Title: A General-Purpose Package for Dynamic Report Generation in R
Description: Provides a general-purpose tool for dynamic report generation in R
using Literate Programming techniques.
Author: Yihui Xie [aut, cre] ,
Abhraneel Sarma [ctb],
Adam Vogt [ctb],
Alastair Andrew [ctb],
Alex Zvoleff [ctb],
Amar Al-Zubaidi [ctb],
Andre Simon [ctb] ,
Aron Atkins [ctb],
Aaron Wolen [ctb],
Ashley Manton [ctb],
Atsushi Yasumoto [ctb] ,
Ben Baumer [ctb], [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between knitr versions 1.48 dated 2024-07-07 and 1.49 dated 2024-11-08
knitr-1.48/knitr/inst/doc/knitr-refcard.pdf |only knitr-1.48/knitr/vignettes/assets |only knitr-1.49/knitr/.Rinstignore | 1 knitr-1.49/knitr/DESCRIPTION | 21 knitr-1.49/knitr/MD5 | 102 - knitr-1.49/knitr/NAMESPACE | 1 knitr-1.49/knitr/R/block.R | 20 knitr-1.49/knitr/R/cache.R | 4 knitr-1.49/knitr/R/highlight.R | 2 knitr-1.49/knitr/R/hooks-asciidoc.R | 4 knitr-1.49/knitr/R/hooks-extra.R | 6 knitr-1.49/knitr/R/hooks-html.R | 5 knitr-1.49/knitr/R/hooks-latex.R | 7 knitr-1.49/knitr/R/hooks-md.R | 10 knitr-1.49/knitr/R/hooks-rst.R | 4 knitr-1.49/knitr/R/hooks-textile.R | 1 knitr-1.49/knitr/R/output.R | 12 knitr-1.49/knitr/R/package.R | 2 knitr-1.49/knitr/R/parser.R | 17 knitr-1.49/knitr/R/plot.R | 32 knitr-1.49/knitr/R/table.R | 4 knitr-1.49/knitr/R/utils.R | 40 knitr-1.49/knitr/R/zzz.R | 2 knitr-1.49/knitr/build/vignette.rds |binary knitr-1.49/knitr/inst/CITATION | 2 knitr-1.49/knitr/inst/doc/datatables.R |only knitr-1.49/knitr/inst/doc/datatables.Rmd | 21 knitr-1.49/knitr/inst/doc/datatables.html | 1222 ++++++++++++----------- knitr-1.49/knitr/inst/doc/docco-classic.html | 6 knitr-1.49/knitr/inst/doc/docco-linear.html | 2 knitr-1.49/knitr/inst/doc/knit_expand.R |only knitr-1.49/knitr/inst/doc/knit_expand.Rmd | 20 knitr-1.49/knitr/inst/doc/knit_expand.html | 203 +-- knitr-1.49/knitr/inst/doc/knit_print.Rmd | 4 knitr-1.49/knitr/inst/doc/knit_print.html | 180 ++- knitr-1.49/knitr/inst/doc/knitr-html.html | 28 knitr-1.49/knitr/inst/doc/knitr-intro.R |only knitr-1.49/knitr/inst/doc/knitr-intro.Rmd | 21 knitr-1.49/knitr/inst/doc/knitr-intro.html | 47 knitr-1.49/knitr/inst/doc/knitr-markdown.R |only knitr-1.49/knitr/inst/doc/knitr-markdown.Rmd | 12 knitr-1.49/knitr/inst/doc/knitr-markdown.html | 185 --- knitr-1.49/knitr/inst/doc/knitr-refcard.Rmd | 169 ++- knitr-1.49/knitr/inst/doc/knitr-refcard.html |only knitr-1.49/knitr/man/knit_global.Rd | 19 knitr-1.49/knitr/tests/testit/test-cache.R | 79 + knitr-1.49/knitr/tests/testit/test-hooks-latex.R |only knitr-1.49/knitr/tests/testit/test-parser.R | 5 knitr-1.49/knitr/tests/testit/test-plot.R | 2 knitr-1.49/knitr/tests/testit/test-table.R | 2 knitr-1.49/knitr/tests/testit/test-utils.R | 4 knitr-1.49/knitr/vignettes/datatables.Rmd | 21 knitr-1.49/knitr/vignettes/knit_expand.Rmd | 20 knitr-1.49/knitr/vignettes/knit_print.Rmd | 4 knitr-1.49/knitr/vignettes/knitr-intro.Rmd | 21 knitr-1.49/knitr/vignettes/knitr-markdown.Rmd | 12 knitr-1.49/knitr/vignettes/knitr-refcard.Rmd | 169 ++- 57 files changed, 1482 insertions(+), 1295 deletions(-)
Title: Multivariate Data Analysis
Description: Simple Principal Components Analysis (PCA) and (Multiple)
Correspondence Analysis (CA) based on the Singular Value Decomposition
(SVD). This package provides S4 classes and methods to compute,
extract, summarize and visualize results of multivariate data
analysis. It also includes methods for partial bootstrap validation
described in Greenacre (1984, ISBN: 978-0-12-299050-2) and Lebart et
al. (2006, ISBN: 978-2-10-049616-7).
Author: Nicolas Frerebeau [aut, cre] ,
Jean-Baptiste Fourvel [ctb] ,
Brice Lebrun [ctb] ,
Universite Bordeaux Montaigne [fnd],
CNRS [fnd]
Maintainer: Nicolas Frerebeau <nicolas.frerebeau@u-bordeaux-montaigne.fr>
Diff between dimensio versions 0.9.0 dated 2024-08-26 and 0.10.0 dated 2024-11-08
DESCRIPTION | 22 ++--- MD5 | 100 ++++++++++++++------------- NAMESPACE | 1 NEWS.md | 9 ++ R/AllClasses.R | 3 R/AllGenerics.R | 24 ++++++ R/annotations.R | 9 +- R/augment.R | 4 - R/biplot.R | 20 ----- R/bootstrap.R | 4 + R/ca.R | 19 ++--- R/dimensio-internal.R | 6 - R/dimensio-package.R | 2 R/export.R |only R/get_contributions.R | 3 R/get_coordinates.R | 5 + R/get_correlations.R | 2 R/get_cos2.R | 3 R/get_distances.R | 2 R/get_inertia.R | 2 R/mca.R | 2 R/pca.R | 11 +- R/pcoa.R | 3 R/plot.R | 4 + R/viz_coordinates.R | 23 +++++- R/viz_ellipse.R | 55 +++++++++----- R/viz_hull.R | 36 +++++---- R/wrap_ellipses.R | 10 ++ R/wrap_hull.R | 5 + README.md | 4 - inst/doc/pca.R | 4 - inst/doc/pca.Rmd | 4 - inst/doc/pca.html | 16 ++-- inst/examples/ex-envelopes.R | 4 - inst/examples/ex-export.R |only inst/po |only inst/tinytest/_tinysnapshot/CA_boot_col.svg | 8 +- inst/tinytest/_tinysnapshot/CA_boot_row.svg | 8 +- inst/tinytest/_tinysnapshot/PCA_boot_col.svg | 16 ++-- inst/tinytest/test_pca.R | 2 man/PCOA-class.Rd | 3 man/dimensio-package.Rd | 2 man/export.Rd |only man/figures/README-biplot-1.png |binary man/figures/README-plot-var-1.png |binary man/get_contributions.Rd | 1 man/get_coordinates.Rd | 1 man/get_data.Rd | 1 man/get_eigenvalues.Rd | 1 man/viz_labels.Rd | 3 man/viz_wrap.Rd | 90 ++++++++++++++++++++---- po |only vignettes/pca.Rmd | 4 - 53 files changed, 371 insertions(+), 190 deletions(-)
Title: Tools for Descriptive Statistics
Description: A collection of miscellaneous basic statistic functions and convenience wrappers for efficiently describing data. The author's intention was to create a toolbox, which facilitates the (notoriously time consuming) first descriptive tasks in data analysis, consisting of calculating descriptive statistics, drawing graphical summaries and reporting the results. The package contains furthermore functions to produce documents using MS Word (or PowerPoint) and functions to import data from Excel. Many of the included functions can be found scattered in other packages and other sources written partly by Titans of R. The reason for collecting them here, was primarily to have them consolidated in ONE instead of dozens of packages (which themselves might depend on other packages which are not needed at all), and to provide a common and consistent interface as far as function and arguments naming, NA handling, recycling rules etc. are concerned. Google style guides were used as naming rules (in ab [...truncated...]
Author: Andri Signorell [aut, cre] ,
Ken Aho [ctb],
Andreas Alfons [ctb],
Nanina Anderegg [ctb],
Tomas Aragon [ctb],
Chandima Arachchige [ctb],
Antti Arppe [ctb],
Adrian Baddeley [ctb],
Kamil Barton [ctb],
Ben Bolker [ctb],
Hans W. Borchers [ctb],
Frederico [...truncated...]
Maintainer: Andri Signorell <andri@signorell.net>
Diff between DescTools versions 0.99.57 dated 2024-09-25 and 0.99.58 dated 2024-11-08
DESCRIPTION | 17 +++--- MD5 | 12 ++-- NAMESPACE | 6 +- NEWS | 18 ++++++ R/DescTools.r | 140 +++++++++++++++++++++++++++----------------------- R/Mod_BrierScore.R | 9 ++- man/AppendRowNames.Rd |only man/ReadSPSS.Rd |only 8 files changed, 122 insertions(+), 80 deletions(-)
Title: Generate Descriptive Statistics
Description: Generate descriptive statistics such as measures of location,
dispersion, frequency tables, cross tables, group summaries and multiple
one/two way tables.
Author: Aravind Hebbali [aut, cre]
Maintainer: Aravind Hebbali <hebbali.aravind@gmail.com>
Diff between descriptr versions 0.5.2 dated 2020-12-09 and 0.6.0 dated 2024-11-08
DESCRIPTION | 15 MD5 | 195 ++-- NAMESPACE | 7 NEWS.md | 19 R/ds-auto-summary.R | 22 R/ds-cross-table.R | 126 +- R/ds-describe.R | 700 ++++++++++----- R/ds-descriptr.R | 14 R/ds-freq-factor.R | 37 R/ds-freq-mult.R | 20 R/ds-freq-numeric.R | 71 - R/ds-freq-table.R | 30 R/ds-group-summary-interact.R | 18 R/ds-group-summary.R | 58 - R/ds-mult-table.R | 33 R/ds-multistats.R | 16 R/ds-output.R | 79 - R/ds-plots.R | 161 +-- R/ds-screener.R | 14 R/ds-summary-stats.R | 147 +-- R/ds-utils.R | 93 +- R/zzz.R | 12 README.md | 49 - build/vignette.rds |binary inst/doc/categorical-data.R | 2 inst/doc/categorical-data.html | 709 +++++++--------- inst/doc/continuous-data.R | 2 inst/doc/continuous-data.html | 1191 +++++++++++++-------------- inst/doc/visualization.R | 2 inst/doc/visualization.html | 270 ++---- man/descriptr.Rd | 16 man/ds_auto_freq_table.Rd | 11 man/ds_auto_group_summary.Rd | 1 man/ds_auto_summary_stats.Rd | 3 man/ds_cross_table.Rd | 19 man/ds_css.Rd | 14 man/ds_cvar.Rd | 14 man/ds_extreme_obs.Rd | 15 man/ds_freq_table.Rd | 4 man/ds_gmean.Rd | 16 man/ds_group_summary.Rd | 6 man/ds_group_summary_interact.Rd | 4 man/ds_hmean.Rd | 16 man/ds_kurtosis.Rd | 14 man/ds_mdev.Rd | 14 man/ds_measures_location.Rd | 28 man/ds_measures_symmetry.Rd | 21 man/ds_measures_variation.Rd | 21 man/ds_mode.Rd | 12 man/ds_percentiles.Rd | 21 man/ds_plot_bar.Rd | 7 man/ds_plot_bar_grouped.Rd | 7 man/ds_plot_bar_stacked.Rd | 7 man/ds_plot_box_group.Rd | 7 man/ds_plot_box_single.Rd | 7 man/ds_plot_density.Rd | 7 man/ds_plot_histogram.Rd | 7 man/ds_plot_scatter.Rd | 5 man/ds_range.Rd | 14 man/ds_rindex.Rd | 4 man/ds_skewness.Rd | 14 man/ds_summary_stats.Rd | 12 man/ds_tailobs.Rd | 17 man/ds_tidy_stats.Rd | 3 tests/testthat.R | 16 tests/testthat/_snaps |only tests/testthat/test-auto-summary.R | 147 --- tests/testthat/test-cross-table.R | 65 - tests/testthat/test-describe.R | 120 +- tests/testthat/test-freq-table.R | 62 - tests/testthat/test-group-summary-interact.R | 2 tests/testthat/test-group-summary.R | 14 tests/testthat/test-multistats.R | 24 tests/testthat/test-output.R | 290 ------ tests/testthat/test-plots.R | 85 + tests/testthat/test-screen.R | 16 tests/testthat/test-summary-stats.R | 18 tests/testthat/test-utils.R | 38 78 files changed, 2814 insertions(+), 2583 deletions(-)
Title: Multivariate Normal Mean Monitoring Through Critical-to-X
Control Chart
Description: A comprehensive set of functions designed for multivariate mean monitoring using the Critical-to-X Control Chart. These functions enable the determination of optimal control limits based on a specified in-control Average Run Length (ARL), the calculation of out-of-control ARL for a given control limit, and post-signal analysis to identify the specific variable responsible for a detected shift in the mean. This suite of tools provides robust support for precise and effective process monitoring and analysis.
Author: Dr. Burcu Aytacoglu [aut] ,
Dr. Diana Barraza-Barraza [aut, cre] ,
Dr. Victor G. Tercero-Gomez [aut] ,
Dr. A. Eduardo Cordero-Franco [aut]
Maintainer: Dr. Diana Barraza-Barraza <diana.barraza@ujed.mx>
Diff between CTxCC versions 0.1.0 dated 2024-10-25 and 0.2.0 dated 2024-11-08
DESCRIPTION | 8 +++++--- MD5 | 4 ++-- R/Functions.R | 6 ------ 3 files changed, 7 insertions(+), 11 deletions(-)
Title: Interactive Biplots in R
Description: Provides a GUI with which users can construct and interact
with biplots.
Author: Anthony la Grange [aut],
Niel le Roux [cre]
Maintainer: Niel le Roux <njlr@sun.ac.za>
Diff between BiplotGUI versions 0.0-7 dated 2013-03-19 and 0.0-12 dated 2024-11-08
BiplotGUI-0.0-12/BiplotGUI/DESCRIPTION | 30 - BiplotGUI-0.0-12/BiplotGUI/LICENSE |only BiplotGUI-0.0-12/BiplotGUI/MD5 | 15 BiplotGUI-0.0-12/BiplotGUI/NAMESPACE | 53 + BiplotGUI-0.0-12/BiplotGUI/R/Biplots.R | 48 + BiplotGUI-0.0-12/BiplotGUI/inst/CITATION | 32 - BiplotGUI-0.0-12/BiplotGUI/man/FighterAircraft.Rd | 78 +- BiplotGUI-0.0-12/BiplotGUI/src/abagplot.f | 429 ++++++++-------- BiplotGUI-0.0-12/BiplotGUI/src/registerDynamicSymbols.c |only BiplotGUI-0.0-7/BiplotGUI/inst/doc |only 10 files changed, 378 insertions(+), 307 deletions(-)
Title: Bayesian Fertility Projection
Description: Making probabilistic projections of total fertility rate for all countries of the world, using a Bayesian hierarchical model <doi:10.1007/s13524-011-0040-5> <doi:10.18637/jss.v106.i08>. Subnational probabilistic projections are also supported <doi:10.4054/DemRes.2018.38.60>.
Author: Hana Sevcikova [cre, aut],
Leontine Alkema [aut],
Peiran Liu [aut],
Adrian Raftery [aut],
Bailey Fosdick [aut],
Patrick Gerland [aut]
Maintainer: Hana Sevcikova <hanas@uw.edu>
Diff between bayesTFR versions 7.4-2 dated 2023-10-18 and 7.4-4 dated 2024-11-08
ChangeLog | 20 ++++++ DESCRIPTION | 40 +++++++++++-- MD5 | 47 ++++++++------- NAMESPACE | 2 R/get_outputs.R | 27 +++++++-- R/mcmc_ini.R | 6 +- R/plot_functions.R | 119 ++++++++++++++++++++++++++++++---------- R/predict_tfr.R | 79 +++++++++++++++----------- R/predict_tfr_subnat.R | 4 - R/tfr_median_set_new.R | 52 +++++++++-------- data/UN_variants.rda |binary data/include_2024.rda |only man/bayesTFR-internal.Rd | 1 man/convert.trajectories.Rd | 3 - man/get.tfr.estimation.Rd | 6 +- man/get.tfr.prediction.Rd | 21 +++++-- man/include.Rd | 2 man/plot-trajectories.Rd | 3 + man/predict-tfr.Rd | 6 +- man/tfr.median.set.Rd | 16 +++-- man/tfr.median.set.all.Rd | 3 - man/tfr.predict.extra.Rd | 3 - man/tfr.predict.subnat.Rd | 7 +- man/write.projection.summary.Rd | 10 ++- tests/run_tests.R | 4 - 25 files changed, 328 insertions(+), 153 deletions(-)
Title: A Fast Implementation of Random Forests
Description: A fast implementation of Random Forests, particularly suited for high
dimensional data. Ensembles of classification, regression, survival and
probability prediction trees are supported. Data from genome-wide association
studies can be analyzed efficiently. In addition to data frames, datasets of
class 'gwaa.data' (R package 'GenABEL') and 'dgCMatrix' (R package 'Matrix')
can be directly analyzed.
Author: Marvin N. Wright [aut, cre],
Stefan Wager [ctb],
Philipp Probst [ctb]
Maintainer: Marvin N. Wright <cran@wrig.de>
Diff between ranger versions 0.16.0 dated 2023-11-12 and 0.17.0 dated 2024-11-08
DESCRIPTION | 22 + MD5 | 98 +++---- NAMESPACE | 3 NEWS | 8 R/RcppExports.R | 16 + R/hshrink.R |only R/onAttach.R |only R/predict.R | 31 +- R/print.R | 2 R/ranger.R | 158 +++++++++-- R/treeInfo.R | 2 build/partial.rdb |binary man/hshrink.Rd |only man/predict.ranger.Rd | 5 man/predict.ranger.forest.Rd | 5 man/ranger.Rd | 27 + src/Data.cpp | 39 ++ src/Data.h | 7 src/DataRcpp.h | 3 src/DataSparse.cpp | 3 src/DataSparse.h | 2 src/Forest.cpp | 38 +- src/Forest.h | 26 + src/ForestClassification.cpp | 8 src/ForestProbability.cpp | 8 src/ForestRegression.cpp | 23 + src/ForestSurvival.cpp | 8 src/RcppExports.cpp | 65 ++++ src/Tree.cpp | 83 ++++- src/Tree.h | 14 - src/TreeClassification.cpp | 487 ++++++++++++++++++++++++++++++++-- src/TreeClassification.h | 11 src/TreeProbability.cpp | 488 ++++++++++++++++++++++++++++++++--- src/TreeProbability.h | 11 src/TreeRegression.cpp | 467 ++++++++++++++++++++++++++++++--- src/TreeRegression.h | 24 + src/TreeSurvival.cpp | 20 - src/globals.h | 5 src/rangerCpp.cpp | 14 - src/utility.cpp | 20 + src/utility.h | 41 ++ src/utilityRcpp.cpp | 63 ++++ tests/testthat/test_classification.R | 4 tests/testthat/test_classweights.R | 4 tests/testthat/test_hshrink.R |only tests/testthat/test_missings.R |only tests/testthat/test_poissonsplit.R |only tests/testthat/test_predict.R | 9 tests/testthat/test_print.R | 2 tests/testthat/test_ranger.R | 122 +++++++- tests/testthat/test_regression.R | 4 tests/testthat/test_regularization.R | 2 tests/testthat/test_survival.R | 4 53 files changed, 2134 insertions(+), 372 deletions(-)
Title: Realistic Quantitative Structure Models
Description: Real Twig is a method to correct branch overestimation in quantitative structure models. Overestimated cylinders are correctly tapered using measured twig diameters of corresponding tree species. Supported quantitative structure modeling software includes 'TreeQSM', 'SimpleForest', 'Treegraph', and 'aRchi'. Also included is a novel database of twig diameters and tools for fractal analysis of point clouds.
Author: Aidan Morales [aut, cre, cph] ,
David W. MacFarlane [aut, cph]
Maintainer: Aidan Morales <moral169@msu.edu>
Diff between rTwig versions 1.1.0 dated 2024-08-20 and 1.2.0 dated 2024-11-08
rTwig-1.1.0/rTwig/src/helper_functions.h |only rTwig-1.2.0/rTwig/DESCRIPTION | 15 rTwig-1.2.0/rTwig/MD5 | 121 +- rTwig-1.2.0/rTwig/NAMESPACE | 12 rTwig-1.2.0/rTwig/NEWS.md | 63 + rTwig-1.2.0/rTwig/R/RcppExports.R | 171 +++ rTwig-1.2.0/rTwig/R/box_dimension.R | 292 +++-- rTwig-1.2.0/rTwig/R/cluster_cloud.R |only rTwig-1.2.0/rTwig/R/correct_radii.R | 1277 ++++++-------------------- rTwig-1.2.0/rTwig/R/export_mat.R | 93 + rTwig-1.2.0/rTwig/R/export_mesh.R | 126 ++ rTwig-1.2.0/rTwig/R/import_qsm.R | 74 + rTwig-1.2.0/rTwig/R/import_treegraph.R | 43 rTwig-1.2.0/rTwig/R/plot_qsm.R | 740 +++++++++++---- rTwig-1.2.0/rTwig/R/prune_qsm.R |only rTwig-1.2.0/rTwig/R/qsm_summary.R | 551 ++++------- rTwig-1.2.0/rTwig/R/rTwig-package.R | 10 rTwig-1.2.0/rTwig/R/run_rtwig.R | 104 +- rTwig-1.2.0/rTwig/R/smooth_qsm.R | 35 rTwig-1.2.0/rTwig/R/standardize_qsm.R | 171 ++- rTwig-1.2.0/rTwig/R/tools.R |only rTwig-1.2.0/rTwig/R/tree_metrics.R | 181 ++- rTwig-1.2.0/rTwig/R/update_cylinders.R | 512 +++++----- rTwig-1.2.0/rTwig/README.md | 182 ++- rTwig-1.2.0/rTwig/build/partial.rdb |binary rTwig-1.2.0/rTwig/data/twigs.rda |binary rTwig-1.2.0/rTwig/inst/CITATION |only rTwig-1.2.0/rTwig/inst/REFERENCES.bib | 233 ++-- rTwig-1.2.0/rTwig/inst/doc/Box-Dimension.html | 4 rTwig-1.2.0/rTwig/inst/doc/Dictionary.Rmd | 10 rTwig-1.2.0/rTwig/inst/doc/Dictionary.html | 20 rTwig-1.2.0/rTwig/inst/doc/Metrics.R | 22 rTwig-1.2.0/rTwig/inst/doc/Metrics.Rmd | 24 rTwig-1.2.0/rTwig/inst/doc/Metrics.html | 898 +++++++++--------- rTwig-1.2.0/rTwig/inst/doc/Overview.R | 10 rTwig-1.2.0/rTwig/inst/doc/Overview.Rmd | 17 rTwig-1.2.0/rTwig/inst/doc/Overview.html | 88 - rTwig-1.2.0/rTwig/inst/doc/Twigs.html | 101 +- rTwig-1.2.0/rTwig/inst/doc/Validation.R | 22 rTwig-1.2.0/rTwig/inst/doc/Validation.Rmd | 23 rTwig-1.2.0/rTwig/inst/doc/Validation.html | 732 +++++++------- rTwig-1.2.0/rTwig/inst/extdata/QSM2.csv |only rTwig-1.2.0/rTwig/inst/include |only rTwig-1.2.0/rTwig/man/cluster_cloud.Rd |only rTwig-1.2.0/rTwig/man/correct_radii.Rd | 6 rTwig-1.2.0/rTwig/man/export_mat.Rd | 6 rTwig-1.2.0/rTwig/man/export_mesh.Rd | 27 rTwig-1.2.0/rTwig/man/import_qsm.Rd | 4 rTwig-1.2.0/rTwig/man/import_treegraph.Rd | 4 rTwig-1.2.0/rTwig/man/plot_qsm.Rd | 82 - rTwig-1.2.0/rTwig/man/prune_qsm.Rd |only rTwig-1.2.0/rTwig/man/qsm_summary.Rd | 26 rTwig-1.2.0/rTwig/man/rTwig-package.Rd | 2 rTwig-1.2.0/rTwig/man/run_rtwig.Rd | 19 rTwig-1.2.0/rTwig/man/standardize_qsm.Rd | 6 rTwig-1.2.0/rTwig/man/update_cylinders.Rd | 17 rTwig-1.2.0/rTwig/src/Makevars |only rTwig-1.2.0/rTwig/src/Makevars.win |only rTwig-1.2.0/rTwig/src/RcppExports.cpp | 174 +++ rTwig-1.2.0/rTwig/src/cluster_cloud.cpp |only rTwig-1.2.0/rTwig/src/correct_radii.cpp |only rTwig-1.2.0/rTwig/src/generate_cloud.cpp | 179 ++- rTwig-1.2.0/rTwig/src/helper_functions.cpp | 29 rTwig-1.2.0/rTwig/src/pan_plot.cpp |only rTwig-1.2.0/rTwig/vignettes/Dictionary.Rmd | 10 rTwig-1.2.0/rTwig/vignettes/Metrics.Rmd | 24 rTwig-1.2.0/rTwig/vignettes/Overview.Rmd | 17 rTwig-1.2.0/rTwig/vignettes/Validation.Rmd | 23 68 files changed, 4202 insertions(+), 3430 deletions(-)