0.1.0
Package: rbc
Title: Regression by Composition
Version: 0.1.0
Description: Flexible statistical modelling using a modular framework for regression, in which groups of transformations are composed together and act on probability distributions.
License: MIT + file LICENSE
Depends: R (>= 2.10)
Imports: Formula, R6
Suggests: testthat (>= 3.0.0)
Encoding: UTF-8
LazyData: true
NeedsCompilation: no
Packaged: 2024-11-05 09:47:34 UTC; daniel
Author: Daniel Farewell [aut, cre, cph] , Simon Schoenbuchner [ctb]
Maintainer: Daniel Farewell <farewelld@cardiff.ac.uk>
Repository: CRAN
Date/Publication: 2024-11-06 21:00:01 UTC

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New package PJFM with initial version 0.1.0
Package: PJFM
Title: Variational Inference for High-Dimensional Joint Frailty Model
Version: 0.1.0
Maintainer: Jiehuan Sun <jiehuan.sun@gmail.com>
Description: Joint frailty models have been widely used to study the associations between recurrent events and a survival outcome. However, existing joint frailty models only consider one or a few recurrent events and cannot deal with high-dimensional recurrent events. This package can be used to fit our recently developed penalized joint frailty model that can handle high-dimensional recurrent events. Specifically, an adaptive lasso penalty is imposed on the parameters for the effects of the recurrent events on the survival outcome, which allows for variable selection. Also, our algorithm is computationally efficient, which is based on the Gaussian variational approximation method.
Depends: R (>= 3.6.0)
Imports: Rcpp (>= 1.0.0), survival(>= 3.2), statmod(>= 1.4), pracma(>= 2.2), Matrix(>= 1.3)
LinkingTo: Rcpp, RcppArmadillo, RcppEnsmallen
Suggests: splines
License: GPL-2
Encoding: UTF-8
LazyData: true
NeedsCompilation: yes
Packaged: 2024-11-05 05:24:37 UTC; JiehuanSun
Author: Jiehuan Sun [aut, cre]
Repository: CRAN
Date/Publication: 2024-11-06 21:00:06 UTC

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Package pcvr updated to version 1.1.1.0 with previous version 1.0.0 dated 2024-09-05

Title: Plant Phenotyping and Bayesian Statistics
Description: Analyse common types of plant phenotyping data, provide a simplified interface to longitudinal growth modeling and select Bayesian statistics, and streamline use of 'PlantCV' output. Several Bayesian methods and reporting guidelines for Bayesian methods are described in Kruschke (2018) <doi:10.1177/2515245918771304>, Kruschke (2013) <doi:10.1037/a0029146>, and Kruschke (2021) <doi:10.1038/s41562-021-01177-7>.
Author: Josh Sumner [aut, cre] , Jeffrey Berry [aut] , Noah Fahlgren [rev] , Donald Danforth Plant Science Center [cph]
Maintainer: Josh Sumner <jsumner@danforthcenter.org>

Diff between pcvr versions 1.0.0 dated 2024-09-05 and 1.1.1.0 dated 2024-11-06

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Package libr updated to version 1.3.7 with previous version 1.3.4 dated 2024-07-19

Title: Libraries, Data Dictionaries, and a Data Step for R
Description: Contains a set of functions to create data libraries, generate data dictionaries, and simulate a data step. The libname() function will load a directory of data into a library in one line of code. The dictionary() function will generate data dictionaries for individual data frames or an entire library. And the datestep() function will perform row-by-row data processing.
Author: David Bosak [aut, cre], Brian Varney [ctb], Archytas Clinical Solutions [cph]
Maintainer: David Bosak <dbosak01@gmail.com>

Diff between libr versions 1.3.4 dated 2024-07-19 and 1.3.7 dated 2024-11-06

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Package REDCapExporter updated to version 0.3.1 with previous version 0.3.0 dated 2024-09-20

Title: Automated Construction of R Data Packages from REDCap Projects
Description: Export all data, including metadata, from a REDCap (Research Electronic Data Capture) Project via the REDCap API <https://projectredcap.org/wp-content/resources/REDCapTechnicalOverview.pdf>. The exported (meta)data will be processed and formatted into a stand alone R data package which can be installed and shared between researchers. Several default reports are generated as vignettes in the resulting package.
Author: Peter DeWitt [aut, cre]
Maintainer: Peter DeWitt <peter.dewitt@cuanschutz.edu>

Diff between REDCapExporter versions 0.3.0 dated 2024-09-20 and 0.3.1 dated 2024-11-06

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Package envi updated to version 1.0.0 with previous version 0.1.19 dated 2024-01-23

Title: Environmental Interpolation using Spatial Kernel Density Estimation
Description: Estimates an ecological niche using occurrence data, covariates, and kernel density-based estimation methods. For a single species with presence and absence data, the 'envi' package uses the spatial relative risk function that is estimated using the 'sparr' package. Details about the 'sparr' package methods can be found in the tutorial: Davies et al. (2018) <doi:10.1002/sim.7577>. Details about kernel density estimation can be found in J. F. Bithell (1990) <doi:10.1002/sim.4780090616>. More information about relative risk functions using kernel density estimation can be found in J. F. Bithell (1991) <doi:10.1002/sim.4780101112>.
Author: Ian D. Buller [aut, cre, cph] , Lance A. Waller [ctb, ths] , Emory University [cph]
Maintainer: Ian D. Buller <ian.buller@alumni.emory.edu>

Diff between envi versions 0.1.19 dated 2024-01-23 and 1.0.0 dated 2024-11-06

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Package WeibullR.plotly updated to version 0.3 with previous version 0.2.1 dated 2024-07-08

Title: Interactive Weibull Probability Plots
Description: Build interactive Weibull Probability Plots with 'WeibullR' by David Silkworth and Jurgen Symynck (2022) <https://CRAN.R-project.org/package=WeibullR>, an R package for Weibull analysis, and 'plotly' by Carson Sievert (2020) <https://plotly-r.com>, an interactive web-based graphing library.
Author: Paul Govan [aut, cre, cph]
Maintainer: Paul Govan <paul.govan2@gmail.com>

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Package sts updated to version 1.1 with previous version 1.0 dated 2024-09-17

Title: Estimation of the Structural Topic and Sentiment-Discourse Model for Text Analysis
Description: The Structural Topic and Sentiment-Discourse (STS) model allows researchers to estimate topic models with document-level metadata that determines both topic prevalence and sentiment-discourse. The sentiment-discourse is modeled as a document-level latent variable for each topic that modulates the word frequency within a topic. These latent topic sentiment-discourse variables are controlled by the document-level metadata. The STS model can be useful for regression analysis with text data in addition to topic modeling’s traditional use of descriptive analysis. The method was developed in Chen and Mankad (2024) <doi:10.1287/mnsc.2022.00261>.
Author: Shawn Mankad [aut, cre], Li Chen [aut]
Maintainer: Shawn Mankad <smankad@ncsu.edu>

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Package rush updated to version 0.1.2 with previous version 0.1.1 dated 2024-07-05

Title: Rapid Parallel and Distributed Computing
Description: Parallel computing with a network of local and remote workers. Fast exchange of results between the workers through a 'Redis' database. Key features include task queues, local caching, and sophisticated error handling.
Author: Marc Becker [cre, aut, cph]
Maintainer: Marc Becker <marcbecker@posteo.de>

Diff between rush versions 0.1.1 dated 2024-07-05 and 0.1.2 dated 2024-11-06

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New package ratlas with initial version 0.1.0
Package: ratlas
Title: ATLAS Formatting Functions and Templates
Version: 0.1.0
Description: Provides templates, formatting tools, and 'ggplot2' themes tailored for the Accessible Teaching, Learning, and Assessment Systems (ATLAS) organization. These templates facilitate the creation of topic guides and technical reports, while the formatting functions enable users to customize numbers and tables to meet specific requirements. Additionally, the themes ensure a uniform visual style across graphics.
License: GPL-3
VignetteBuilder: knitr
URL: https://ratlas.netlify.app, https://github.com/atlas-aai/ratlas
BugReports: https://github.com/atlas-aai/ratlas/issues
Depends: R (>= 3.5.0)
Imports: bookdown (>= 0.9), colorspace (>= 1.4.1), dplyr (>= 0.8.1), extrafont (>= 0.17), fs (>= 1.2.7), ggplot2 (>= 3.3.2), ggtext (>= 0.1.1), glue (>= 1.3.1), grDevices, hrbrthemes (>= 0.6.0), knitr (>= 1.22), magrittr (>= 1.5), officedown (>= 0.2.2), purrr (>= 0.3.4), rlang (>= 0.3.4), scales (>= 1.0.0), stringr (>= 1.4.0), tibble (>= 2.1.3), tidyr (>= 0.8.3), xaringan (>= 0.11), xfun (>= 0.12)
Suggests: covr (>= 3.2.1), cowplot (>= 1.0.0), dichromat (>= 2.0.0), english (>= 1.2.3), here (>= 0.1), kableExtra (>= 1.1.0), lintr (>= 1.0.3), magick (>= 2.2), pkgdown (>= 2.0.7), rmarkdown (>= 1.12), spelling (>= 2.1), testthat (>= 2.1.0), tinytex (>= 0.13), usethis (>= 1.6.0), vdiffr (>= 0.3.1), viridis (>= 0.5.1), withr (>= 2.2.0)
Encoding: UTF-8
LazyData: true
Language: en-US
NeedsCompilation: no
Packaged: 2024-11-04 20:42:06 UTC; n013p475
Author: W. Jake Thompson [aut, cre] , Noelle Pablo [aut], Jeffrey Hoover [aut] , University of Kansas [cph, fnd]
Maintainer: W. Jake Thompson <wjakethompson@gmail.com>
Repository: CRAN
Date/Publication: 2024-11-06 16:20:02 UTC

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Package priorCON updated to version 0.1.2 with previous version 0.1.1 dated 2024-09-07

Title: Graph Community Detection Methods into Systematic Conservation Planning
Description: An innovative tool-set that incorporates graph community detection methods into systematic conservation planning. It is designed to enhance spatial prioritization by focusing on the protection of areas with high ecological connectivity. Unlike traditional approaches that prioritize individual planning units, 'priorCON' focuses on clusters of features that exhibit strong ecological linkages. The 'priorCON' package is built upon the 'prioritizr' package <doi:10.32614/CRAN.package.prioritizr>, using commercial and open-source exact algorithm solvers that ensure optimal solutions to prioritization problems.
Author: Christos Adam [aut, cre], Aggeliki Doxa [aut] , Nikolaos Nagkoulis [aut]
Maintainer: Christos Adam <econp266@econ.soc.uoc.gr>

Diff between priorCON versions 0.1.1 dated 2024-09-07 and 0.1.2 dated 2024-11-06

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Package prior3D updated to version 0.1.2 with previous version 0.1.1 dated 2024-09-26

Title: 3D Prioritization Algorithm
Description: Three-dimensional systematic conservation planning, conducting nested prioritization analyses across multiple depth levels and ensuring efficient resource allocation throughout the water column. It provides a structured workflow designed to address biodiversity conservation and management challenges in the 3 dimensions, while facilitating users’ choices and parameterization (Doxa et al. 2024 <doi:10.1016/j.ecolmodel.2024.110919>).
Author: Aggeliki Doxa [aut] , Christos Adam [aut, cre], Nikolaos Nagkoulis [aut] , D. Antonios Mazaris [aut] , Stelios Katsanevakis [aut]
Maintainer: Christos Adam <econp266@econ.soc.uoc.gr>

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Package lfe updated to version 3.1.0 with previous version 3.0-0 dated 2024-02-29

Title: Linear Group Fixed Effects
Description: Transforms away factors with many levels prior to doing an OLS. Useful for estimating linear models with multiple group fixed effects, and for estimating linear models which uses factors with many levels as pure control variables. See Gaure (2013) <doi:10.1016/j.csda.2013.03.024> Includes support for instrumental variables, conditional F statistics for weak instruments, robust and multi-way clustered standard errors, as well as limited mobility bias correction (Gaure 2014 <doi:10.1002/sta4.68>). Since version 3.0, it provides dedicated functions to estimate Poisson models.
Author: Simen Gaure [aut] , Grant McDermott [ctb], Mauricio Vargas Sepulveda [ctb, cre] , Karl Dunkle Werner [ctb], Matthieu Stigler [ctb] , Daniel Luedecke [ctb]
Maintainer: Mauricio Vargas Sepulveda <m.sepulveda@mail.utoronto.ca>

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New package iucnr with initial version 0.0.0.1
Package: iucnr
Title: IUCN Red List Data
Version: 0.0.0.1
Description: Facilitates access to the International Union for Conservation of Nature (IUCN) Red List of Threatened Species, a comprehensive global inventory of species at risk of extinction. This package streamlines the process of determining conservation status by matching species names with Red List data, providing tools to easily query and retrieve conservation statuses. Designed to support biodiversity research and conservation planning, this package relies on data from the 'iucnrdata' package, available on GitHub <https://github.com/PaulESantos/iucnrdata>. To install the data package, use pak::pak('PaulESantos/iucnrdata').
License: MIT + file LICENSE
Encoding: UTF-8
URL: https://github.com/PaulESantos/iucnr, https://paulesantos.github.io/iucnr/
BugReports: https://github.com/PaulESantos/iucnr/issues
Depends: R (>= 2.10)
Imports: cli, dplyr, stringr
Suggests: rlang, testthat (>= 3.0.0), iucnrdata
NeedsCompilation: no
Packaged: 2024-11-04 17:03:06 UTC; PC
Author: Paul Efren Santos Andrade [aut, cre]
Maintainer: Paul Efren Santos Andrade <paulefrens@gmail.com>
Repository: CRAN
Date/Publication: 2024-11-06 16:10:05 UTC

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New package divent with initial version 0.4-4
Package: divent
Title: Entropy Partitioning to Measure Diversity
Version: 0.4-4
Description: Measurement and partitioning of diversity, based on Tsallis entropy, following Marcon and Herault (2015) <doi:10.18637/jss.v067.i08>. 'divent' provides functions to estimate alpha, beta and gamma diversity of communities, including phylogenetic and functional diversity.
URL: https://ericmarcon.github.io/divent/, https://github.com/EricMarcon/divent
BugReports: https://github.com/EricMarcon/divent/issues
License: GNU General Public License
Depends: R (>= 3.5)
Imports: ape, cli, dplyr, ggplot2, graphics, EntropyEstimation, RColorBrewer, Rdpack, rlang, stats, tibble, tidyr, vegan
Suggests: ade4, knitr, pkgdown, rmarkdown, SPECIES, testthat (>= 3.0.0)
Encoding: UTF-8
LazyData: true
VignetteBuilder: knitr
SystemRequirements: pandoc
NeedsCompilation: no
Packaged: 2024-11-04 16:41:15 UTC; emarc
Author: Eric Marcon [aut, cre]
Maintainer: Eric Marcon <eric.marcon@agroparistech.fr>
Repository: CRAN
Date/Publication: 2024-11-06 16:10:08 UTC

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New package rtiktoken with initial version 0.0.6
Package: rtiktoken
Title: A Byte-Pair-Encoding (BPE) Tokenizer for OpenAI's Large Language Models
Version: 0.0.6
Description: A thin wrapper around the tiktoken-rs crate, allowing to encode text into Byte-Pair-Encoding (BPE) tokens and decode tokens back to text. This is useful to understand how Large Language Models (LLMs) perceive text.
License: MIT + file LICENSE
URL: https://davzim.github.io/rtiktoken/, https://github.com/DavZim/rtiktoken/
BugReports: https://github.com/DavZim/rtiktoken/issues
Suggests: testthat (>= 3.0.0)
SystemRequirements: Cargo (Rust's package manager), rustc >= 1.65.0
Encoding: UTF-8
NeedsCompilation: yes
Packaged: 2024-11-04 12:18:08 UTC; dazimme
Author: David Zimmermann-Kollenda [aut, cre], Roger Zurawicki [aut] , Authors of the dependent Rust crates [aut]
Maintainer: David Zimmermann-Kollenda <david_j_zimmermann@hotmail.com>
Repository: CRAN
Date/Publication: 2024-11-06 15:40:02 UTC

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Package Rpolyhedra updated to version 0.5.6 with previous version 0.5.5 dated 2024-10-30

Title: Polyhedra Database
Description: A polyhedra database scraped from various sources as R6 objects and 'rgl' visualizing capabilities.
Author: Alejandro Baranek [aut, com, cre, cph], Leonardo Belen [aut, com, cph], qbotics [cph], Barret Schloerke [rev], Lijia Yu [rev]
Maintainer: Alejandro Baranek <abaranek@dc.uba.ar>

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New package OasisR with initial version 3.1.1
Package: OasisR
Version: 3.1.1
Date: 2024-11-04
Title: Outright Tool for the Analysis of Spatial Inequalities and Segregation
Description: A comprehensive set of indexes and tests for social segregation analysis, as described in Tivadar (2019) - 'OasisR': An R Package to Bring Some Order to the World of Segregation Measurement <doi:10.18637/jss.v089.i07>. The package is the most complete existing tool and it clarifies many ambiguities and errors regarding the definition of segregation indices. Additionally, 'OasisR' introduces several resampling methods that enable testing their statistical significance (randomization tests, bootstrapping, and jackknife methods).
Depends: R (>= 4.4.0)
Imports: spdep (>= 1.3-6), measurements (>= 1.5.1), sf (>= 1.0-18), outliers (>= 0.15), methods (>= 4.4.0)
License: GPL-2 | GPL-3
LazyData: true
Suggests: testthat (>= 3.2.1.1)
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2024-11-04 09:10:46 UTC; mtivadar
Author: Mihai Tivadar [aut, cre]
Maintainer: Mihai Tivadar <mihai.tivadar@inrae.fr>
Repository: CRAN
Date/Publication: 2024-11-06 15:30:05 UTC

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New package ntfy with initial version 0.0.6
Package: ntfy
Title: Lightweight Wrapper to the 'ntfy.sh' Service
Version: 0.0.6
Maintainer: Jonathan Carroll <rpkg@jcarroll.com.au>
Description: The 'ntfy' (pronounce: notify) service is a simple HTTP-based pub-sub notification service. It allows you to send notifications to your phone or desktop via scripts from any computer, entirely without signup, cost or setup. It's also open source if you want to run your own. Visit <https://ntfy.sh> for more details.
License: MIT + file LICENSE
Encoding: UTF-8
Imports: httr2, jsonlite
URL: https://github.com/jonocarroll/ntfy
BugReports: https://github.com/jonocarroll/ntfy/issues
Depends: R (>= 4.1)
LazyData: true
Suggests: ggplot2, testthat (>= 3.0.0)
NeedsCompilation: no
Packaged: 2024-11-04 08:40:18 UTC; jono
Author: Jonathan Carroll [aut, cre] , Andrew Heiss [ctb]
Repository: CRAN
Date/Publication: 2024-11-06 15:20:02 UTC

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Package migraph updated to version 1.4.3 with previous version 1.4.2 dated 2024-09-04

Title: Univariate and Multivariate Tests for Multimodal and Other Networks
Description: A set of tools for testing networks. It includes functions for univariate and multivariate conditional uniform graph and quadratic assignment procedure testing, and network regression. The package is a complement to 'Multimodal Political Networks' (2021, ISBN:9781108985000), and includes various datasets used in the book. Built on the 'manynet' package, all functions operate with matrices, edge lists, and 'igraph', 'network', and 'tidygraph' objects, and on one-mode and two-mode (bipartite) networks.
Author: James Hollway [cre, aut, ctb] , Henrique Sposito [ctb] , Jael Tan [ctb] , Bernhard Bieri [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>

Diff between migraph versions 1.4.2 dated 2024-09-04 and 1.4.3 dated 2024-11-06

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New package heterocop with initial version 0.1.0.0
Package: heterocop
Title: Semi-Parametric Estimation with Gaussian Copula
Version: 0.1.0.0
Description: A method for generating random vectors which are linked by a Gaussian copula. It also enables to estimate the correlation matrix of the Gaussian copula in order to identify independencies within the data.
Imports: mvtnorm, stats, igraph, matrixcalc, graphics, foreach, stringr, doSNOW, utils
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
Depends: R (>= 2.10)
Suggests: knitr, rmarkdown, kableExtra, dplyr
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2024-11-04 10:27:53 UTC; etomilina
Author: Julie Cartier [aut], Florence Jaffrezic [aut], Gildas Mazo [aut], Ekaterina Tomilina [aut, cre]
Maintainer: Ekaterina Tomilina <ekaterina.tomilina@inrae.fr>
Repository: CRAN
Date/Publication: 2024-11-06 15:30:02 UTC

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New package gpcp with initial version 0.1.0
Package: gpcp
Title: Genomic Prediction of Cross Performance
Version: 0.1.0
Maintainer: Christine Nyaga <cmn92@cornell.edu>
Description: This function performs genomic prediction of cross performance using genotype and phenotype data. It processes data in several steps including loading necessary software, converting genotype data, processing phenotype data, fitting mixed models, and predicting cross performance based on weighted marker effects. For more information, see Labroo et al. (2023) <doi:10.1007/s00122-023-04377-z>.
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
LinkingTo: Rcpp, RcppArmadillo
Imports: BiocManager, Rcpp, dplyr, sommer, AGHmatrix, snpStats, VariantAnnotation, tools, magrittr, methods
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
Depends: R (>= 2.10)
NeedsCompilation: yes
Packaged: 2024-11-04 13:31:44 UTC; cmn92
Author: Marlee Labroo [aut], Christine Nyaga [cre, aut], Lukas Mueller [aut]
Repository: CRAN
Date/Publication: 2024-11-06 15:50:02 UTC

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New package exams2forms with initial version 0.1-0
Package: exams2forms
Version: 0.1-0
Date: 2024-11-04
Title: Embedding 'exams' Exercises as Forms in 'rmarkdown' or 'quarto' Documents
Description: Automatic generation of quizzes or individual questions as (interactive) forms within 'rmarkdown' or 'quarto' documents based on 'R/exams' exercises.
Depends: R (>= 4.0.0), exams (>= 2.4-0)
Imports: grDevices, tools, utils, knitr, rmarkdown
Suggests: xfun
License: GPL-3
URL: https://www.R-exams.org/
BugReports: https://www.R-exams.org/contact/
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2024-11-04 07:22:42 UTC; zeileis
Author: Achim Zeileis [aut, cre] , Reto Stauffer [aut] , Dale Barr [ctb] , Lisa DeBruine [ctb] , Florian Stampfer [ctb] , Jonas Tscholl [ctb]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Repository: CRAN
Date/Publication: 2024-11-06 15:20:05 UTC

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Package cansim updated to version 0.3.17 with previous version 0.3.16 dated 2024-03-12

Title: Accessing Statistics Canada Data Table and Vectors
Description: Searches for, accesses, and retrieves new-format and old-format Statistics Canada data tables, as well as individual vectors, as tidy data frames. This package deals with encoding issues, allows for bilingual English or French language data retrieval, and bundles convenience functions to make it easier to work with retrieved table data. Optional caching features are provided.
Author: Jens von Bergmann [cre], Dmitry Shkolnik [aut]
Maintainer: Jens von Bergmann <jens@mountainmath.ca>

Diff between cansim versions 0.3.16 dated 2024-03-12 and 0.3.17 dated 2024-11-06

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New package ABRSQOL with initial version 1.0.0
Package: ABRSQOL
Title: Quality-of-Life Solver for "Measuring Quality of Life under Spatial Frictions"
Version: 1.0.0
Description: This toolkit implements a numerical solution algorithm to invert a quality of life measure from observed data. Unlike the traditional Rosen-Roback measure, this measure accounts for mobility frictions—generated by idiosyncratic tastes and local ties — and trade frictions — generated by trade costs and non-tradable services, thereby reducing non-classical measurement error. The QoL measure is based on Ahlfeldt, Bald, Roth, Seidel (2024) <https://econpapers.repec.org/RePEc:boc:bocode:s459382> "Measuring Quality of Life under Spatial Frictions". When using this programme or the toolkit in your work, please cite the paper.
URL: https://github.com/Ahlfeldt/ABRSQOL-toolkit#readme
BugReports: https://github.com/Ahlfeldt/ABRSQOL-toolkit/issues
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.5.0)
Suggests: testthat (>= 3.0.0)
NeedsCompilation: no
Packaged: 2024-11-04 14:39:54 UTC; BSE
Author: Gabriel M Ahlfeldt [cph, aut] , Fabian Bald [aut] , Duncan Roth [aut] , Tobias Seidel [aut] , Max von Mylius [trl, cre]
Maintainer: Max von Mylius <max.mylius@hu-berlin.de>
Repository: CRAN
Date/Publication: 2024-11-06 16:00:02 UTC

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Package mlr3data updated to version 0.8.0 with previous version 0.7.0 dated 2023-06-29

Title: Collection of Machine Learning Data Sets for 'mlr3'
Description: A small collection of interesting and educational machine learning data sets which are used as examples in the 'mlr3' book (<https://mlr3book.mlr-org.com>), the use case gallery (<https://mlr3gallery.mlr-org.com>), or in other examples. All data sets are properly preprocessed and ready to be analyzed by most machine learning algorithms. Data sets are automatically added to the dictionary of tasks if 'mlr3' is loaded.
Author: Michel Lang [ctb] , Marc Becker [cre, aut]
Maintainer: Marc Becker <marcbecker@posteo.de>

Diff between mlr3data versions 0.7.0 dated 2023-06-29 and 0.8.0 dated 2024-11-06

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Package ergm updated to version 4.7.5 with previous version 4.7.1 dated 2024-10-07

Title: Fit, Simulate and Diagnose Exponential-Family Models for Networks
Description: An integrated set of tools to analyze and simulate networks based on exponential-family random graph models (ERGMs). 'ergm' is a part of the Statnet suite of packages for network analysis. See Hunter, Handcock, Butts, Goodreau, and Morris (2008) <doi:10.18637/jss.v024.i03> and Krivitsky, Hunter, Morris, and Klumb (2023) <doi:10.18637/jss.v105.i06>.
Author: Mark S. Handcock [aut], David R. Hunter [aut], Carter T. Butts [aut], Steven M. Goodreau [aut], Pavel N. Krivitsky [aut, cre] , Martina Morris [aut], Li Wang [ctb], Kirk Li [ctb], Skye Bender-deMoll [ctb], Chad Klumb [ctb], Michal Bojanowski [ctb] , [...truncated...]
Maintainer: Pavel N. Krivitsky <pavel@statnet.org>

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New package aods3 with initial version 0.5
Package: aods3
Version: 0.5
Title: Analysis of Overdispersed Data using S3 Methods
Depends: R (>= 3.0.0), stats
Suggests: boot, lme4
Description: Provides functions to analyse overdispersed counts or proportions. These functions should be considered as complements to more sophisticated methods such as generalized estimating equations (GEE) or generalized linear mixed effect models (GLMM). aods3 is an S3 re-implementation of the deprecated S4 package aod.
License: GPL (>= 2)
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2024-11-04 16:10:48 UTC; siberchicot
Author: Matthieu Lesnoff [aut], Renaud Lancelot [aut], Aurelie Siberchicot [ctb, cre]
Maintainer: Aurelie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
Repository: CRAN
Date/Publication: 2024-11-06 15:00:02 UTC

More information about aods3 at CRAN
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Package multiplex updated to version 3.8-3 with previous version 3.7 dated 2024-09-30

Title: Algebraic Tools for the Analysis of Multiple Social Networks
Description: Algebraic procedures for analyses of multiple social networks are delivered with this package as described in Ostoic (2020) <DOI:10.18637/jss.v092.i11>. 'multiplex' makes possible, among other things, to create and manipulate multiplex, multimode, and multilevel network data with different formats. Effective ways are available to treat multiple networks with routines that combine algebraic systems like the partially ordered semigroup with decomposition procedures or semiring structures with the relational bundles occurring in different types of multivariate networks. 'multiplex' provides also an algebraic approach for affiliation networks through Galois derivations between families of the pairs of subsets in the two domains of the network with visualization options.
Author: Antonio Rivero Ostoic [aut, cre]
Maintainer: Antonio Rivero Ostoic <multiplex@post.com>

Diff between multiplex versions 3.7 dated 2024-09-30 and 3.8-3 dated 2024-11-06

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Package staccuracy updated to version 0.2.0 with previous version 0.1.0 dated 2024-10-03

Title: Standardized Accuracy and Other Model Performance Metrics
Description: Standardized accuracy (staccuracy) is framework for expressing accuracy scores such that 50% represents a reference level of performance and 100% is a perfect prediction. The 'staccuracy' package provides tools for creating staccuracy functions as well as some recommended staccuracy measures. It also provides functions for some classic performance metrics such as mean absolute error (MAE), root mean squared error (RMSE), and area under the receiver operating characteristic curve (AUCROC), as well as their winsorized versions when applicable.
Author: Chitu Okoli [aut, cre]
Maintainer: Chitu Okoli <Chitu.Okoli@skema.edu>

Diff between staccuracy versions 0.1.0 dated 2024-10-03 and 0.2.0 dated 2024-11-06

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Package pbcc updated to version 0.0.7 with previous version 0.0.5 dated 2024-06-05

Title: Percentile-Based Control Chart
Description: Design and implementation of Percentile-based Shewhart Control Charts for continuous data. Faraz (2019) <doi:10.1002/qre.2384>.
Author: Khan Zahid [aut], Aamir Saghir [aut], Zsolt T. Kosztyan [aut, cre]
Maintainer: Zsolt T. Kosztyan <kosztyan.zsolt@gtk.uni-pannon.hu>

Diff between pbcc versions 0.0.5 dated 2024-06-05 and 0.0.7 dated 2024-11-06

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Package olsrr updated to version 0.6.1 with previous version 0.6.0 dated 2024-02-12

Title: Tools for Building OLS Regression Models
Description: Tools designed to make it easier for users, particularly beginner/intermediate R users to build ordinary least squares regression models. Includes comprehensive regression output, heteroskedasticity tests, collinearity diagnostics, residual diagnostics, measures of influence, model fit assessment and variable selection procedures.
Author: Aravind Hebbali [aut, cre]
Maintainer: Aravind Hebbali <hebbali.aravind@gmail.com>

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Package rasterdiv updated to version 0.3.6 with previous version 0.3.5 dated 2024-10-14

Title: Diversity Indices for Numerical Matrices
Description: Provides methods to calculate diversity indices on numerical matrices based on information theory, as described in Rocchini, Marcantonio and Ricotta (2017) <doi:10.1016/j.ecolind.2016.07.039>, and Rocchini et al. (2021) <doi:10.1101/2021.01.23.427872>.
Author: Matteo Marcantonio [aut, cre], Martina Iannacito [aut, ctb], Elisa Marchetto [ctb], Elisa Thouverai [aut, ctb], Michele Torresani [aut, ctb], Daniele Da Re [aut], Clara Tattoni [aut], Giovanni Bacaro [aut], Saverio Vicario [aut, ctb], Carlo Ricotta [ [...truncated...]
Maintainer: Matteo Marcantonio <marcantoniomatteo@gmail.com>

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Package pliman updated to version 3.0.0 with previous version 2.1.0 dated 2023-10-14

Title: Tools for Plant Image Analysis
Description: Tools for both single and batch image manipulation and analysis (Olivoto, 2022 <doi:10.1111/2041-210X.13803>) and phytopathometry (Olivoto et al., 2022 <doi:10.1007/S40858-021-00487-5>). The tools can be used for the quantification of leaf area, object counting, extraction of image indexes, shape measurement, object landmark identification, and Elliptical Fourier Analysis of object outlines (Claude (2008) <doi:10.1007/978-0-387-77789-4>). The package also provides a comprehensive pipeline for generating shapefiles with complex layouts and supports high-throughput phenotyping of RGB, multispectral, and hyperspectral orthomosaics. This functionality facilitates field phenotyping using UAV- or satellite-based imagery.
Author: Tiago Olivoto [aut, cre]
Maintainer: Tiago Olivoto <tiagoolivoto@gmail.com>

Diff between pliman versions 2.1.0 dated 2023-10-14 and 3.0.0 dated 2024-11-06

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 pliman-3.0.0/pliman/R/utils_file.R                     |   20 
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 pliman-3.0.0/pliman/R/utils_mosaic.R                   | 4389 ++++++++-
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 178 files changed, 27240 insertions(+), 22349 deletions(-)

More information about pliman at CRAN
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Package fmesher updated to version 0.2.0 with previous version 0.1.7 dated 2024-07-01

Title: Triangle Meshes and Related Geometry Tools
Description: Generate planar and spherical triangle meshes, compute finite element calculations for 1- and 2-dimensional flat and curved manifolds with associated basis function spaces, methods for lines and polygons, and transparent handling of coordinate reference systems and coordinate transformation, including 'sf' and 'sp' geometries. The core 'fmesher' library code was originally part of the 'INLA' package, and implements parts of "Triangulations and Applications" by Hjelle and Daehlen (2006) <doi:10.1007/3-540-33261-8>.
Author: Finn Lindgren [aut, cre, cph] , Seaton Andy [ctb] , Suen Man Ho [ctb] , Fabian E. Bachl [ctb]
Maintainer: Finn Lindgren <finn.lindgren@gmail.com>

Diff between fmesher versions 0.1.7 dated 2024-07-01 and 0.2.0 dated 2024-11-06

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 fmesher-0.2.0/fmesher/NEWS.md                           |   41 
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 fmesher-0.2.0/fmesher/man/fmesher-deprecated.Rd         |   45 
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 fmesher-0.2.0/fmesher/man/wkt_tree.Rd                   |    3 
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 fmesher-0.2.0/fmesher/src/RcppFmesher.h                 |    8 
 fmesher-0.2.0/fmesher/src/Rcpp_interface.cc             |   62 -
 fmesher-0.2.0/fmesher/src/basis.cc                      |    8 
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 fmesher-0.2.0/fmesher/src/vector_t.h                    |    8 
 fmesher-0.2.0/fmesher/tests/testthat/setup.R            |    9 
 fmesher-0.2.0/fmesher/tests/testthat/test-cprod.R       |    5 
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Package salesforcer updated to version 1.0.2 with previous version 1.0.1 dated 2022-03-01

Title: An Implementation of 'Salesforce' APIs Using Tidy Principles
Description: Functions connecting to the 'Salesforce' Platform APIs (REST, SOAP, Bulk 1.0, Bulk 2.0, Metadata, Reports and Dashboards) <https://trailhead.salesforce.com/content/learn/modules/api_basics/api_basics_overview>. "API" is an acronym for "application programming interface". Most all calls from these APIs are supported as they use CSV, XML or JSON data that can be parsed into R data structures. For more details please see the 'Salesforce' API documentation and this package's website <https://stevenmmortimer.github.io/salesforcer/> for more information, documentation, and examples.
Author: Steven M. Mortimer [aut, cre], Takekatsu Hiramura [ctb], Jennifer Bryan [ctb, cph], Joanna Zhao [ctb, cph]
Maintainer: Steven M. Mortimer <mortimer.steven.m@gmail.com>

Diff between salesforcer versions 1.0.1 dated 2022-03-01 and 1.0.2 dated 2024-11-06

 salesforcer-1.0.1/salesforcer/tests/testthat/salesforcer_test_settings.rds                             |only
 salesforcer-1.0.2/salesforcer/DESCRIPTION                                                              |   15 
 salesforcer-1.0.2/salesforcer/MD5                                                                      |  181 
 salesforcer-1.0.2/salesforcer/NEWS.md                                                                  |   30 
 salesforcer-1.0.2/salesforcer/R/analytics-report.R                                                     |    2 
 salesforcer-1.0.2/salesforcer/R/attachments.R                                                          |  366 -
 salesforcer-1.0.2/salesforcer/R/auth.R                                                                 |   22 
 salesforcer-1.0.2/salesforcer/R/bulk-operation.R                                                       |  656 +-
 salesforcer-1.0.2/salesforcer/R/bulk-query.R                                                           |   63 
 salesforcer-1.0.2/salesforcer/R/describe-metadata.R                                                    |    3 
 salesforcer-1.0.2/salesforcer/R/retrieve-metadata.R                                                    |    3 
 salesforcer-1.0.2/salesforcer/R/utils-control.R                                                        |  364 -
 salesforcer-1.0.2/salesforcer/R/utils-httr.R                                                           |    2 
 salesforcer-1.0.2/salesforcer/R/utils-metadata.R                                                       | 3076 +++++-----
 salesforcer-1.0.2/salesforcer/R/utils-query.R                                                          |   13 
 salesforcer-1.0.2/salesforcer/R/zzz.R                                                                  |   12 
 salesforcer-1.0.2/salesforcer/README.md                                                                |    8 
 salesforcer-1.0.2/salesforcer/build/vignette.rds                                                       |binary
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 salesforcer-1.0.2/salesforcer/man/format_report_row.Rd                                                 |    9 
 salesforcer-1.0.2/salesforcer/man/parse_report_detail_rows.Rd                                          |    9 
 salesforcer-1.0.2/salesforcer/man/sf_batch_status_bulk.Rd                                              |    2 
 salesforcer-1.0.2/salesforcer/man/sf_control.Rd                                                        |   15 
 salesforcer-1.0.2/salesforcer/man/sf_convert_lead.Rd                                                   |    9 
 salesforcer-1.0.2/salesforcer/man/sf_copy_report.Rd                                                    |    2 
 salesforcer-1.0.2/salesforcer/man/sf_create.Rd                                                         |    9 
 salesforcer-1.0.2/salesforcer/man/sf_create_attachment.Rd                                              |   16 
 salesforcer-1.0.2/salesforcer/man/sf_create_batches_bulk.Rd                                            |    8 
 salesforcer-1.0.2/salesforcer/man/sf_create_report.Rd                                                  |    2 
 salesforcer-1.0.2/salesforcer/man/sf_delete.Rd                                                         |    9 
 salesforcer-1.0.2/salesforcer/man/sf_delete_report.Rd                                                  |    2 
 salesforcer-1.0.2/salesforcer/man/sf_download_attachment.Rd                                            |    6 
 salesforcer-1.0.2/salesforcer/man/sf_execute_report.Rd                                                 |   11 
 salesforcer-1.0.2/salesforcer/man/sf_find_duplicates.Rd                                                |    9 
 salesforcer-1.0.2/salesforcer/man/sf_find_duplicates_by_id.Rd                                          |    9 
 salesforcer-1.0.2/salesforcer/man/sf_get_all_jobs_bulk.Rd                                              |    2 
 salesforcer-1.0.2/salesforcer/man/sf_get_all_query_jobs_bulk.Rd                                        |    2 
 salesforcer-1.0.2/salesforcer/man/sf_get_report_instance_results.Rd                                    |    9 
 salesforcer-1.0.2/salesforcer/man/sf_job_batches_bulk.Rd                                               |    2 
 salesforcer-1.0.2/salesforcer/man/sf_list_report_fields.Rd                                             |    2 
 salesforcer-1.0.2/salesforcer/man/sf_list_report_filter_operators.Rd                                   |    2 
 salesforcer-1.0.2/salesforcer/man/sf_list_report_types.Rd                                              |    2 
 salesforcer-1.0.2/salesforcer/man/sf_list_reports.Rd                                                   |    2 
 salesforcer-1.0.2/salesforcer/man/sf_query.Rd                                                          |    9 
 salesforcer-1.0.2/salesforcer/man/sf_query_bulk_v1.Rd                                                  |    9 
 salesforcer-1.0.2/salesforcer/man/sf_query_bulk_v2.Rd                                                  |    9 
 salesforcer-1.0.2/salesforcer/man/sf_query_report.Rd                                                   |    2 
 salesforcer-1.0.2/salesforcer/man/sf_query_result_bulk.Rd                                              |    9 
 salesforcer-1.0.2/salesforcer/man/sf_query_result_bulk_v1.Rd                                           |    9 
 salesforcer-1.0.2/salesforcer/man/sf_query_result_bulk_v2.Rd                                           |    9 
 salesforcer-1.0.2/salesforcer/man/sf_retrieve.Rd                                                       |    9 
 salesforcer-1.0.2/salesforcer/man/sf_run_bulk_operation.Rd                                             |   15 
 salesforcer-1.0.2/salesforcer/man/sf_run_bulk_query.Rd                                                 |    9 
 salesforcer-1.0.2/salesforcer/man/sf_run_report.Rd                                                     |   11 
 salesforcer-1.0.2/salesforcer/man/sf_search.Rd                                                         |    9 
 salesforcer-1.0.2/salesforcer/man/sf_update.Rd                                                         |    9 
 salesforcer-1.0.2/salesforcer/man/sf_update_attachment.Rd                                              |    4 
 salesforcer-1.0.2/salesforcer/man/sf_update_report.Rd                                                  |    2 
 salesforcer-1.0.2/salesforcer/man/sf_upsert.Rd                                                         |    9 
 salesforcer-1.0.2/salesforcer/man/valid_metadata_list.Rd                                               |    2 
 salesforcer-1.0.2/salesforcer/tests/testthat/salesforcer_token.rds                                     |binary
 salesforcer-1.0.2/salesforcer/tests/testthat/salesforcer_token.rds.gpg                                 |binary
 salesforcer-1.0.2/salesforcer/tests/testthat/test-auth-basic.R                                         |    2 
 salesforcer-1.0.2/salesforcer/tests/testthat/test-org-utils.R                                          |    2 
 salesforcer-1.0.2/salesforcer/tests/testthat/test-report.R                                             |  213 
 salesforcer-1.0.2/salesforcer/tests/testthat/test-rest.R                                               |   96 
 salesforcer-1.0.2/salesforcer/vignettes/getting-started.Rmd                                            |    2 
 salesforcer-1.0.2/salesforcer/vignettes/supported-queries.Rmd                                          |    2 
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 salesforcer-1.0.2/salesforcer/vignettes/working-with-attachments.Rmd                                   |    4 
 salesforcer-1.0.2/salesforcer/vignettes/working-with-bulk-apis.Rmd                                     |    2 
 salesforcer-1.0.2/salesforcer/vignettes/working-with-reports.Rmd                                       |    2 
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Package cpp11tesseract (with last version 5.3.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2024-10-22 5.3.2

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Package redatam (with last version 2.0.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2024-11-04 2.0.2
2024-10-21 2.0.0

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New package RCPA with initial version 0.2.5
Package: RCPA
Title: Consensus Pathway Analysis
Version: 0.2.5
Description: Provides a set of functions to perform pathway analysis and meta-analysis from multiple gene expression datasets, as well as visualization of the results. This package wraps functionality from the following packages: Ritchie et al. (2015) <doi:10.1093/nar/gkv007>, Love et al. (2014) <doi:10.1186/s13059-014-0550-8>, Robinson et al. (2010) <doi:10.1093/bioinformatics/btp616>, Korotkevich et al. (2016) <arxiv:10.1101/060012>, Efron et al. (2015) <https://CRAN.R-project.org/package=GSA>, and Gu et al. (2012) <https://CRAN.R-project.org/package=CePa>.
License: GPL-3
Encoding: UTF-8
Depends: R (>= 4.0), tidyr, dplyr, ggplot2, utils, stats
Imports: AnnotationDbi, SummarizedExperiment, BiocManager, Biobase, DESeq2, GEOquery, edgeR, limma, stringr(>= 1.5.0), ggnewscale, ggrepel, graph, httr, rlang, ggpattern, scales, RobustRankAggreg, methods, jsonlite, IRdisplay
Suggests: knitr, rmarkdown, markdown, testthat (>= 3.0.0), ROntoTools, fgsea, GSA, CePa, meta, png, ggvenn, RCurl, XML, S4Vectors, hgu133plus2.db, org.Hs.eg.db, pd.hg.u133.plus.2, oligo
VignetteBuilder: knitr, rmarkdown
BugReports: https://github.com/tinnlab/RCPA/issues
NeedsCompilation: no
Packaged: 2024-11-05 17:18:25 UTC; hanguyen
Author: Ha Nguyen [aut, cre], Phi Bya [aut], Zeynab Maghsoudi [aut], Tin Nguyen [fnd]
Maintainer: Ha Nguyen <hvn0006@auburn.edu>
Repository: CRAN
Date/Publication: 2024-11-06 08:20:05 UTC

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Package minired updated to version 1.0.1 with previous version 1.0.0 dated 2024-10-25

Title: R Interface to 'Redatam' Library
Description: This package is deprecated. Please use 'redatamx' instead. Provides an API to work with 'Redatam' (see <https://redatam.org>) databases in both formats: 'RXDB' (new format) and 'DICX' (old format) and running 'Redatam' programs written in 'SPC' language. It's a wrapper around 'Redatam' core and provides functions to open/close a database (redatam_open()/redatam_close()), list entities and variables from the database (redatam_entities(), redatam_variables()) and execute a 'SPC' program and gets the results as data frames (redatam_query(), redatam_run()).
Author: Jaime Salvador [aut, cre] , CELADE [cph]
Maintainer: Jaime Salvador <jaime.salvador@ideasybits.com>

Diff between minired versions 1.0.0 dated 2024-10-25 and 1.0.1 dated 2024-11-06

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New package imuf with initial version 0.3.0
Package: imuf
Title: Estimate Orientation of an Inertial Measurement Unit
Version: 0.3.0
Description: Estimate the orientation of an inertial measurement unit (IMU) with a 3-axis accelerometer and a 3-axis gyroscope using a complementary filter. 'imuf' takes an IMU's accelerometer and gyroscope readings, time duration, its initial orientation, and a gain factor as inputs, and returns an estimate of the IMU's final orientation.
License: GPL (>= 3)
Encoding: UTF-8
LinkingTo: Rcpp, RcppEigen
Imports: Rcpp
Suggests: testthat (>= 3.0.0)
URL: https://github.com/gitboosting/imuf, https://gitboosting.github.io/imuf/
BugReports: https://github.com/gitboosting/imuf/issues
NeedsCompilation: yes
Packaged: 2024-11-06 02:53:38 UTC; mkcha
Author: Felix Chan [aut, cre, cph]
Maintainer: Felix Chan <chanfelix@gmail.com>
Repository: CRAN
Date/Publication: 2024-11-06 08:20:02 UTC

More information about imuf at CRAN
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Package babelmixr2 updated to version 0.1.5 with previous version 0.1.4 dated 2024-09-23

Title: Use 'nlmixr2' to Interact with Open Source and Commercial Software
Description: Run other estimation and simulation software via the 'nlmixr2' (Fidler et al (2019) <doi:10.1002/psp4.12445>) interface including 'PKNCA', 'NONMEM' and 'Monolix'. While not required, you can get/install the 'lixoftConnectors' package in the 'Monolix' installation, as described at the following url <https://monolixsuite.slp-software.com/r-functions/2024R1/installation-and-initialization>. When 'lixoftConnectors' is available, 'Monolix' can be run directly instead of setting up command line usage.
Author: Matthew Fidler [aut, cre] , Bill Denney [aut] , Nook Fulloption [ctb]
Maintainer: Matthew Fidler <matthew.fidler@gmail.com>

Diff between babelmixr2 versions 0.1.4 dated 2024-09-23 and 0.1.5 dated 2024-11-06

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 babelmixr2-0.1.5/babelmixr2/NEWS.md                                                          |   19 
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 babelmixr2-0.1.5/babelmixr2/src/init.c                                                       |    4 
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Package aRtsy updated to version 1.0.0 with previous version 0.2.4 dated 2023-08-21

Title: Generative Art with 'ggplot2'
Description: Provides algorithms for creating artworks in the 'ggplot2' language that incorporate some form of randomness.
Author: Koen Derks [aut, cre]
Maintainer: Koen Derks <koen-derks@hotmail.com>

Diff between aRtsy versions 0.2.4 dated 2023-08-21 and 1.0.0 dated 2024-11-06

 DESCRIPTION          |   10 +++++-----
 MD5                  |   22 +++++++++++-----------
 NEWS.md              |    5 +++++
 R/canvas_flame.R     |    4 ++--
 R/canvas_mesh.R      |    2 +-
 R/canvas_mosaic.R    |    4 +++-
 README.md            |    2 +-
 inst/CITATION        |    7 ++++---
 man/canvas_flame.Rd  |    4 ++--
 man/canvas_mesh.Rd   |    2 +-
 man/figures/logo.png |binary
 src/canvas_flame.cpp |    2 +-
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Package allofus updated to version 1.2.0 with previous version 1.1.0 dated 2024-04-04

Title: Interface for 'All of Us' Researcher Workbench
Description: Streamline use of the 'All of Us' Researcher Workbench (<https://www.researchallofus.org/data-tools/workbench/>)with tools to extract and manipulate data from the 'All of Us' database. Increase interoperability with the Observational Health Data Science and Informatics ('OHDSI') tool stack by decreasing reliance of 'All of Us' tools and allowing for cohort creation via 'Atlas'. Improve reproducible and transparent research using 'All of Us'.
Author: Louisa Smith [aut, cph] , Rob Cavanaugh [aut, cre, cph]
Maintainer: Rob Cavanaugh <r.cavanaugh@northeastern.edu>

Diff between allofus versions 1.1.0 dated 2024-04-04 and 1.2.0 dated 2024-11-06

 DESCRIPTION                                  |    8 -
 MD5                                          |   77 ++++++++--------
 NAMESPACE                                    |    1 
 NEWS.md                                      |   17 +++
 R/allofus-package.R                          |    1 
 R/aou_atlas_cohort.R                         |   25 ++++-
 R/aou_concept_set.R                          |   97 ++++++++++++++++----
 R/aou_connect.R                              |    6 +
 R/aou_ls.R                                   |    2 
 R/aou_survey.R                               |   32 ++++--
 R/aou_temp_tables.R                          |    4 
 R/data.R                                     |   14 ++
 README.md                                    |   79 ++++++++--------
 build/vignette.rds                           |binary
 data/aou_concept_codes.rda                   |only
 inst/CITATION                                |   13 +-
 inst/doc/allofus.R                           |   11 ++
 inst/doc/allofus.Rmd                         |   21 ++++
 inst/doc/allofus.html                        |  128 +++++++++++++++------------
 inst/doc/atlas.Rmd                           |    3 
 inst/doc/atlas.html                          |    6 +
 inst/doc/data.Rmd                            |    2 
 inst/doc/data.html                           |    2 
 inst/pkgdown.yml                             |    2 
 man/aou_atlas_cohort.Rd                      |   19 ++--
 man/aou_bucket_to_workspace.Rd               |    2 
 man/aou_collect.Rd                           |    4 
 man/aou_concept_codes.Rd                     |only
 man/aou_concept_set.Rd                       |    3 
 man/aou_connect.Rd                           |    3 
 man/aou_sql.Rd                               |    3 
 man/aou_survey.Rd                            |    2 
 tests/testthat/test-aou_concept_set.R        |    6 -
 tests/testthat/test-aou_concept_set_combos.R |only
 tests/testthat/test-aou_connect.R            |    2 
 tests/testthat/test-aou_ls.R                 |    5 -
 vignettes/allofus.Rmd                        |   21 ++++
 vignettes/atlas.Rmd                          |    3 
 vignettes/data.Rmd                           |    2 
 vignettes/web_only/health_codebook.Rmd       |    7 -
 vignettes/web_only/searchable_codebook.Rmd   |    5 -
 41 files changed, 437 insertions(+), 201 deletions(-)

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Package quickcode updated to version 1.0.2 with previous version 1.0.1 dated 2024-10-11

Title: Quick and Essential 'R' Tricks for Better Scripts
Description: The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to improve your scripts. Improve the quality and reproducibility of 'R' scripts.
Author: Obinna Obianom [aut, cre], Brice Richard [aut]
Maintainer: Obinna Obianom <idonshayo@gmail.com>

Diff between quickcode versions 1.0.1 dated 2024-10-11 and 1.0.2 dated 2024-11-06

 quickcode-1.0.1/quickcode/R/0.7_equations2.R                                  |only
 quickcode-1.0.2/quickcode/DESCRIPTION                                         |    6 -
 quickcode-1.0.2/quickcode/MD5                                                 |   36 +++---
 quickcode-1.0.2/quickcode/NAMESPACE                                           |    2 
 quickcode-1.0.2/quickcode/NEWS.md                                             |    5 
 quickcode-1.0.2/quickcode/R/data_pop.R                                        |   17 +++
 quickcode-1.0.2/quickcode/R/data_shuffle.R                                    |   28 +++++
 quickcode-1.0.2/quickcode/R/math.R                                            |only
 quickcode-1.0.2/quickcode/R/pairDist.R                                        |only
 quickcode-1.0.2/quickcode/R/vector_pop.R                                      |    9 +
 quickcode-1.0.2/quickcode/R/vector_shuffle.R                                  |   14 +-
 quickcode-1.0.2/quickcode/inst/doc/add_today_date_to_filenames_quickcode.html |   54 +++++-----
 quickcode-1.0.2/quickcode/inst/doc/nullish_coalescing_operator_r.html         |    4 
 quickcode-1.0.2/quickcode/inst/doc/quickcode_r_introduction.html              |    4 
 quickcode-1.0.2/quickcode/inst/doc/track_function_usage_r.html                |    4 
 quickcode-1.0.2/quickcode/man/data_pop.Rd                                     |    6 +
 quickcode-1.0.2/quickcode/man/data_shuffle.Rd                                 |   13 ++
 quickcode-1.0.2/quickcode/man/machine_learning.Rd                             |    2 
 quickcode-1.0.2/quickcode/man/mathmisc.Rd                                     |only
 quickcode-1.0.2/quickcode/man/vector_pop.Rd                                   |    6 +
 quickcode-1.0.2/quickcode/man/vector_shuffle.Rd                               |    7 +
 21 files changed, 157 insertions(+), 60 deletions(-)

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New package card with initial version 0.1.1
Package: card
Title: Cardiovascular Applications in Research Data
Version: 0.1.1
Description: A collection of cardiovascular research datasets and analytical tools, including methods for cardiovascular procedural data, such as electrocardiography, echocardiography, and catheterization data. Additional methods exist for analysis of procedural billing codes.
License: MIT + file LICENSE
URL: https://cran.r-project.org/package=card
BugReports: https://github.com/shah-in-boots/card/issues
Encoding: UTF-8
LazyData: true
Depends: R (>= 4.1),
Imports: stats, generics, ggplot2, tidyr, dplyr, purrr, tibble, rlang, parsnip, hardhat,
Suggests: kableExtra, knitr, rmarkdown, covr, testthat, broom.mixed, ggrepel
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2024-10-29 03:08:29 UTC; asshah4
Author: Anish S. Shah [aut, cre, cph]
Maintainer: Anish S. Shah <shah.in.boots@gmail.com>
Repository: CRAN
Date/Publication: 2024-11-06 07:40:02 UTC

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Package EurosarcBayes (with last version 1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2017-11-15 1.1
2015-11-18 1.0

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Package MOSS (with last version 0.2.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2022-03-25 0.2.2
2021-07-16 0.2.0
2021-01-19 0.1.0

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Package GUIDE (with last version 1.2.7) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2018-10-06 1.2.7
2016-09-13 1.2.3.1
2016-09-11 1.2.3
2013-09-23 1.0.9
2013-09-03 1.0.8
2013-03-12 0.99.5
2013-03-11 0.99.2

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Package ymd updated to version 0.1.3 with previous version 0.1.2 dated 2024-08-23

Title: Parse 'YMD' Format Number or String to Date
Description: Convert 'YMD' format number or string to Date efficiently, using Rust's standard library. It also provides helper functions to handle Date, e.g., quick finding the beginning or end of the given period, adding months to Date, etc.
Author: Xianying Tan [aut, cre] , Hiroaki Yutani [ctb] , The authors of the dependency Rust crates [ctb]
Maintainer: Xianying Tan <shrektan@126.com>

Diff between ymd versions 0.1.2 dated 2024-08-23 and 0.1.3 dated 2024-11-06

 DESCRIPTION                |    6 +-
 LICENSE.note               |    7 +++
 MD5                        |   18 ++++----
 NEWS.md                    |    4 +
 inst/AUTHORS               |   48 +++++++++++++----------
 src/rust/Cargo.lock        |   92 ++++++++++++++++++++++++---------------------
 src/rust/Cargo.toml        |    2 
 src/rust/src/rdate.rs      |    8 ++-
 src/rust/vendor.tar.xz     |binary
 tests/testthat/test-beop.R |   10 ++++
 10 files changed, 117 insertions(+), 78 deletions(-)

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