Title: Robust Inference for Covariate Adjustment in Randomized Clinical
Trials
Description: Performs robust estimation and inference when using covariate adjustment and/or covariate-adaptive randomization in randomized clinical trials.
Ting Ye, Jun Shao, Yanyao Yi, Qinyuan Zhao (2023) <doi:10.1080/01621459.2022.2049278>.
Ting Ye, Marlena Bannick, Yanyao Yi, Jun Shao (2023) <doi:10.1080/24754269.2023.2205802>.
Ting Ye, Jun Shao, Yanyao Yi (2023) <doi:10.1093/biomet/asad045>.
Marlena Bannick, Jun Shao, Jingyi Liu, Yu Du, Yanyao Yi, Ting Ye (2024) <doi:10.48550/arXiv.2306.10213>.
Author: Marlena Bannick [cre, aut] ,
Ting Ye [aut],
Yanyao Yi [aut],
Faith Bian [aut]
Maintainer: Marlena Bannick <mnorwood@uw.edu>
Diff between RobinCar versions 0.3.0 dated 2024-05-20 and 0.3.1 dated 2024-11-06
DESCRIPTION | 12 ++++++------ MD5 | 11 ++++++----- NEWS.md | 6 ++++++ R/robincar-SL.R | 4 ++-- R/variance-linear.R | 7 ++++--- man/robincar_SL.Rd | 4 ++-- tests/testthat/test-factor-ordering.R |only 7 files changed, 26 insertions(+), 18 deletions(-)
Title: Probability Theory for Selecting Candidates in Plant Breeding
Description: Use probability theory under the Bayesian framework for calculating the risk of selecting candidates in a multi-environment context. Contained are functions used to fit a Bayesian multi-environment model (based on the available presets), extract posterior values and maximum posterior values, compute the variance components, check the model’s convergence, and calculate the probabilities. For both across and within-environments scopes, the package computes the probability of superior performance and the pairwise probability of superior performance. Furthermore, the probability of superior stability and the pairwise probability of superior stability across environments is estimated. A joint probability of superior performance and stability is also provided.
Author: Saulo Chaves [aut, cre] ,
Kaio Dias [aut, cph] ,
Matheus Krause [aut]
Maintainer: Saulo Chaves <saulo.chaves@ufv.br>
Diff between ProbBreed versions 1.0.4.2 dated 2024-08-28 and 1.0.4.3 dated 2024-11-06
ProbBreed-1.0.4.2/ProbBreed/inst/stan/entrymean.stan |only ProbBreed-1.0.4.2/ProbBreed/src/stanExports_entrymean.cc |only ProbBreed-1.0.4.2/ProbBreed/src/stanExports_entrymean.h |only ProbBreed-1.0.4.3/ProbBreed/DESCRIPTION | 6 ProbBreed-1.0.4.3/ProbBreed/MD5 | 154 +- ProbBreed-1.0.4.3/ProbBreed/NAMESPACE | 64 - ProbBreed-1.0.4.3/ProbBreed/NEWS.md | 6 ProbBreed-1.0.4.3/ProbBreed/R/ProbBreed-package.R | 72 - ProbBreed-1.0.4.3/ProbBreed/R/bayes_met.R | 345 +++-- ProbBreed-1.0.4.3/ProbBreed/R/extr_outs.R | 860 +++++++------- ProbBreed-1.0.4.3/ProbBreed/R/maize.R | 58 ProbBreed-1.0.4.3/ProbBreed/R/prob_sup.R | 607 +++++---- ProbBreed-1.0.4.3/ProbBreed/R/soy.R | 56 ProbBreed-1.0.4.3/ProbBreed/R/stanmodels.R | 83 - ProbBreed-1.0.4.3/ProbBreed/README.md | 512 ++++---- ProbBreed-1.0.4.3/ProbBreed/build/partial.rdb |binary ProbBreed-1.0.4.3/ProbBreed/inst/CITATION | 28 ProbBreed-1.0.4.3/ProbBreed/inst/stan/IBD1.stan | 140 +- ProbBreed-1.0.4.3/ProbBreed/inst/stan/IBD2.stan | 218 +-- ProbBreed-1.0.4.3/ProbBreed/inst/stan/IBD3.stan | 218 +-- ProbBreed-1.0.4.3/ProbBreed/inst/stan/IBD4.stan | 250 ++-- ProbBreed-1.0.4.3/ProbBreed/inst/stan/IBD5.stan | 178 +- ProbBreed-1.0.4.3/ProbBreed/inst/stan/IBD6.stan | 270 ++-- ProbBreed-1.0.4.3/ProbBreed/inst/stan/IBD7.stan | 268 ++-- ProbBreed-1.0.4.3/ProbBreed/inst/stan/IBD8.stan | 310 ++--- ProbBreed-1.0.4.3/ProbBreed/inst/stan/RCBD1.stan | 170 +- ProbBreed-1.0.4.3/ProbBreed/inst/stan/RCBD2.stan | 204 +-- ProbBreed-1.0.4.3/ProbBreed/inst/stan/RCBD3.stan | 202 +-- ProbBreed-1.0.4.3/ProbBreed/inst/stan/RCBD4.stan | 234 +-- ProbBreed-1.0.4.3/ProbBreed/inst/stan/RCBD5.stan | 162 +- ProbBreed-1.0.4.3/ProbBreed/inst/stan/RCBD6.stan | 250 ++-- ProbBreed-1.0.4.3/ProbBreed/inst/stan/RCBD7.stan | 248 ++-- ProbBreed-1.0.4.3/ProbBreed/inst/stan/RCBD8.stan | 290 ++-- ProbBreed-1.0.4.3/ProbBreed/inst/stan/entrymean1.stan |only ProbBreed-1.0.4.3/ProbBreed/inst/stan/entrymean2.stan |only ProbBreed-1.0.4.3/ProbBreed/man/ProbBreed-package.Rd | 90 - ProbBreed-1.0.4.3/ProbBreed/man/bayes_met.Rd | 432 +++---- ProbBreed-1.0.4.3/ProbBreed/man/extr_outs.Rd | 118 - ProbBreed-1.0.4.3/ProbBreed/man/maize.Rd | 80 - ProbBreed-1.0.4.3/ProbBreed/man/plot.extr.Rd | 108 - ProbBreed-1.0.4.3/ProbBreed/man/plot.probsup.Rd | 168 +- ProbBreed-1.0.4.3/ProbBreed/man/print.extr.Rd | 38 ProbBreed-1.0.4.3/ProbBreed/man/print.probsup.Rd | 38 ProbBreed-1.0.4.3/ProbBreed/man/prob_sup.Rd | 366 ++--- ProbBreed-1.0.4.3/ProbBreed/man/soy.Rd | 78 - ProbBreed-1.0.4.3/ProbBreed/src/Makevars.win |only ProbBreed-1.0.4.3/ProbBreed/src/RcppExports.cpp | 6 ProbBreed-1.0.4.3/ProbBreed/src/stanExports_IBD1.cc | 34 ProbBreed-1.0.4.3/ProbBreed/src/stanExports_IBD1.h | 150 +- ProbBreed-1.0.4.3/ProbBreed/src/stanExports_IBD2.cc | 34 ProbBreed-1.0.4.3/ProbBreed/src/stanExports_IBD2.h | 186 +-- ProbBreed-1.0.4.3/ProbBreed/src/stanExports_IBD3.cc | 34 ProbBreed-1.0.4.3/ProbBreed/src/stanExports_IBD3.h | 186 +-- ProbBreed-1.0.4.3/ProbBreed/src/stanExports_IBD4.cc | 34 ProbBreed-1.0.4.3/ProbBreed/src/stanExports_IBD4.h | 222 +-- ProbBreed-1.0.4.3/ProbBreed/src/stanExports_IBD5.cc | 34 ProbBreed-1.0.4.3/ProbBreed/src/stanExports_IBD5.h | 138 +- ProbBreed-1.0.4.3/ProbBreed/src/stanExports_IBD6.cc | 34 ProbBreed-1.0.4.3/ProbBreed/src/stanExports_IBD6.h | 174 +- ProbBreed-1.0.4.3/ProbBreed/src/stanExports_IBD7.cc | 34 ProbBreed-1.0.4.3/ProbBreed/src/stanExports_IBD7.h | 174 +- ProbBreed-1.0.4.3/ProbBreed/src/stanExports_IBD8.cc | 34 ProbBreed-1.0.4.3/ProbBreed/src/stanExports_IBD8.h | 210 +-- ProbBreed-1.0.4.3/ProbBreed/src/stanExports_RCBD1.cc | 34 ProbBreed-1.0.4.3/ProbBreed/src/stanExports_RCBD1.h | 132 +- ProbBreed-1.0.4.3/ProbBreed/src/stanExports_RCBD2.cc | 34 ProbBreed-1.0.4.3/ProbBreed/src/stanExports_RCBD2.h | 168 +- ProbBreed-1.0.4.3/ProbBreed/src/stanExports_RCBD3.cc | 34 ProbBreed-1.0.4.3/ProbBreed/src/stanExports_RCBD3.h | 168 +- ProbBreed-1.0.4.3/ProbBreed/src/stanExports_RCBD4.cc | 34 ProbBreed-1.0.4.3/ProbBreed/src/stanExports_RCBD4.h | 204 +-- ProbBreed-1.0.4.3/ProbBreed/src/stanExports_RCBD5.cc | 34 ProbBreed-1.0.4.3/ProbBreed/src/stanExports_RCBD5.h | 120 - ProbBreed-1.0.4.3/ProbBreed/src/stanExports_RCBD6.cc | 34 ProbBreed-1.0.4.3/ProbBreed/src/stanExports_RCBD6.h | 156 +- ProbBreed-1.0.4.3/ProbBreed/src/stanExports_RCBD7.cc | 34 ProbBreed-1.0.4.3/ProbBreed/src/stanExports_RCBD7.h | 156 +- ProbBreed-1.0.4.3/ProbBreed/src/stanExports_RCBD8.cc | 34 ProbBreed-1.0.4.3/ProbBreed/src/stanExports_RCBD8.h | 192 +-- ProbBreed-1.0.4.3/ProbBreed/src/stanExports_entrymean1.cc |only ProbBreed-1.0.4.3/ProbBreed/src/stanExports_entrymean1.h |only ProbBreed-1.0.4.3/ProbBreed/src/stanExports_entrymean2.cc |only ProbBreed-1.0.4.3/ProbBreed/src/stanExports_entrymean2.h |only 83 files changed, 5710 insertions(+), 5555 deletions(-)
Title: Spatial Statistical Modeling and Prediction
Description: Fit, summarize, and predict for a variety of spatial statistical models applied to point-referenced and areal (lattice) data. Parameters are estimated using various methods. Additional modeling features include anisotropy, non-spatial random effects, partition factors, big data approaches, and more. Model-fit statistics are used to summarize, visualize, and compare models. Predictions at unobserved locations are readily obtainable. For additional details, see Dumelle et al. (2023) <doi:10.1371/journal.pone.0282524>.
Author: Michael Dumelle [aut, cre] ,
Matt Higham [aut] ,
Ryan A. Hill [ctb] ,
Michael Mahon [ctb] ,
Jay M. Ver Hoef [aut]
Maintainer: Michael Dumelle <Dumelle.Michael@epa.gov>
Diff between spmodel versions 0.8.0 dated 2024-08-27 and 0.9.0 dated 2024-11-06
DESCRIPTION | 6 MD5 | 136 +- NAMESPACE | 11 NEWS.md | 437 +++--- R/anova.R | 457 +++--- R/cov_betahat_adjust.R | 2 R/cov_estimate_gloglik.R | 2 R/cov_estimate_sv.R | 3 R/cov_initial_search.R | 2278 +++++++++++++++++----------------- R/cov_initial_search_glm.R | 2111 +++++++++++++++---------------- R/data.R | 423 +++--- R/get_data_object.R | 1136 ++++++++--------- R/get_data_object_glm.R | 1259 +++++++++--------- R/get_initial_range.R | 4 R/get_model_stats.R | 712 +++++----- R/get_spcov_params.R | 2 R/glances.R | 308 ++-- R/glances_glm.R | 82 - R/glogclik.R | 5 R/gloglik_anis.R | 3 R/gloglik_products.R | 2 R/laploglik_anis.R | 3 R/laploglik_products.R | 2 R/loocv.R | 2 R/predict.R | 2460 ++++++++++++++++++------------------- R/predict_glm.R | 1960 +++++++++++++++-------------- R/print.R | 4 R/print_glm.R | 4 R/spautor.R | 562 ++++---- R/spautor_checks.R | 2 R/spcov_initial.R | 4 R/spcov_initial_NA.R | 4 R/spcov_initial_NA_glm.R | 5 R/spcov_matrix.R | 4 R/spcov_optim2orig.R | 30 R/spcov_orig2optim.R | 66 R/spcov_params.R | 12 R/spcov_vector.R | 4 R/spgautor_checks.R | 2 R/spglm.R | 972 +++++++------- R/splm.R | 828 ++++++------ R/spmodel-package.R | 34 R/sprnorm.R | 6 R/svloss.R | 5 R/tidy.R | 2 R/tidy_glm.R | 2 R/use_glogclik.R | 10 R/use_gloglik_anis.R | 6 R/use_gloglik_iid.R | 116 - R/use_laploglik_anis.R | 3 R/use_svloss.R | 12 README.md | 2 build/partial.rdb |binary build/vignette.rds |binary data/seal.rda |binary inst/doc/introduction.html | 2 man/figures/logo.png |binary man/moose.Rd | 2 man/predict.spmodel.Rd | 39 man/seal.Rd | 5 man/spautor.Rd | 2 man/spcov_initial.Rd | 2 man/spcov_params.Rd | 2 man/spglm.Rd | 22 man/splm.Rd | 12 man/sprnorm.Rd | 11 tests/testthat/test-extras-spglm.R | 13 tests/testthat/test-extras-splm.R | 23 tests/testthat/test-spglm.R | 6 69 files changed, 8549 insertions(+), 8099 deletions(-)
Title: A Lightweight Version of R Markdown
Description: Render R Markdown to Markdown (without using 'knitr'), and Markdown
to lightweight HTML or 'LaTeX' documents with the 'commonmark' package (instead
of 'Pandoc'). Some missing Markdown features in 'commonmark' are also
supported, such as raw HTML or 'LaTeX' blocks, 'LaTeX' math, superscripts,
subscripts, footnotes, element attributes, and appendices,
but not all 'Pandoc' Markdown features are (or will be) supported. With
additional JavaScript and CSS, you can also create HTML slides and articles.
This package can be viewed as a trimmed-down version of R Markdown and
'knitr'. It does not aim at rich Markdown features or a large variety of
output formats (the primary formats are HTML and 'LaTeX'). Book and website
projects of multiple input documents are also supported.
Author: Yihui Xie [aut, cre]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between litedown versions 0.3 dated 2024-10-16 and 0.4 dated 2024-11-06
DESCRIPTION | 8 ++--- MD5 | 32 +++++++++++----------- NEWS.md | 16 +++++++++++ R/fuse.R | 49 ++++++++++++++++++++++------------- R/mark.R | 18 +++++++++--- R/package.R | 45 ++++++++++++++++++++++---------- R/preview.R | 38 +++++++++++++++++++++++---- R/site.R | 3 +- R/utils.R | 48 +++++++++++++++++++++++++++------- build/vignette.rds |binary inst/doc/markdown-examples.html | 6 ++-- inst/doc/markdown-output.html | 8 ++--- inst/doc/slides.Rmd | 42 +++++++++++++++++++++++++++++- inst/doc/slides.html | 56 +++++++++++++++++++++++++++++++--------- inst/resources/server.js | 31 ++++++++++++---------- tests/tests.Rout.save | 2 - vignettes/slides.Rmd | 42 +++++++++++++++++++++++++++++- 17 files changed, 338 insertions(+), 106 deletions(-)
Title: Statistical Analysis of Textual Data
Description: Provides a set of functions devoted to multivariate exploratory statistics on textual data. Classical methods such as correspondence analysis and agglomerative hierarchical clustering are available. Chronologically constrained agglomerative hierarchical clustering enriched with labelled-by-words trees is offered. Given a division of the corpus into parts, their characteristic words and documents are identified. Further, accessing to 'FactoMineR' functions is very easy. Two of them are relevant in textual domain. MFA() addresses multiple lexical table allowing applications such as dealing with multilingual corpora as well as simultaneously analyzing both open-ended and closed questions in surveys. See <http://xplortext.unileon.es> for examples.
Author: Ramon Alvarez-Esteban [aut, cre]
,
Monica Becue-Bertaut [aut] ,
Josep-Anton Sanchez-Espigares [ctb]
,
Belchin Adriyanov Kostov [ctb]
Maintainer: Ramon Alvarez-Esteban <ramon.alvarez@unileon.es>
Diff between Xplortext versions 1.5.3 dated 2023-11-09 and 1.5.4 dated 2024-11-06
DESCRIPTION | 37 +- MD5 | 48 +- NAMESPACE | 27 + R/LexCA.R | 785 ++++++++++++++++++++++----------------------- R/LexCHCca.R | 44 ++ R/LexChar.R | 86 ++-- R/LexHCca.R | 304 ++++++++++------- R/TextData.R | 19 - R/ellipseLexCA.R | 2 R/plot.LexCA.R | 76 +++- R/plot.LexCHCca.R | 1 R/plot.LexChar.R | 91 +++-- R/plot.LexGalt.R | 2 R/plot.LexHCca.R | 813 +++++++++++++++++++++++++++++++++++------------ R/plot.TextData.R | 20 - build/partial.rdb |binary inst/CITATION | 6 inst/Xplortext.pdf |binary man/LexCHCca.Rd | 3 man/LexGalt.Rd | 2 man/LexHCca.Rd | 21 - man/TextData.Rd | 8 man/Xplortext-package.Rd | 7 man/plot.LexCA.Rd | 4 man/plot.LexHCca.Rd | 78 ++-- 25 files changed, 1558 insertions(+), 926 deletions(-)
Title: Plant Phenotyping and Bayesian Statistics
Description: Analyse common types of plant phenotyping data, provide a simplified interface
to longitudinal growth modeling and select Bayesian statistics,
and streamline use of 'PlantCV' output.
Several Bayesian methods and reporting guidelines for Bayesian methods are described in
Kruschke (2018) <doi:10.1177/2515245918771304>,
Kruschke (2013) <doi:10.1037/a0029146>, and Kruschke (2021) <doi:10.1038/s41562-021-01177-7>.
Author: Josh Sumner [aut, cre] ,
Jeffrey Berry [aut] ,
Noah Fahlgren [rev] ,
Donald Danforth Plant Science Center [cph]
Maintainer: Josh Sumner <jsumner@danforthcenter.org>
Diff between pcvr versions 1.0.0 dated 2024-09-05 and 1.1.1.0 dated 2024-11-06
DESCRIPTION | 6 MD5 | 274 ++++----- NAMESPACE | 8 NEWS.md | 44 + R/awkHelper.R | 24 R/barg.R | 10 R/brmDparHelper.R | 6 R/brmPlot.R | 152 ++++- R/brmSS.R | 42 - R/brmSSHelpers.R | 165 +++-- R/brmSurvPlot.R | 46 - R/brmViolin.R | 304 +++------- R/brms_segmentedForm.R | 12 R/bwoutliers.R | 101 +-- R/bwtime.R | 82 +- R/bwwater.R | 17 R/checkGroups.R | 25 R/combineDraws.R | 106 +-- R/conjugate.R | 10 R/conjugateMvSvTester.R | 2 R/conjugate_betaHelpers.R | 12 R/conjugate_bivariate_lognormalHelpers.R | 4 R/conjugate_bivariate_uniformHelpers.R | 22 R/conjugate_exponentialHelpers.R | 6 R/conjugate_gammaHelpers.R | 6 R/conjugate_gaussianHelpers.R | 6 R/conjugate_logNormal2Helpers.R | 2 R/conjugate_logNormalHelpers.R | 8 R/conjugate_negBinHelpers.R | 12 R/conjugate_paretoHelpers.R | 16 R/conjugate_poissonHelpers.R | 10 R/conjugate_tHelpers.R | 14 R/conjugate_vonmisesHelpers.R | 27 R/cumulativePheno.R | 121 ++-- R/distPlot.R | 63 +- R/emd.R | 109 +-- R/fitGrowth.R | 83 ++ R/flexSurvPlot.R | 13 R/frem.R | 46 + R/gam_helpers.R | 24 R/growthPlot.R | 7 R/growthSS.R | 45 - R/growthSim.R | 16 R/longitudinal_plot_helpers.R |only R/makeSurvData.R | 16 R/mgcvSS.R | 14 R/mvSS.R |only R/mvSim.R | 109 +++ R/mv_ag.R | 12 R/net.R | 13 R/netplot.R | 23 R/nlmePlot.R | 26 R/nlmeSS.R | 223 ++++--- R/nlrqPlot.R | 73 +- R/nlrqSS.R | 40 - R/nlsPlot.R | 178 ++++- R/parsePcvrForm.R | 38 - R/pca.R | 6 R/pcvjoyplot.R | 29 R/pcvrss.R |only R/pcvtheme.R | 3 R/plotPrior.R | 9 R/plsr.R | 28 R/readpcv.R | 48 - R/readpcv3.R | 49 - R/relativeTolerance.R | 93 +-- R/rqPlot.R | 122 +++- R/survSS.R | 15 R/testGrowth.R | 82 +- R/vipPlot.R | 59 + R/wue.R | 30 inst/doc/bellwether.R | 268 ++------ inst/doc/bellwether.Rmd | 349 ++--------- inst/doc/bellwether.html | 905 +++++++++++------------------- inst/doc/directional.R | 10 inst/doc/directional.Rmd | 10 inst/doc/directional.html | 14 inst/doc/longitudinal.R | 22 inst/doc/longitudinal.Rmd | 32 + inst/doc/longitudinal.html | 718 ++++++++++++++--------- inst/doc/roots.R | 10 inst/doc/roots.Rmd | 10 inst/doc/roots.html | 34 - man/awkHelper.Rd | 24 man/barg.Rd | 12 man/brmPlot.Rd | 14 man/brmSurvPlot.Rd | 40 - man/brmViolin.Rd | 74 -- man/bw.outliers.Rd | 101 +-- man/bw.time.Rd | 80 +- man/bw.water.Rd | 11 man/checkGroups.Rd | 5 man/combineDraws.Rd | 100 +-- man/conjugate.Rd | 10 man/cumulativePheno.Rd | 121 ++-- man/distributionPlot.Rd | 63 +- man/fitGrowth.Rd | 4 man/fitGrowthbrms.Rd | 12 man/fitGrowthlm.Rd |only man/fitGrowthnlrqgam.Rd | 2 man/fitGrowthrq.Rd |only man/flexsurvregPlot.Rd | 12 man/frem.Rd | 34 - man/growthPlot.Rd | 5 man/growthSS.Rd | 35 - man/growthSim.Rd | 9 man/mvSS.Rd |only man/mvSim.Rd | 38 - man/mv_ag.Rd | 12 man/net.plot.Rd | 23 man/nlrqPlot.Rd | 7 man/pcadf.Rd | 6 man/pcv.emd.Rd | 77 +- man/pcv.joyplot.Rd | 12 man/pcv.net.Rd | 11 man/pcv.plsr.Rd | 28 man/pcv_theme.Rd | 3 man/pcvrss-class.Rd |only man/plotPrior.Rd | 5 man/plotVIP.Rd | 29 man/print.pcvrss.Rd |only man/print.pcvrsssummary.Rd |only man/pwue.Rd | 30 man/read.pcv.3.Rd | 49 - man/read.pcv.Rd | 48 - man/relativeTolerance.Rd | 93 +-- man/rqPlot.Rd | 2 man/summary.pcvrss.Rd |only man/testGrowth.Rd | 7 tests/testthat/test-brmsInterceptModels.R | 36 - tests/testthat/test-brmsModels.R | 152 +++-- tests/testthat/test-conjugate.R | 3 tests/testthat/test-conjugate_mv_vs_sv.R | 12 tests/testthat/test-growthModels.R | 16 tests/testthat/test-growthSS_helpers.R | 3 tests/testthat/test-initializers.R | 4 tests/testthat/test-long_sv_workflow.R | 6 tests/testthat/test-multiGroupingModels.R |only tests/testthat/test-mvSSModels.R |only tests/testthat/test-survSS_helpers.R | 4 vignettes/bellwether.Rmd | 349 ++--------- vignettes/directional.Rmd | 10 vignettes/longitudinal.Rmd | 32 + vignettes/roots.Rmd | 10 144 files changed, 4162 insertions(+), 3551 deletions(-)
Title: Libraries, Data Dictionaries, and a Data Step for R
Description: Contains a set of functions to create data libraries,
generate data dictionaries, and simulate a data step.
The libname() function will load a directory of data into
a library in one line of code. The dictionary() function
will generate data dictionaries for individual
data frames or an entire library. And the datestep() function
will perform row-by-row data processing.
Author: David Bosak [aut, cre],
Brian Varney [ctb],
Archytas Clinical Solutions [cph]
Maintainer: David Bosak <dbosak01@gmail.com>
Diff between libr versions 1.3.4 dated 2024-07-19 and 1.3.7 dated 2024-11-06
DESCRIPTION | 19 +++++--- MD5 | 44 +++++++++--------- NAMESPACE | 1 NEWS.md | 5 ++ R/datastep.R | 71 ++++++++++++++++++++++++++---- R/libname.R | 75 ++++++++++++++++++++------------ R/utilities.R | 12 ++++- build/vignette.rds |binary inst/doc/libr-basics.html | 2 inst/doc/libr-datastep.html | 2 inst/doc/libr-example1.html | 8 +-- inst/doc/libr-example2.html | 4 - inst/doc/libr-faq.html | 2 inst/doc/libr-management.html | 2 inst/doc/libr.html | 4 - man/datastep.Rd | 37 ++++++++++++++- man/lib_export.Rd | 2 man/libname.Rd | 11 +++- man/libr.Rd | 10 ++++ tests/testthat/data/demo_studya.parquet |only tests/testthat/data/demo_studyb.parquet |only tests/testthat/test-datastep.R | 61 ++++++++++++++++++++++++++ tests/testthat/test-libname.R | 26 +++++++++++ tests/testthat/test-manipulation.R | 20 ++++++++ 24 files changed, 334 insertions(+), 84 deletions(-)
Title: Automated Construction of R Data Packages from REDCap Projects
Description: Export all data, including metadata, from a REDCap (Research
Electronic Data Capture) Project via the REDCap API
<https://projectredcap.org/wp-content/resources/REDCapTechnicalOverview.pdf>.
The exported (meta)data will be processed and formatted into a stand alone R
data package which can be installed and shared between researchers. Several
default reports are generated as vignettes in the resulting package.
Author: Peter DeWitt [aut, cre]
Maintainer: Peter DeWitt <peter.dewitt@cuanschutz.edu>
Diff between REDCapExporter versions 0.3.0 dated 2024-09-20 and 0.3.1 dated 2024-11-06
REDCapExporter-0.3.0/REDCapExporter/tests/testthat |only REDCapExporter-0.3.1/REDCapExporter/DESCRIPTION | 6 - REDCapExporter-0.3.1/REDCapExporter/MD5 | 9 +- REDCapExporter-0.3.1/REDCapExporter/NEWS.md | 6 + REDCapExporter-0.3.1/REDCapExporter/R/as.R | 36 ++++++---- REDCapExporter-0.3.1/REDCapExporter/inst/doc/redcap2package.html | 20 ++--- 6 files changed, 46 insertions(+), 31 deletions(-)
More information about REDCapExporter at CRAN
Permanent link
Title: Environmental Interpolation using Spatial Kernel Density
Estimation
Description: Estimates an ecological niche using occurrence data, covariates, and kernel
density-based estimation methods. For a single species with presence and absence data,
the 'envi' package uses the spatial relative risk function that is estimated using the
'sparr' package. Details about the 'sparr' package methods can be found in the tutorial:
Davies et al. (2018) <doi:10.1002/sim.7577>. Details about kernel density estimation can
be found in J. F. Bithell (1990) <doi:10.1002/sim.4780090616>. More information about
relative risk functions using kernel density estimation can be found in J. F. Bithell
(1991) <doi:10.1002/sim.4780101112>.
Author: Ian D. Buller [aut, cre, cph] ,
Lance A. Waller [ctb, ths] ,
Emory University [cph]
Maintainer: Ian D. Buller <ian.buller@alumni.emory.edu>
Diff between envi versions 0.1.19 dated 2024-01-23 and 1.0.0 dated 2024-11-06
envi-0.1.19/envi/R/package.R |only envi-1.0.0/envi/DESCRIPTION | 10 - envi-1.0.0/envi/MD5 | 36 ++-- envi-1.0.0/envi/NEWS.md | 7 envi-1.0.0/envi/R/envi-package.R |only envi-1.0.0/envi/R/globals.R | 2 envi-1.0.0/envi/R/lrren.R | 9 - envi-1.0.0/envi/R/perlrren.R | 2 envi-1.0.0/envi/R/utils.R | 2 envi-1.0.0/envi/README.md | 220 +++++++++++++------------ envi-1.0.0/envi/build/partial.rdb |binary envi-1.0.0/envi/build/vignette.rds |binary envi-1.0.0/envi/inst/CITATION | 53 ++++-- envi-1.0.0/envi/man/envi-package.Rd | 16 + envi-1.0.0/envi/man/lrren.Rd | 2 envi-1.0.0/envi/man/perlrren.Rd | 2 envi-1.0.0/envi/tests/testthat.R | 1 envi-1.0.0/envi/tests/testthat/test-perlrren.R | 4 envi-1.0.0/envi/tests/testthat/test-plot_cv.R | 2 envi-1.0.0/envi/tests/testthat/test-plot_obs.R | 2 20 files changed, 213 insertions(+), 157 deletions(-)
Title: Interactive Weibull Probability Plots
Description: Build interactive Weibull Probability
Plots with 'WeibullR' by David Silkworth and Jurgen Symynck (2022)
<https://CRAN.R-project.org/package=WeibullR>, an R package for
Weibull analysis, and 'plotly' by Carson Sievert (2020) <https://plotly-r.com>,
an interactive web-based graphing library.
Author: Paul Govan [aut, cre, cph]
Maintainer: Paul Govan <paul.govan2@gmail.com>
Diff between WeibullR.plotly versions 0.2.1 dated 2024-07-08 and 0.3 dated 2024-11-06
DESCRIPTION | 16 - MD5 | 31 ++- NAMESPACE | 3 NEWS.md | 5 R/plotly_contour.R | 97 +++++----- R/plotly_duane.R |only R/plotly_rga.R |only R/plotly_wblr.R | 399 +++++++++++++++++++++----------------------- README.md | 23 +- inst/CITATION | 2 inst/WORDLIST |only inst/paper |only man/plotly_contour.Rd | 14 - man/plotly_duane.Rd |only man/plotly_rga.Rd |only man/plotly_wblr.Rd | 26 +- tests/spelling.R |only tests/testthat/test-duane.R |only tests/testthat/test-rga.R |only tests/testthat/test-wblr.R | 4 20 files changed, 320 insertions(+), 300 deletions(-)
More information about WeibullR.plotly at CRAN
Permanent link
Title: Estimation of the Structural Topic and Sentiment-Discourse Model
for Text Analysis
Description: The Structural Topic and Sentiment-Discourse (STS) model allows researchers to estimate topic models with document-level metadata that determines both topic prevalence and sentiment-discourse. The sentiment-discourse is modeled as a document-level latent variable for each topic that modulates the word frequency within a topic. These latent topic sentiment-discourse variables are controlled by the document-level metadata. The STS model can be useful for regression analysis with text data in addition to topic modeling’s traditional use of descriptive analysis. The method was developed in Chen and Mankad (2024) <doi:10.1287/mnsc.2022.00261>.
Author: Shawn Mankad [aut, cre],
Li Chen [aut]
Maintainer: Shawn Mankad <smankad@ncsu.edu>
Diff between sts versions 1.0 dated 2024-09-17 and 1.1 dated 2024-11-06
sts-1.0/sts/R/estimateRegnTables.R |only sts-1.0/sts/R/exclusivitySTS.R |only sts-1.0/sts/R/print.RegnTables.R |only sts-1.0/sts/R/print.topWords.R |only sts-1.0/sts/R/semanticCoherenceSTS.R |only sts-1.0/sts/man/estimateRegnTables.Rd |only sts-1.0/sts/man/exclusivitySTS.Rd |only sts-1.0/sts/man/semanticCoherenceSTS.Rd |only sts-1.1/sts/DESCRIPTION | 12 - sts-1.1/sts/MD5 | 57 ++++---- sts-1.1/sts/NAMESPACE | 17 ++ sts-1.1/sts/R/esthcpp.R | 7 - sts-1.1/sts/R/estimateRegns.R |only sts-1.1/sts/R/findRepresentativeDocs.R |only sts-1.1/sts/R/heldoutLikelihood.R | 15 -- sts-1.1/sts/R/lgaecpp.R | 7 - sts-1.1/sts/R/lpbdcpp.R | 7 - sts-1.1/sts/R/opt.kappa.R | 210 +++++++----------------------- sts-1.1/sts/R/plot.STS.R |only sts-1.1/sts/R/plotRepresentativeDocs.R |only sts-1.1/sts/R/printRegnTables.R |only sts-1.1/sts/R/printTopWords.R |only sts-1.1/sts/R/sts-package.R | 8 - sts-1.1/sts/R/sts.R | 72 +++++----- sts-1.1/sts/R/summary.STS.R |only sts-1.1/sts/R/topicExclusivity.R |only sts-1.1/sts/R/topicSemanticCoherence.R |only sts-1.1/sts/man/esthcpp.Rd | 7 - sts-1.1/sts/man/estimateRegns.Rd |only sts-1.1/sts/man/findRepresentativeDocs.Rd |only sts-1.1/sts/man/heldoutLikelihood.Rd | 15 -- sts-1.1/sts/man/lgaecpp.Rd | 7 - sts-1.1/sts/man/lpbdcpp.Rd | 7 - sts-1.1/sts/man/plot.STS.Rd |only sts-1.1/sts/man/plotRepresentativeDocs.Rd |only sts-1.1/sts/man/printRegnTables.Rd | 17 +- sts-1.1/sts/man/printTopWords.Rd |only sts-1.1/sts/man/sts-package.Rd | 8 - sts-1.1/sts/man/sts.Rd | 44 +++--- sts-1.1/sts/man/summary.STS.Rd |only sts-1.1/sts/man/topicExclusivity.Rd |only sts-1.1/sts/man/topicSemanticCoherence.Rd |only 42 files changed, 216 insertions(+), 301 deletions(-)
Title: Rapid Parallel and Distributed Computing
Description: Parallel computing with a network of local and remote
workers. Fast exchange of results between the workers through a
'Redis' database. Key features include task queues, local caching, and
sophisticated error handling.
Author: Marc Becker [cre, aut, cph]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between rush versions 0.1.1 dated 2024-07-05 and 0.1.2 dated 2024-11-06
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 4 ++++ R/Rush.R | 10 +++++++++- man/Rush.Rd | 13 +++++++++++++ man/RushWorker.Rd | 1 + tests/testthat/test-Rush.R | 21 +++++++++++++++++++++ tests/testthat/test-worker_loops.R | 1 + 8 files changed, 60 insertions(+), 12 deletions(-)
Title: Graph Community Detection Methods into Systematic Conservation
Planning
Description: An innovative tool-set that incorporates graph community detection
methods into systematic conservation planning. It is designed to
enhance spatial prioritization by focusing on the protection of
areas with high ecological connectivity. Unlike traditional
approaches that prioritize individual planning units, 'priorCON'
focuses on clusters of features that exhibit strong ecological
linkages. The 'priorCON' package is built upon the 'prioritizr'
package <doi:10.32614/CRAN.package.prioritizr>, using commercial
and open-source exact algorithm solvers that ensure optimal
solutions to prioritization problems.
Author: Christos Adam [aut, cre],
Aggeliki Doxa [aut] ,
Nikolaos Nagkoulis [aut]
Maintainer: Christos Adam <econp266@econ.soc.uoc.gr>
Diff between priorCON versions 0.1.1 dated 2024-09-07 and 0.1.2 dated 2024-11-06
DESCRIPTION | 25 ++++++++++++++++--------- MD5 | 16 ++++++++-------- NEWS.md | 11 +++++++++++ R/functions_connect.R | 8 ++++---- README.md | 24 ++++++++++++++++-------- inst/doc/Introduction.Rmd | 6 +++++- inst/doc/Introduction.html | 12 +++++++----- man/get_metrics.Rd | 5 ++--- vignettes/Introduction.Rmd | 6 +++++- 9 files changed, 74 insertions(+), 39 deletions(-)
Title: 3D Prioritization Algorithm
Description: Three-dimensional systematic conservation planning, conducting
nested prioritization analyses across multiple depth levels and
ensuring efficient resource allocation throughout the water column.
It provides a structured workflow designed to address biodiversity
conservation and management challenges in the 3 dimensions, while
facilitating users’ choices and parameterization (Doxa et al. 2024
<doi:10.1016/j.ecolmodel.2024.110919>).
Author: Aggeliki Doxa [aut] ,
Christos Adam [aut, cre],
Nikolaos Nagkoulis [aut] ,
D. Antonios Mazaris [aut] ,
Stelios Katsanevakis [aut]
Maintainer: Christos Adam <econp266@econ.soc.uoc.gr>
Diff between prior3D versions 0.1.1 dated 2024-09-26 and 0.1.2 dated 2024-11-06
DESCRIPTION | 43 +++++++++------- MD5 | 19 +++---- NEWS.md | 15 +++++ R/rfunctions.R | 89 ++++++++++++++++++++++++--------- README.md | 118 ++++++++++++++++++++++++++++++--------------- inst/CITATION |only inst/doc/Introduction.Rmd | 89 +++++++++++++++++++++++++-------- inst/doc/Introduction.html | 93 ++++++++++++++++++++++++----------- man/Compare_2D_3D.Rd | 22 ++++---- man/prioritize_3D.Rd | 2 vignettes/Introduction.Rmd | 89 +++++++++++++++++++++++++-------- 11 files changed, 408 insertions(+), 171 deletions(-)
Title: Linear Group Fixed Effects
Description: Transforms away factors with many levels prior to doing an OLS.
Useful for estimating linear models with multiple group fixed effects, and for
estimating linear models which uses factors with many levels as pure control variables. See Gaure (2013) <doi:10.1016/j.csda.2013.03.024>
Includes support for instrumental variables, conditional F statistics for weak instruments,
robust and multi-way clustered standard errors, as well as limited mobility bias correction (Gaure 2014 <doi:10.1002/sta4.68>).
Since version 3.0, it provides dedicated functions to estimate Poisson models.
Author: Simen Gaure [aut] ,
Grant McDermott [ctb],
Mauricio Vargas Sepulveda [ctb, cre]
,
Karl Dunkle Werner [ctb],
Matthieu Stigler [ctb] ,
Daniel Luedecke [ctb]
Maintainer: Mauricio Vargas Sepulveda <m.sepulveda@mail.utoronto.ca>
Diff between lfe versions 3.0-0 dated 2024-02-29 and 3.1.0 dated 2024-11-06
DESCRIPTION | 8 +++---- MD5 | 31 ++++++++++++++-------------- NEWS.md |only R/condfstat.R | 5 +--- R/felm.R | 2 - R/lfe-package.R | 3 -- build/partial.rdb |binary build/vignette.rds |binary inst/doc/biascorrection.pdf |binary inst/doc/identification.pdf |binary inst/doc/lfehow.pdf |binary inst/doc/speed.pdf |binary man/condfstat.Rd | 5 +--- man/felm.Rd | 2 - man/lfe-package.Rd | 3 -- src/factor.c | 48 ++++++++++++++++++++++---------------------- src/utils.c | 26 +++++++++++++---------- 17 files changed, 68 insertions(+), 65 deletions(-)
Title: Polyhedra Database
Description: A polyhedra database scraped from various sources as R6 objects and 'rgl' visualizing capabilities.
Author: Alejandro Baranek [aut, com, cre, cph],
Leonardo Belen [aut, com, cph],
qbotics [cph],
Barret Schloerke [rev],
Lijia Yu [rev]
Maintainer: Alejandro Baranek <abaranek@dc.uba.ar>
Diff between Rpolyhedra versions 0.5.5 dated 2024-10-30 and 0.5.6 dated 2024-11-06
DESCRIPTION | 10 MD5 | 277 +++++++++++------------ NAMESPACE | 2 NEWS.md | 5 R/db-lib.R | 23 + R/env-lib.R | 14 + R/package-lib.R | 2 R/polyhedra-lib.R | 10 inst/doc/Rpolyhedra.html | 10 inst/extdata/polyhedra.RDS |binary inst/extdata/polyhedra/dmccooey/1b53af19.RDS.zip |binary inst/extdata/polyhedra/dmccooey/2d13193a.RDS.zip |binary inst/extdata/polyhedra/dmccooey/75a525aa.RDS.zip |binary inst/extdata/polyhedra/dmccooey/98d9147f.RDS.zip |binary inst/extdata/polyhedra/dmccooey/9cfe921d.RDS.zip |binary inst/extdata/polyhedra/dmccooey/b844f693.RDS.zip |binary inst/extdata/polyhedra/dmccooey/c26dab1e.RDS.zip |binary inst/extdata/polyhedra/dmccooey/c2ed6fc0.RDS.zip |binary inst/extdata/polyhedra/dmccooey/cecb7eda.RDS.zip |binary inst/extdata/polyhedra/netlib/011e6aa5.RDS.zip |binary inst/extdata/polyhedra/netlib/013c8d56.RDS.zip |binary inst/extdata/polyhedra/netlib/018facb1.RDS.zip |binary inst/extdata/polyhedra/netlib/02bf6e28.RDS.zip |binary 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Title: Univariate and Multivariate Tests for Multimodal and Other
Networks
Description: A set of tools for testing networks.
It includes functions for univariate and multivariate
conditional uniform graph and quadratic assignment procedure testing,
and network regression.
The package is a complement to
'Multimodal Political Networks' (2021, ISBN:9781108985000),
and includes various datasets used in the book.
Built on the 'manynet' package, all functions operate with matrices, edge lists,
and 'igraph', 'network', and 'tidygraph' objects,
and on one-mode and two-mode (bipartite) networks.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb] ,
Jael Tan [ctb] ,
Bernhard Bieri [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between migraph versions 1.4.2 dated 2024-09-04 and 1.4.3 dated 2024-11-06
migraph-1.4.2/migraph/data/mpn_DemSxP.rda |only migraph-1.4.2/migraph/data/mpn_OverSxP.rda |only migraph-1.4.2/migraph/data/mpn_RepSxP.rda |only migraph-1.4.3/migraph/DESCRIPTION | 10 migraph-1.4.3/migraph/MD5 | 52 - migraph-1.4.3/migraph/NAMESPACE | 2 migraph-1.4.3/migraph/NEWS.md | 31 migraph-1.4.3/migraph/R/data_mpn.R | 18 migraph-1.4.3/migraph/R/model_tests.R | 44 + migraph-1.4.3/migraph/build/partial.rdb |binary migraph-1.4.3/migraph/data/mpn_bristol.rda |binary migraph-1.4.3/migraph/data/mpn_cow_igo.rda |binary migraph-1.4.3/migraph/data/mpn_cow_trade.rda |binary migraph-1.4.3/migraph/data/mpn_elite_mex.rda |binary migraph-1.4.3/migraph/data/mpn_elite_usa_advice.rda |binary migraph-1.4.3/migraph/data/mpn_elite_usa_money.rda |binary migraph-1.4.3/migraph/data/mpn_ryanair.rda |binary migraph-1.4.3/migraph/data/mpn_senate_dem.rda |only migraph-1.4.3/migraph/data/mpn_senate_over.rda |only migraph-1.4.3/migraph/data/mpn_senate_rep.rda |only migraph-1.4.3/migraph/inst/tutorials/tutorial8/diversity.Rmd | 88 +- migraph-1.4.3/migraph/inst/tutorials/tutorial8/diversity.html | 338 ++++++---- migraph-1.4.3/migraph/man/mpn_bristol.Rd | 4 migraph-1.4.3/migraph/man/mpn_cow.Rd | 4 migraph-1.4.3/migraph/man/mpn_elite_mex.Rd | 4 migraph-1.4.3/migraph/man/mpn_elite_usa.Rd | 4 migraph-1.4.3/migraph/man/mpn_ryanair.Rd | 4 migraph-1.4.3/migraph/man/mpn_senate112.Rd | 18 migraph-1.4.3/migraph/man/tests.Rd | 10 migraph-1.4.3/migraph/tests/testthat/test-model_regression.R | 4 30 files changed, 423 insertions(+), 212 deletions(-)
Title: Accessing Statistics Canada Data Table and Vectors
Description: Searches for, accesses, and retrieves new-format and old-format Statistics Canada data
tables, as well as individual vectors, as tidy data frames. This package deals with encoding issues, allows for
bilingual English or French language data retrieval, and bundles convenience functions
to make it easier to work with retrieved table data. Optional caching features are provided.
Author: Jens von Bergmann [cre],
Dmitry Shkolnik [aut]
Maintainer: Jens von Bergmann <jens@mountainmath.ca>
Diff between cansim versions 0.3.16 dated 2024-03-12 and 0.3.17 dated 2024-11-06
cansim-0.3.16/cansim/man/get_cansim_ndm.Rd |only cansim-0.3.17/cansim/DESCRIPTION | 8 cansim-0.3.17/cansim/MD5 | 36 cansim-0.3.17/cansim/NAMESPACE | 1 cansim-0.3.17/cansim/NEWS.md | 10 cansim-0.3.17/cansim/R/cansim.R | 509 +++++----- cansim-0.3.17/cansim/R/cansim_helpers.R | 36 cansim-0.3.17/cansim/R/cansim_metadata.R |only cansim-0.3.17/cansim/R/cansim_sql.R | 80 + cansim-0.3.17/cansim/R/cansim_vectors.R | 119 ++ cansim-0.3.17/cansim/README.md | 31 cansim-0.3.17/cansim/build/vignette.rds |binary cansim-0.3.17/cansim/inst/doc/cansim.html | 70 - cansim-0.3.17/cansim/inst/doc/working_with_large_tables.html | 81 - cansim-0.3.17/cansim/man/get_cansim_cube_metadata.Rd | 8 cansim-0.3.17/cansim/man/get_cansim_data_for_table_coord_periods.Rd | 3 cansim-0.3.17/cansim/man/get_cansim_vector.Rd | 3 cansim-0.3.17/cansim/man/get_cansim_vector_for_latest_periods.Rd | 3 cansim-0.3.17/cansim/man/parse_metadata.Rd | 2 cansim-0.3.17/cansim/man/view_cansim_webpage.Rd | 6 20 files changed, 618 insertions(+), 388 deletions(-)
Title: Collection of Machine Learning Data Sets for 'mlr3'
Description: A small collection of interesting and educational machine
learning data sets which are used as examples in the 'mlr3' book
(<https://mlr3book.mlr-org.com>), the use case gallery
(<https://mlr3gallery.mlr-org.com>), or in other examples. All data
sets are properly preprocessed and ready to be analyzed by most
machine learning algorithms. Data sets are automatically added to the
dictionary of tasks if 'mlr3' is loaded.
Author: Michel Lang [ctb] ,
Marc Becker [cre, aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3data versions 0.7.0 dated 2023-06-29 and 0.8.0 dated 2024-11-06
mlr3data-0.7.0/mlr3data/R/ames_housing.R |only mlr3data-0.7.0/mlr3data/data/ames_housing.rda |only mlr3data-0.7.0/mlr3data/man/ames_housing.Rd |only mlr3data-0.8.0/mlr3data/DESCRIPTION | 18 +++++++++--------- mlr3data-0.8.0/mlr3data/MD5 | 17 +++++++---------- mlr3data-0.8.0/mlr3data/NEWS.md | 4 ++++ mlr3data-0.8.0/mlr3data/R/kc_housing.R | 2 +- mlr3data-0.8.0/mlr3data/R/zzz.R | 1 - mlr3data-0.8.0/mlr3data/build/partial.rdb |binary mlr3data-0.8.0/mlr3data/man/kc_housing.Rd | 2 +- mlr3data-0.8.0/mlr3data/man/mlr3data-package.Rd | 4 ++-- 11 files changed, 24 insertions(+), 24 deletions(-)
Title: Fit, Simulate and Diagnose Exponential-Family Models for
Networks
Description: An integrated set of tools to analyze and simulate networks based on exponential-family random graph models (ERGMs). 'ergm' is a part of the Statnet suite of packages for network analysis. See Hunter, Handcock, Butts, Goodreau, and Morris (2008) <doi:10.18637/jss.v024.i03> and Krivitsky, Hunter, Morris, and Klumb (2023) <doi:10.18637/jss.v105.i06>.
Author: Mark S. Handcock [aut],
David R. Hunter [aut],
Carter T. Butts [aut],
Steven M. Goodreau [aut],
Pavel N. Krivitsky [aut, cre] ,
Martina Morris [aut],
Li Wang [ctb],
Kirk Li [ctb],
Skye Bender-deMoll [ctb],
Chad Klumb [ctb],
Michal Bojanowski [ctb] ,
[...truncated...]
Maintainer: Pavel N. Krivitsky <pavel@statnet.org>
Diff between ergm versions 4.7.1 dated 2024-10-07 and 4.7.5 dated 2024-11-06
ergm-4.7.1/ergm/inst/doc/ergm.pdf |only ergm-4.7.1/ergm/man/control.ergm.godfather.Rd |only ergm-4.7.1/ergm/src/geodist.h |only ergm-4.7.5/ergm/DESCRIPTION | 8 ergm-4.7.5/ergm/MD5 | 170 +++---- ergm-4.7.5/ergm/NAMESPACE | 6 ergm-4.7.5/ergm/R/InitErgmTerm.R | 102 ---- ergm-4.7.5/ergm/R/InitErgmTerm.bipartite.R | 8 ergm-4.7.5/ergm/R/InitErgmTerm.dgw_sp.R | 111 ---- ergm-4.7.5/ergm/R/ergm-deprecated.R | 8 ergm-4.7.5/ergm/R/ergm-options.R | 4 ergm-4.7.5/ergm/R/ergm-package.R | 6 ergm-4.7.5/ergm/R/ergm.auxstorage.R | 21 ergm-4.7.5/ergm/R/ergm.geodistn.R | 9 ergm-4.7.5/ergm/R/ergm.pen.glm.R | 1 ergm-4.7.5/ergm/R/ergm_model.R | 61 +- ergm-4.7.5/ergm/R/ergm_proposal.R | 10 ergm-4.7.5/ergm/R/get.node.attr.R | 4 ergm-4.7.5/ergm/R/godfather.R | 134 ++++- ergm-4.7.5/ergm/R/is.dyad.independent.R | 6 ergm-4.7.5/ergm/R/nparam.R | 3 ergm-4.7.5/ergm/R/param_names.R | 2 ergm-4.7.5/ergm/R/simulate.ergm.R | 2 ergm-4.7.5/ergm/build/partial.rdb |binary ergm-4.7.5/ergm/build/stage23.rdb |binary ergm-4.7.5/ergm/build/vignette.rds |binary ergm-4.7.5/ergm/inst/CITATION | 4 ergm-4.7.5/ergm/inst/NEWS.Rd | 42 + ergm-4.7.5/ergm/inst/REFERENCES.bib | 240 +++++++--- ergm-4.7.5/ergm/inst/doc/Network-Callback-API.Rmd | 4 ergm-4.7.5/ergm/inst/doc/Network-Callback-API.html | 12 ergm-4.7.5/ergm/inst/doc/Proposal-Lookup-API.Rmd | 2 ergm-4.7.5/ergm/inst/doc/Proposal-Lookup-API.html | 2 ergm-4.7.5/ergm/inst/doc/Terms-API.Rmd | 18 ergm-4.7.5/ergm/inst/doc/Terms-API.html | 43 + ergm-4.7.5/ergm/inst/doc/ergm-term-crossRef.html | 29 - ergm-4.7.5/ergm/inst/doc/ergm.R | 27 - ergm-4.7.5/ergm/inst/doc/ergm.Rmd | 177 ++----- ergm-4.7.5/ergm/inst/doc/ergm.html |only ergm-4.7.5/ergm/inst/doc/nodal_attributes.html | 20 ergm-4.7.5/ergm/inst/include/ergm_MHproposal.h | 4 ergm-4.7.5/ergm/inst/include/ergm_Rutil.h | 3 ergm-4.7.5/ergm/inst/include/ergm_changestat.h | 2 ergm-4.7.5/ergm/inst/include/ergm_dyadgen.h | 4 ergm-4.7.5/ergm/inst/include/ergm_khash.h | 6 ergm-4.7.5/ergm/inst/include/ergm_kvec.h | 6 ergm-4.7.5/ergm/inst/include/ergm_model.h | 2 ergm-4.7.5/ergm/inst/include/ergm_stubs.c | 32 + ergm-4.7.5/ergm/inst/include/ergm_wtMHproposal.h | 6 ergm-4.7.5/ergm/inst/include/ergm_wtchangestat.h | 2 ergm-4.7.5/ergm/inst/include/ergm_wtmodel.h | 2 ergm-4.7.5/ergm/man/control.ergm.Rd | 14 ergm-4.7.5/ergm/man/control.ergm.bridge.Rd | 14 ergm-4.7.5/ergm/man/control.gof.Rd | 14 ergm-4.7.5/ergm/man/control.san.Rd | 14 ergm-4.7.5/ergm/man/control.simulate.ergm.Rd | 14 ergm-4.7.5/ergm/man/ergm-deprecated.Rd | 5 ergm-4.7.5/ergm/man/ergm-options.Rd | 4 ergm-4.7.5/ergm/man/ergm.godfather.Rd | 88 ++- ergm-4.7.5/ergm/man/ergmTerm.Rd | 6 ergm-4.7.5/ergm/man/ergm_model.Rd | 52 +- ergm-4.7.5/ergm/man/macros/ergmTerm.Rd |only ergm-4.7.5/ergm/man/mm-ergmTerm-0264ed3f.Rd | 20 ergm-4.7.5/ergm/man/nodal_attributes.Rd | 4 ergm-4.7.5/ergm/man/simulate.ergm.Rd | 2 ergm-4.7.5/ergm/src/MCMC.c.template.do_not_include_directly.h | 8 ergm-4.7.5/ergm/src/MHproposal.c | 12 ergm-4.7.5/ergm/src/MPLE.c | 18 ergm-4.7.5/ergm/src/MPLE.h | 1 ergm-4.7.5/ergm/src/SAN.c.template.do_not_include_directly.h | 8 ergm-4.7.5/ergm/src/allstatistics.c | 18 ergm-4.7.5/ergm/src/changestats.c | 10 ergm-4.7.5/ergm/src/ergm_dyadgen.c | 6 ergm-4.7.5/ergm/src/ergm_state.c | 21 ergm-4.7.5/ergm/src/ergm_type_defs_common.h | 3 ergm-4.7.5/ergm/src/ergm_wtstate.c | 21 ergm-4.7.5/ergm/src/ergm_wttype_defs_common.h | 3 ergm-4.7.5/ergm/src/geodist.c | 57 +- ergm-4.7.5/ergm/src/init.c | 58 +- ergm-4.7.5/ergm/src/model.c | 36 + ergm-4.7.5/ergm/src/wtMHproposal.c | 12 ergm-4.7.5/ergm/src/wtchangestats.c | 20 ergm-4.7.5/ergm/src/wtmodel.c | 35 + ergm-4.7.5/ergm/tests/testthat/test-geodistn.R |only ergm-4.7.5/ergm/tests/testthat/test-term-mm.R | 15 ergm-4.7.5/ergm/vignettes/Network-Callback-API.Rmd | 4 ergm-4.7.5/ergm/vignettes/Proposal-Lookup-API.Rmd | 2 ergm-4.7.5/ergm/vignettes/Terms-API.Rmd | 18 ergm-4.7.5/ergm/vignettes/ergm.Rmd | 177 ++----- 89 files changed, 1239 insertions(+), 940 deletions(-)
Title: Algebraic Tools for the Analysis of Multiple Social Networks
Description: Algebraic procedures for analyses of multiple social networks are delivered with this
package as described in Ostoic (2020) <DOI:10.18637/jss.v092.i11>. 'multiplex' makes
possible, among other things, to create and manipulate multiplex, multimode, and
multilevel network data with different formats. Effective ways are available to treat
multiple networks with routines that combine algebraic systems like the partially ordered
semigroup with decomposition procedures or semiring structures with the relational
bundles occurring in different types of multivariate networks. 'multiplex' provides also
an algebraic approach for affiliation networks through Galois derivations between families
of the pairs of subsets in the two domains of the network with visualization options.
Author: Antonio Rivero Ostoic [aut, cre]
Maintainer: Antonio Rivero Ostoic <multiplex@post.com>
Diff between multiplex versions 3.7 dated 2024-09-30 and 3.8-3 dated 2024-11-06
DESCRIPTION | 8 +- MD5 | 22 +++---- R/edgel.R | 13 ++++ R/transf.R | 122 ++++++++++++++++++++++++++++++++++++++++-- inst/CHANGELOG | 10 +++ inst/doc/TwoModeNetworks.R | 19 +++--- inst/doc/TwoModeNetworks.Rnw | 48 ++++++++-------- inst/doc/TwoModeNetworks.pdf |binary man/edgel.Rd | 5 + man/multiplex-package.Rd | 18 +++--- man/write.dat.Rd | 7 +- vignettes/TwoModeNetworks.Rnw | 48 ++++++++-------- 12 files changed, 233 insertions(+), 87 deletions(-)
Title: Standardized Accuracy and Other Model Performance Metrics
Description: Standardized accuracy (staccuracy) is framework for expressing accuracy scores such that 50% represents a reference level of performance and 100% is a perfect prediction. The 'staccuracy' package provides tools for creating staccuracy functions as well as some recommended staccuracy measures. It also provides functions for some classic performance metrics such as mean absolute error (MAE), root mean squared error (RMSE), and area under the receiver operating characteristic curve (AUCROC), as well as their winsorized versions when applicable.
Author: Chitu Okoli [aut, cre]
Maintainer: Chitu Okoli <Chitu.Okoli@skema.edu>
Diff between staccuracy versions 0.1.0 dated 2024-10-03 and 0.2.0 dated 2024-11-06
staccuracy-0.1.0/staccuracy/R/validation.R |only staccuracy-0.2.0/staccuracy/DESCRIPTION | 10 staccuracy-0.2.0/staccuracy/MD5 | 26 - staccuracy-0.2.0/staccuracy/NAMESPACE | 42 +- staccuracy-0.2.0/staccuracy/NEWS.md | 5 staccuracy-0.2.0/staccuracy/R/staccuracy-package.R | 49 +- staccuracy-0.2.0/staccuracy/R/staccuracy.R | 203 +++++++++- staccuracy-0.2.0/staccuracy/R/unpackaged_utils.R |only staccuracy-0.2.0/staccuracy/README.md | 29 - staccuracy-0.2.0/staccuracy/inst/WORDLIST | 5 staccuracy-0.2.0/staccuracy/man/sa_diff.Rd |only staccuracy-0.2.0/staccuracy/man/staccuracy-package.Rd | 1 staccuracy-0.2.0/staccuracy/man/staccuracy.Rd | 14 staccuracy-0.2.0/staccuracy/man/var_type.Rd |only staccuracy-0.2.0/staccuracy/tests/testthat/_snaps/staccuracy.md |only staccuracy-0.2.0/staccuracy/tests/testthat/test-regression.R | 146 +++---- staccuracy-0.2.0/staccuracy/tests/testthat/test-staccuracy.R |only 17 files changed, 364 insertions(+), 166 deletions(-)
Title: Percentile-Based Control Chart
Description: Design and implementation of Percentile-based Shewhart Control Charts for continuous data. Faraz (2019) <doi:10.1002/qre.2384>.
Author: Khan Zahid [aut],
Aamir Saghir [aut],
Zsolt T. Kosztyan [aut, cre]
Maintainer: Zsolt T. Kosztyan <kosztyan.zsolt@gtk.uni-pannon.hu>
Diff between pbcc versions 0.0.5 dated 2024-06-05 and 0.0.7 dated 2024-11-06
DESCRIPTION | 13 ++++++++----- MD5 | 10 ++++++---- NAMESPACE | 15 ++++++++------- R/odpbc_binom.R |only inst/NEWS | 9 +++++++++ man/odpbc.Rd | 2 +- man/odpbc_binom.Rd |only 7 files changed, 32 insertions(+), 17 deletions(-)
Title: Tools for Building OLS Regression Models
Description: Tools designed to make it easier for users, particularly beginner/intermediate R users
to build ordinary least squares regression models. Includes comprehensive regression output,
heteroskedasticity tests, collinearity diagnostics, residual diagnostics, measures of influence,
model fit assessment and variable selection procedures.
Author: Aravind Hebbali [aut, cre]
Maintainer: Aravind Hebbali <hebbali.aravind@gmail.com>
Diff between olsrr versions 0.6.0 dated 2024-02-12 and 0.6.1 dated 2024-11-06
DESCRIPTION | 8 +- MD5 | 64 ++++++++++----------- NAMESPACE | 4 - NEWS.md | 13 ++++ R/ols-all-possible-regression.R | 4 - R/ols-best-subsets-regression.R | 52 ++++++++--------- R/ols-observed-vs-predicted-plot.R | 7 +- R/ols-regress_compute.R | 4 - R/olsrr.R | 2 R/utils.R | 77 ++++++++++++++++++++++++++ README.md | 2 build/vignette.rds |binary inst/doc/heteroskedasticity.html | 4 - inst/doc/influence_measures.html | 24 ++++---- inst/doc/intro.html | 20 +++--- inst/doc/regression_diagnostics.html | 16 ++--- inst/doc/residual_diagnostics.html | 10 +-- inst/doc/variable_selection.html | 52 ++++++++--------- man/olsrr.Rd | 1 tests/testthat/_snaps/all-possible.md | 6 +- tests/testthat/_snaps/bp-output.md | 3 - tests/testthat/_snaps/regress-output.md | 4 - tests/testthat/_snaps/score-output.md | 3 - tests/testthat/_snaps/step-backward-output.md | 12 ++-- tests/testthat/_snaps/step-forward-output.md | 12 ++-- tests/testthat/_snaps/stepaic-b-output.md | 18 +++--- tests/testthat/_snaps/stepaic-f-output.md | 24 ++++---- tests/testthat/_snaps/stepwise-output.md | 6 +- tests/testthat/_snaps/visual/diag-5.svg | 31 ---------- tests/testthat/_snaps/visual/rpcplot-1.svg | 2 tests/testthat/_snaps/visual/rpcplot-2.svg | 2 tests/testthat/test-bp-output.R | 2 tests/testthat/test-score-output.R | 2 33 files changed, 273 insertions(+), 218 deletions(-)
Title: Diversity Indices for Numerical Matrices
Description: Provides methods to calculate diversity indices on numerical matrices
based on information theory, as described in Rocchini, Marcantonio and Ricotta (2017) <doi:10.1016/j.ecolind.2016.07.039>,
and Rocchini et al. (2021) <doi:10.1101/2021.01.23.427872>.
Author: Matteo Marcantonio [aut, cre],
Martina Iannacito [aut, ctb],
Elisa Marchetto [ctb],
Elisa Thouverai [aut, ctb],
Michele Torresani [aut, ctb],
Daniele Da Re [aut],
Clara Tattoni [aut],
Giovanni Bacaro [aut],
Saverio Vicario [aut, ctb],
Carlo Ricotta [ [...truncated...]
Maintainer: Matteo Marcantonio <marcantoniomatteo@gmail.com>
Diff between rasterdiv versions 0.3.5 dated 2024-10-14 and 0.3.6 dated 2024-11-06
rasterdiv-0.3.5/rasterdiv/TODO |only rasterdiv-0.3.6/rasterdiv/DESCRIPTION | 8 +- rasterdiv-0.3.6/rasterdiv/MD5 | 31 ++++------ rasterdiv-0.3.6/rasterdiv/NEWS.md | 10 +++ rasterdiv-0.3.6/rasterdiv/R/copNDVI.R | 9 +- rasterdiv-0.3.6/rasterdiv/R/load_copNDVI.R | 4 - rasterdiv-0.3.6/rasterdiv/R/paRao.R | 2 rasterdiv-0.3.6/rasterdiv/R/paRaoP.R | 4 - rasterdiv-0.3.6/rasterdiv/R/paRaoS.R | 6 - rasterdiv-0.3.6/rasterdiv/build/vignette.rds |binary rasterdiv-0.3.6/rasterdiv/inst/WORDLIST | 4 - rasterdiv-0.3.6/rasterdiv/inst/doc/rasterdiv_01_Basics.html | 4 - rasterdiv-0.3.6/rasterdiv/inst/doc/rasterdiv_02_Area_based_Rao.html | 4 - rasterdiv-0.3.6/rasterdiv/inst/doc/rasterdiv_03_Advanced_multidimension_Rao.html | 4 - rasterdiv-0.3.6/rasterdiv/man/copNDVI.Rd | 9 -- rasterdiv-0.3.6/rasterdiv/man/load_copNDVI.Rd | 3 rasterdiv-0.3.6/rasterdiv/man/paRao.Rd | 2 17 files changed, 54 insertions(+), 50 deletions(-)
Title: Tools for Plant Image Analysis
Description: Tools for both single and batch image manipulation and
analysis (Olivoto, 2022 <doi:10.1111/2041-210X.13803>) and
phytopathometry (Olivoto et al., 2022 <doi:10.1007/S40858-021-00487-5>).
The tools can be used for the quantification of leaf area, object
counting, extraction of image indexes, shape measurement, object
landmark identification, and Elliptical Fourier Analysis of object
outlines (Claude (2008) <doi:10.1007/978-0-387-77789-4>). The package
also provides a comprehensive pipeline for generating shapefiles with
complex layouts and supports high-throughput phenotyping of RGB,
multispectral, and hyperspectral orthomosaics. This functionality
facilitates field phenotyping using UAV- or satellite-based imagery.
Author: Tiago Olivoto [aut, cre]
Maintainer: Tiago Olivoto <tiagoolivoto@gmail.com>
Diff between pliman versions 2.1.0 dated 2023-10-14 and 3.0.0 dated 2024-11-06
pliman-2.1.0/pliman/inst/tmp_images/field_mosaic.jpg |only pliman-3.0.0/pliman/DESCRIPTION | 42 pliman-3.0.0/pliman/MD5 | 308 pliman-3.0.0/pliman/NAMESPACE | 604 - pliman-3.0.0/pliman/NEWS.md | 347 pliman-3.0.0/pliman/R/RcppExports.R | 12 pliman-3.0.0/pliman/R/analyze_objects.R | 3656 ++++---- pliman-3.0.0/pliman/R/analyze_objects_minimal.R |only pliman-3.0.0/pliman/R/apply_fun_to_imgs.R | 269 pliman-3.0.0/pliman/R/edge.R | 5 pliman-3.0.0/pliman/R/measure_disease.R | 2029 ++-- pliman-3.0.0/pliman/R/measure_disease_byl.R | 623 - pliman-3.0.0/pliman/R/measure_injury.R |only pliman-3.0.0/pliman/R/pliman-package.R | 18 pliman-3.0.0/pliman/R/sad.R | 284 pliman-3.0.0/pliman/R/utilities.R | 118 pliman-3.0.0/pliman/R/utils_efourier.R | 17 pliman-3.0.0/pliman/R/utils_file.R | 20 pliman-3.0.0/pliman/R/utils_imagem.R | 7662 +++++++++-------- pliman-3.0.0/pliman/R/utils_indexes.R |only pliman-3.0.0/pliman/R/utils_landmarks.R | 3 pliman-3.0.0/pliman/R/utils_mapedit.R | 1314 +- pliman-3.0.0/pliman/R/utils_mask.R | 10 pliman-3.0.0/pliman/R/utils_measures.R | 2200 ++-- pliman-3.0.0/pliman/R/utils_mosaic.R | 4389 ++++++++- pliman-3.0.0/pliman/R/utils_objects.R | 2188 ++-- pliman-3.0.0/pliman/R/utils_pick.R | 596 - pliman-3.0.0/pliman/R/utils_pipe.R | 112 pliman-3.0.0/pliman/R/utils_polygon.R | 2703 +++-- pliman-3.0.0/pliman/R/utils_segmentation.R | 29 pliman-3.0.0/pliman/R/utils_shapefile.R |only pliman-3.0.0/pliman/R/utils_shp.R | 3026 +++--- pliman-3.0.0/pliman/R/zzz.R | 263 pliman-3.0.0/pliman/build/partial.rdb |binary pliman-3.0.0/pliman/inst/CITATION | 24 pliman-3.0.0/pliman/inst/indexes.csv | 148 pliman-3.0.0/pliman/inst/tmp_images/lettuce.rds |only pliman-3.0.0/pliman/inst/tmp_images/lettuce.tif |only pliman-3.0.0/pliman/inst/tmp_images/mask.tif |only pliman-3.0.0/pliman/inst/tmp_images/soy_dsm.tif |only pliman-3.0.0/pliman/inst/tmp_images/soy_dtm.tif |only pliman-3.0.0/pliman/inst/tmp_images/soy_ortho.tif |only pliman-3.0.0/pliman/inst/tmp_images/soy_shape.rds |only pliman-3.0.0/pliman/man/analyze_objects.Rd | 1451 +-- pliman-3.0.0/pliman/man/analyze_objects_minimal.Rd |only pliman-3.0.0/pliman/man/analyze_objects_shp.Rd | 394 pliman-3.0.0/pliman/man/apply_fun_to_imgs.Rd | 138 pliman-3.0.0/pliman/man/as_image.Rd | 57 pliman-3.0.0/pliman/man/calibrate.Rd | 106 pliman-3.0.0/pliman/man/contours.Rd | 60 pliman-3.0.0/pliman/man/custom_palette.Rd | 72 pliman-3.0.0/pliman/man/dist_transform.Rd | 56 pliman-3.0.0/pliman/man/efourier.Rd | 160 pliman-3.0.0/pliman/man/efourier_coefs.Rd | 60 pliman-3.0.0/pliman/man/efourier_error.Rd | 138 pliman-3.0.0/pliman/man/efourier_inv.Rd | 84 pliman-3.0.0/pliman/man/efourier_norm.Rd | 116 pliman-3.0.0/pliman/man/efourier_power.Rd | 136 pliman-3.0.0/pliman/man/efourier_shape.Rd | 153 pliman-3.0.0/pliman/man/ellipse.Rd | 106 pliman-3.0.0/pliman/man/get_pliman_viewer.Rd | 28 pliman-3.0.0/pliman/man/ggplot_color.Rd | 40 pliman-3.0.0/pliman/man/image_align.Rd | 120 pliman-3.0.0/pliman/man/image_alpha.Rd |only pliman-3.0.0/pliman/man/image_augment.Rd | 104 pliman-3.0.0/pliman/man/image_binary.Rd | 282 pliman-3.0.0/pliman/man/image_combine.Rd | 94 pliman-3.0.0/pliman/man/image_create.Rd | 54 pliman-3.0.0/pliman/man/image_expand.Rd | 114 pliman-3.0.0/pliman/man/image_index.Rd | 321 pliman-3.0.0/pliman/man/image_prepare.Rd | 84 pliman-3.0.0/pliman/man/image_segment.Rd | 349 pliman-3.0.0/pliman/man/image_segment_kmeans.Rd | 137 pliman-3.0.0/pliman/man/image_segment_manual.Rd | 132 pliman-3.0.0/pliman/man/image_segment_mask.Rd | 126 pliman-3.0.0/pliman/man/image_shp.Rd | 142 pliman-3.0.0/pliman/man/image_square.Rd | 60 pliman-3.0.0/pliman/man/image_thinning_guo_hall.Rd | 114 pliman-3.0.0/pliman/man/image_to_mat.Rd | 80 pliman-3.0.0/pliman/man/image_view.Rd | 164 pliman-3.0.0/pliman/man/landmarks.Rd | 122 pliman-3.0.0/pliman/man/landmarks_add.Rd | 98 pliman-3.0.0/pliman/man/landmarks_angle.Rd | 70 pliman-3.0.0/pliman/man/landmarks_dist.Rd | 68 pliman-3.0.0/pliman/man/landmarks_regradi.Rd | 114 pliman-3.0.0/pliman/man/leading_zeros.Rd | 54 pliman-3.0.0/pliman/man/make_brush.Rd | 61 pliman-3.0.0/pliman/man/make_mask.Rd | 84 pliman-3.0.0/pliman/man/measure_disease.Rd | 689 - pliman-3.0.0/pliman/man/measure_disease_byl.Rd | 374 pliman-3.0.0/pliman/man/measure_disease_shp.Rd | 258 pliman-3.0.0/pliman/man/measure_injury.Rd |only pliman-3.0.0/pliman/man/mosaic_aggregate.Rd |only pliman-3.0.0/pliman/man/mosaic_analyze.Rd |only pliman-3.0.0/pliman/man/mosaic_analyze_iter.Rd |only pliman-3.0.0/pliman/man/mosaic_chm.Rd |only pliman-3.0.0/pliman/man/mosaic_chm_extract.Rd |only pliman-3.0.0/pliman/man/mosaic_chm_mask.Rd |only pliman-3.0.0/pliman/man/mosaic_crop.Rd | 156 pliman-3.0.0/pliman/man/mosaic_draw.Rd |only pliman-3.0.0/pliman/man/mosaic_epsg.Rd |only pliman-3.0.0/pliman/man/mosaic_extract.Rd |only pliman-3.0.0/pliman/man/mosaic_hist.Rd |only pliman-3.0.0/pliman/man/mosaic_index.Rd | 132 pliman-3.0.0/pliman/man/mosaic_index2.Rd |only pliman-3.0.0/pliman/man/mosaic_input.Rd | 135 pliman-3.0.0/pliman/man/mosaic_interpolate.Rd |only pliman-3.0.0/pliman/man/mosaic_lonlat2epsg.Rd |only pliman-3.0.0/pliman/man/mosaic_plot.Rd |only pliman-3.0.0/pliman/man/mosaic_plot_rgb.Rd |only pliman-3.0.0/pliman/man/mosaic_prepare.Rd | 172 pliman-3.0.0/pliman/man/mosaic_project.Rd |only pliman-3.0.0/pliman/man/mosaic_resample.Rd |only pliman-3.0.0/pliman/man/mosaic_segment.Rd |only pliman-3.0.0/pliman/man/mosaic_segment_pick.Rd |only pliman-3.0.0/pliman/man/mosaic_to_pliman.Rd | 112 pliman-3.0.0/pliman/man/mosaic_to_rgb.Rd | 97 pliman-3.0.0/pliman/man/mosaic_vectorize.Rd |only pliman-3.0.0/pliman/man/mosaic_view.Rd | 222 pliman-3.0.0/pliman/man/object_edge.Rd | 90 pliman-3.0.0/pliman/man/object_export.Rd | 324 pliman-3.0.0/pliman/man/object_export_shp.Rd | 204 pliman-3.0.0/pliman/man/object_label.Rd | 228 pliman-3.0.0/pliman/man/object_map.Rd | 104 pliman-3.0.0/pliman/man/object_mark.Rd | 62 pliman-3.0.0/pliman/man/object_rgb.Rd | 76 pliman-3.0.0/pliman/man/object_split.Rd | 254 pliman-3.0.0/pliman/man/object_split_shp.Rd | 132 pliman-3.0.0/pliman/man/object_to_color.Rd | 74 pliman-3.0.0/pliman/man/otsu.Rd | 62 pliman-3.0.0/pliman/man/palettes.Rd | 143 pliman-3.0.0/pliman/man/pipe.Rd | 78 pliman-3.0.0/pliman/man/pixel_index.Rd | 96 pliman-3.0.0/pliman/man/pliman_images.Rd | 108 pliman-3.0.0/pliman/man/pliman_indexes_ican_compute.Rd |only pliman-3.0.0/pliman/man/pliman_viewer.Rd | 20 pliman-3.0.0/pliman/man/plot.image_shp.Rd | 90 pliman-3.0.0/pliman/man/plot_id.Rd |only pliman-3.0.0/pliman/man/plot_index.Rd | 180 pliman-3.0.0/pliman/man/plot_index_shp.Rd | 201 pliman-3.0.0/pliman/man/plot_lw.Rd | 86 pliman-3.0.0/pliman/man/poly_apex_base_angle.Rd | 92 pliman-3.0.0/pliman/man/poly_pcv.Rd | 126 pliman-3.0.0/pliman/man/poly_width_at.Rd | 130 pliman-3.0.0/pliman/man/prepare_to_shp.Rd | 52 pliman-3.0.0/pliman/man/random_color.Rd | 50 pliman-3.0.0/pliman/man/sad.Rd | 158 pliman-3.0.0/pliman/man/sentinel_to_tif.Rd |only pliman-3.0.0/pliman/man/separate_col.Rd | 64 pliman-3.0.0/pliman/man/set_pliman_viewer.Rd | 28 pliman-3.0.0/pliman/man/shapefile_build.Rd |only pliman-3.0.0/pliman/man/shapefile_edit.Rd |only pliman-3.0.0/pliman/man/shapefile_interpolate.Rd |only pliman-3.0.0/pliman/man/shapefile_measures.Rd |only pliman-3.0.0/pliman/man/shapefile_plot.Rd |only pliman-3.0.0/pliman/man/shapefile_surface.Rd |only pliman-3.0.0/pliman/man/summary_index.Rd | 166 pliman-3.0.0/pliman/man/utils_colorspace.Rd | 115 pliman-3.0.0/pliman/man/utils_dpi.Rd | 238 pliman-3.0.0/pliman/man/utils_file.Rd | 226 pliman-3.0.0/pliman/man/utils_image.Rd | 212 pliman-3.0.0/pliman/man/utils_indexes.Rd |only pliman-3.0.0/pliman/man/utils_measures.Rd | 302 pliman-3.0.0/pliman/man/utils_objects.Rd | 335 pliman-3.0.0/pliman/man/utils_pca.Rd | 212 pliman-3.0.0/pliman/man/utils_pick.Rd | 284 pliman-3.0.0/pliman/man/utils_polygon.Rd | 651 - pliman-3.0.0/pliman/man/utils_polygon_plot.Rd | 194 pliman-3.0.0/pliman/man/utils_rows_cols.Rd | 98 pliman-3.0.0/pliman/man/utils_shapefile.Rd |only pliman-3.0.0/pliman/man/utils_shapes.Rd | 254 pliman-3.0.0/pliman/man/utils_stats.Rd | 70 pliman-3.0.0/pliman/man/utils_transform.Rd | 715 - pliman-3.0.0/pliman/man/utils_wd.Rd | 92 pliman-3.0.0/pliman/man/watershed2.Rd | 64 pliman-3.0.0/pliman/src/RcppExports.cpp | 44 pliman-3.0.0/pliman/src/code.cpp | 92 pliman-3.0.0/pliman/src/code_polygons.cpp | 44 178 files changed, 27240 insertions(+), 22349 deletions(-)
Title: Triangle Meshes and Related Geometry Tools
Description: Generate planar and spherical triangle meshes,
compute finite element calculations for 1- and 2-dimensional flat and curved
manifolds with associated basis function spaces, methods for lines and
polygons, and transparent handling of coordinate reference systems and
coordinate transformation, including 'sf' and 'sp' geometries. The core
'fmesher' library code was originally part of the 'INLA' package, and
implements parts of "Triangulations and Applications" by
Hjelle and Daehlen (2006) <doi:10.1007/3-540-33261-8>.
Author: Finn Lindgren [aut, cre, cph] ,
Seaton Andy [ctb] ,
Suen Man Ho [ctb] ,
Fabian E. Bachl [ctb]
Maintainer: Finn Lindgren <finn.lindgren@gmail.com>
Diff between fmesher versions 0.1.7 dated 2024-07-01 and 0.2.0 dated 2024-11-06
fmesher-0.1.7/fmesher/man/globeproj.Rd |only fmesher-0.1.7/fmesher/man/plot_PolySet.Rd |only fmesher-0.1.7/fmesher/man/plot_globeproj.Rd |only fmesher-0.2.0/fmesher/DESCRIPTION | 16 fmesher-0.2.0/fmesher/MD5 | 264 ++-- fmesher-0.2.0/fmesher/NAMESPACE | 26 fmesher-0.2.0/fmesher/NEWS.md | 41 fmesher-0.2.0/fmesher/R/RcppExports.R | 13 fmesher-0.2.0/fmesher/R/bary.R | 41 fmesher-0.2.0/fmesher/R/bbox.R | 10 fmesher-0.2.0/fmesher/R/crs.R | 525 +++++--- fmesher-0.2.0/fmesher/R/data-fmexample.R | 27 fmesher-0.2.0/fmesher/R/diameter.R | 2 fmesher-0.2.0/fmesher/R/evaluator.R | 463 ++++--- fmesher-0.2.0/fmesher/R/fem.R | 32 fmesher-0.2.0/fmesher/R/fmesher.R | 35 fmesher-0.2.0/fmesher/R/ggplot.R | 141 +- fmesher-0.2.0/fmesher/R/integration.R | 141 +- fmesher-0.2.0/fmesher/R/lattice_2d.R | 54 fmesher-0.2.0/fmesher/R/local.R | 35 fmesher-0.2.0/fmesher/R/manifold.R | 48 fmesher-0.2.0/fmesher/R/mapping.R | 962 ++++++---------- fmesher-0.2.0/fmesher/R/matern.R | 11 fmesher-0.2.0/fmesher/R/mesh.R | 29 fmesher-0.2.0/fmesher/R/mesh_1d.R | 27 fmesher-0.2.0/fmesher/R/mesh_2d.R | 33 fmesher-0.2.0/fmesher/R/nonconvex_hull.R | 50 fmesher-0.2.0/fmesher/R/plot.R | 18 fmesher-0.2.0/fmesher/R/print.R | 94 + fmesher-0.2.0/fmesher/R/segm.R | 17 fmesher-0.2.0/fmesher/R/sf_mesh.R | 126 +- fmesher-0.2.0/fmesher/R/sf_utils.R | 13 fmesher-0.2.0/fmesher/R/simplify.R | 34 fmesher-0.2.0/fmesher/R/sp_mesh.R | 24 fmesher-0.2.0/fmesher/R/split_lines.R | 7 fmesher-0.2.0/fmesher/R/tensor.R | 15 fmesher-0.2.0/fmesher/R/utils.R | 80 - fmesher-0.2.0/fmesher/README.md | 71 - fmesher-0.2.0/fmesher/build/partial.rdb |binary fmesher-0.2.0/fmesher/build/vignette.rds |binary fmesher-0.2.0/fmesher/data/fmexample.rda |binary fmesher-0.2.0/fmesher/inst/doc/articles.R |only fmesher-0.2.0/fmesher/inst/doc/articles.Rmd |only fmesher-0.2.0/fmesher/inst/doc/articles.html |only fmesher-0.2.0/fmesher/inst/doc/basic_use.R | 40 fmesher-0.2.0/fmesher/inst/doc/basic_use.Rmd | 42 fmesher-0.2.0/fmesher/inst/doc/basic_use.html | 216 ++- fmesher-0.2.0/fmesher/inst/doc/inla_conversion.R | 114 + fmesher-0.2.0/fmesher/inst/doc/inla_conversion.Rmd | 114 + fmesher-0.2.0/fmesher/inst/doc/inla_conversion.html | 2 fmesher-0.2.0/fmesher/man/call-stack.Rd | 9 fmesher-0.2.0/fmesher/man/fm_CRS_sp.Rd | 14 fmesher-0.2.0/fmesher/man/fm_CRSargs.Rd | 27 fmesher-0.2.0/fmesher/man/fm_as_sfc.Rd | 46 fmesher-0.2.0/fmesher/man/fm_bary.Rd | 30 fmesher-0.2.0/fmesher/man/fm_basis.Rd | 67 - fmesher-0.2.0/fmesher/man/fm_basis_helpers.Rd |only fmesher-0.2.0/fmesher/man/fm_bbox.Rd | 8 fmesher-0.2.0/fmesher/man/fm_block.Rd | 3 fmesher-0.2.0/fmesher/man/fm_contains.Rd | 22 fmesher-0.2.0/fmesher/man/fm_cprod.Rd | 16 fmesher-0.2.0/fmesher/man/fm_crs-set.Rd | 7 fmesher-0.2.0/fmesher/man/fm_crs.Rd | 23 fmesher-0.2.0/fmesher/man/fm_crs_is_identical.Rd | 8 fmesher-0.2.0/fmesher/man/fm_crs_is_null.Rd | 15 fmesher-0.2.0/fmesher/man/fm_crs_plot.Rd |only fmesher-0.2.0/fmesher/man/fm_crs_wkt.Rd | 9 fmesher-0.2.0/fmesher/man/fm_evaluate.Rd | 36 fmesher-0.2.0/fmesher/man/fm_evaluator_helpers.Rd | 13 fmesher-0.2.0/fmesher/man/fm_fem.Rd | 15 fmesher-0.2.0/fmesher/man/fm_gmrf.Rd | 11 fmesher-0.2.0/fmesher/man/fm_int.Rd | 14 fmesher-0.2.0/fmesher/man/fm_int_mesh_2d.Rd | 10 fmesher-0.2.0/fmesher/man/fm_lattice_2d.Rd | 22 fmesher-0.2.0/fmesher/man/fm_manifold.Rd | 31 fmesher-0.2.0/fmesher/man/fm_mesh_2d_map.Rd | 14 fmesher-0.2.0/fmesher/man/fm_nonconvex_hull.Rd | 16 fmesher-0.2.0/fmesher/man/fm_nonconvex_hull_inla.Rd | 3 fmesher-0.2.0/fmesher/man/fm_qinv.Rd |only fmesher-0.2.0/fmesher/man/fm_rcdt_2d.Rd | 5 fmesher-0.2.0/fmesher/man/fm_safe_sp.Rd | 10 fmesher-0.2.0/fmesher/man/fm_segm.Rd | 4 fmesher-0.2.0/fmesher/man/fm_segm_contour_helper.Rd | 22 fmesher-0.2.0/fmesher/man/fm_segm_list.Rd | 4 fmesher-0.2.0/fmesher/man/fm_simplify.Rd | 11 fmesher-0.2.0/fmesher/man/fm_simplify_helper.Rd | 7 fmesher-0.2.0/fmesher/man/fm_split_lines.Rd | 5 fmesher-0.2.0/fmesher/man/fm_tensor.Rd | 3 fmesher-0.2.0/fmesher/man/fm_transform.Rd | 6 fmesher-0.2.0/fmesher/man/fm_vertex_projection.Rd | 3 fmesher-0.2.0/fmesher/man/fmesher-deprecated.Rd | 45 fmesher-0.2.0/fmesher/man/fmesher-print.Rd | 3 fmesher-0.2.0/fmesher/man/fmesher_qinv.Rd |only fmesher-0.2.0/fmesher/man/fmexample.Rd | 8 fmesher-0.2.0/fmesher/man/fmexample_sp.Rd |only fmesher-0.2.0/fmesher/man/geom_fm.Rd | 41 fmesher-0.2.0/fmesher/man/print.fm_basis.Rd |only fmesher-0.2.0/fmesher/man/print.fm_evaluator.Rd |only fmesher-0.2.0/fmesher/man/wkt_tree.Rd | 3 fmesher-0.2.0/fmesher/src/RcppExports.cpp | 12 fmesher-0.2.0/fmesher/src/RcppFmesher.h | 8 fmesher-0.2.0/fmesher/src/Rcpp_interface.cc | 62 - fmesher-0.2.0/fmesher/src/basis.cc | 8 fmesher-0.2.0/fmesher/src/basis.h | 8 fmesher-0.2.0/fmesher/src/fmesher.h | 8 fmesher-0.2.0/fmesher/src/fmesher_debuglog.h | 8 fmesher-0.2.0/fmesher/src/fmesher_helpers.cc | 8 fmesher-0.2.0/fmesher/src/fmesher_helpers.h | 8 fmesher-0.2.0/fmesher/src/ioutils.cc | 7 fmesher-0.2.0/fmesher/src/ioutils.h | 8 fmesher-0.2.0/fmesher/src/ioutils_t.h | 8 fmesher-0.2.0/fmesher/src/locator.cc | 8 fmesher-0.2.0/fmesher/src/locator.h | 8 fmesher-0.2.0/fmesher/src/locator_t.h | 8 fmesher-0.2.0/fmesher/src/mesh.cc | 33 fmesher-0.2.0/fmesher/src/mesh.h | 9 fmesher-0.2.0/fmesher/src/meshc.cc | 8 fmesher-0.2.0/fmesher/src/meshc.h | 8 fmesher-0.2.0/fmesher/src/predicates.h | 7 fmesher-0.2.0/fmesher/src/qtool.h | 8 fmesher-0.2.0/fmesher/src/trees.cc | 8 fmesher-0.2.0/fmesher/src/trees.h | 8 fmesher-0.2.0/fmesher/src/trees_t.h | 8 fmesher-0.2.0/fmesher/src/vector.cc | 8 fmesher-0.2.0/fmesher/src/vector.h | 8 fmesher-0.2.0/fmesher/src/vector_t.h | 8 fmesher-0.2.0/fmesher/tests/testthat/setup.R | 9 fmesher-0.2.0/fmesher/tests/testthat/test-cprod.R | 5 fmesher-0.2.0/fmesher/tests/testthat/test-crs.R | 8 fmesher-0.2.0/fmesher/tests/testthat/test-integration.R | 115 + fmesher-0.2.0/fmesher/tests/testthat/test-matern.R | 12 fmesher-0.2.0/fmesher/tests/testthat/test-pixels.R | 3 fmesher-0.2.0/fmesher/tests/testthat/test-rcdt_2d.R | 18 fmesher-0.2.0/fmesher/tests/testthat/test-sf.R | 87 + fmesher-0.2.0/fmesher/tests/testthat/test-sp.R | 32 fmesher-0.2.0/fmesher/tests/testthat/test-transform.R | 12 fmesher-0.2.0/fmesher/tests/testthat/test-utils.R | 3 fmesher-0.2.0/fmesher/vignettes/articles.Rmd |only fmesher-0.2.0/fmesher/vignettes/basic_use.Rmd | 42 fmesher-0.2.0/fmesher/vignettes/inla_conversion.Rmd | 114 + 140 files changed, 3350 insertions(+), 2130 deletions(-)
Title: An Implementation of 'Salesforce' APIs Using Tidy Principles
Description: Functions connecting to the 'Salesforce' Platform APIs (REST, SOAP,
Bulk 1.0, Bulk 2.0, Metadata, Reports and Dashboards)
<https://trailhead.salesforce.com/content/learn/modules/api_basics/api_basics_overview>.
"API" is an acronym for "application programming interface". Most all calls
from these APIs are supported as they use CSV, XML or JSON data that can be
parsed into R data structures. For more details please see the 'Salesforce'
API documentation and this package's website
<https://stevenmmortimer.github.io/salesforcer/> for more information,
documentation, and examples.
Author: Steven M. Mortimer [aut, cre],
Takekatsu Hiramura [ctb],
Jennifer Bryan [ctb, cph],
Joanna Zhao [ctb, cph]
Maintainer: Steven M. Mortimer <mortimer.steven.m@gmail.com>
Diff between salesforcer versions 1.0.1 dated 2022-03-01 and 1.0.2 dated 2024-11-06
salesforcer-1.0.1/salesforcer/tests/testthat/salesforcer_test_settings.rds |only salesforcer-1.0.2/salesforcer/DESCRIPTION | 15 salesforcer-1.0.2/salesforcer/MD5 | 181 salesforcer-1.0.2/salesforcer/NEWS.md | 30 salesforcer-1.0.2/salesforcer/R/analytics-report.R | 2 salesforcer-1.0.2/salesforcer/R/attachments.R | 366 - salesforcer-1.0.2/salesforcer/R/auth.R | 22 salesforcer-1.0.2/salesforcer/R/bulk-operation.R | 656 +- salesforcer-1.0.2/salesforcer/R/bulk-query.R | 63 salesforcer-1.0.2/salesforcer/R/describe-metadata.R | 3 salesforcer-1.0.2/salesforcer/R/retrieve-metadata.R | 3 salesforcer-1.0.2/salesforcer/R/utils-control.R | 364 - salesforcer-1.0.2/salesforcer/R/utils-httr.R | 2 salesforcer-1.0.2/salesforcer/R/utils-metadata.R | 3076 +++++----- salesforcer-1.0.2/salesforcer/R/utils-query.R | 13 salesforcer-1.0.2/salesforcer/R/zzz.R | 12 salesforcer-1.0.2/salesforcer/README.md | 8 salesforcer-1.0.2/salesforcer/build/vignette.rds |binary salesforcer-1.0.2/salesforcer/inst/doc/getting-started.R | 4 salesforcer-1.0.2/salesforcer/inst/doc/getting-started.Rmd | 2 salesforcer-1.0.2/salesforcer/inst/doc/getting-started.html | 442 - salesforcer-1.0.2/salesforcer/inst/doc/passing-control-args.R | 4 salesforcer-1.0.2/salesforcer/inst/doc/passing-control-args.html | 409 - salesforcer-1.0.2/salesforcer/inst/doc/supported-queries.R | 2 salesforcer-1.0.2/salesforcer/inst/doc/supported-queries.Rmd | 2 salesforcer-1.0.2/salesforcer/inst/doc/supported-queries.html | 889 +- salesforcer-1.0.2/salesforcer/inst/doc/transitioning-from-RForcecom.R | 10 salesforcer-1.0.2/salesforcer/inst/doc/transitioning-from-RForcecom.html | 354 - salesforcer-1.0.2/salesforcer/inst/doc/working-with-attachments.R | 2 salesforcer-1.0.2/salesforcer/inst/doc/working-with-attachments.Rmd | 4 salesforcer-1.0.2/salesforcer/inst/doc/working-with-attachments.html | 570 + salesforcer-1.0.2/salesforcer/inst/doc/working-with-bulk-apis.R | 8 salesforcer-1.0.2/salesforcer/inst/doc/working-with-bulk-apis.Rmd | 2 salesforcer-1.0.2/salesforcer/inst/doc/working-with-bulk-apis.html | 425 - salesforcer-1.0.2/salesforcer/inst/doc/working-with-metadata.R | 2 salesforcer-1.0.2/salesforcer/inst/doc/working-with-metadata.html | 467 - salesforcer-1.0.2/salesforcer/inst/doc/working-with-reports.R | 2 salesforcer-1.0.2/salesforcer/inst/doc/working-with-reports.Rmd | 2 salesforcer-1.0.2/salesforcer/inst/doc/working-with-reports.html | 659 +- salesforcer-1.0.2/salesforcer/man/format_report_row.Rd | 9 salesforcer-1.0.2/salesforcer/man/parse_report_detail_rows.Rd | 9 salesforcer-1.0.2/salesforcer/man/sf_batch_status_bulk.Rd | 2 salesforcer-1.0.2/salesforcer/man/sf_control.Rd | 15 salesforcer-1.0.2/salesforcer/man/sf_convert_lead.Rd | 9 salesforcer-1.0.2/salesforcer/man/sf_copy_report.Rd | 2 salesforcer-1.0.2/salesforcer/man/sf_create.Rd | 9 salesforcer-1.0.2/salesforcer/man/sf_create_attachment.Rd | 16 salesforcer-1.0.2/salesforcer/man/sf_create_batches_bulk.Rd | 8 salesforcer-1.0.2/salesforcer/man/sf_create_report.Rd | 2 salesforcer-1.0.2/salesforcer/man/sf_delete.Rd | 9 salesforcer-1.0.2/salesforcer/man/sf_delete_report.Rd | 2 salesforcer-1.0.2/salesforcer/man/sf_download_attachment.Rd | 6 salesforcer-1.0.2/salesforcer/man/sf_execute_report.Rd | 11 salesforcer-1.0.2/salesforcer/man/sf_find_duplicates.Rd | 9 salesforcer-1.0.2/salesforcer/man/sf_find_duplicates_by_id.Rd | 9 salesforcer-1.0.2/salesforcer/man/sf_get_all_jobs_bulk.Rd | 2 salesforcer-1.0.2/salesforcer/man/sf_get_all_query_jobs_bulk.Rd | 2 salesforcer-1.0.2/salesforcer/man/sf_get_report_instance_results.Rd | 9 salesforcer-1.0.2/salesforcer/man/sf_job_batches_bulk.Rd | 2 salesforcer-1.0.2/salesforcer/man/sf_list_report_fields.Rd | 2 salesforcer-1.0.2/salesforcer/man/sf_list_report_filter_operators.Rd | 2 salesforcer-1.0.2/salesforcer/man/sf_list_report_types.Rd | 2 salesforcer-1.0.2/salesforcer/man/sf_list_reports.Rd | 2 salesforcer-1.0.2/salesforcer/man/sf_query.Rd | 9 salesforcer-1.0.2/salesforcer/man/sf_query_bulk_v1.Rd | 9 salesforcer-1.0.2/salesforcer/man/sf_query_bulk_v2.Rd | 9 salesforcer-1.0.2/salesforcer/man/sf_query_report.Rd | 2 salesforcer-1.0.2/salesforcer/man/sf_query_result_bulk.Rd | 9 salesforcer-1.0.2/salesforcer/man/sf_query_result_bulk_v1.Rd | 9 salesforcer-1.0.2/salesforcer/man/sf_query_result_bulk_v2.Rd | 9 salesforcer-1.0.2/salesforcer/man/sf_retrieve.Rd | 9 salesforcer-1.0.2/salesforcer/man/sf_run_bulk_operation.Rd | 15 salesforcer-1.0.2/salesforcer/man/sf_run_bulk_query.Rd | 9 salesforcer-1.0.2/salesforcer/man/sf_run_report.Rd | 11 salesforcer-1.0.2/salesforcer/man/sf_search.Rd | 9 salesforcer-1.0.2/salesforcer/man/sf_update.Rd | 9 salesforcer-1.0.2/salesforcer/man/sf_update_attachment.Rd | 4 salesforcer-1.0.2/salesforcer/man/sf_update_report.Rd | 2 salesforcer-1.0.2/salesforcer/man/sf_upsert.Rd | 9 salesforcer-1.0.2/salesforcer/man/valid_metadata_list.Rd | 2 salesforcer-1.0.2/salesforcer/tests/testthat/salesforcer_token.rds |binary salesforcer-1.0.2/salesforcer/tests/testthat/salesforcer_token.rds.gpg |binary salesforcer-1.0.2/salesforcer/tests/testthat/test-auth-basic.R | 2 salesforcer-1.0.2/salesforcer/tests/testthat/test-org-utils.R | 2 salesforcer-1.0.2/salesforcer/tests/testthat/test-report.R | 213 salesforcer-1.0.2/salesforcer/tests/testthat/test-rest.R | 96 salesforcer-1.0.2/salesforcer/vignettes/getting-started.Rmd | 2 salesforcer-1.0.2/salesforcer/vignettes/supported-queries.Rmd | 2 salesforcer-1.0.2/salesforcer/vignettes/supported-queries_files/figure-html/run-performance-test-1.png |binary salesforcer-1.0.2/salesforcer/vignettes/working-with-attachments.Rmd | 4 salesforcer-1.0.2/salesforcer/vignettes/working-with-bulk-apis.Rmd | 2 salesforcer-1.0.2/salesforcer/vignettes/working-with-reports.Rmd | 2 92 files changed, 5205 insertions(+), 4482 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-10-22 5.3.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-11-04 2.0.2
2024-10-21 2.0.0
Title: R Interface to 'Redatam' Library
Description: This package is deprecated. Please use 'redatamx' instead.
Provides an API to work with 'Redatam' (see <https://redatam.org>)
databases in both formats: 'RXDB' (new format) and 'DICX' (old format) and running
'Redatam' programs written in 'SPC' language. It's a wrapper around 'Redatam'
core and provides functions to open/close a database (redatam_open()/redatam_close()),
list entities and variables from the database (redatam_entities(), redatam_variables())
and execute a 'SPC' program and gets the results as data frames
(redatam_query(), redatam_run()).
Author: Jaime Salvador [aut, cre] ,
CELADE [cph]
Maintainer: Jaime Salvador <jaime.salvador@ideasybits.com>
Diff between minired versions 1.0.0 dated 2024-10-25 and 1.0.1 dated 2024-11-06
DESCRIPTION | 16 +-- MD5 | 18 ++-- NEWS.md | 7 + R/redatam-query.R | 204 ++++++++++++++++++++++++------------------------- R/zzz.R | 5 - configure | 13 ++- configure.win | 3 man/minired-package.Rd | 2 src/red_initialize.cpp | 68 ++++++++++------ src/redengine_c.h | 2 10 files changed, 191 insertions(+), 147 deletions(-)
Title: Use 'nlmixr2' to Interact with Open Source and Commercial
Software
Description: Run other estimation and simulation software via the 'nlmixr2' (Fidler et al (2019)
<doi:10.1002/psp4.12445>) interface including 'PKNCA', 'NONMEM' and 'Monolix'. While not required, you can
get/install the 'lixoftConnectors' package in the 'Monolix' installation, as
described at the following url
<https://monolixsuite.slp-software.com/r-functions/2024R1/installation-and-initialization>. When
'lixoftConnectors' is available, 'Monolix' can be run directly instead of setting up
command line usage.
Author: Matthew Fidler [aut, cre] ,
Bill Denney [aut] ,
Nook Fulloption [ctb]
Maintainer: Matthew Fidler <matthew.fidler@gmail.com>
Diff between babelmixr2 versions 0.1.4 dated 2024-09-23 and 0.1.5 dated 2024-11-06
babelmixr2-0.1.4/babelmixr2/build |only babelmixr2-0.1.4/babelmixr2/inst/doc |only babelmixr2-0.1.4/babelmixr2/vignettes |only babelmixr2-0.1.5/babelmixr2/DESCRIPTION | 18 babelmixr2-0.1.5/babelmixr2/MD5 | 74 +- babelmixr2-0.1.5/babelmixr2/NAMESPACE | 3 babelmixr2-0.1.5/babelmixr2/NEWS.md | 19 babelmixr2-0.1.5/babelmixr2/R/RcppExports.R | 4 babelmixr2-0.1.5/babelmixr2/R/poped.R | 150 ++++- babelmixr2-0.1.5/babelmixr2/README.md | 2 babelmixr2-0.1.5/babelmixr2/inst/poped/PopED_output_summary_D_cont_opt_1.txt |only babelmixr2-0.1.5/babelmixr2/inst/poped/ex.1.a.PK.1.comp.oral.md.intro.babelmixr2.R | 29 - babelmixr2-0.1.5/babelmixr2/inst/poped/ex.1.b.PK.1.comp.oral.md.re-parameterize.babelmixr2.R | 18 babelmixr2-0.1.5/babelmixr2/inst/poped/ex.1.c.PK.1.comp.oral.md.ODE.compiled.babelmixr2.R | 14 babelmixr2-0.1.5/babelmixr2/inst/poped/ex.10.PKPD.HCV.babelmixr2.R |only babelmixr2-0.1.5/babelmixr2/inst/poped/ex.11.PK.prior.babelmixr2.R |only babelmixr2-0.1.5/babelmixr2/inst/poped/ex.12.covariate.distributions.babelmixr2.R |only babelmixr2-0.1.5/babelmixr2/inst/poped/ex.13.shrinkage.babelmixr2.R |only babelmixr2-0.1.5/babelmixr2/inst/poped/ex.14.PK.IOV.babelmixr2.R |only babelmixr2-0.1.5/babelmixr2/inst/poped/ex.15.full.covariance.matrix.babelmixr2.R |only babelmixr2-0.1.5/babelmixr2/inst/poped/ex.2.b.warfarin.optimize.babelmixr2.R | 10 babelmixr2-0.1.5/babelmixr2/inst/poped/ex.2.c.warfarin.ODE.compiled.babelmixr2.R | 4 babelmixr2-0.1.5/babelmixr2/inst/poped/ex.2.d.warfarin.ED.babelmixr2.R | 11 babelmixr2-0.1.5/babelmixr2/inst/poped/ex.2.e.warfarin.Ds.babelmixr2.R | 7 babelmixr2-0.1.5/babelmixr2/inst/poped/ex.3.a.PKPD.1.comp.oral.md.imax.D-opt.babelmixr2.R | 6 babelmixr2-0.1.5/babelmixr2/inst/poped/ex.3.b.PKPD.1.comp.oral.md.imax.ED-opt.babelmixr2.R | 6 babelmixr2-0.1.5/babelmixr2/inst/poped/ex.4.PKPD.1.comp.emax.babelmixr2.R |only babelmixr2-0.1.5/babelmixr2/inst/poped/ex.5.PD.emax.hill.babelmixr2.R | 3 babelmixr2-0.1.5/babelmixr2/inst/poped/ex.6.PK.1.comp.oral.sd.babelmixr2.R |only babelmixr2-0.1.5/babelmixr2/inst/poped/ex.7.PK.1.comp.maturation.babelmixr2.R | 1 babelmixr2-0.1.5/babelmixr2/inst/poped/ex.8.tmdd_qss_one_target_compiled.babelmixr2.R | 54 + babelmixr2-0.1.5/babelmixr2/inst/poped/ex.9.PK.2.comp.oral.md.ode.compiled.babelmixr2.R | 4 babelmixr2-0.1.5/babelmixr2/man/babelBpopIdx.Rd |only babelmixr2-0.1.5/babelmixr2/man/dot-popedCluster.Rd |only babelmixr2-0.1.5/babelmixr2/man/dot-popedSetup.Rd | 4 babelmixr2-0.1.5/babelmixr2/src/RcppExports.cpp | 7 babelmixr2-0.1.5/babelmixr2/src/init.c | 4 babelmixr2-0.1.5/babelmixr2/src/poped.cpp | 30 - babelmixr2-0.1.5/babelmixr2/tests/testthat/_snaps |only babelmixr2-0.1.5/babelmixr2/tests/testthat/test-convert.R | 10 babelmixr2-0.1.5/babelmixr2/tests/testthat/test-poped.R | 271 +++++++++- 41 files changed, 627 insertions(+), 136 deletions(-)
Title: Generative Art with 'ggplot2'
Description: Provides algorithms for creating artworks in the 'ggplot2' language that incorporate some form of randomness.
Author: Koen Derks [aut, cre]
Maintainer: Koen Derks <koen-derks@hotmail.com>
Diff between aRtsy versions 0.2.4 dated 2023-08-21 and 1.0.0 dated 2024-11-06
DESCRIPTION | 10 +++++----- MD5 | 22 +++++++++++----------- NEWS.md | 5 +++++ R/canvas_flame.R | 4 ++-- R/canvas_mesh.R | 2 +- R/canvas_mosaic.R | 4 +++- README.md | 2 +- inst/CITATION | 7 ++++--- man/canvas_flame.Rd | 4 ++-- man/canvas_mesh.Rd | 2 +- man/figures/logo.png |binary src/canvas_flame.cpp | 2 +- 12 files changed, 36 insertions(+), 28 deletions(-)
Title: Interface for 'All of Us' Researcher Workbench
Description: Streamline use of the 'All of Us' Researcher Workbench (<https://www.researchallofus.org/data-tools/workbench/>)with tools to extract and manipulate data from the 'All of Us' database. Increase interoperability with the Observational Health Data Science and Informatics ('OHDSI') tool stack by decreasing reliance of 'All of Us' tools and allowing for cohort creation via 'Atlas'. Improve reproducible and transparent research using 'All of Us'.
Author: Louisa Smith [aut, cph] ,
Rob Cavanaugh [aut, cre, cph]
Maintainer: Rob Cavanaugh <r.cavanaugh@northeastern.edu>
Diff between allofus versions 1.1.0 dated 2024-04-04 and 1.2.0 dated 2024-11-06
DESCRIPTION | 8 - MD5 | 77 ++++++++-------- NAMESPACE | 1 NEWS.md | 17 +++ R/allofus-package.R | 1 R/aou_atlas_cohort.R | 25 ++++- R/aou_concept_set.R | 97 ++++++++++++++++---- R/aou_connect.R | 6 + R/aou_ls.R | 2 R/aou_survey.R | 32 ++++-- R/aou_temp_tables.R | 4 R/data.R | 14 ++ README.md | 79 ++++++++-------- build/vignette.rds |binary data/aou_concept_codes.rda |only inst/CITATION | 13 +- inst/doc/allofus.R | 11 ++ inst/doc/allofus.Rmd | 21 ++++ inst/doc/allofus.html | 128 +++++++++++++++------------ inst/doc/atlas.Rmd | 3 inst/doc/atlas.html | 6 + inst/doc/data.Rmd | 2 inst/doc/data.html | 2 inst/pkgdown.yml | 2 man/aou_atlas_cohort.Rd | 19 ++-- man/aou_bucket_to_workspace.Rd | 2 man/aou_collect.Rd | 4 man/aou_concept_codes.Rd |only man/aou_concept_set.Rd | 3 man/aou_connect.Rd | 3 man/aou_sql.Rd | 3 man/aou_survey.Rd | 2 tests/testthat/test-aou_concept_set.R | 6 - tests/testthat/test-aou_concept_set_combos.R |only tests/testthat/test-aou_connect.R | 2 tests/testthat/test-aou_ls.R | 5 - vignettes/allofus.Rmd | 21 ++++ vignettes/atlas.Rmd | 3 vignettes/data.Rmd | 2 vignettes/web_only/health_codebook.Rmd | 7 - vignettes/web_only/searchable_codebook.Rmd | 5 - 41 files changed, 437 insertions(+), 201 deletions(-)
Title: Quick and Essential 'R' Tricks for Better Scripts
Description: The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to improve your scripts. Improve the quality and reproducibility of 'R' scripts.
Author: Obinna Obianom [aut, cre],
Brice Richard [aut]
Maintainer: Obinna Obianom <idonshayo@gmail.com>
Diff between quickcode versions 1.0.1 dated 2024-10-11 and 1.0.2 dated 2024-11-06
quickcode-1.0.1/quickcode/R/0.7_equations2.R |only quickcode-1.0.2/quickcode/DESCRIPTION | 6 - quickcode-1.0.2/quickcode/MD5 | 36 +++--- quickcode-1.0.2/quickcode/NAMESPACE | 2 quickcode-1.0.2/quickcode/NEWS.md | 5 quickcode-1.0.2/quickcode/R/data_pop.R | 17 +++ quickcode-1.0.2/quickcode/R/data_shuffle.R | 28 +++++ quickcode-1.0.2/quickcode/R/math.R |only quickcode-1.0.2/quickcode/R/pairDist.R |only quickcode-1.0.2/quickcode/R/vector_pop.R | 9 + quickcode-1.0.2/quickcode/R/vector_shuffle.R | 14 +- quickcode-1.0.2/quickcode/inst/doc/add_today_date_to_filenames_quickcode.html | 54 +++++----- quickcode-1.0.2/quickcode/inst/doc/nullish_coalescing_operator_r.html | 4 quickcode-1.0.2/quickcode/inst/doc/quickcode_r_introduction.html | 4 quickcode-1.0.2/quickcode/inst/doc/track_function_usage_r.html | 4 quickcode-1.0.2/quickcode/man/data_pop.Rd | 6 + quickcode-1.0.2/quickcode/man/data_shuffle.Rd | 13 ++ quickcode-1.0.2/quickcode/man/machine_learning.Rd | 2 quickcode-1.0.2/quickcode/man/mathmisc.Rd |only quickcode-1.0.2/quickcode/man/vector_pop.Rd | 6 + quickcode-1.0.2/quickcode/man/vector_shuffle.Rd | 7 + 21 files changed, 157 insertions(+), 60 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-11-15 1.1
2015-11-18 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-03-25 0.2.2
2021-07-16 0.2.0
2021-01-19 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-10-06 1.2.7
2016-09-13 1.2.3.1
2016-09-11 1.2.3
2013-09-23 1.0.9
2013-09-03 1.0.8
2013-03-12 0.99.5
2013-03-11 0.99.2
Title: Parse 'YMD' Format Number or String to Date
Description: Convert 'YMD' format number or string to Date efficiently, using Rust's
standard library. It also provides helper functions to handle Date, e.g., quick
finding the beginning or end of the given period, adding months to Date, etc.
Author: Xianying Tan [aut, cre] ,
Hiroaki Yutani [ctb] ,
The authors of the dependency Rust crates [ctb]
Maintainer: Xianying Tan <shrektan@126.com>
Diff between ymd versions 0.1.2 dated 2024-08-23 and 0.1.3 dated 2024-11-06
DESCRIPTION | 6 +- LICENSE.note | 7 +++ MD5 | 18 ++++---- NEWS.md | 4 + inst/AUTHORS | 48 +++++++++++++---------- src/rust/Cargo.lock | 92 ++++++++++++++++++++++++--------------------- src/rust/Cargo.toml | 2 src/rust/src/rdate.rs | 8 ++- src/rust/vendor.tar.xz |binary tests/testthat/test-beop.R | 10 ++++ 10 files changed, 117 insertions(+), 78 deletions(-)