Title: Robust Inference for Covariate Adjustment in Randomized Clinical
Trials
Description: Performs robust estimation and inference when using covariate adjustment and/or covariate-adaptive randomization in randomized clinical trials.
Ting Ye, Jun Shao, Yanyao Yi, Qinyuan Zhao (2023) <doi:10.1080/01621459.2022.2049278>.
Ting Ye, Marlena Bannick, Yanyao Yi, Jun Shao (2023) <doi:10.1080/24754269.2023.2205802>.
Ting Ye, Jun Shao, Yanyao Yi (2023) <doi:10.1093/biomet/asad045>.
Marlena Bannick, Jun Shao, Jingyi Liu, Yu Du, Yanyao Yi, Ting Ye (2024) <doi:10.48550/arXiv.2306.10213>.
Author: Marlena Bannick [cre, aut] ,
Ting Ye [aut],
Yanyao Yi [aut],
Faith Bian [aut]
Maintainer: Marlena Bannick <mnorwood@uw.edu>
Diff between RobinCar versions 0.3.1 dated 2024-11-06 and 0.3.2 dated 2024-11-07
DESCRIPTION | 6 +++--- MD5 | 4 ++-- tests/testthat/test-factor-ordering.R | 33 ++++++++++++++++++++++++++++----- 3 files changed, 33 insertions(+), 10 deletions(-)
Title: Collection of Machine Learning Data Sets for 'mlr3'
Description: A small collection of interesting and educational machine
learning data sets which are used as examples in the 'mlr3' book
(<https://mlr3book.mlr-org.com>), the use case gallery
(<https://mlr3gallery.mlr-org.com>), or in other examples. All data
sets are properly preprocessed and ready to be analyzed by most
machine learning algorithms. Data sets are automatically added to the
dictionary of tasks if 'mlr3' is loaded.
Author: Michel Lang [ctb] ,
Marc Becker [cre, aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3data versions 0.8.0 dated 2024-11-06 and 0.9.0 dated 2024-11-07
DESCRIPTION | 6 +++--- MD5 | 9 ++++++--- NEWS.md | 6 +++++- R/ames_housing.R |only R/zzz.R | 1 + data/ames_housing.rda |only man/ames_housing.Rd |only 7 files changed, 15 insertions(+), 7 deletions(-)
Title: Fast Robust Moments
Description: Fast, numerically robust computation of weighted moments via 'Rcpp'.
Supports computation on vectors and matrices, and Monoidal append of moments.
Moments and cumulants over running fixed length windows can be computed,
as well as over time-based windows.
Moment computations are via a generalization of Welford's method, as described
by Bennett et. (2009) <doi:10.1109/CLUSTR.2009.5289161>.
Author: Steven E. Pav [aut, cre]
Maintainer: Steven E. Pav <shabbychef@gmail.com>
Diff between fromo versions 0.2.2 dated 2024-11-03 and 0.2.3 dated 2024-11-07
ChangeLog | 5 DESCRIPTION | 8 - MD5 | 40 ++--- R/RcppExports.R | 131 +++++++++--------- R/fromo.r | 6 inst/doc/fromo.pdf |binary man/NEWS.Rd | 8 + man/runningadjustments.Rd | 27 +++ man/runningmoments.Rd | 46 ++++-- man/runningquantiles.Rd | 18 ++ man/t_runningadjustments.Rd | 27 +++ man/t_runningmoments.Rd | 46 ++++-- man/t_runningquantiles.Rd | 18 ++ src/RcppExports.cpp | 288 ++++++++++++++++++++++------------------- src/running.cpp | 86 +++++++----- src/running.h | 80 ++++++++--- src/t_running.cpp | 86 +++++++----- src/t_running.h | 41 +++-- src/welford.h | 8 - tests/testthat/test-running.r | 83 ++++++++--- tests/testthat/test-trunning.r | 35 ++++ 21 files changed, 699 insertions(+), 388 deletions(-)
Title: Cell Ranger Output Filtering and Metrics Visualization
Description: Sample and cell filtering as well as visualisation of output metrics from 'Cell Ranger' by Grace X.Y. Zheng et al. (2017) <doi:10.1038/ncomms14049>. 'CRMetrics' allows for easy plotting of output metrics across multiple samples as well as comparative plots including statistical assessments of these. 'CRMetrics' allows for easy removal of ambient RNA using 'SoupX' by Matthew D Young and Sam Behjati (2020) <doi:10.1093/gigascience/giaa151> or 'CellBender' by Stephen J Fleming et al. (2022) <doi:10.1101/791699>. Furthermore, it is possible to preprocess data using 'Pagoda2' by Nikolas Barkas et al. (2021) <https://github.com/kharchenkolab/pagoda2> or 'Seurat' by Yuhan Hao et al. (2021) <doi:10.1016/j.cell.2021.04.048> followed by embedding of cells using 'Conos' by Nikolas Barkas et al. (2019) <doi:10.1038/s41592-019-0466-z>. Finally, doublets can be detected using 'scrublet' by Samuel L. Wolock et al. (2019) <doi:10.1016/j.cels.2018.11.005> or 'D [...truncated...]
Author: Rasmus Rydbirk [aut, cre],
Fabienne Kick [aut],
Henrietta Holze [aut],
Xian Xin [ctb]
Maintainer: Rasmus Rydbirk <rrydbirk@outlook.dk>
Diff between CRMetrics versions 0.3.0 dated 2023-09-01 and 0.3.2 dated 2024-11-07
DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- NEWS.md | 9 +++++++++ R/CRMetrics.R | 22 ++++++++++------------ R/inner_functions.R | 3 +-- 5 files changed, 30 insertions(+), 24 deletions(-)
Title: A Program for Missing Data
Description: A tool that "multiply imputes" missing data in a single cross-section
(such as a survey), from a time series (like variables collected for
each year in a country), or from a time-series-cross-sectional data
set (such as collected by years for each of several countries).
Amelia II implements our bootstrapping-based algorithm that gives
essentially the same answers as the standard IP or EMis approaches,
is usually considerably faster than existing approaches and can
handle many more variables. Unlike Amelia I and other statistically
rigorous imputation software, it virtually never crashes (but please
let us know if you find to the contrary!). The program also
generalizes existing approaches by allowing for trends in time series
across observations within a cross-sectional unit, as well as priors
that allow experts to incorporate beliefs they have about the values
of missing cells in their data. Amelia II also includes useful
diagnostics of the fit of multiple imputation models. The p [...truncated...]
Author: James Honaker [aut],
Gary King [aut],
Matthew Blackwell [aut, cre]
Maintainer: Matthew Blackwell <mblackwell@gmail.com>
Diff between Amelia versions 1.8.2 dated 2024-04-23 and 1.8.3 dated 2024-11-07
Amelia-1.8.2/Amelia/man/ameliagui.Rd |only Amelia-1.8.3/Amelia/DESCRIPTION | 14 +++++----- Amelia-1.8.3/Amelia/MD5 | 34 ++++++++++++------------- Amelia-1.8.3/Amelia/R/ameliagui.r | 12 -------- Amelia-1.8.3/Amelia/R/summary.mi.R | 11 ++++++++ Amelia-1.8.3/Amelia/R/write.amelia.R | 2 - Amelia-1.8.3/Amelia/build/partial.rdb |binary Amelia-1.8.3/Amelia/build/vignette.rds |binary Amelia-1.8.3/Amelia/inst/doc/ameliaview.html | 4 +- Amelia-1.8.3/Amelia/inst/doc/diagnostics.html | 12 ++++---- Amelia-1.8.3/Amelia/inst/doc/intro-mi.Rmd | 4 -- Amelia-1.8.3/Amelia/inst/doc/intro-mi.html | 24 +++++------------ Amelia-1.8.3/Amelia/inst/doc/using-amelia.Rmd | 2 - Amelia-1.8.3/Amelia/inst/doc/using-amelia.html | 17 +++++------- Amelia-1.8.3/Amelia/man/Amelia-package.Rd | 2 - Amelia-1.8.3/Amelia/man/summary.mi.Rd |only Amelia-1.8.3/Amelia/man/write.amelia.Rd | 2 - Amelia-1.8.3/Amelia/vignettes/intro-mi.Rmd | 4 -- Amelia-1.8.3/Amelia/vignettes/using-amelia.Rmd | 2 - 19 files changed, 65 insertions(+), 81 deletions(-)
Title: Stock Assessment Methods Toolkit
Description: Simulation tools for closed-loop simulation are provided for the 'MSEtool' operating model to inform data-rich fisheries.
'SAMtool' provides a conditioning model, assessment models of varying complexity with standardized reporting,
model-based management procedures, and diagnostic tools for evaluating assessments inside closed-loop simulation.
Author: Quang Huynh [aut, cre],
Tom Carruthers [aut],
Adrian Hordyk [aut]
Maintainer: Quang Huynh <quang@bluematterscience.com>
Diff between SAMtool versions 1.7.0 dated 2024-08-29 and 1.8.0 dated 2024-11-07
DESCRIPTION | 10 MD5 | 71 +-- NEWS.md | 14 R/RCM2.R |only R/RCM2MOM.R | 10 R/RCM_assess.R | 758 ++++++++++++++++++------------------- R/RCM_data.R | 50 ++ R/RCM_est.R | 118 +++-- R/RCM_int.R | 47 +- R/RCM_rmd.R | 179 +++++--- R/assess_SCA.R | 9 R/assess_SSS.R | 3 R/assess_shortcut.R | 6 R/define_S4_class_RCModel.R | 306 +++++++------- R/define_S4_class_assess_RCMdata.R | 10 R/define_S4_generic_RCM.R | 66 ++- R/define_S4_generic_posterior.R | 2 R/report_DD_TMB.R | 3 R/report_SCA.R | 6 R/report_SP.R | 3 R/report_cDD.R | 3 R/retrospective_AM.R | 8 R/z_MPs.R | 5 build/partial.rdb |binary data/pcod.rda |binary inst/include/RCM.hpp | 34 - inst/include/SCA.hpp | 30 + inst/include/functions.hpp | 6 man/RCM.Rd | 74 ++- man/RCMdata-class.Rd | 6 man/RCModel-class.Rd | 4 man/SCA.Rd | 4 man/SCA_CAL.Rd | 4 man/SCA_DDM.Rd | 4 man/SCA_RWM.Rd | 4 man/plot.RCModel.Rd | 6 man/retrospective_AM.Rd | 8 37 files changed, 1071 insertions(+), 800 deletions(-)
Title: Variational Inference for Hierarchical Generalized Linear Models
Description: Estimates hierarchical models using variational inference.
At present, it can estimate logistic, linear, and negative binomial models.
It can accommodate models with an arbitrary number of random effects and
requires no integration to estimate. It also provides the ability to improve
the quality of the approximation using marginal augmentation.
Goplerud (2022) <doi:10.1214/21-BA1266> and Goplerud (2024) <doi:10.1017/S0003055423000035>
provide details on the variational algorithms.
Author: Max Goplerud [aut, cre]
Maintainer: Max Goplerud <mgoplerud@austin.utexas.edu>
Diff between vglmer versions 1.0.5 dated 2024-09-12 and 1.0.6 dated 2024-11-07
.Rinstignore |only DESCRIPTION | 8 - MD5 | 31 +++-- NEWS.md | 10 + R/MAVB_functions.R | 4 R/control_functions.R |only R/predict_functions.R | 4 R/vglmer_regression.R | 181 ++--------------------------------- README.md | 2 man/MAVB.Rd | 2 man/reexports.Rd | 34 +++--- man/vglmer.Rd | 15 +- man/vglmer_control.Rd | 11 +- man/vglmer_predict.Rd | 4 tests/testthat/test-errors.R | 8 + tests/testthat/test-splines.R | 25 +++- tests/testthat/test-translation_px.R | 42 +++++++- tests/testthat/test-update_method.R | 83 +++++++++++++++- 18 files changed, 224 insertions(+), 240 deletions(-)
Title: Generalized Kernel Regularized Least Squares
Description: Kernel regularized least squares, also known as kernel ridge regression,
is a flexible machine learning method. This package implements this method by
providing a smooth term for use with 'mgcv' and uses random sketching to
facilitate scalable estimation on large datasets. It provides additional
functions for calculating marginal effects after estimation and for use with
ensembles ('SuperLearning'), double/debiased machine learning ('DoubleML'),
and robust/clustered standard errors ('sandwich'). Chang and Goplerud (2024)
<doi:10.1017/pan.2023.27> provide further details.
Author: Qing Chang [aut],
Max Goplerud [aut, cre]
Maintainer: Max Goplerud <mgoplerud@austin.utexas.edu>
Diff between gKRLS versions 1.0.3 dated 2024-09-04 and 1.0.4 dated 2024-11-07
DESCRIPTION | 10 +++++----- MD5 | 13 +++++++------ NEWS.md | 4 ++++ build/partial.rdb |binary man/mlr3_gKRLS.Rd | 2 ++ tests/testthat/test_aaa.R |only tests/testthat/test_basic_kernel.R | 11 +++++++++-- tests/testthat/test_se.R | 3 ++- 8 files changed, 29 insertions(+), 14 deletions(-)
Title: Black-Box Optimization Toolkit
Description: Features highly configurable search spaces via the 'paradox'
package and optimizes every user-defined objective function. The
package includes several optimization algorithms e.g. Random Search,
Iterated Racing, Bayesian Optimization (in 'mlr3mbo') and Hyperband
(in 'mlr3hyperband'). bbotk is the base package of 'mlr3tuning',
'mlr3fselect' and 'miesmuschel'.
Author: Marc Becker [cre, aut] ,
Jakob Richter [aut] ,
Michel Lang [aut] ,
Bernd Bischl [aut] ,
Martin Binder [aut],
Olaf Mersmann [ctb]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between bbotk versions 1.2.0 dated 2024-10-25 and 1.3.0 dated 2024-11-07
DESCRIPTION | 9 - MD5 | 62 +++---- NEWS.md | 6 R/CallbackAsync.R | 105 ++++++++----- R/CallbackBatch.R | 80 +++++++--- R/ContextAsync.R | 80 +++++++--- R/ContextBatch.R | 48 +++++- R/OptimInstance.R | 5 R/OptimInstanceAsync.R | 18 +- R/OptimInstanceAsyncMultiCrit.R | 33 +++- R/OptimInstanceAsyncSingleCrit.R | 33 +++- R/OptimInstanceBatch.R | 1 R/OptimInstanceBatchMultiCrit.R | 33 +++- R/OptimInstanceBatchSingleCrit.R | 33 +++- R/OptimizerAsync.R | 2 R/OptimizerAsyncDesignPoints.R | 2 R/OptimizerAsyncGridSearch.R | 2 R/OptimizerAsyncRandomSearch.R | 2 R/bbotk_reflections.R | 2 man/CallbackAsync.Rd | 8 - man/CallbackBatch.Rd | 8 - man/ContextAsync.Rd | 31 ++- man/ContextBatch.Rd | 19 +- man/OptimInstanceAsync.Rd | 13 + man/OptimInstanceAsyncMultiCrit.Rd | 1 man/OptimInstanceAsyncSingleCrit.Rd | 1 man/callback_async.Rd | 30 +++ man/callback_batch.Rd | 25 ++- tests/testthat/test_CallbackAsync.R | 160 +++++++++++++++++++- tests/testthat/test_CallbackBatch.R | 166 +++++++++++++++++++-- tests/testthat/test_OptimInstanceAsyncSingleCrit.R | 28 +++ tests/testthat/test_OptimizerAsync.R | 29 +++ 32 files changed, 856 insertions(+), 219 deletions(-)
Title: Multi-State Markov and Hidden Markov Models in Continuous Time
Description: Functions for fitting continuous-time Markov and hidden
Markov multi-state models to longitudinal data. Designed for
processes observed at arbitrary times in continuous time (panel data)
but some other observation schemes are supported. Both Markov
transition rates and the hidden Markov output process can be modelled
in terms of covariates, which may be constant or piecewise-constant
in time.
Author: Christopher Jackson [aut, cre]
Maintainer: Christopher Jackson <chris.jackson@mrc-bsu.cam.ac.uk>
Diff between msm versions 1.8.1 dated 2024-10-04 and 1.8.2 dated 2024-11-07
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NEWS.md | 5 +++++ R/msm.R | 2 +- inst/doc/msm-manual.pdf |binary 5 files changed, 15 insertions(+), 10 deletions(-)
Title: Visualizations for 'mlr3'
Description: Visualization package of the 'mlr3' ecosystem. It features
plots for mlr3 objects such as tasks, learners, predictions, benchmark
results, tuning instances and filters via the 'autoplot()' generic of
'ggplot2'. The package draws plots with the 'viridis' color palette
and applies the minimal theme. Visualizations include barplots,
boxplots, histograms, ROC curves, and Precision-Recall curves.
Author: Michel Lang [aut] ,
Patrick Schratz [aut] ,
Raphael Sonabend [aut] ,
Marc Becker [cre, aut] ,
Jakob Richter [aut] ,
Damir Pulatov [ctb],
John Zobolas [aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3viz versions 0.9.0 dated 2024-07-01 and 0.10.0 dated 2024-11-07
DESCRIPTION | 20 MD5 | 38 NAMESPACE | 2 NEWS.md | 5 R/BenchmarkResult.R | 1 R/LearnerSurvCoxPH.R |only R/OptimInstanceBatchSingleCrit.R | 2 R/PredictionRegr.R | 2 build/partial.rdb |binary man/autoplot.LearnerSurvCoxPH.Rd |only man/autoplot.PredictionRegr.Rd | 2 man/mlr3viz-package.Rd | 4 tests/testthat/_snaps/PredictionClust/predictionclust-scatter.svg |only tests/testthat/_snaps/TaskClassif/taskclassif-pairs.svg |only tests/testthat/_snaps/TaskClust |only tests/testthat/_snaps/TaskRegr/taskregr-pairs.svg |only tests/testthat/_snaps/plot_learner_prediction/learner-prediction-1d-response.svg | 598 --------- tests/testthat/_snaps/plot_learner_prediction/learner-prediction-1d-se.svg | 604 +-------- tests/testthat/_snaps/plot_learner_prediction/learner-prediction-2d.svg | 634 +--------- tests/testthat/test_BenchmarkResult.R | 1 tests/testthat/test_ResampleResult.R | 6 tests/testthat/test_Task.R | 2 tests/testthat/test_plot_learner_prediction.R | 4 23 files changed, 258 insertions(+), 1667 deletions(-)
Title: Feature Selection for 'mlr3'
Description: Feature selection package of the 'mlr3' ecosystem. It selects
the optimal feature set for any 'mlr3' learner. The package works with
several optimization algorithms e.g. Random Search, Recursive Feature
Elimination, and Genetic Search. Moreover, it can automatically
optimize learners and estimate the performance of optimized feature
sets with nested resampling.
Author: Marc Becker [aut, cre] ,
Patrick Schratz [aut] ,
Michel Lang [aut] ,
Bernd Bischl [aut] ,
John Zobolas [aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3fselect versions 1.2.0 dated 2024-10-25 and 1.2.1 dated 2024-11-07
DESCRIPTION | 6 ++-- MD5 | 28 +++++++++---------- NEWS.md | 4 ++ R/AutoFSelector.R | 8 ++++- R/auto_fselector.R | 7 +++- R/mlr_callbacks.R | 4 +- R/zzz.R | 2 - man/AutoFSelector.Rd | 6 +++- man/auto_fselector.Rd | 6 +++- tests/testthat/test_AutoFSelector.R | 2 + tests/testthat/test_FSelectorShadowVariableSearch.R | 2 - tests/testthat/test_ensemble_fselect.R | 12 ++++---- tests/testthat/test_extract_inner_fselect_archives.R | 20 ++++++------- tests/testthat/test_extract_inner_fselect_result.R | 24 ++++++++-------- tests/testthat/test_fsi.R | 4 +- 15 files changed, 78 insertions(+), 57 deletions(-)
Title: Handle Strings as Vectors of Characters
Description: Creates a new chars class which looks like a string but is actually
a vector of individual characters, making 'strings' iterable. This class
enables vector operations on 'strings' such as reverse, sort, head, and set
operations.
Author: Jonathan Carroll [aut, cre]
Maintainer: Jonathan Carroll <rpkg@jcarroll.com.au>
Diff between charcuterie versions 0.0.4 dated 2024-09-13 and 0.0.6 dated 2024-11-07
DESCRIPTION | 8 ++++---- MD5 | 13 ++++++++----- NAMESPACE | 1 + NEWS.md | 8 ++++++++ R/count.R |only README.md | 7 +++++++ build/vignette.rds |binary man/count.Rd |only tests/testthat/test-count.R |only 9 files changed, 28 insertions(+), 9 deletions(-)
Title: Find Differences Between R Objects
Description: Compare complex R objects and reveal the key differences.
Designed particularly for use in testing packages where being able to
quickly isolate key differences makes understanding test failures much
easier.
Author: Hadley Wickham [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between waldo versions 0.6.0 dated 2024-11-04 and 0.6.1 dated 2024-11-07
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ R/num_equal.R | 2 +- 4 files changed, 11 insertions(+), 7 deletions(-)
Title: Spatiotemporal Arrays, Raster and Vector Data Cubes
Description: Reading, manipulating, writing and plotting
spatiotemporal arrays (raster and vector data cubes) in 'R', using 'GDAL'
bindings provided by 'sf', and 'NetCDF' bindings by 'ncmeta' and 'RNetCDF'.
Author: Edzer Pebesma [aut, cre] ,
Michael Sumner [ctb] ,
Etienne Racine [ctb],
Adriano Fantini [ctb],
David Blodgett [ctb],
Krzysztof Dyba [ctb]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between stars versions 0.6-6 dated 2024-07-16 and 0.6-7 dated 2024-11-07
stars-0.6-6/stars/tests/testthat/Rplots.pdf |only stars-0.6-7/stars/DESCRIPTION | 10 stars-0.6-7/stars/MD5 | 119 +-- stars-0.6-7/stars/NAMESPACE | 3 stars-0.6-7/stars/NEWS.md | 12 stars-0.6-7/stars/R/dimensions.R | 7 stars-0.6-7/stars/R/extract.R | 16 stars-0.6-7/stars/R/mdim.R | 108 ++ stars-0.6-7/stars/R/ops.R | 27 stars-0.6-7/stars/R/proxy.R | 22 stars-0.6-7/stars/R/raster.R | 2 stars-0.6-7/stars/R/rasterize.R | 12 stars-0.6-7/stars/R/read.R | 2 stars-0.6-7/stars/R/sf.R | 9 stars-0.6-7/stars/R/stars.R | 16 stars-0.6-7/stars/R/subset.R | 13 stars-0.6-7/stars/R/tidyverse.R | 3 stars-0.6-7/stars/R/warp.R | 4 stars-0.6-7/stars/build/vignette.rds |binary stars-0.6-7/stars/inst/doc/stars1.html | 990 +++++++++++++------------- stars-0.6-7/stars/inst/doc/stars2.html | 895 ++++++++++++----------- stars-0.6-7/stars/inst/doc/stars3.html | 362 ++++----- stars-0.6-7/stars/inst/doc/stars4.html | 801 +++++++++++---------- stars-0.6-7/stars/inst/doc/stars5.html | 453 ++++++----- stars-0.6-7/stars/inst/doc/stars6.html | 145 ++- stars-0.6-7/stars/inst/doc/stars7.html | 33 stars-0.6-7/stars/inst/doc/stars8.html | 336 ++++---- stars-0.6-7/stars/man/mdim.Rd | 4 stars-0.6-7/stars/man/read_stars.Rd | 2 stars-0.6-7/stars/man/st_crop.Rd | 7 stars-0.6-7/stars/man/st_extract.Rd | 6 stars-0.6-7/stars/tests/aggregate.Rout.save | 4 stars-0.6-7/stars/tests/align.Rout.save | 4 stars-0.6-7/stars/tests/area.Rout.save | 4 stars-0.6-7/stars/tests/crop.Rout.save | 4 stars-0.6-7/stars/tests/curvilinear.Rout.save | 4 stars-0.6-7/stars/tests/datasets.Rout.save | 4 stars-0.6-7/stars/tests/dimensions.Rout.save | 4 stars-0.6-7/stars/tests/downsample.Rout.save | 4 stars-0.6-7/stars/tests/ee.Rout.save | 4 stars-0.6-7/stars/tests/extract.Rout.save | 4 stars-0.6-7/stars/tests/gridtypes.Rout.save | 4 stars-0.6-7/stars/tests/mdim.Rout.save | 4 stars-0.6-7/stars/tests/nc.Rout.save | 4 stars-0.6-7/stars/tests/plot.Rout.save | 4 stars-0.6-7/stars/tests/predict.Rout.save | 8 stars-0.6-7/stars/tests/proxy.Rout.save | 20 stars-0.6-7/stars/tests/raster.Rout.save | 4 stars-0.6-7/stars/tests/rasterize.Rout.save | 4 stars-0.6-7/stars/tests/rectilinear.Rout.save | 4 stars-0.6-7/stars/tests/redimension.Rout.save | 4 stars-0.6-7/stars/tests/sf.Rout.save | 4 stars-0.6-7/stars/tests/sp.Rout.save | 4 stars-0.6-7/stars/tests/spacetime.Rout.save | 4 stars-0.6-7/stars/tests/spatstat.Rout.save | 4 stars-0.6-7/stars/tests/stars.Rout.save | 4 stars-0.6-7/stars/tests/subset.Rout.save | 4 stars-0.6-7/stars/tests/tidy.Rout.save | 4 stars-0.6-7/stars/tests/transform.Rout.save | 4 stars-0.6-7/stars/tests/warp.Rout.save | 4 stars-0.6-7/stars/tests/write.Rout.save | 4 61 files changed, 2472 insertions(+), 2087 deletions(-)
Title: Multiple Imputation of Covariates by Substantive Model
Compatible Fully Conditional Specification
Description: Implements multiple imputation of missing covariates by
Substantive Model Compatible Fully Conditional Specification.
This is a modification of the popular FCS/chained equations
multiple imputation approach, and allows imputation of missing
covariate values from models which are compatible with the user
specified substantive model.
Author: Jonathan Bartlett [aut, cre],
Ruth Keogh [aut],
Edouard F. Bonneville [aut],
Claus Thorn Ekstroem [ctb]
Maintainer: Jonathan Bartlett <jonathan.bartlett1@lshtm.ac.uk>
Diff between smcfcs versions 1.8.0 dated 2024-06-04 and 1.9.0 dated 2024-11-07
DESCRIPTION | 10 - MD5 | 27 ++-- NAMESPACE | 1 R/data.r | 15 ++ R/smcfcs.flexsurv.r |only R/smcfcs.r | 215 +++++++++++++++++++++++++++++---- build/partial.rdb |binary build/vignette.rds |binary data/ex_flexsurv.rda |only inst/doc/smcfcs-vignette.html | 8 - inst/doc/smcfcs_coverror-vignette.html | 8 - man/ex_flexsurv.Rd |only man/smcfcs.casecohort.Rd | 2 man/smcfcs.dtsam.Rd | 2 man/smcfcs.flexsurv.Rd |only man/smcfcs.nestedcc.Rd | 2 tests/testthat/test_flexsurv.r |only 17 files changed, 240 insertions(+), 50 deletions(-)
Title: Enhancing the 'parallel' Package
Description: Utility functions that enhance the 'parallel' package and support the built-in parallel backends of the 'future' package. For example, availableCores() gives the number of CPU cores available to your R process as given by the operating system, 'cgroups' and Linux containers, R options, and environment variables, including those set by job schedulers on high-performance compute clusters. If none is set, it will fall back to parallel::detectCores(). Another example is makeClusterPSOCK(), which is backward compatible with parallel::makePSOCKcluster() while doing a better job in setting up remote cluster workers without the need for configuring the firewall to do port-forwarding to your local computer.
Author: Henrik Bengtsson [aut, cre, cph]
,
Mike Cheng [ctb]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between parallelly versions 1.38.0 dated 2024-07-27 and 1.39.0 dated 2024-11-07
DESCRIPTION | 6 MD5 | 20 - NEWS.md | 35 ++ R/availableCores.R | 16 - R/cgroups.R | 694 ++++++++++++++++++++++++------------------------ R/ports.R | 69 ++-- R/utils,cluster.R | 9 README.md | 4 man/availableCores.Rd | 4 man/makeClusterPSOCK.Rd | 30 +- tests/cgroups.R | 44 +-- 11 files changed, 505 insertions(+), 426 deletions(-)
Title: Tools for Cleaning Rectangular Data
Description: A dependency-free collection of simple functions for cleaning
rectangular data. This package allows to detect, count and replace
values or discard rows/columns using a predicate function. In
addition, it provides tools to check conditions and return informative
error messages.
Author: Nicolas Frerebeau [aut, cre] ,
Brice Lebrun [ctb] ,
Universite Bordeaux Montaigne [fnd],
CNRS [fnd]
Maintainer: Nicolas Frerebeau <nicolas.frerebeau@u-bordeaux-montaigne.fr>
Diff between arkhe versions 1.7.0 dated 2024-07-29 and 1.8.0 dated 2024-11-07
arkhe-1.7.0/arkhe/man/append.Rd |only arkhe-1.7.0/arkhe/man/assert_data.Rd |only arkhe-1.7.0/arkhe/man/predicate-utils.Rd |only arkhe-1.8.0/arkhe/DESCRIPTION | 16 - arkhe-1.8.0/arkhe/MD5 | 110 ++++--- arkhe-1.8.0/arkhe/NAMESPACE | 7 arkhe-1.8.0/arkhe/NEWS.md | 10 arkhe-1.8.0/arkhe/R/AllGenerics.R | 46 ++- arkhe-1.8.0/arkhe/R/append.R | 48 +++ arkhe-1.8.0/arkhe/R/arkhe-deprecated.R | 11 arkhe-1.8.0/arkhe/R/arkhe-internal.R | 5 arkhe-1.8.0/arkhe/R/arkhe-package.R | 2 arkhe-1.8.0/arkhe/R/assert.R | 346 ++++++++++++++----------- arkhe-1.8.0/arkhe/R/conditions.R | 5 arkhe-1.8.0/arkhe/R/describe.R | 41 +- arkhe-1.8.0/arkhe/R/discard.R | 4 arkhe-1.8.0/arkhe/R/get.R | 16 - arkhe-1.8.0/arkhe/R/predicates.R | 99 +++++-- arkhe-1.8.0/arkhe/R/seek.R | 47 ++- arkhe-1.8.0/arkhe/README.md | 52 ++- arkhe-1.8.0/arkhe/inst/examples/ex-append.R |only arkhe-1.8.0/arkhe/inst/examples/ex-seek.R | 8 arkhe-1.8.0/arkhe/inst/po |only arkhe-1.8.0/arkhe/inst/tinytest/test_append.R |only arkhe-1.8.0/arkhe/inst/tinytest/test_assert.R | 42 +-- arkhe-1.8.0/arkhe/inst/tinytest/test_assign.R | 15 - arkhe-1.8.0/arkhe/inst/tinytest/test_discard.R | 12 arkhe-1.8.0/arkhe/inst/tinytest/test_keep.R | 12 arkhe-1.8.0/arkhe/inst/tinytest/test_seek.R | 7 arkhe-1.8.0/arkhe/man/append_column.Rd |only arkhe-1.8.0/arkhe/man/append_rownames.Rd |only arkhe-1.8.0/arkhe/man/arkhe-deprecated.Rd | 4 arkhe-1.8.0/arkhe/man/arkhe-package.Rd | 2 arkhe-1.8.0/arkhe/man/assert_constant.Rd | 11 arkhe-1.8.0/arkhe/man/assert_dim.Rd |only arkhe-1.8.0/arkhe/man/assert_empty.Rd |only arkhe-1.8.0/arkhe/man/assert_infinite.Rd |only arkhe-1.8.0/arkhe/man/assert_length.Rd | 31 +- arkhe-1.8.0/arkhe/man/assert_lower.Rd | 11 arkhe-1.8.0/arkhe/man/assert_missing.Rd |only arkhe-1.8.0/arkhe/man/assert_names.Rd | 20 - arkhe-1.8.0/arkhe/man/assert_numeric.Rd | 11 arkhe-1.8.0/arkhe/man/assert_package.Rd | 11 arkhe-1.8.0/arkhe/man/assert_square.Rd | 11 arkhe-1.8.0/arkhe/man/assert_type.Rd | 18 - arkhe-1.8.0/arkhe/man/assert_unique.Rd |only arkhe-1.8.0/arkhe/man/assign.Rd | 3 arkhe-1.8.0/arkhe/man/compact.Rd | 3 arkhe-1.8.0/arkhe/man/count.Rd | 3 arkhe-1.8.0/arkhe/man/detect.Rd | 3 arkhe-1.8.0/arkhe/man/discard.Rd | 3 arkhe-1.8.0/arkhe/man/get.Rd | 26 + arkhe-1.8.0/arkhe/man/is_scalar.Rd | 6 arkhe-1.8.0/arkhe/man/keep.Rd | 3 arkhe-1.8.0/arkhe/man/predicate-attributes.Rd |only arkhe-1.8.0/arkhe/man/predicate-data.Rd |only arkhe-1.8.0/arkhe/man/predicate-matrix.Rd | 6 arkhe-1.8.0/arkhe/man/predicate-names.Rd |only arkhe-1.8.0/arkhe/man/predicate-numeric.Rd | 6 arkhe-1.8.0/arkhe/man/predicate-trend.Rd | 6 arkhe-1.8.0/arkhe/man/predicate-type.Rd | 6 arkhe-1.8.0/arkhe/man/seek.Rd | 30 +- arkhe-1.8.0/arkhe/man/validate.Rd | 12 arkhe-1.8.0/arkhe/po |only 64 files changed, 755 insertions(+), 452 deletions(-)
Title: Supporting Functions for Packages Maintained by 'YuLab-SMU'
Description: Miscellaneous functions commonly used by 'YuLab-SMU'.
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between yulab.utils versions 0.1.7 dated 2024-08-26 and 0.1.8 dated 2024-11-07
DESCRIPTION | 6 ++-- MD5 | 12 ++++---- NEWS.md | 6 ++++ R/bib-knownledge.R | 75 ++++++++++++++++++++++++++++++++------------------- R/pkg-utils.R | 3 +- R/yulab-msg.R | 2 - inst/prototype/GEO.r |only inst/prototype/sra.r |only 8 files changed, 67 insertions(+), 37 deletions(-)
Title: Interpolating Age-Specific Mortality Rates at All Ages
Description: Mortality rates are typically provided in an abridged format, i.e., by age groups 0, [1, 5], [5, 10]', '[10, 15]', and so on. Some applications necessitate a detailed (single) age description. Despite the large number of proposed approaches in the literature, only a few methods ensure great performance at both younger and higher ages. For example, the 6-term 'Lagrange' interpolation function is well suited to mortality interpolation at younger ages (with irregular intervals), but not at older ages. The 'Karup-King' method, on the other hand, performs well at older ages but is not suitable for younger ones. Interested readers can find a full discussion of the two stated methods in the book Shryock, Siegel, and Associates (1993).The Q2q package combines the two methods to allow for the interpolation of mortality rates across all age groups. It begins by implementing each method independently, and then the resulting curves are linked using a 5-age averaged error between the two partial cu [...truncated...]
Author: Farid FLICI [aut, cre]
Maintainer: Farid FLICI <farid.flici@cread.dz>
Diff between Q2q versions 0.1.0 dated 2020-11-23 and 0.1.1 dated 2024-11-07
DESCRIPTION | 31 +-- MD5 | 35 +++ NAMESPACE | 5 R/Q2q.R | 58 ++++-- R/data.R |only README.md | 513 ++++++++++++++++++++++++++++++++++++++++++++++------------ data |only man/LT.Rd |only man/figures |only man/getqx.Rd | 4 man/getqxt.Rd | 13 - tests |only 12 files changed, 505 insertions(+), 154 deletions(-)
Title: Mixture and Flexible Discriminant Analysis
Description: Mixture and flexible discriminant analysis, multivariate
adaptive regression splines (MARS), BRUTO, and vector-response smoothing splines.
Hastie, Tibshirani and Friedman (2009) "Elements of Statistical Learning (second edition, chap 12)" Springer, New York.
Author: Trevor Hastie [aut, cre] ,
Robert Tibshirani [aut] ,
Balasubramanian Narasimhan [ctb] ,
Friedrich Leisch [ctb] ,
Kurt Hornik [ctb] ,
Brian Ripley [ctb]
Maintainer: Trevor Hastie <hastie@stanford.edu>
Diff between mda versions 0.5-4 dated 2023-06-22 and 0.5-5 dated 2024-11-07
DESCRIPTION | 42 ++++++++++++++++++++++++++++++++++++------ MD5 | 4 ++-- src/bsplvd.f | 7 +++++-- 3 files changed, 43 insertions(+), 10 deletions(-)
Title: Raw Accelerometer Data Analysis
Description: A tool to process and analyse data collected with wearable raw acceleration sensors as described in Migueles and colleagues (JMPB 2019), and van Hees and colleagues (JApplPhysiol 2014; PLoSONE 2015). The package has been developed and tested for binary data from 'GENEActiv' <https://activinsights.com/>, binary (.gt3x) and .csv-export data from 'Actigraph' <https://theactigraph.com> devices, and binary (.cwa) and .csv-export data from 'Axivity' <https://axivity.com>. These devices are currently widely used in research on human daily physical activity. Further, the package can handle accelerometer data file from any other sensor brand providing that the data is stored in csv format. Also the package allows for external function embedding.
Author: Vincent T van Hees [aut, cre],
Jairo H Migueles [aut] ,
Severine Sabia [ctb],
Matthew R Patterson [ctb],
Zhou Fang [ctb],
Joe Heywood [ctb],
Joan Capdevila Pujol [ctb],
Lena Kushleyeva [ctb],
Mathilde Chen [ctb],
Manasa Yerramalla [ctb],
Patrick Bos [...truncated...]
Maintainer: Vincent T van Hees <v.vanhees@accelting.com>
Diff between GGIR versions 3.1-4 dated 2024-09-03 and 3.1-5 dated 2024-11-07
DESCRIPTION | 12 +- MD5 | 74 ++++++++--------- NEWS.md | 22 +++++ R/GGIR.R | 2 R/check_params.R | 2 R/detect_nonwear_clipping.R | 117 +++++++++++++--------------- R/extract_params.R | 3 R/g.part4.R | 7 - R/g.part5.R | 10 +- R/g.part5.addfirstwake.R | 6 - R/g.part5.definedays.R | 30 ++----- R/g.part5.savetimeseries.R | 32 ++++++- R/g.part5.wakesleepwindows.R | 28 +++++- R/g.part6.R | 9 +- R/g.report.part2.R | 12 ++ R/g.report.part4.R | 3 R/g.report.part5.R | 38 +++++++-- R/g.shell.GGIR.R | 3 R/load_params.R | 5 - R/zzz.R | 1 README.md | 2 inst/doc/GGIR.html | 6 - inst/doc/GGIRParameters.Rmd | 1 inst/doc/GGIRParameters.html | 25 ++++- inst/doc/GGIRoutput.html | 4 inst/doc/TutorialDaySegmentAnalyses.html | 2 inst/doc/readmyacccsv.R | 4 inst/doc/readmyacccsv.Rmd | 12 +- inst/doc/readmyacccsv.html | 25 +++-- man/GGIR-package.Rd | 4 man/GGIR.Rd | 9 ++ man/g.part5.savetimeseries.Rd | 15 ++- man/g.report.part2.Rd | 5 - tests/testthat/test_load_check_params.R | 2 tests/testthat/test_part6.R | 11 +- tests/testthat/test_recordingEndSleepHour.R | 57 ++++++++----- vignettes/GGIRParameters.Rmd | 1 vignettes/readmyacccsv.Rmd | 12 +- 38 files changed, 391 insertions(+), 222 deletions(-)
Title: Frictionless Standards
Description: A "tabular-data-resource" (<https://specs.frictionlessdata.io/tabular-data-resource/>) is a simple format to describe a singular tabular data resource such as a CSV file. It includes support both for metadata such as author and title and a schema to describe the data, for example the types of the fields/columns in the data. Create a tabular-data-resource by providing a data.frame and specifying metadata. Write and read tabular-data-resources to and from disk.
Author: Cole Brokamp [aut, cre, cph] ,
Tomasz Kalinowski [ctb]
Maintainer: Cole Brokamp <cole@colebrokamp.com>
Diff between fr versions 0.5.1 dated 2023-11-30 and 0.5.2 dated 2024-11-07
DESCRIPTION | 21 ++++++++++------- MD5 | 30 ++++++++++++------------- NEWS.md | 4 +++ R/fr_field.R | 3 +- R/fr_schema.R | 1 R/fr_tdr.R | 7 +---- build/vignette.rds |binary inst/doc/creating_a_tabular-data-resource.html | 6 ++--- inst/doc/read_fr_tdr.html | 6 ++--- man/fr-package.Rd | 5 ++++ tests/testthat/_snaps/fr_field.md | 4 +-- tests/testthat/_snaps/fr_schema.md | 2 - tests/testthat/_snaps/fr_tdr.md | 4 +-- tests/testthat/test-fr_field.R | 1 tests/testthat/test-fr_schema.R | 1 tests/testthat/test-fr_tdr.R | 1 16 files changed, 52 insertions(+), 44 deletions(-)
Title: Disciplined Convex Optimization
Description: An object-oriented modeling language for disciplined
convex programming (DCP) as described in Fu, Narasimhan, and Boyd
(2020, <doi:10.18637/jss.v094.i14>). It allows the user to
formulate convex optimization problems in a natural way following
mathematical convention and DCP rules. The system analyzes the
problem, verifies its convexity, converts it into a canonical
form, and hands it off to an appropriate solver to obtain the
solution. Interfaces to solvers on CRAN and elsewhere are
provided, both commercial and open source.
Author: Anqi Fu [aut, cre],
Balasubramanian Narasimhan [aut],
David W Kang [aut],
Steven Diamond [aut],
John Miller [aut],
Stephen Boyd [ctb],
Paul Kunsberg Rosenfield [ctb]
Maintainer: Anqi Fu <anqif@alumni.stanford.edu>
Diff between CVXR versions 1.0-14 dated 2024-06-27 and 1.0-15 dated 2024-11-07
CVXR-1.0-14/CVXR/R/CVXcanon-R6.R |only CVXR-1.0-14/CVXR/R/Deque.R |only CVXR-1.0-14/CVXR/R/LinOp-R6.R |only CVXR-1.0-14/CVXR/R/LinOpVector-R6.R |only CVXR-1.0-14/CVXR/R/ProblemData-R6.R |only CVXR-1.0-14/CVXR/R/R6List.R |only CVXR-1.0-15/CVXR/DESCRIPTION | 23 ++--- CVXR-1.0-15/CVXR/MD5 | 53 ++++++------ CVXR-1.0-15/CVXR/NAMESPACE | 3 CVXR-1.0-15/CVXR/NEWS.md | 12 ++ CVXR-1.0-15/CVXR/R/CVXcanon.R |only CVXR-1.0-15/CVXR/R/LinOp.R |only CVXR-1.0-15/CVXR/R/LinOpVector.R |only CVXR-1.0-15/CVXR/R/RcppExports.R | 4 CVXR-1.0-15/CVXR/R/canonInterface.R | 50 +++++------ CVXR-1.0-15/CVXR/R/clarabel.R | 6 - CVXR-1.0-15/CVXR/R/coll_utils.R |only CVXR-1.0-15/CVXR/R/conic_solvers.R | 41 ++++++--- CVXR-1.0-15/CVXR/R/elementwise.R | 14 +-- CVXR-1.0-15/CVXR/R/problem.R | 22 ++++- CVXR-1.0-15/CVXR/R/qp_solvers.R | 42 ++++++--- CVXR-1.0-15/CVXR/R/solver_utilities.R | 17 ++++ CVXR-1.0-15/CVXR/R/utilities.R | 61 +++++++++++++- CVXR-1.0-15/CVXR/R/variable.R | 68 ++++++++-------- CVXR-1.0-15/CVXR/build/vignette.rds |binary CVXR-1.0-15/CVXR/inst/doc/cvxr_intro.html | 4 CVXR-1.0-15/CVXR/inst/doc/version1.html | 4 CVXR-1.0-15/CVXR/inst/extdata/gurobi_status_codes.csv |only CVXR-1.0-15/CVXR/man/figures |only CVXR-1.0-15/CVXR/src/RcppConv.cpp | 25 +++++ CVXR-1.0-15/CVXR/src/RcppExports.cpp | 12 ++ CVXR-1.0-15/CVXR/tests/testthat/test-g05-gurobi.R | 4 CVXR-1.0-15/CVXR/tests/testthat/test-g05-solver_tests.R | 6 - 33 files changed, 324 insertions(+), 147 deletions(-)
Title: Interface to the 'ValidMind' Platform
Description: Deploy, execute, and analyze the results of models hosted on the
'ValidMind' platform <https://validmind.com>. This package interfaces with the
'Python' client library in order to allow advanced diagnostics and insight
into trained models all from an 'R' environment.
Author: Andres Rodriguez [aut, cre, cph]
Maintainer: Andres Rodriguez <andres@validmind.ai>
Diff between validmind versions 0.1.1 dated 2024-04-08 and 0.1.2 dated 2024-11-07
validmind-0.1.1/validmind/R/helpers.R |only validmind-0.1.2/validmind/DESCRIPTION | 8 +- validmind-0.1.2/validmind/MD5 | 28 ++++--- validmind-0.1.2/validmind/NAMESPACE | 4 + validmind-0.1.2/validmind/R/custom_tests.R |only validmind-0.1.2/validmind/R/platform.R |only validmind-0.1.2/validmind/README.md | 56 ++++++++++++++- validmind-0.1.2/validmind/man/build_r_plotly.Rd | 2 validmind-0.1.2/validmind/man/display_report.Rd | 2 validmind-0.1.2/validmind/man/print_summary_tables.Rd | 2 validmind-0.1.2/validmind/man/process_result.Rd | 2 validmind-0.1.2/validmind/man/register_custom_test.Rd |only validmind-0.1.2/validmind/man/run_custom_test.Rd |only validmind-0.1.2/validmind/man/save_model.Rd |only validmind-0.1.2/validmind/man/summarize_metric_result.Rd | 2 validmind-0.1.2/validmind/man/summarize_result.Rd | 2 validmind-0.1.2/validmind/man/summarize_test_result.Rd | 2 validmind-0.1.2/validmind/man/vm.Rd | 8 +- 18 files changed, 89 insertions(+), 29 deletions(-)
Title: River Network Distance Computation and Applications
Description: Reads river network shape files and computes network distances.
Also included are a variety of computation and graphical tools designed
for fisheries telemetry research, such as minimum home range, kernel density
estimation, and clustering analysis using empirical k-functions with
a bootstrap envelope. Tools are also provided for editing the river
networks, meaning there is no reliance on external software.
Author: Matt Tyers [aut, cre]
Maintainer: Matt Tyers <matttyersstat@gmail.com>
Diff between riverdist versions 0.17.0 dated 2024-10-15 and 0.17.1 dated 2024-11-07
DESCRIPTION | 18 +++++++++--------- MD5 | 8 ++++---- NEWS.md | 4 ++++ inst/doc/riverdist_vignette.html | 10 +++++----- man/riverdist-package.Rd | 4 ++-- 5 files changed, 24 insertions(+), 20 deletions(-)
Title: Extracting and Visualizing Output from 'jagsUI'
Description: Tools are provided to streamline Bayesian analyses in 'JAGS' using
the 'jagsUI' package. Included are functions for extracting output in
simpler format, functions for streamlining assessment of convergence, and
functions for producing summary plots of output. Also included is a
function that provides a simple template for running 'JAGS' from 'R'.
Referenced materials can be found at <DOI:10.1214/ss/1177011136>.
Author: Matt Tyers [aut, cre]
Maintainer: Matt Tyers <matttyersstat@gmail.com>
Diff between jagshelper versions 0.4.0 dated 2024-10-21 and 0.4.1 dated 2024-11-07
DESCRIPTION | 8 - MD5 | 26 ++-- NEWS.md | 4 R/diagnostic_plots.R | 10 - inst/doc/jagshelper-vignette.R | 2 inst/doc/jagshelper-vignette.Rmd | 2 inst/doc/jagshelper-vignette.html | 8 - man/jagshelper-package.Rd | 4 man/plotRhats.Rd | 2 man/plot_postpred.Rd | 240 +++++++++++++++++++------------------- man/qq_postpred.Rd | 2 man/traceworstRhat.Rd | 2 man/ts_postpred.Rd | 196 +++++++++++++++---------------- vignettes/jagshelper-vignette.Rmd | 2 14 files changed, 256 insertions(+), 252 deletions(-)
Title: Minimization of the Convex Clustering Loss Function
Description: Implements the convex clustering through majorization-minimization (CCMM) algorithm described in Touw, Groenen, and Terada (2022) <doi:10.48550/arXiv.2211.01877> to perform minimization of the convex clustering loss function.
Author: Daniel Touw [aut, cre] ,
Patrick Groenen [aut] ,
Yoshikazu Terada [aut]
Maintainer: Daniel Touw <touw@ese.eur.nl>
Diff between CCMMR versions 0.2 dated 2023-12-21 and 0.2.1 dated 2024-11-07
DESCRIPTION | 14 +++---- MD5 | 21 +++++++---- NAMESPACE | 3 - R/clusters.R | 17 +++++---- R/convex_clustering.R | 15 ++++---- R/convex_clusterpath.R | 15 ++++---- inst |only man/plot.cvxclust.Rd | 86 ++++++++++++++++++++++++------------------------- man/two_half_moons.Rd | 38 ++++++++++----------- 9 files changed, 108 insertions(+), 101 deletions(-)
Title: Next Eigenvalue Sufficiency Test
Description: Determine the number of dimensions to retain in exploratory factor analysis. The main function, nest(), returns the solution and the plot(nest()) returns a plot.
Author: P.-O. Caron [aut, cre, cph]
Maintainer: P.-O. Caron <pocaron19@gmail.com>
Diff between Rnest versions 0.0.0.1 dated 2024-05-21 and 0.0.0.2 dated 2024-11-07
DESCRIPTION | 9 +++++---- LICENSE | 4 ++-- MD5 | 29 +++++++++++++++++------------ NAMESPACE | 2 ++ R/ex.mqr.R |only R/meek_bouchard.R | 2 +- R/nest.R | 26 ++++++++++++++++++++------ R/plot.nest.R | 45 ++++++++++++++++++++++++--------------------- R/shem.R |only R/summary.nest.R | 2 +- README.md | 2 +- data/ex.mqr.rda |only man/ex.mqr.Rd |only man/meek_bouchard.Rd | 2 +- man/nest.Rd | 3 +++ man/plot.nest.Rd | 6 ++---- man/shem.Rd |only man/summary.nest.Rd | 2 +- 18 files changed, 80 insertions(+), 54 deletions(-)
Title: High-Level Plotting Built Upon 'ggplot2' and Other Plotting
Packages
Description: Provides high-level API and a wide range of options to create stunning, publication-quality plots effortlessly.
It is built upon 'ggplot2' and other plotting packages, and is designed to be easy to use and to work seamlessly with 'ggplot2' objects.
It is particularly useful for creating complex plots with multiple layers, facets, and annotations.
It also provides a set of functions to create plots for specific types of data, such as Venn diagrams, alluvial diagrams, and phylogenetic trees.
The package is designed to be flexible and customizable, and to work well with the 'ggplot2' ecosystem.
The API can be found at <https://pwwang.github.io/plotthis/reference/index.html>.
Author: Panwen Wang [aut, cre]
Maintainer: Panwen Wang <pwwang@pwwang.com>
Diff between plotthis versions 0.3.5 dated 2024-11-05 and 0.3.6 dated 2024-11-07
DESCRIPTION | 6 ++--- MD5 | 10 ++++---- R/enrich.R | 61 ++++++++++++++++++++++++++++++++++++++++++++++-------- R/volcanoplot.R | 31 ++++++++++++++------------- README.md | 9 ++++++- man/enrichmap1.Rd | 27 +++++++++++++++++++++++ 6 files changed, 109 insertions(+), 35 deletions(-)
Title: Analyzing Animal's Rhythmicity
Description: Analyze and visualize the rhythmic behavior of animals using the
degree of functional coupling (See Scheibe (1999) <doi:10.1076/brhm.30.2.216.1420>),
compute and visualize harmonic power, actograms, average activity and diurnality
index.
Author: Hassan-Roland Nasser [aut, cre],
Marie Schneider [aut, ctb],
Joanna Stachowicz [aut, rev],
Christina Umstaetter [aut, ths]
Maintainer: Hassan-Roland Nasser <hassan.nasser@me.com>
Diff between digiRhythm versions 2.2 dated 2024-07-31 and 2.3 dated 2024-11-07
digiRhythm-2.2/digiRhythm/R/sliding_DI.R |only digiRhythm-2.2/digiRhythm/man/sliding_DI.Rd |only digiRhythm-2.3/digiRhythm/DESCRIPTION | 6 digiRhythm-2.3/digiRhythm/MD5 | 22 - digiRhythm-2.3/digiRhythm/NAMESPACE | 2 digiRhythm-2.3/digiRhythm/R/diurnality_customTimes.R |only digiRhythm-2.3/digiRhythm/R/resample_dgm.R | 2 digiRhythm-2.3/digiRhythm/README.md | 4 digiRhythm-2.3/digiRhythm/build/vignette.rds |binary digiRhythm-2.3/digiRhythm/inst/doc/Actgram_diurnality_avg_activity.html | 12 - digiRhythm-2.3/digiRhythm/inst/doc/DFC_and_HP_and_changing_plots.html | 111 ++++------ digiRhythm-2.3/digiRhythm/inst/doc/Loading_and_preprocessing_data_in_DigiRhythm.html | 8 digiRhythm-2.3/digiRhythm/inst/doc/Visualisation.html | 8 digiRhythm-2.3/digiRhythm/man/diurnality_customTimes.Rd |only 14 files changed, 87 insertions(+), 88 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-04-25 0.1.1
2023-01-31 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-09-20 0.0.4
2023-02-07 0.0.3
2020-10-31 0.0.2
2020-09-30 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-02 0.9.11
2016-04-18 0.9.10
2015-12-03 0.9.9.5
2015-10-03 0.9.8.2
2015-08-22 0.9.7.10
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-05-17 1.0.2
2021-05-10 1.0.1
2021-05-06 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-01 0.7.3
2016-04-18 0.6.1
2016-02-22 0.5.0
2015-12-01 0.4
2015-09-22 0.3.0
2015-08-22 0.2.5
2015-08-14 0.2.4
2015-07-27 0.2
Title: Natural Language Processing for Meta Analysis
Description: Given a CSV file with titles and abstracts, the package creates a
document-term matrix that is lemmatized and stemmed and can directly be used to
train machine learning methods for automatic title-abstract screening in the
preparation of a meta analysis.
Author: Nico Bruder [aut] ,
Samuel Zimmermann [aut] ,
Johannes Vey [aut] ,
Maximilian Pilz [aut, cre] ,
Institute of Medical Biometry - University of Heidelberg [cph]
Maintainer: Maximilian Pilz <maximilian.pilz@itwm.fraunhofer.de>
Diff between MetaNLP versions 0.1.2 dated 2024-05-23 and 0.1.3 dated 2024-11-07
DESCRIPTION | 14 ++-- MD5 | 43 +++++++------ NEWS.md | 16 +++- R/MetaNLP.R | 50 +++++++++++---- R/delete_functions.R | 8 +- R/feature_selection.R | 4 - R/useful_functions.R | 16 ++-- README.md | 2 man/MetaNLP.Rd | 16 ++-- man/delete_stop_words.Rd | 2 man/delete_words.Rd | 4 - man/plot-MetaNLP-missing-method.Rd | 3 man/read_test_data.Rd | 10 +-- man/replace_special_characters.Rd | 2 man/select_features.Rd | 4 - man/write_csv.Rd | 6 - tests/testthat/_snaps/constructor/wordcloud-exclude.svg |only tests/testthat/_snaps/constructor/wordcloud-include.svg |only tests/testthat/data/test_data.csv | 1 tests/testthat/data/test_data_changed.csv | 1 tests/testthat/data/test_data_large.csv | 20 ------ tests/testthat/data/test_data_na.csv |only tests/testthat/test_constructor.R | 52 +++++++++++++++- tests/testthat/test_deletion.R | 3 24 files changed, 170 insertions(+), 107 deletions(-)
Title: An Object Oriented System Meant to Become a Successor to S3 and
S4
Description: A new object oriented programming system designed to be a
successor to S3 and S4. It includes formal class, generic, and method
specification, and a limited form of multiple dispatch. It has been
designed and implemented collaboratively by the R Consortium
Object-Oriented Programming Working Group, which includes
representatives from R-Core, 'Bioconductor', 'Posit'/'tidyverse', and
the wider R community.
Author: Object-Oriented Programming Working Group [cph],
Davis Vaughan [aut],
Jim Hester [aut] ,
Tomasz Kalinowski [aut],
Will Landau [aut],
Michael Lawrence [aut],
Martin Maechler [aut] ,
Luke Tierney [aut],
Hadley Wickham [aut, cre]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between S7 versions 0.1.1 dated 2023-09-17 and 0.2.0 dated 2024-11-07
S7-0.1.1/S7/tests/testthat/t0/R/pkg.R |only S7-0.1.1/S7/tests/testthat/t1/R/foo.R |only S7-0.1.1/S7/tests/testthat/t2/R/pkg.R |only S7-0.2.0/S7/DESCRIPTION | 34 - S7-0.2.0/S7/MD5 | 258 +++++----- S7-0.2.0/S7/NAMESPACE | 14 S7-0.2.0/S7/NEWS.md | 73 ++ S7-0.2.0/S7/R/S3.R | 165 ++++++ S7-0.2.0/S7/R/S4.R | 38 - S7-0.2.0/S7/R/S7-package.R | 3 S7-0.2.0/S7/R/aaa.R |only S7-0.2.0/S7/R/base.R | 67 +- S7-0.2.0/S7/R/class-spec.R | 102 +++- S7-0.2.0/S7/R/class.R | 89 ++- S7-0.2.0/S7/R/compatibility.R |only S7-0.2.0/S7/R/constructor.R | 95 ++- S7-0.2.0/S7/R/convert.R | 80 ++- S7-0.2.0/S7/R/data.R | 4 S7-0.2.0/S7/R/external-generic.R | 40 + S7-0.2.0/S7/R/generic-spec.R | 17 S7-0.2.0/S7/R/generic.R | 3 S7-0.2.0/S7/R/inherits.R | 21 S7-0.2.0/S7/R/method-dispatch.R | 23 S7-0.2.0/S7/R/method-introspect.R | 67 +- S7-0.2.0/S7/R/method-ops.R | 36 - S7-0.2.0/S7/R/method-register.R | 52 +- S7-0.2.0/S7/R/property.R | 240 ++++++--- S7-0.2.0/S7/R/special.R | 27 - S7-0.2.0/S7/R/super.R | 65 ++ S7-0.2.0/S7/R/utils.R | 34 + S7-0.2.0/S7/R/valid.R | 24 S7-0.2.0/S7/R/zzz.R | 55 +- S7-0.2.0/S7/README.md | 1 S7-0.2.0/S7/build/vignette.rds |binary S7-0.2.0/S7/inst/doc/S7.R | 44 - S7-0.2.0/S7/inst/doc/S7.Rmd | 38 - S7-0.2.0/S7/inst/doc/S7.html | 70 +- S7-0.2.0/S7/inst/doc/classes-objects.R | 173 +++++- S7-0.2.0/S7/inst/doc/classes-objects.Rmd | 221 +++++++- S7-0.2.0/S7/inst/doc/classes-objects.html | 423 ++++++++++++----- S7-0.2.0/S7/inst/doc/compatibility.R | 22 S7-0.2.0/S7/inst/doc/compatibility.Rmd | 26 - S7-0.2.0/S7/inst/doc/compatibility.html | 47 - S7-0.2.0/S7/inst/doc/generics-methods.R | 36 - S7-0.2.0/S7/inst/doc/generics-methods.Rmd | 30 - S7-0.2.0/S7/inst/doc/generics-methods.html | 30 - S7-0.2.0/S7/inst/doc/motivation.R | 2 S7-0.2.0/S7/inst/doc/motivation.Rmd | 10 S7-0.2.0/S7/inst/doc/motivation.html | 4 S7-0.2.0/S7/inst/doc/packages.R | 8 S7-0.2.0/S7/inst/doc/packages.Rmd | 13 S7-0.2.0/S7/inst/doc/packages.html | 16 S7-0.2.0/S7/inst/doc/performance.R | 32 - S7-0.2.0/S7/inst/doc/performance.Rmd | 30 - S7-0.2.0/S7/inst/doc/performance.html | 124 ++-- S7-0.2.0/S7/man/S4_register.Rd | 8 S7-0.2.0/S7/man/S7_class.Rd | 4 S7-0.2.0/S7/man/S7_data.Rd | 4 S7-0.2.0/S7/man/S7_inherits.Rd | 21 S7-0.2.0/S7/man/as_class.Rd | 1 S7-0.2.0/S7/man/base_classes.Rd | 43 - S7-0.2.0/S7/man/base_s3_classes.Rd |only S7-0.2.0/S7/man/class_any.Rd |only S7-0.2.0/S7/man/class_missing.Rd | 22 S7-0.2.0/S7/man/convert.Rd | 46 + S7-0.2.0/S7/man/method-set.Rd | 2 S7-0.2.0/S7/man/method.Rd | 23 S7-0.2.0/S7/man/method_explain.Rd | 10 S7-0.2.0/S7/man/new_S3_class.Rd | 6 S7-0.2.0/S7/man/new_class.Rd | 31 - S7-0.2.0/S7/man/new_external_generic.Rd | 4 S7-0.2.0/S7/man/new_property.Rd | 56 -- S7-0.2.0/S7/man/prop.Rd | 8 S7-0.2.0/S7/man/prop_names.Rd | 4 S7-0.2.0/S7/man/props.Rd | 9 S7-0.2.0/S7/man/super.Rd | 65 ++ S7-0.2.0/S7/src/init.c | 73 ++ S7-0.2.0/S7/src/method-dispatch.c | 196 +++++-- S7-0.2.0/S7/src/prop.c |only S7-0.2.0/S7/tests/testthat/_snaps/R-lt-4-3 |only S7-0.2.0/S7/tests/testthat/_snaps/S3.md | 33 - S7-0.2.0/S7/tests/testthat/_snaps/S4.md | 5 S7-0.2.0/S7/tests/testthat/_snaps/class-spec.md | 10 S7-0.2.0/S7/tests/testthat/_snaps/class.md | 105 ++-- S7-0.2.0/S7/tests/testthat/_snaps/constructor.md | 36 - S7-0.2.0/S7/tests/testthat/_snaps/convert.md | 5 S7-0.2.0/S7/tests/testthat/_snaps/external-generic.md | 38 + S7-0.2.0/S7/tests/testthat/_snaps/generic-spec.md | 13 S7-0.2.0/S7/tests/testthat/_snaps/generic.md | 65 +- S7-0.2.0/S7/tests/testthat/_snaps/inherits.md | 19 S7-0.2.0/S7/tests/testthat/_snaps/method-dispatch.md | 74 ++ S7-0.2.0/S7/tests/testthat/_snaps/method-introspect.md | 57 +- S7-0.2.0/S7/tests/testthat/_snaps/method-register.md | 60 +- S7-0.2.0/S7/tests/testthat/_snaps/property.md | 178 ++++--- S7-0.2.0/S7/tests/testthat/_snaps/super.md | 7 S7-0.2.0/S7/tests/testthat/_snaps/union.md | 4 S7-0.2.0/S7/tests/testthat/_snaps/valid.md | 30 - S7-0.2.0/S7/tests/testthat/_snaps/zzz.md | 30 - S7-0.2.0/S7/tests/testthat/helper.R | 106 ++++ S7-0.2.0/S7/tests/testthat/t0/DESCRIPTION | 2 S7-0.2.0/S7/tests/testthat/t0/NAMESPACE | 4 S7-0.2.0/S7/tests/testthat/t0/R/t0.R |only S7-0.2.0/S7/tests/testthat/t1/DESCRIPTION | 2 S7-0.2.0/S7/tests/testthat/t1/NAMESPACE | 3 S7-0.2.0/S7/tests/testthat/t1/R/t1.R |only S7-0.2.0/S7/tests/testthat/t2/DESCRIPTION | 2 S7-0.2.0/S7/tests/testthat/t2/NAMESPACE | 6 S7-0.2.0/S7/tests/testthat/t2/R/t2.R |only S7-0.2.0/S7/tests/testthat/test-S3.R | 4 S7-0.2.0/S7/tests/testthat/test-S4.R | 2 S7-0.2.0/S7/tests/testthat/test-base-r.R | 3 S7-0.2.0/S7/tests/testthat/test-base.R | 328 +++++++++++++ S7-0.2.0/S7/tests/testthat/test-class-spec.R | 9 S7-0.2.0/S7/tests/testthat/test-class.R | 53 +- S7-0.2.0/S7/tests/testthat/test-constructor.R | 126 ++++- S7-0.2.0/S7/tests/testthat/test-convert.R | 46 + S7-0.2.0/S7/tests/testthat/test-external-generic.R | 110 ++++ S7-0.2.0/S7/tests/testthat/test-generic.R | 2 S7-0.2.0/S7/tests/testthat/test-inherits.R | 4 S7-0.2.0/S7/tests/testthat/test-method-dispatch.R | 71 ++ S7-0.2.0/S7/tests/testthat/test-method-introspect.R | 16 S7-0.2.0/S7/tests/testthat/test-method-ops.R | 168 ++++-- S7-0.2.0/S7/tests/testthat/test-method-register.R | 12 S7-0.2.0/S7/tests/testthat/test-property.R | 250 +++++++++- S7-0.2.0/S7/tests/testthat/test-super.R | 6 S7-0.2.0/S7/tests/testthat/test-union.R | 4 S7-0.2.0/S7/tests/testthat/test-valid.R | 9 S7-0.2.0/S7/tests/testthat/test-zzz.R | 2 S7-0.2.0/S7/vignettes/S7.Rmd | 38 - S7-0.2.0/S7/vignettes/classes-objects.Rmd | 221 +++++++- S7-0.2.0/S7/vignettes/compatibility.Rmd | 26 - S7-0.2.0/S7/vignettes/generics-methods.Rmd | 30 - S7-0.2.0/S7/vignettes/motivation.Rmd | 10 S7-0.2.0/S7/vignettes/packages.Rmd | 13 S7-0.2.0/S7/vignettes/performance.Rmd | 30 - S7-0.2.0/S7/vignettes/spec/dispatch.Rmd | 15 136 files changed, 4506 insertions(+), 1758 deletions(-)
Title: Fit, Simulate and Diagnose Exponential-Family Random Graph
Models to Egocentrically Sampled Network Data
Description: Utilities for managing egocentrically sampled network data and a wrapper around the 'ergm' package to facilitate ERGM inference and simulation from such data. See Krivitsky and Morris (2017) <doi:10.1214/16-AOAS1010>.
Author: Pavel N. Krivitsky [aut, cre] ,
Steven M. Goodreau [ctb],
Martina Morris [ctb],
Kirk Li [ctb],
Emily N. Beylerian [ctb],
Michal Bojanowski [ctb] ,
Chad Klumb [ctb]
Maintainer: Pavel N. Krivitsky <pavel@statnet.org>
Diff between ergm.ego versions 1.1.0 dated 2023-05-30 and 1.1.1 dated 2024-11-07
ergm.ego-1.1.0/ergm.ego/build/ergm.ego.pdf |only ergm.ego-1.1.1/ergm.ego/DESCRIPTION | 20 - ergm.ego-1.1.1/ergm.ego/LICENSE | 2 ergm.ego-1.1.1/ergm.ego/MD5 | 105 ++--- ergm.ego-1.1.1/ergm.ego/NAMESPACE | 1 ergm.ego-1.1.1/ergm.ego/R/EgoStat.R | 51 ++ ergm.ego-1.1.1/ergm.ego/R/EgoStat.duration.R | 2 ergm.ego-1.1.1/ergm.ego/R/EgoStat.node.attr.R | 99 +++-- ergm.ego-1.1.1/ergm.ego/R/InitErgmTerm.R | 2 ergm.ego-1.1.1/ergm.ego/R/control.ergm.ego.R | 12 ergm.ego-1.1.1/ergm.ego/R/control.simulate.ergm.ego.R | 14 ergm.ego-1.1.1/ergm.ego/R/degreedist.R | 24 - ergm.ego-1.1.1/ergm.ego/R/egor.R | 33 - ergm.ego-1.1.1/ergm.ego/R/ergm.ego.R | 32 - ergm.ego-1.1.1/ergm.ego/R/fmhfit.R | 2 ergm.ego-1.1.1/ergm.ego/R/gof.ergm.ego.R | 16 ergm.ego-1.1.1/ergm.ego/R/predict.ergmego.R | 2 ergm.ego-1.1.1/ergm.ego/R/reweight.egor.R | 2 ergm.ego-1.1.1/ergm.ego/R/simulate.ergm.ego.R | 25 - ergm.ego-1.1.1/ergm.ego/R/summary.ergm.ego.R | 8 ergm.ego-1.1.1/ergm.ego/R/summary.statistics.egor.R | 18 - ergm.ego-1.1.1/ergm.ego/R/zzz.R | 2 ergm.ego-1.1.1/ergm.ego/build/stage23.rdb |binary ergm.ego-1.1.1/ergm.ego/inst/CITATION | 10 ergm.ego-1.1.1/ergm.ego/inst/NEWS.Rd | 33 + ergm.ego-1.1.1/ergm.ego/man/EgoStat-internal.Rd | 2 ergm.ego-1.1.1/ergm.ego/man/as.egor.egodata.Rd | 10 ergm.ego-1.1.1/ergm.ego/man/as.egor.network.Rd | 14 ergm.ego-1.1.1/ergm.ego/man/control.ergm.ego.Rd | 12 ergm.ego-1.1.1/ergm.ego/man/control.simulate.ergm.ego.Rd | 12 ergm.ego-1.1.1/ergm.ego/man/degreedist.egor.Rd | 5 ergm.ego-1.1.1/ergm.ego/man/ergm.ego-terms.Rd | 19 - ergm.ego-1.1.1/ergm.ego/man/ergm.ego.Rd | 30 - ergm.ego-1.1.1/ergm.ego/man/gof.ergm.ego.Rd | 10 ergm.ego-1.1.1/ergm.ego/man/mixingmatrix.egor.Rd | 10 ergm.ego-1.1.1/ergm.ego/man/nodal_attributes-API.Rd | 40 +- ergm.ego-1.1.1/ergm.ego/man/simulate.ergm.ego.Rd | 23 - ergm.ego-1.1.1/ergm.ego/man/summary_formula.egor.Rd | 14 ergm.ego-1.1.1/ergm.ego/man/template_network.Rd | 14 ergm.ego-1.1.1/ergm.ego/src/changestats.c | 180 ---------- ergm.ego-1.1.1/ergm.ego/src/include_stubs.c | 2 ergm.ego-1.1.1/ergm.ego/src/init.c | 2 ergm.ego-1.1.1/ergm.ego/tests/testthat.R | 2 ergm.ego-1.1.1/ergm.ego/tests/testthat/test-EgoStat.R | 19 - ergm.ego-1.1.1/ergm.ego/tests/testthat/test-boot_jack.R | 2 ergm.ego-1.1.1/ergm.ego/tests/testthat/test-coef_recovery.R | 2 ergm.ego-1.1.1/ergm.ego/tests/testthat/test-degreedist.R | 43 ++ ergm.ego-1.1.1/ergm.ego/tests/testthat/test-drop.R | 2 ergm.ego-1.1.1/ergm.ego/tests/testthat/test-gof.ergm.ego.R | 2 ergm.ego-1.1.1/ergm.ego/tests/testthat/test-mixingmatrix.R | 2 ergm.ego-1.1.1/ergm.ego/tests/testthat/test-netsize.adj.R | 2 ergm.ego-1.1.1/ergm.ego/tests/testthat/test-predict.ergm.ego.R | 2 ergm.ego-1.1.1/ergm.ego/tests/testthat/test-statmismatch.R | 2 ergm.ego-1.1.1/ergm.ego/tests/testthat/test-table_ppop.R | 2 54 files changed, 491 insertions(+), 505 deletions(-)
Title: Open Access to Cryptocurrency Market Data, Sentiment Indicators
and Interactive Charts
Description: This high-level API client provides open access to cryptocurrency market data, sentiment indicators, and interactive charting tools.
The data is sourced from major cryptocurrency exchanges via 'curl' and returned in 'xts'-format. The data comes in open, high, low, and close (OHLC) format with flexible granularity, ranging from seconds to months.
This flexibility makes it ideal for developing and backtesting trading strategies or conducting detailed market analysis.
Author: Serkan Korkmaz [cre, aut, ctb, cph]
,
Jonas Cuzulan Hirani [ctb]
Maintainer: Serkan Korkmaz <serkor1@duck.com>
Diff between cryptoQuotes versions 1.3.1 dated 2024-05-31 and 1.3.2 dated 2024-11-07
cryptoQuotes-1.3.1/cryptoQuotes/tests/testthat/test-kraken.R |only cryptoQuotes-1.3.2/cryptoQuotes/DESCRIPTION | 40 cryptoQuotes-1.3.2/cryptoQuotes/MD5 | 160 +- cryptoQuotes-1.3.2/cryptoQuotes/NAMESPACE | 2 cryptoQuotes-1.3.2/cryptoQuotes/NEWS.md | 234 ++- cryptoQuotes-1.3.2/cryptoQuotes/R/api_binance.R | 236 +-- cryptoQuotes-1.3.2/cryptoQuotes/R/api_bitmart.R | 165 +- cryptoQuotes-1.3.2/cryptoQuotes/R/api_bybit.R | 236 +-- cryptoQuotes-1.3.2/cryptoQuotes/R/api_cryptocom.R |only cryptoQuotes-1.3.2/cryptoQuotes/R/api_huobi.R |only cryptoQuotes-1.3.2/cryptoQuotes/R/api_kraken.R | 154 -- cryptoQuotes-1.3.2/cryptoQuotes/R/api_kucoin.R | 126 - cryptoQuotes-1.3.2/cryptoQuotes/R/api_mexc.R |only cryptoQuotes-1.3.2/cryptoQuotes/R/available_exchanges.R | 40 cryptoQuotes-1.3.2/cryptoQuotes/R/available_intervals.R | 6 cryptoQuotes-1.3.2/cryptoQuotes/R/available_tickers.R | 13 cryptoQuotes-1.3.2/cryptoQuotes/R/chart.R | 157 +- cryptoQuotes-1.3.2/cryptoQuotes/R/chart_fgi.R | 2 cryptoQuotes-1.3.2/cryptoQuotes/R/chart_lsr.R | 2 cryptoQuotes-1.3.2/cryptoQuotes/R/chart_ma.R | 20 cryptoQuotes-1.3.2/cryptoQuotes/R/chart_macd.R | 2 cryptoQuotes-1.3.2/cryptoQuotes/R/chart_rsi.R | 2 cryptoQuotes-1.3.2/cryptoQuotes/R/chart_smi.R | 2 cryptoQuotes-1.3.2/cryptoQuotes/R/chart_volume.R | 2 cryptoQuotes-1.3.2/cryptoQuotes/R/get_fgi.R | 5 cryptoQuotes-1.3.2/cryptoQuotes/R/get_fundingrate.R | 43 cryptoQuotes-1.3.2/cryptoQuotes/R/get_lsratio.R | 59 cryptoQuotes-1.3.2/cryptoQuotes/R/get_openinterest.R | 46 cryptoQuotes-1.3.2/cryptoQuotes/R/get_quote.R | 130 - cryptoQuotes-1.3.2/cryptoQuotes/R/helper.R | 83 - cryptoQuotes-1.3.2/cryptoQuotes/R/store_xts.R |only cryptoQuotes-1.3.2/cryptoQuotes/R/utils.R | 180 +- cryptoQuotes-1.3.2/cryptoQuotes/README.md | 601 +++---- cryptoQuotes-1.3.2/cryptoQuotes/build/vignette.rds |binary cryptoQuotes-1.3.2/cryptoQuotes/inst/doc/cryptoQuotes.Rmd | 8 cryptoQuotes-1.3.2/cryptoQuotes/inst/doc/cryptoQuotes.html | 412 ++--- cryptoQuotes-1.3.2/cryptoQuotes/inst/doc/custom_indicators.R | 394 +---- cryptoQuotes-1.3.2/cryptoQuotes/inst/doc/custom_indicators.Rmd | 465 +----- cryptoQuotes-1.3.2/cryptoQuotes/inst/doc/custom_indicators.html | 755 ++-------- cryptoQuotes-1.3.2/cryptoQuotes/inst/doc/usecase.Rmd | 12 cryptoQuotes-1.3.2/cryptoQuotes/inst/doc/usecase.html | 325 ++-- cryptoQuotes-1.3.2/cryptoQuotes/man/alma.Rd | 6 cryptoQuotes-1.3.2/cryptoQuotes/man/assert.Rd | 2 cryptoQuotes-1.3.2/cryptoQuotes/man/available_tickers.Rd | 4 cryptoQuotes-1.3.2/cryptoQuotes/man/bollinger_bands.Rd | 4 cryptoQuotes-1.3.2/cryptoQuotes/man/calibrate_window.Rd | 3 cryptoQuotes-1.3.2/cryptoQuotes/man/chart.Rd | 23 cryptoQuotes-1.3.2/cryptoQuotes/man/cryptoQuotes-package.Rd | 4 cryptoQuotes-1.3.2/cryptoQuotes/man/dema.Rd | 6 cryptoQuotes-1.3.2/cryptoQuotes/man/donchian_channel.Rd | 2 cryptoQuotes-1.3.2/cryptoQuotes/man/ema.Rd | 6 cryptoQuotes-1.3.2/cryptoQuotes/man/evwma.Rd | 6 cryptoQuotes-1.3.2/cryptoQuotes/man/fetch.Rd | 2 cryptoQuotes-1.3.2/cryptoQuotes/man/figures/NEWS-unnamed-chunk-2-1.png |binary cryptoQuotes-1.3.2/cryptoQuotes/man/figures/NEWS-unnamed-chunk-3-1.png |only cryptoQuotes-1.3.2/cryptoQuotes/man/figures/NEWS-unnamed-chunk-4-1.png |binary cryptoQuotes-1.3.2/cryptoQuotes/man/figures/NEWS-unnamed-chunk-6-1.png |only cryptoQuotes-1.3.2/cryptoQuotes/man/figures/NEWS-unnamed-chunk-7-1.png |only cryptoQuotes-1.3.2/cryptoQuotes/man/figures/README-chartquote(deficiency)-1.png |binary cryptoQuotes-1.3.2/cryptoQuotes/man/figures/README-chartquote-1.png |binary cryptoQuotes-1.3.2/cryptoQuotes/man/figures/README-unnamed-chunk-1-1.png |only cryptoQuotes-1.3.2/cryptoQuotes/man/figures/README-unnamed-chunk-3-1.png |binary cryptoQuotes-1.3.2/cryptoQuotes/man/get_fgindex.Rd | 2 cryptoQuotes-1.3.2/cryptoQuotes/man/get_fundingrate.Rd | 2 cryptoQuotes-1.3.2/cryptoQuotes/man/get_lsratio.Rd | 2 cryptoQuotes-1.3.2/cryptoQuotes/man/get_openinterest.Rd | 2 cryptoQuotes-1.3.2/cryptoQuotes/man/get_quote.Rd | 2 cryptoQuotes-1.3.2/cryptoQuotes/man/hma.Rd | 6 cryptoQuotes-1.3.2/cryptoQuotes/man/macd.Rd | 2 cryptoQuotes-1.3.2/cryptoQuotes/man/remove_bound.Rd | 3 cryptoQuotes-1.3.2/cryptoQuotes/man/rsi.Rd | 2 cryptoQuotes-1.3.2/cryptoQuotes/man/sma.Rd | 6 cryptoQuotes-1.3.2/cryptoQuotes/man/smi.Rd | 10 cryptoQuotes-1.3.2/cryptoQuotes/man/split_window.Rd | 3 cryptoQuotes-1.3.2/cryptoQuotes/man/vwap.Rd | 6 cryptoQuotes-1.3.2/cryptoQuotes/man/wma.Rd | 6 cryptoQuotes-1.3.2/cryptoQuotes/man/write_xts.Rd |only cryptoQuotes-1.3.2/cryptoQuotes/man/zlema.Rd | 6 cryptoQuotes-1.3.2/cryptoQuotes/tests/testthat/test-CICD.R |only cryptoQuotes-1.3.2/cryptoQuotes/tests/testthat/test-charting.R | 4 cryptoQuotes-1.3.2/cryptoQuotes/tests/testthat/test-getFundingrate.R | 12 cryptoQuotes-1.3.2/cryptoQuotes/tests/testthat/test-getQuote.R | 91 - cryptoQuotes-1.3.2/cryptoQuotes/tests/testthat/test-infer_interval.R | 36 cryptoQuotes-1.3.2/cryptoQuotes/tests/testthat/test-store_xts.R |only cryptoQuotes-1.3.2/cryptoQuotes/vignettes/cryptoQuotes.Rmd | 8 cryptoQuotes-1.3.2/cryptoQuotes/vignettes/custom_indicators.Rmd | 465 +----- cryptoQuotes-1.3.2/cryptoQuotes/vignettes/usecase.Rmd | 12 87 files changed, 2572 insertions(+), 3303 deletions(-)
Title: Visualize Probability Distributions
Description: Visualize and compute percentiles/probabilities of normal, t, f, chi square
and binomial distributions.
Author: Aravind Hebbali [aut, cre]
Maintainer: Aravind Hebbali <hebbali.aravind@gmail.com>
Diff between vistributions versions 0.1.2 dated 2021-05-20 and 0.2.0 dated 2024-11-07
DESCRIPTION | 8 MD5 | 75 +++ NEWS.md | 4 R/vdist-app.R | 2 R/vdist-binomial.R | 133 ------ R/vdist-chisquare.R | 262 ------------- R/vdist-data-prep.R |only R/vdist-f.R | 235 ------------ R/vdist-normal.R | 302 --------------- R/vdist-plots.R |only R/vdist-t.R | 297 --------------- R/vistributions.R | 3 README.md | 19 build/vignette.rds |binary inst/doc/introduction-to-vistributions.R | 2 inst/doc/introduction-to-vistributions.html | 538 ++++++++++++++++++++-------- man/figures/README-normal-1.png |binary man/figures/README-normal-2.png |binary man/figures/README-normal-3.png |binary man/vistributions.Rd | 15 tests/testthat/_snaps |only 21 files changed, 556 insertions(+), 1339 deletions(-)
Title: Tidy Integration of Large Language Models
Description: A tidy interface for integrating large language model (LLM) APIs such as 'Claude', 'Openai', 'Groq','Mistral' and local models via 'Ollama' into R workflows. The package supports text and media-based interactions, interactive message history, batch request APIs, and a tidy, pipeline-oriented interface for streamlined integration into data workflows. Web services are available at <https://www.anthropic.com>, <https://openai.com>, <https://groq.com>, <https://mistral.ai/> and <https://ollama.com>.
Author: Eduard Bruell [aut, cre]
Maintainer: Eduard Bruell <eduard.bruell@zew.de>
Diff between tidyllm versions 0.1.0 dated 2024-10-10 and 0.2.0 dated 2024-11-07
tidyllm-0.1.0/tidyllm/R/api_functions.R |only tidyllm-0.1.0/tidyllm/inst/doc/getting-started.R |only tidyllm-0.1.0/tidyllm/inst/doc/getting-started.Rmd |only tidyllm-0.1.0/tidyllm/inst/doc/getting-started.html |only tidyllm-0.1.0/tidyllm/man/wait_rate_limit.Rd |only tidyllm-0.1.0/tidyllm/tests/testthat/test-llm_message.R |only tidyllm-0.1.0/tidyllm/vignettes/getting-started.Rmd |only tidyllm-0.2.0/tidyllm/DESCRIPTION | 18 tidyllm-0.2.0/tidyllm/LICENSE | 2 tidyllm-0.2.0/tidyllm/MD5 | 123 ++ tidyllm-0.2.0/tidyllm/NAMESPACE | 26 tidyllm-0.2.0/tidyllm/NEWS.md |only tidyllm-0.2.0/tidyllm/R/azure_openai.R |only tidyllm-0.2.0/tidyllm/R/claude.R |only tidyllm-0.2.0/tidyllm/R/groq.R |only tidyllm-0.2.0/tidyllm/R/message_retrieval.R |only tidyllm-0.2.0/tidyllm/R/mistral.R |only tidyllm-0.2.0/tidyllm/R/ollama.R | 355 ++++++++ tidyllm-0.2.0/tidyllm/R/openai.R |only tidyllm-0.2.0/tidyllm/R/pdfbatch.R |only tidyllm-0.2.0/tidyllm/R/perform_api_request.R |only tidyllm-0.2.0/tidyllm/R/rate_limits.R | 134 ++- tidyllm-0.2.0/tidyllm/R/streaming_callback.R | 22 tidyllm-0.2.0/tidyllm/R/tidyllm.R | 413 +++------- tidyllm-0.2.0/tidyllm/R/tidyllm_schema.R |only tidyllm-0.2.0/tidyllm/R/utilites.R | 12 tidyllm-0.2.0/tidyllm/R/zzz.R | 1 tidyllm-0.2.0/tidyllm/README.md |only tidyllm-0.2.0/tidyllm/build/vignette.rds |binary tidyllm-0.2.0/tidyllm/inst/doc/tidyllm.R |only tidyllm-0.2.0/tidyllm/inst/doc/tidyllm.Rmd |only tidyllm-0.2.0/tidyllm/inst/doc/tidyllm.html |only tidyllm-0.2.0/tidyllm/man/LLMMessage.Rd | 50 + tidyllm-0.2.0/tidyllm/man/azure_openai.Rd |only tidyllm-0.2.0/tidyllm/man/chatgpt.Rd | 65 + tidyllm-0.2.0/tidyllm/man/check_claude_batch.Rd |only tidyllm-0.2.0/tidyllm/man/check_openai_batch.Rd |only tidyllm-0.2.0/tidyllm/man/claude.Rd | 59 - tidyllm-0.2.0/tidyllm/man/df_llm_message.Rd | 13 tidyllm-0.2.0/tidyllm/man/fetch_claude_batch.Rd |only tidyllm-0.2.0/tidyllm/man/fetch_openai_batch.Rd |only tidyllm-0.2.0/tidyllm/man/figures |only tidyllm-0.2.0/tidyllm/man/generate_callback_function.Rd | 6 tidyllm-0.2.0/tidyllm/man/get_reply.Rd |only tidyllm-0.2.0/tidyllm/man/get_reply_data.Rd |only tidyllm-0.2.0/tidyllm/man/get_user_message.Rd |only tidyllm-0.2.0/tidyllm/man/groq.Rd | 62 + tidyllm-0.2.0/tidyllm/man/groq_transcribe.Rd |only tidyllm-0.2.0/tidyllm/man/last_reply.Rd | 25 tidyllm-0.2.0/tidyllm/man/last_reply_data.Rd |only tidyllm-0.2.0/tidyllm/man/last_user_message.Rd |only tidyllm-0.2.0/tidyllm/man/list_claude_batches.Rd |only tidyllm-0.2.0/tidyllm/man/list_openai_batches.Rd |only tidyllm-0.2.0/tidyllm/man/llm_message.Rd | 5 tidyllm-0.2.0/tidyllm/man/mistral.Rd |only tidyllm-0.2.0/tidyllm/man/mistral_embedding.Rd |only tidyllm-0.2.0/tidyllm/man/ollama.Rd | 95 +- tidyllm-0.2.0/tidyllm/man/ollama_download_model.Rd |only tidyllm-0.2.0/tidyllm/man/ollama_embedding.Rd |only tidyllm-0.2.0/tidyllm/man/ollama_list_models.Rd | 2 tidyllm-0.2.0/tidyllm/man/openai.Rd |only tidyllm-0.2.0/tidyllm/man/openai_embedding.Rd |only tidyllm-0.2.0/tidyllm/man/parse_duration_to_seconds.Rd | 2 tidyllm-0.2.0/tidyllm/man/pdf_page_batch.Rd |only tidyllm-0.2.0/tidyllm/man/perform_api_request.Rd | 16 tidyllm-0.2.0/tidyllm/man/rate_limit_info.Rd | 2 tidyllm-0.2.0/tidyllm/man/ratelimit_from_header.Rd |only tidyllm-0.2.0/tidyllm/man/send_claude_batch.Rd |only tidyllm-0.2.0/tidyllm/man/send_openai_batch.Rd |only tidyllm-0.2.0/tidyllm/man/tidyllm-package.Rd | 12 tidyllm-0.2.0/tidyllm/man/tidyllm_schema.Rd |only tidyllm-0.2.0/tidyllm/tests/testthat/claude |only tidyllm-0.2.0/tidyllm/tests/testthat/groq |only tidyllm-0.2.0/tidyllm/tests/testthat/mistral |only tidyllm-0.2.0/tidyllm/tests/testthat/mistral_embedding |only tidyllm-0.2.0/tidyllm/tests/testthat/ollama |only tidyllm-0.2.0/tidyllm/tests/testthat/ollama_embedding |only tidyllm-0.2.0/tidyllm/tests/testthat/openai |only tidyllm-0.2.0/tidyllm/tests/testthat/openai_embedding |only tidyllm-0.2.0/tidyllm/tests/testthat/pdf-sample_150kB.pdf |only tidyllm-0.2.0/tidyllm/tests/testthat/test_claude.R |only tidyllm-0.2.0/tidyllm/tests/testthat/test_groq.R |only tidyllm-0.2.0/tidyllm/tests/testthat/test_llm_message.R |only tidyllm-0.2.0/tidyllm/tests/testthat/test_message_retrieval.R |only tidyllm-0.2.0/tidyllm/tests/testthat/test_mistral.R |only tidyllm-0.2.0/tidyllm/tests/testthat/test_ollama.R |only tidyllm-0.2.0/tidyllm/tests/testthat/test_openai.R |only tidyllm-0.2.0/tidyllm/tests/testthat/test_pdf_page_batch.R |only tidyllm-0.2.0/tidyllm/vignettes/die_verwandlung.pdf |only tidyllm-0.2.0/tidyllm/vignettes/file1568f6c1b4565.png |only tidyllm-0.2.0/tidyllm/vignettes/getting-started |only tidyllm-0.2.0/tidyllm/vignettes/picture.jpeg |only tidyllm-0.2.0/tidyllm/vignettes/tidyllm.Rmd |only 93 files changed, 1049 insertions(+), 471 deletions(-)
Title: Hybrid FA-CFA for Controlling Acquiescence in Restricted
Factorial Solutions
Description: Performs hybrid multi-stage factor analytic procedure for controlling acquiescence in restricted solutions (Ferrando & Lorenzo-Seva, 2000 <https://www.uv.es/revispsi/articulos3.00/ferran7.pdf>).
Author: David Navarro-Gonzalez [aut, cre],
Pere J. Ferrando [aut],
Fabia Morales-Vives [aut],
Ana Hernandez-Dorado [aut]
Maintainer: David Navarro-Gonzalez <david.navarro@udl.cat>
Diff between siren versions 1.0.4 dated 2023-10-25 and 1.0.5 dated 2024-11-07
DESCRIPTION | 14 ++++++++------ MD5 | 11 ++++++++--- build/partial.rdb |binary build/vignette.rds |only data/psymas.rda |binary inst |only vignettes |only 7 files changed, 16 insertions(+), 9 deletions(-)
Title: R Interface to SDMX Web Services
Description: Provides functions to retrieve data and metadata from providers
that disseminate data by means of SDMX web services.
SDMX (Statistical Data and Metadata eXchange) is a standard that
has been developed with the aim of simplifying the exchange of
statistical information.
More about the SDMX standard and the SDMX Web Services
can be found at: <https://sdmx.org>.
Author: Attilio Mattiocco [aut, cre]
Maintainer: Attilio Mattiocco <attilio.mattiocco@bancaditalia.it>
Diff between RJSDMX versions 3.4-0 dated 2024-09-13 and 3.5-0 dated 2024-11-07
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/SdmxClient.R | 5 +++-- R/test_automation/test.sdmx.r | 8 +++++++- inst/java/SDMX.jar |binary man/addProvider.Rd | 6 +++++- 6 files changed, 23 insertions(+), 12 deletions(-)
Title: Graphical Evidence
Description: Computes marginal likelihood in Gaussian graphical models through a
novel telescoping block decomposition of the precision matrix which allows
estimation of model evidence. The top level function used to estimate marginal
likelihood is called evidence(), which expects the prior name, data, and
relevant prior specific parameters. This package also provides an MCMC prior
sampler using the same underlying approach, implemented in prior_sampling(),
which expects a prior name and prior specific parameters. Both functions also
expect the number of burn-in iterations and the number of sampling iterations
for the underlying MCMC sampler.
Author: David Rowe [aut, cre]
Maintainer: David Rowe <david@rowe-stats.com>
Diff between graphicalEvidence versions 1.0 dated 2024-10-25 and 1.1 dated 2024-11-07
DESCRIPTION | 12 ++++++------ MD5 | 14 +++++++------- R/prior_sampling.R | 2 +- README.md | 12 ++++++++++-- man/graphicalEvidence-package.Rd | 4 ++-- man/prior_sampling.Rd | 2 +- src/initialize_indices.cpp | 23 +++++++++++++++-------- src/update_sigma_inplace.cpp | 2 +- 8 files changed, 43 insertions(+), 28 deletions(-)
More information about graphicalEvidence at CRAN
Permanent link
Title: Analysis of Differential Behaviour of SPARRA Score Across
Demographic Groups
Description: The SPARRA risk score (Scottish Patients At Risk of admission and Re-Admission) estimates yearly risk of emergency hospital admission using electronic health records on a monthly basis for most of the Scottish population. This package implements a suite of functions used to analyse the behaviour and performance of the score, focusing particularly on differential performance over demographically-defined groups. It includes useful utility functions to plot receiver-operator-characteristic, precision-recall and calibration curves, draw stock human figures, estimate counterfactual quantities without the need to re-compute risk scores, to simulate a semi-realistic dataset.
Author: Ioanna Thoma [aut] ,
Catalina Vallejos [ctb] ,
Louis Aslett [ctb] ,
Jill Ireland [ctb] ,
Simon Rogers [ctb] ,
James Liley [cre, aut]
Maintainer: James Liley <james.liley@durham.ac.uk>
Diff between SPARRAfairness versions 0.0.0.1 dated 2023-04-20 and 0.0.0.2 dated 2024-11-07
DESCRIPTION | 12 MD5 | 40 - NAMESPACE | 5 NEWS.md | 6 R/SPARRAfairness_functions.R | 954 +++++++++++++++++++++-------------- R/SPARRAfairness_init.R | 12 build/vignette.rds |binary data/all_data.RData |binary data/decomposition_matrix.RData |binary inst/doc/SPARRAfairness_example.R | 23 inst/doc/SPARRAfairness_example.Rmd | 43 + inst/doc/SPARRAfairness_example.html | 621 ++++++++-------------- man/all_data.Rd | 2 man/build_diff.Rd |only man/cal_2panel.Rd | 17 man/counterfactual_yhat.Rd | 62 +- man/for_breakdown.Rd |only man/groupmetric_2panel.Rd | 20 man/plot_decomp.Rd | 15 man/prc_2panel.Rd | 16 man/roc_2panel.Rd | 21 vignettes/SPARRAfairness_example.Rmd | 43 + 22 files changed, 1032 insertions(+), 880 deletions(-)
More information about SPARRAfairness at CRAN
Permanent link
Title: Hierarchical and Geographically Weighted Regression
Description: This model divides coefficients into three types,
i.e., local fixed effects, global fixed effects, and random effects (Hu et al., 2022)<doi:10.1177/23998083211063885>.
If data have spatial hierarchical structures (especially are overlapping on some locations),
it is worth trying this model to reach better fitness.
Author: Yigong Hu [aut, cre],
Richard Harris [aut],
Richard Timmerman [aut]
Maintainer: Yigong Hu <yigong.hu@bristol.ac.uk>
Diff between hgwrr versions 0.5-0 dated 2024-07-28 and 0.6-0 dated 2024-11-07
hgwrr-0.5-0/hgwrr/R/make.dummy.R |only hgwrr-0.5-0/hgwrr/R/parse.formula.R |only hgwrr-0.5-0/hgwrr/data/multisampling.large.rda |only hgwrr-0.5-0/hgwrr/man/make.dummy.Rd |only hgwrr-0.5-0/hgwrr/man/multisampling.large.Rd |only hgwrr-0.5-0/hgwrr/man/print.shgt.Rd |only hgwrr-0.5-0/hgwrr/man/print.table.md.Rd |only hgwrr-0.6-0/hgwrr/DESCRIPTION | 26 hgwrr-0.6-0/hgwrr/MD5 | 81 - hgwrr-0.6-0/hgwrr/NAMESPACE | 26 hgwrr-0.6-0/hgwrr/NEWS.md | 19 hgwrr-0.6-0/hgwrr/R/RcppExports.R | 8 hgwrr-0.6-0/hgwrr/R/hetero.R | 340 ++++- hgwrr-0.6-0/hgwrr/R/hgwr.R | 1114 ++++++++--------- hgwrr-0.6-0/hgwrr/R/hgwrr-package.R | 7 hgwrr-0.6-0/hgwrr/R/make_dummy.R |only hgwrr-0.6-0/hgwrr/R/parse_formula.R |only hgwrr-0.6-0/hgwrr/R/utils.R | 248 ++- hgwrr-0.6-0/hgwrr/build/partial.rdb |binary hgwrr-0.6-0/hgwrr/data/datalist | 2 hgwrr-0.6-0/hgwrr/data/mulsam.test.rda |only hgwrr-0.6-0/hgwrr/data/multisampling.rda |binary hgwrr-0.6-0/hgwrr/inst/doc/hgwrr.R | 6 hgwrr-0.6-0/hgwrr/inst/doc/hgwrr.Rmd | 6 hgwrr-0.6-0/hgwrr/inst/doc/hgwrr.html | 183 +- hgwrr-0.6-0/hgwrr/man/hgwr.Rd | 99 + hgwrr-0.6-0/hgwrr/man/hgwrr-package.Rd | 3 hgwrr-0.6-0/hgwrr/man/make_dummy.Rd |only hgwrr-0.6-0/hgwrr/man/mulsam.test.Rd |only hgwrr-0.6-0/hgwrr/man/multisampling.Rd | 12 hgwrr-0.6-0/hgwrr/man/print.hgwrm.Rd | 39 hgwrr-0.6-0/hgwrr/man/print.spahetbootres.Rd |only hgwrr-0.6-0/hgwrr/man/print.summary.hgwrm.Rd | 39 hgwrr-0.6-0/hgwrr/man/print_table_md.Rd |only hgwrr-0.6-0/hgwrr/man/spatial_hetero_test.Rd | 89 - hgwrr-0.6-0/hgwrr/man/spatial_hetero_test_data.Rd |only hgwrr-0.6-0/hgwrr/man/summary.hgwrm.Rd | 15 hgwrr-0.6-0/hgwrr/src/RcppExports.cpp | 19 hgwrr-0.6-0/hgwrr/src/hetero_test.cpp | 10 hgwrr-0.6-0/hgwrr/src/hgwr.cpp | 14 hgwrr-0.6-0/hgwrr/src/libhgwr/include/hlmgwr.h | 34 hgwrr-0.6-0/hgwrr/src/libhgwr/src/hlmgwr.cpp | 177 ++ hgwrr-0.6-0/hgwrr/src/utils.h | 5 hgwrr-0.6-0/hgwrr/tests/others/multisampling_large.R | 12 hgwrr-0.6-0/hgwrr/tests/others/only_random_intercept.R |only hgwrr-0.6-0/hgwrr/tests/others/wuhan_hp.R |only hgwrr-0.6-0/hgwrr/tests/testthat/test-hetero.R | 59 hgwrr-0.6-0/hgwrr/tests/testthat/test-hgwr.R | 189 ++ hgwrr-0.6-0/hgwrr/tests/testthat/test-make.dummy.R | 13 hgwrr-0.6-0/hgwrr/vignettes/hgwrr.Rmd | 6 50 files changed, 1861 insertions(+), 1039 deletions(-)
Title: Japanese Utility Functions and Data
Description: Some data treated by the Japanese R user require
unique operations and processing. These are caused by address, Kanji,
and traditional year representations. 'zipangu' transforms specific
to Japan into something more general one.
Author: Shinya Uryu [aut, cre] ,
Hiroaki Yutani [ctb] ,
Kazuhiro Maeda [ctb],
Mao Kobayashi [ctb],
Akiru Kato [ctb]
Maintainer: Shinya Uryu <suika1127@gmail.com>
Diff between zipangu versions 0.3.2 dated 2022-12-09 and 0.3.3 dated 2024-11-07
zipangu-0.3.2/zipangu/build/zipangu.pdf |only zipangu-0.3.3/zipangu/DESCRIPTION | 10 ++++----- zipangu-0.3.3/zipangu/MD5 | 24 +++++++++++----------- zipangu-0.3.3/zipangu/NEWS.md | 6 +++++ zipangu-0.3.3/zipangu/R/convert-jyear-legacy.R | 5 +--- zipangu-0.3.3/zipangu/R/jholiday.R | 2 - zipangu-0.3.3/zipangu/R/kana.R | 3 -- zipangu-0.3.3/zipangu/R/label-kansuji.R | 2 - zipangu-0.3.3/zipangu/README.md | 15 ++++++------- zipangu-0.3.3/zipangu/build/stage23.rdb |only zipangu-0.3.3/zipangu/man/jholiday.Rd | 2 - zipangu-0.3.3/zipangu/man/kana.Rd | 6 ----- zipangu-0.3.3/zipangu/man/label_kansuji.Rd | 2 - zipangu-0.3.3/zipangu/tests/testthat/test-jyear.R | 10 +++++++++ 14 files changed, 48 insertions(+), 39 deletions(-)
Title: Analysis of Spatial Stratified Heterogeneity
Description: Analyzing spatial factors and exploring spatial associations based on the concept of spatial
stratified heterogeneity, and also takes into account local spatial dependencies, spatial
interpretability, potential spatial interactions, and robust spatial stratification. Additionally,
it supports geographical detector models established in academic literature.
Author: Wenbo Lv [aut, cre, cph] ,
Yangyang Lei [aut] ,
Fangmei Liu [aut] ,
Wufan Zhao [aut] ,
Yongze Song [aut] ,
Jianwu Yan [aut]
Maintainer: Wenbo Lv <lyu.geosocial@gmail.com>
Diff between gdverse versions 1.1-1 dated 2024-10-17 and 1.2 dated 2024-11-07
gdverse-1.1-1/gdverse/man/figures/idsa/idsa_map-1.png |only gdverse-1.2/gdverse/DESCRIPTION | 6 gdverse-1.2/gdverse/MD5 | 128 - gdverse-1.2/gdverse/NAMESPACE | 4 gdverse-1.2/gdverse/NEWS.md | 15 gdverse-1.2/gdverse/R/gd.R | 183 +- gdverse-1.2/gdverse/R/gd_bestunidisc.R | 191 +- gdverse-1.2/gdverse/R/geodetector.R | 1148 ++++++------- gdverse-1.2/gdverse/R/globals.R | 30 gdverse-1.2/gdverse/R/gozh.R | 469 ++--- gdverse-1.2/gdverse/R/idsa.R | 416 ++-- gdverse-1.2/gdverse/R/isp.R |only gdverse-1.2/gdverse/R/lesh.R | 385 ++-- gdverse-1.2/gdverse/R/opgd.R | 263 +-- gdverse-1.2/gdverse/R/r_interact_py.R | 82 gdverse-1.2/gdverse/R/rgd.R | 239 +- gdverse-1.2/gdverse/R/rid.R | 236 +- gdverse-1.2/gdverse/R/sesu_gozh.R | 386 ++-- gdverse-1.2/gdverse/R/sesu_opgd.R | 370 ++-- gdverse-1.2/gdverse/R/spade.R | 329 +-- gdverse-1.2/gdverse/R/srs_geodetecor.R | 751 ++++---- gdverse-1.2/gdverse/R/srsgd.R | 198 +- gdverse-1.2/gdverse/README.md | 30 gdverse-1.2/gdverse/build/vignette.rds |binary gdverse-1.2/gdverse/inst/doc/idsa.Rmd | 216 +- gdverse-1.2/gdverse/inst/doc/idsa.html | 45 gdverse-1.2/gdverse/inst/doc/opgd.Rmd | 414 ++-- gdverse-1.2/gdverse/inst/doc/opgd.html | 12 gdverse-1.2/gdverse/inst/doc/rgdrid.Rmd | 217 +- gdverse-1.2/gdverse/inst/doc/rgdrid.html | 65 gdverse-1.2/gdverse/inst/doc/sesu.Rmd | 1270 +++++++-------- gdverse-1.2/gdverse/inst/doc/sesu.html | 228 +- gdverse-1.2/gdverse/inst/doc/shegd.Rmd | 387 ++-- gdverse-1.2/gdverse/inst/doc/shegd.html | 10 gdverse-1.2/gdverse/inst/doc/spade.Rmd | 444 ++--- gdverse-1.2/gdverse/inst/doc/spade.html | 82 gdverse-1.2/gdverse/inst/python/__pycache__ |only gdverse-1.2/gdverse/inst/python/cpd_disc.py | 112 - gdverse-1.2/gdverse/man/figures/gdverse_funs.png |binary gdverse-1.2/gdverse/man/figures/idsa/idsa_modeling-1.png |binary gdverse-1.2/gdverse/man/figures/rgdrid/rgd_id-1.png |binary gdverse-1.2/gdverse/man/figures/rgdrid/rid_plot-1.png |only gdverse-1.2/gdverse/man/figures/sesu/opgd-1.png |binary gdverse-1.2/gdverse/man/figures/spade/spade-1.png |binary gdverse-1.2/gdverse/man/gd_bestunidisc.Rd | 9 gdverse-1.2/gdverse/man/gozh.Rd | 2 gdverse-1.2/gdverse/man/idsa.Rd | 9 gdverse-1.2/gdverse/man/isp.Rd |only gdverse-1.2/gdverse/man/lesh.Rd | 2 gdverse-1.2/gdverse/man/opgd.Rd | 11 gdverse-1.2/gdverse/man/plot.isp_result.Rd |only gdverse-1.2/gdverse/man/plot.rid_result.Rd |only gdverse-1.2/gdverse/man/print.isp_result.Rd |only gdverse-1.2/gdverse/man/rgd.Rd | 15 gdverse-1.2/gdverse/man/rid.Rd | 22 gdverse-1.2/gdverse/man/sesu_opgd.Rd | 4 gdverse-1.2/gdverse/man/spade.Rd | 6 gdverse-1.2/gdverse/man/srsgd.Rd | 2 gdverse-1.2/gdverse/tests/testthat/test-data_type.R |only gdverse-1.2/gdverse/tests/testthat/test-multicores.R |only gdverse-1.2/gdverse/vignettes/idsa.Rmd | 216 +- gdverse-1.2/gdverse/vignettes/idsa.Rmd.orig | 123 - gdverse-1.2/gdverse/vignettes/opgd.Rmd | 414 ++-- gdverse-1.2/gdverse/vignettes/opgd.Rmd.orig | 160 - gdverse-1.2/gdverse/vignettes/rgdrid.Rmd | 217 +- gdverse-1.2/gdverse/vignettes/rgdrid.Rmd.orig | 160 - gdverse-1.2/gdverse/vignettes/sesu.Rmd | 1270 +++++++-------- gdverse-1.2/gdverse/vignettes/shegd.Rmd | 387 ++-- gdverse-1.2/gdverse/vignettes/shegd.Rmd.orig | 187 +- gdverse-1.2/gdverse/vignettes/spade.Rmd | 444 ++--- 70 files changed, 6516 insertions(+), 6505 deletions(-)