Title: Linear Model Evaluation with Randomized Residuals in a
Permutation Procedure
Description: Linear model calculations are made for many random versions of data.
Using residual randomization in a permutation procedure, sums of squares are
calculated over many permutations to generate empirical probability distributions
for evaluating model effects. This packaged is described by
Collyer & Adams (2018). Additionally, coefficients, statistics, fitted values, and residuals generated over many
permutations can be used for various procedures including pairwise tests, prediction, classification, and
model comparison. This package should provide most tools one could need for the analysis of
high-dimensional data, especially in ecology and evolutionary biology, but certainly other fields, as well.
Author: Michael Collyer [aut, cre] ,
Dean Adams [aut]
Maintainer: Michael Collyer <mlcollyer@gmail.com>
Diff between RRPP versions 2.0.3 dated 2024-06-22 and 2.0.4 dated 2024-11-13
DESCRIPTION | 8 +- MD5 | 34 +++++---- NAMESPACE | 1 NEWS.md | 14 ++++ R/QRforX.r | 22 ++---- R/RRPP.support.code.r | 6 - R/RRPP.utils.r | 103 ++++++++++++++++++++++++++++- R/mahal_dist.R |only R/manova.update.r | 44 ++++++------ R/measurement.error.r | 16 +++- R/model.comparison.r | 3 R/pairwise.r | 146 +++++++++++++++++++++++++++++++++++++++--- R/shared.support.code.r | 2 inst/doc/ANOVA.vs.MANOVA.html | 25 ++++--- inst/doc/Using.RRPP.html | 40 +++++------ man/mahal_dist.Rd |only man/measurement.error.Rd | 7 +- man/pairwise.Rd | 52 ++++++++++++++ man/summary.pairwise.Rd | 35 +++++++++- 19 files changed, 445 insertions(+), 113 deletions(-)
Title: Modelling Structured Dynamical Systems in 'greta'
Description: A 'greta' extension for analysing transition matrices and
ordinary differential equations representing dynamical systems. Provides
functions for analysing transition matrices by iteration, and solving
ordinary differential equations. This is an extension to the 'greta'
software, Golding (2019) <doi:10.21105/joss.01601>.
Author: Nick Golding [aut, cph] ,
Nicholas Tierney [aut, cre]
Maintainer: Nicholas Tierney <nicholas.tierney@gmail.com>
Diff between greta.dynamics versions 0.2.0 dated 2022-09-05 and 0.2.2 dated 2024-11-13
greta.dynamics-0.2.0/greta.dynamics/R/package.R |only greta.dynamics-0.2.2/greta.dynamics/DESCRIPTION | 20 greta.dynamics-0.2.2/greta.dynamics/MD5 | 57 - greta.dynamics-0.2.2/greta.dynamics/NAMESPACE | 2 greta.dynamics-0.2.2/greta.dynamics/NEWS.md | 27 greta.dynamics-0.2.2/greta.dynamics/R/checkers.R |only greta.dynamics-0.2.2/greta.dynamics/R/greta.dynamics-package.R |only greta.dynamics-0.2.2/greta.dynamics/R/internals.R | 1 greta.dynamics-0.2.2/greta.dynamics/R/iterate_dynamic_function.R |only greta.dynamics-0.2.2/greta.dynamics/R/iterate_dynamic_matrix.R |only greta.dynamics-0.2.2/greta.dynamics/R/iterate_matrix.R | 46 greta.dynamics-0.2.2/greta.dynamics/R/ode_solve.R | 46 greta.dynamics-0.2.2/greta.dynamics/R/zzz.R |only greta.dynamics-0.2.2/greta.dynamics/README.md | 7 greta.dynamics-0.2.2/greta.dynamics/build/vignette.rds |binary greta.dynamics-0.2.2/greta.dynamics/inst/WORDLIST |only greta.dynamics-0.2.2/greta.dynamics/inst/doc/iterate-matrix-example.R | 5 greta.dynamics-0.2.2/greta.dynamics/inst/doc/iterate-matrix-example.Rmd | 5 greta.dynamics-0.2.2/greta.dynamics/inst/doc/iterate-matrix-example.html | 514 +++++----- greta.dynamics-0.2.2/greta.dynamics/inst/doc/ode-solve-example.R | 45 greta.dynamics-0.2.2/greta.dynamics/inst/doc/ode-solve-example.Rmd | 47 greta.dynamics-0.2.2/greta.dynamics/inst/doc/ode-solve-example.html | 409 ++++--- greta.dynamics-0.2.2/greta.dynamics/man/greta.dynamics.Rd | 21 greta.dynamics-0.2.2/greta.dynamics/man/iterate_dynamic_function.Rd |only greta.dynamics-0.2.2/greta.dynamics/man/iterate_dynamic_matrix.Rd |only greta.dynamics-0.2.2/greta.dynamics/man/iterate_matrix.Rd | 20 greta.dynamics-0.2.2/greta.dynamics/man/ode_solve.Rd | 10 greta.dynamics-0.2.2/greta.dynamics/tests/spelling.R |only greta.dynamics-0.2.2/greta.dynamics/tests/testthat/_snaps |only greta.dynamics-0.2.2/greta.dynamics/tests/testthat/helpers.R | 95 + greta.dynamics-0.2.2/greta.dynamics/tests/testthat/test_iterate_dynamic_function.R |only greta.dynamics-0.2.2/greta.dynamics/tests/testthat/test_iterate_dynamic_matrix.R |only greta.dynamics-0.2.2/greta.dynamics/tests/testthat/test_iterate_matrix.R | 106 -- greta.dynamics-0.2.2/greta.dynamics/tests/testthat/test_ode_solve.R | 68 - greta.dynamics-0.2.2/greta.dynamics/vignettes/iterate-matrix-example.Rmd | 5 greta.dynamics-0.2.2/greta.dynamics/vignettes/ode-solve-example.Rmd | 47 36 files changed, 934 insertions(+), 669 deletions(-)
More information about greta.dynamics at CRAN
Permanent link
Title: Explore the Innards of 'ggplot2' Objects
Description: Extensions to 'ggplot2' providing low-level debug tools: statistics
and geometries echoing their data argument. Layer manipulation: deletion,
insertion, extraction and reordering of layers. Deletion of unused variables
from the data object embedded in "ggplot" objects.
Author: Pedro J. Aphalo [aut, cre]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between gginnards versions 0.2.0 dated 2024-05-01 and 0.2.0-1 dated 2024-11-13
gginnards-0.2.0-1/gginnards/DESCRIPTION | 12 gginnards-0.2.0-1/gginnards/MD5 | 28 +- gginnards-0.2.0-1/gginnards/NEWS.md | 4 gginnards-0.2.0-1/gginnards/R/geom-debug.R | 2 gginnards-0.2.0-1/gginnards/README.md | 27 +- gginnards-0.2.0-1/gginnards/build/vignette.rds |binary gginnards-0.2.0-1/gginnards/inst/doc/user-guide-1.html | 125 +++++----- gginnards-0.2.0-1/gginnards/inst/doc/user-guide-2.R | 6 gginnards-0.2.0-1/gginnards/inst/doc/user-guide-2.html | 102 +++----- gginnards-0.2.0-1/gginnards/man/figures/README-unnamed-chunk-4-1.png |binary gginnards-0.2.0-1/gginnards/man/figures/README-unnamed-chunk-6-1.png |binary gginnards-0.2.0-1/gginnards/man/figures/README-unnamed-chunk-6-2.png |binary gginnards-0.2.0-1/gginnards/man/figures/logo.png |only gginnards-0.2.0-1/gginnards/man/geom_debug_panel.Rd | 2 gginnards-0.2.0-1/gginnards/man/gginnards-package.Rd | 4 gginnards-0.2.0/gginnards/man/figures/logo-gginnards.png |only 16 files changed, 158 insertions(+), 154 deletions(-)
Title: Easy Handling Discrete Time Markov Chains
Description: Functions and S4 methods to create and manage discrete time Markov
chains more easily. In addition functions to perform statistical (fitting
and drawing random variates) and probabilistic (analysis of their structural
proprieties) analysis are provided. See Spedicato (2017) <doi:10.32614/RJ-2017-036>.
Some functions for continuous times Markov chains depend on the suggested ctmcd package.
Author: Giorgio Alfredo Spedicato [aut, cre]
,
Tae Seung Kang [aut],
Sai Bhargav Yalamanchi [aut],
Mildenberger Thoralf [ctb] ,
Deepak Yadav [aut],
Ignacio Cordon [aut] ,
Vandit Jain [ctb],
Toni Giorgino [ctb] ,
Richel J.C. Bilderbeek [ctb] ,
Daniel Ebbert [ [...truncated...]
Maintainer: Giorgio Alfredo Spedicato <spedicato_giorgio@yahoo.it>
Diff between markovchain versions 0.9.5 dated 2023-09-24 and 0.10.0 dated 2024-11-13
markovchain-0.10.0/markovchain/DESCRIPTION | 23 +-- markovchain-0.10.0/markovchain/LICENSE | 4 markovchain-0.10.0/markovchain/MD5 | 71 +++++----- markovchain-0.10.0/markovchain/NEWS.md | 14 + markovchain-0.10.0/markovchain/R/RcppExports.R | 6 markovchain-0.10.0/markovchain/R/classesAndMethods.R | 14 + markovchain-0.10.0/markovchain/R/ctmcProbabilistic.R | 12 + markovchain-0.10.0/markovchain/R/sysdata.rda |binary markovchain-0.10.0/markovchain/README.md | 5 markovchain-0.10.0/markovchain/build/vignette.rds |binary markovchain-0.10.0/markovchain/data/blanden.rda |binary markovchain-0.10.0/markovchain/data/craigsendi.rda |binary markovchain-0.10.0/markovchain/data/holson.rda |binary markovchain-0.10.0/markovchain/data/kullback.rda |binary markovchain-0.10.0/markovchain/data/preproglucacon.rda |binary markovchain-0.10.0/markovchain/data/rain.rda |binary markovchain-0.10.0/markovchain/data/sales.rda |binary markovchain-0.10.0/markovchain/data/tm_abs.rda |binary markovchain-0.10.0/markovchain/inst/doc/an_introduction_to_markovchain_package.R | 32 ++-- markovchain-0.10.0/markovchain/inst/doc/an_introduction_to_markovchain_package.Rmd | 4 markovchain-0.10.0/markovchain/inst/doc/an_introduction_to_markovchain_package.pdf |binary markovchain-0.10.0/markovchain/inst/doc/gsoc_2017_additions.R | 14 + markovchain-0.10.0/markovchain/inst/doc/gsoc_2017_additions.Rmd | 17 +- markovchain-0.10.0/markovchain/inst/doc/gsoc_2017_additions.html |only markovchain-0.10.0/markovchain/inst/doc/higher_order_markov_chains.R | 8 - markovchain-0.10.0/markovchain/inst/doc/higher_order_markov_chains.Rmd | 28 +-- markovchain-0.10.0/markovchain/inst/doc/higher_order_markov_chains.html |only markovchain-0.10.0/markovchain/man/markovchain-class.Rd | 3 markovchain-0.10.0/markovchain/man/markovchain.Rd | 9 + markovchain-0.10.0/markovchain/man/markovchainFit.Rd | 6 markovchain-0.10.0/markovchain/man/ones.Rd | 34 ++-- markovchain-0.10.0/markovchain/man/zeros.Rd | 34 ++-- markovchain-0.10.0/markovchain/src/fittingFunctions.cpp | 6 markovchain-0.10.0/markovchain/tests/testthat/test-sparse.R |only markovchain-0.10.0/markovchain/vignettes/an_introduction_to_markovchain_package.Rmd | 4 markovchain-0.10.0/markovchain/vignettes/gsoc_2017_additions.Rmd | 17 +- markovchain-0.10.0/markovchain/vignettes/higher_order_markov_chains.Rmd | 28 +-- markovchain-0.9.5/markovchain/inst/doc/gsoc_2017_additions.pdf |only markovchain-0.9.5/markovchain/inst/doc/higher_order_markov_chains.pdf |only 39 files changed, 224 insertions(+), 169 deletions(-)
Title: Extensions to 'ggplot2' for Radiation Spectra
Description: Additional annotations, stats, geoms and scales for plotting
"light" spectra with 'ggplot2', together with specializations of ggplot()
and autoplot() methods for spectral data and waveband definitions
stored in objects of classes defined in package 'photobiology'. Part of the
'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] ,
Titta K. Kotilainen [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between ggspectra versions 0.3.13 dated 2024-09-13 and 0.3.14 dated 2024-11-13
DESCRIPTION | 8 MD5 | 94 +++++------ NEWS.md | 9 + R/geom-spct.r | 11 - R/ggspectra.r | 59 ++++--- R/stat-color.R | 86 +++++++--- R/stat-find-wls.R | 168 +++++++++++++------- R/stat-label-peaks.R | 158 ++++++++++++++----- R/stat-peaks.R | 109 +++++++++---- R/stat-spikes.R | 46 ++++- R/stat-wb-box.R | 13 - R/stat-wb-column.R | 9 - R/stat-wb-contribution.R | 40 ++-- R/stat-wb-hbar.R | 14 - R/stat-wb-irrad.R | 24 +- R/stat-wb-label.R | 13 - R/stat-wb-mean.R | 13 - R/stat-wb-relative.R | 36 ++-- R/stat-wb-sirrad.R | 99 +++++++----- R/stat-wb-total.R | 34 ++-- R/stat-wl-strip.R | 60 ++++--- R/stat-wl-summary.R | 6 build/partial.rdb |binary build/vignette.rds |binary inst/doc/userguide-0-r4p-introduction.html | 4 inst/doc/userguide1-grammar.html | 236 ++++++++++++++--------------- inst/doc/userguide2-autoplot-methods.R | 18 +- inst/doc/userguide2-autoplot-methods.html | 141 +++++++++-------- man/geom_spct.Rd | 12 - man/ggspectra-package.Rd | 59 ++++--- man/stat_color.Rd | 70 +++++--- man/stat_find_qtys.Rd | 58 +++---- man/stat_find_wls.Rd | 74 +++++---- man/stat_label_peaks.Rd | 74 ++++++--- man/stat_peaks.Rd | 22 +- man/stat_spikes.Rd | 23 +- man/stat_wb_box.Rd | 27 +-- man/stat_wb_column.Rd | 23 +- man/stat_wb_contribution.Rd | 33 ++-- man/stat_wb_hbar.Rd | 25 +-- man/stat_wb_irrad.Rd | 38 ++-- man/stat_wb_label.Rd | 27 +-- man/stat_wb_mean.Rd | 28 +-- man/stat_wb_relative.Rd | 31 +-- man/stat_wb_sirrad.Rd | 38 ++-- man/stat_wb_total.Rd | 29 +-- man/stat_wl_strip.Rd | 64 ++++--- man/stat_wl_summary.Rd | 20 +- 48 files changed, 1361 insertions(+), 922 deletions(-)
Title: Receiver Operating Characteristic Based on Power Lindley
Distribution
Description: Receiver Operating Characteristic (ROC) analysis is performed assuming samples are from the Power Lindley distribution. Specificity, sensitivity, area under the curve and ROC curve are provided.
Author: Ertan Akgenc [cre, aut, cph]
,
Coskun Kus [aut, ctb]
Maintainer: Ertan Akgenc <statistician.ertan@gmail.com>
Diff between PLindleyROC versions 0.1.1 dated 2024-02-07 and 0.1.2 dated 2024-11-13
DESCRIPTION | 32 +++++++++++++------------------- MD5 | 12 ++++++------ README.md | 4 ++-- build/vignette.rds |binary inst/doc/PLindleyROC.html | 2 +- tests/testthat/Rplots.pdf |binary tests/testthat/test_function.R | 33 +++++++++++++++++++-------------- 7 files changed, 41 insertions(+), 42 deletions(-)
Title: NNG (Nanomsg Next Gen) Lightweight Messaging Library
Description: R binding for NNG (Nanomsg Next Gen), a successor to ZeroMQ. NNG is
a socket library implementing 'Scalability Protocols', a reliable,
high-performance standard for common communications patterns including
publish/subscribe, request/reply and service discovery, over in-process,
IPC, TCP, WebSocket and secure TLS transports. As its own threaded
concurrency framework, provides a toolkit for asynchronous programming and
distributed computing, with intuitive 'aio' objects which resolve
automatically upon completion of asynchronous operations, and
synchronisation primitives allowing R to wait upon events signalled by
concurrent threads.
Author: Charlie Gao [aut, cre] ,
Hibiki AI Limited [cph],
R Consortium [fnd]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between nanonext versions 1.3.0 dated 2024-10-04 and 1.3.1 dated 2024-11-13
nanonext-1.3.0/nanonext/src/nng-b7298cf.tar.xz |only nanonext-1.3.1/nanonext/DESCRIPTION | 6 nanonext-1.3.1/nanonext/MD5 | 182 +-- nanonext-1.3.1/nanonext/NAMESPACE | 1 nanonext-1.3.1/nanonext/NEWS.md | 9 nanonext-1.3.1/nanonext/R/aio.R | 258 ++--- nanonext-1.3.1/nanonext/R/context.R | 159 +-- nanonext-1.3.1/nanonext/R/docs.R | 9 nanonext-1.3.1/nanonext/R/listdial.R | 134 +- nanonext-1.3.1/nanonext/R/messenger.R | 28 nanonext-1.3.1/nanonext/R/nano.R | 83 - nanonext-1.3.1/nanonext/R/nanonext-package.R | 96 - nanonext-1.3.1/nanonext/R/ncurl.R | 108 +- nanonext-1.3.1/nanonext/R/opts.R | 487 ++++------ nanonext-1.3.1/nanonext/R/sendrecv.R | 111 +- nanonext-1.3.1/nanonext/R/socket.R | 187 +-- nanonext-1.3.1/nanonext/R/stats.R | 89 - nanonext-1.3.1/nanonext/R/stream.R | 42 nanonext-1.3.1/nanonext/R/sync.R | 154 +-- nanonext-1.3.1/nanonext/R/tls.R | 89 - nanonext-1.3.1/nanonext/R/utils.R | 148 +-- nanonext-1.3.1/nanonext/README.md | 17 nanonext-1.3.1/nanonext/build/vignette.rds |binary nanonext-1.3.1/nanonext/configure | 2 nanonext-1.3.1/nanonext/configure.ucrt | 2 nanonext-1.3.1/nanonext/inst/doc/nanonext.html | 35 nanonext-1.3.1/nanonext/man/as.promise.ncurlAio.Rd | 11 nanonext-1.3.1/nanonext/man/as.promise.recvAio.Rd | 11 nanonext-1.3.1/nanonext/man/call_aio.Rd | 52 - nanonext-1.3.1/nanonext/man/close.Rd | 49 - nanonext-1.3.1/nanonext/man/collect_aio.Rd | 14 nanonext-1.3.1/nanonext/man/collect_pipe.Rd | 12 nanonext-1.3.1/nanonext/man/context.Rd | 26 nanonext-1.3.1/nanonext/man/cv.Rd | 71 - nanonext-1.3.1/nanonext/man/dial.Rd | 58 - nanonext-1.3.1/nanonext/man/dot-context.Rd | 12 nanonext-1.3.1/nanonext/man/dot-dispatcher.Rd | 3 nanonext-1.3.1/nanonext/man/dot-keep.Rd | 7 nanonext-1.3.1/nanonext/man/dot-online.Rd | 2 nanonext-1.3.1/nanonext/man/dot-unresolved.Rd | 18 nanonext-1.3.1/nanonext/man/figures/logo.png |binary nanonext-1.3.1/nanonext/man/grapes-twiddle-greater-than-grapes.Rd | 18 nanonext-1.3.1/nanonext/man/is_aio.Rd | 13 nanonext-1.3.1/nanonext/man/is_error_value.Rd | 10 nanonext-1.3.1/nanonext/man/listen.Rd | 48 nanonext-1.3.1/nanonext/man/lock.Rd | 13 nanonext-1.3.1/nanonext/man/mclock.Rd | 12 nanonext-1.3.1/nanonext/man/messenger.Rd | 26 nanonext-1.3.1/nanonext/man/msleep.Rd | 12 nanonext-1.3.1/nanonext/man/nano.Rd | 95 - nanonext-1.3.1/nanonext/man/nanonext-package.Rd | 96 - nanonext-1.3.1/nanonext/man/ncurl.Rd | 6 nanonext-1.3.1/nanonext/man/ncurl_aio.Rd | 19 nanonext-1.3.1/nanonext/man/ncurl_session.Rd | 12 nanonext-1.3.1/nanonext/man/nng_error.Rd | 8 nanonext-1.3.1/nanonext/man/nng_version.Rd | 2 nanonext-1.3.1/nanonext/man/opt.Rd | 423 ++++---- nanonext-1.3.1/nanonext/man/parse_url.Rd | 8 nanonext-1.3.1/nanonext/man/pipe_notify.Rd | 17 nanonext-1.3.1/nanonext/man/protocols.Rd | 4 nanonext-1.3.1/nanonext/man/random.Rd | 27 nanonext-1.3.1/nanonext/man/reap.Rd | 6 nanonext-1.3.1/nanonext/man/recv.Rd | 50 - nanonext-1.3.1/nanonext/man/recv_aio.Rd | 38 nanonext-1.3.1/nanonext/man/reply.Rd | 51 - nanonext-1.3.1/nanonext/man/request.Rd | 79 - nanonext-1.3.1/nanonext/man/send.Rd | 56 - nanonext-1.3.1/nanonext/man/send_aio.Rd | 41 nanonext-1.3.1/nanonext/man/serial_config.Rd | 12 nanonext-1.3.1/nanonext/man/socket.Rd | 96 - nanonext-1.3.1/nanonext/man/start.Rd | 8 nanonext-1.3.1/nanonext/man/stat.Rd | 87 - nanonext-1.3.1/nanonext/man/status_code.Rd | 8 nanonext-1.3.1/nanonext/man/stop_aio.Rd | 12 nanonext-1.3.1/nanonext/man/stream.Rd | 28 nanonext-1.3.1/nanonext/man/subscribe.Rd | 18 nanonext-1.3.1/nanonext/man/survey_time.Rd | 26 nanonext-1.3.1/nanonext/man/tls_config.Rd | 39 nanonext-1.3.1/nanonext/man/transports.Rd | 4 nanonext-1.3.1/nanonext/man/unresolved.Rd | 9 nanonext-1.3.1/nanonext/man/write_cert.Rd | 14 nanonext-1.3.1/nanonext/man/zzz.Rd | 3 nanonext-1.3.1/nanonext/src/Makevars.win | 6 nanonext-1.3.1/nanonext/src/aio.c | 6 nanonext-1.3.1/nanonext/src/core.c | 19 nanonext-1.3.1/nanonext/src/init.c | 14 nanonext-1.3.1/nanonext/src/nanonext.h | 2 nanonext-1.3.1/nanonext/src/ncurl.c | 6 nanonext-1.3.1/nanonext/src/nng-190.tar.xz |only nanonext-1.3.1/nanonext/src/sync.c | 3 nanonext-1.3.1/nanonext/src/thread.c | 267 +++-- nanonext-1.3.1/nanonext/src/utils.c | 11 nanonext-1.3.1/nanonext/tests/tests.R | 13 93 files changed, 2385 insertions(+), 2298 deletions(-)
Title: Bayesian Sparse Estimation of a Covariance Matrix
Description: Provides functions which perform Bayesian estimations of
a covariance matrix for multivariate normal data. Assumes that
the covariance matrix is sparse or band matrix and positive-definite.
This software has been developed using funding supported by
Basic Science Research Program through the National Research
Foundation of Korea ('NRF') funded by the Ministry of Education
('RS-2023-00211979', 'NRF-2022R1A5A7033499', 'NRF-2020R1A4A1018207'
and 'NRF-2020R1C1C1A01013338').
Author: Kwangmin Lee [aut],
Kyeongwon Lee [aut, cre],
Kyoungjae Lee [aut],
Seongil Jo [aut],
Jaeyong Lee [ctb]
Maintainer: Kyeongwon Lee <kwlee1718@gmail.com>
Diff between bspcov versions 1.0.0 dated 2024-02-06 and 1.0.1 dated 2024-11-13
DESCRIPTION | 31 +++++++++++++++++++++---------- MD5 | 8 ++++---- R/bmspcov.R | 2 +- R/sbmspcov.R | 2 +- README.md | 8 +++++--- 5 files changed, 32 insertions(+), 19 deletions(-)
Title: MCMC Estimation of Bayesian Vectorautoregressions
Description: Efficient Markov Chain Monte Carlo (MCMC) algorithms for the
fully Bayesian estimation of vectorautoregressions (VARs) featuring
stochastic volatility (SV). Implements state-of-the-art shrinkage
priors following Gruber & Kastner (2023) <doi:10.48550/arXiv.2206.04902>.
Efficient equation-per-equation estimation following Kastner & Huber
(2020) <doi:10.1002/for.2680> and Carrerio et al. (2021)
<doi:10.1016/j.jeconom.2021.11.010>.
Author: Luis Gruber [cph, aut, cre] ,
Gregor Kastner [ctb]
Maintainer: Luis Gruber <Luis.Gruber@aau.at>
Diff between bayesianVARs versions 0.1.4 dated 2024-09-06 and 0.1.5 dated 2024-11-13
DESCRIPTION | 6 MD5 | 16 NEWS.md | 4 R/data.R | 36 R/utility_functions.R | 4288 ++++++++++++++++++------------------- inst/doc/bayesianVARs-vignette.pdf |binary man/specify_prior_phi.Rd | 2 man/usmacro_growth.Rd | 2 src/bvar_cpp.cpp | 5 9 files changed, 2183 insertions(+), 2176 deletions(-)
Title: Luck-Corrected Peer Performance Analysis in R
Description: Provides functions to perform the peer performance
analysis of funds' returns as described in Ardia and Boudt (2018) <doi:10.1016/j.jbankfin.2017.10.014>.
Author: David Ardia [aut, cre] ,
Kris Boudt [aut] ,
Nabil Bouamara [ctb],
Sebastien Legros [ctb]
Maintainer: David Ardia <david.ardia.ch@gmail.com>
Diff between PeerPerformance versions 2.2.5 dated 2021-05-16 and 2.3.1 dated 2024-11-13
DESCRIPTION | 26 +-- MD5 | 52 +++--- NAMESPACE | 35 ++-- NEWS | 18 +- R/PeerPerformance.R | 97 ++++++----- R/alphaScreening.R | 327 +++++++++++++++------------------------- R/alphaTesting.R |only R/computePi.R | 169 +++++++++++--------- R/functions.R | 105 ++++++------ R/msharpeScreening.R | 160 +++++++++---------- R/msharpeTesting.R | 251 +++++++++++++++--------------- R/sharpeScreening.R | 159 +++++++++---------- R/sharpeTesting.R | 197 +++++++++++------------- README.md | 14 + build/partial.rdb |binary inst/CITATION | 10 - inst/COPYRIGHTS | 2 man/PeerPerformance.Rd | 157 ++++++++++--------- man/alphaScreening.Rd | 305 ++++++++++++++++++------------------- man/alphaTesting.Rd |only man/hfdata.Rd | 38 ++-- man/msharpe.Rd | 140 ++++++++--------- man/msharpeScreening.Rd | 302 ++++++++++++++++++------------------ man/msharpeTesting.Rd | 292 +++++++++++++++++------------------ man/sharpe.Rd | 120 +++++++------- man/sharpeScreening.Rd | 304 ++++++++++++++++++------------------- man/sharpeTesting.Rd | 258 +++++++++++++++---------------- tests/testthat/test_screening.R | 62 ++----- 28 files changed, 1776 insertions(+), 1824 deletions(-)
More information about PeerPerformance at CRAN
Permanent link
Title: Hexagonal Binning Routines
Description: Binning and plotting functions for hexagonal bins.
Author: Dan Carr [aut],
Nicholas Lewin-Koh [aut],
Martin Maechler [aut],
Deepayan Sarkar [aut],
Edzer Pebesma [cre]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between hexbin versions 1.28.4 dated 2024-09-04 and 1.28.5 dated 2024-11-13
DESCRIPTION | 14 +++++++------- MD5 | 6 +++--- build/vignette.rds |binary inst/doc/hexagon_binning.pdf |binary 4 files changed, 10 insertions(+), 10 deletions(-)
Title: High-Performance 'WebGl' Rendering for Package 'leaflet'
Description: Provides bindings to the 'Leaflet.glify' JavaScript library which extends the 'leaflet' JavaScript library to render large data in the browser using 'WebGl'.
Author: Tim Appelhans [cre, aut, cph],
Colin Fay [ctb] ,
Robert Plummer [ctb] ,
Kent Johnson [ctb],
Sebastian Gatscha [ctb],
Olivier Roy [ctb]
Maintainer: Tim Appelhans <tim.appelhans@gmail.com>
Diff between leafgl versions 0.1.1 dated 2020-06-28 and 0.2.2 dated 2024-11-13
DESCRIPTION | 23 - MD5 | 52 +-- NEWS |only NEWS.md |only R/glify-helpers.R | 44 +- R/glify-lines.R | 12 R/glify-points.R | 29 + R/glify-polygons.R | 13 R/utils-color.R | 44 +- R/utils-popup.R | 14 README.md | 50 +- inst/htmlwidgets/Leaflet.glify/addGlifyPoints.js | 99 ++--- inst/htmlwidgets/Leaflet.glify/addGlifyPointsFl.js | 3 inst/htmlwidgets/Leaflet.glify/addGlifyPointsMinimal.js | 9 inst/htmlwidgets/Leaflet.glify/addGlifyPointsSrc.js | 17 - inst/htmlwidgets/Leaflet.glify/addGlifyPolygons.js | 61 +++ inst/htmlwidgets/Leaflet.glify/addGlifyPolygonsFl.js | 3 inst/htmlwidgets/Leaflet.glify/addGlifyPolygonsSrc.js | 9 inst/htmlwidgets/Leaflet.glify/addGlifyPolylines.js | 34 +- inst/htmlwidgets/Leaflet.glify/addGlifyPolylinesSrc.js | 9 inst/htmlwidgets/Leaflet.glify/glify-browser.js | 267 ---------------- man/addGlPoints.Rd | 29 + man/makeColorMatrix.Rd | 16 tests/testthat/test-leafgl-addGlPoints.R | 18 - tests/testthat/test-leafgl-addGlPolygons.R | 30 + tests/testthat/test-leafgl-addGlPolylines.R | 47 ++ tests/testthat/test-leafgl-colors.R | 71 +++- tests/testthat/test-leafgl-popup.R | 235 +++++++++++--- 28 files changed, 702 insertions(+), 536 deletions(-)
Title: Measuring Disparity
Description: A modular package for measuring disparity (multidimensional space occupancy). Disparity can be calculated from any matrix defining a multidimensional space. The package provides a set of implemented metrics to measure properties of the space and allows users to provide and test their own metrics. The package also provides functions for looking at disparity in a serial way (e.g. disparity through time) or per groups as well as visualising the results. Finally, this package provides several statistical tests for disparity analysis.
Author: Thomas Guillerme [aut, cre, cph]
,
Mark Puttick [aut, cph],
Jack Hatfield [aut, cph]
Maintainer: Thomas Guillerme <guillert@tcd.ie>
Diff between dispRity versions 1.8 dated 2023-12-11 and 1.9 dated 2024-11-13
DESCRIPTION | 12 MD5 | 140 ++--- NAMESPACE | 3 NEWS.md | 34 + R/MCMCglmm.subsets.R | 6 R/MCMCglmm.utilities.R | 15 R/adonis.dispRity.R | 6 R/as.covar.R | 46 - R/as.covar_fun.R | 10 R/boot.matrix.R | 122 ++-- R/boot.matrix_fun.R | 35 + R/char.diff.R | 10 R/chrono.subsets.R | 11 R/chrono.subsets_fun.R | 2 R/custom.subsets.R | 20 R/custom.subsets_fun.R | 16 R/dispRity.R | 134 ++++- R/dispRity.covar.projections.R | 1 R/dispRity.metric.R | 73 ++ R/dispRity.utilities.R | 71 ++ R/dispRity.utilities_fun.R | 21 R/dispRity_fun.R | 508 ++++++++++++++------ R/dtt.dispRity_fun.R | 20 R/make.demo.data.R | 12 R/make.metric.R | 174 +++++- R/make.metric_fun.R | 23 R/match.tip.edge.R | 189 +++++-- R/multi.ace.R | 772 ++++++++++++++++++++++--------- R/multi.ace_fun.R | 112 +++- R/null.test_fun.R | 11 R/pair.plot_fun.R | 2 R/pgls.dispRity.R | 8 R/plot.dispRity_fun.R | 33 + R/print.dispRity.R | 6 R/randtest.dispRity.R | 2 R/reduce.space.R | 23 R/reduce.space_fun.R | 4 R/remove.zero.brlen.R | 2 R/sanitizing.R | 18 R/set.root.time.R |only R/slice.tree_fun.R | 2 R/slide.nodes.R | 10 R/summary.dispRity.R | 7 R/summary.dispRity_fun.R | 8 R/test.metric.R | 2 R/test.metric_fun.R | 1 R/tree.age.R | 2 build/partial.rdb |binary data/BeckLee_ages.rda |binary data/BeckLee_disparity.rda |binary data/BeckLee_mat50.rda |binary data/BeckLee_mat99.rda |binary data/BeckLee_tree.rda |binary data/charadriiformes.rda |binary data/demo_data.rda |binary data/disparity.rda |binary inst/References.bib | 11 inst/vignettes/dispRity_workhop_code.Rmd | 2 man/MCMCglmm.utilities.Rd | 5 man/adonis.dispRity.Rd | 3 man/boot.matrix.Rd | 14 man/chrono.subsets.Rd | 5 man/custom.subsets.Rd | 6 man/dispRity.Rd | 3 man/dispRity.covar.projections.Rd | 3 man/dispRity.metric.Rd | 15 man/make.dispRity.Rd | 10 man/make.metric.Rd | 5 man/match.tip.edge.Rd | 33 + man/multi.ace.Rd | 38 + man/set.root.time.Rd |only man/tree.age.Rd | 2 72 files changed, 2099 insertions(+), 795 deletions(-)
Title: EZ-to-Use Biplots
Description: Provides users with an EZ-to-use platform for representing data
with biplots. Currently principal component analysis (PCA), canonical variate
analysis (CVA) and simple correspondence analysis (CA) biplots are included.
This is accompanied by various formatting
options for the samples and axes. Alpha-bags and concentration ellipses
are included for visual enhancements and interpretation. For an extensive
discussion on the topic, see Gower, J.C., Lubbe, S. and le Roux, N.J.
(2011, ISBN: 978-0-470-01255-0) Understanding Biplots. Wiley: Chichester.
Author: Sugnet Lubbe [aut, cre, cph] ,
Niel le Roux [aut] ,
Johane Nienkemper-Swanepoel [aut]
,
Raeesa Ganey [aut] ,
Ruan Buys [aut] ,
Zoe-Mae Adams [aut] ,
Peter Manefeldt [aut]
Maintainer: Sugnet Lubbe <muvisu@sun.ac.za>
Diff between biplotEZ versions 2.1 dated 2024-09-14 and 2.2 dated 2024-11-13
biplotEZ-2.1/biplotEZ/man/print.CA.Rd |only biplotEZ-2.2/biplotEZ/DESCRIPTION | 6 biplotEZ-2.2/biplotEZ/MD5 | 74 +- biplotEZ-2.2/biplotEZ/NAMESPACE | 3 biplotEZ-2.2/biplotEZ/R/CA.R | 45 + biplotEZ-2.2/biplotEZ/R/CVA.R | 4 biplotEZ-2.2/biplotEZ/R/aesthetics.R | 70 ++ biplotEZ-2.2/biplotEZ/R/biplot.R | 149 ++++- biplotEZ-2.2/biplotEZ/R/clouds.R | 37 - biplotEZ-2.2/biplotEZ/R/plot2D.R | 34 + biplotEZ-2.2/biplotEZ/R/plotting.R | 22 biplotEZ-2.2/biplotEZ/README.md | 3 biplotEZ-2.2/biplotEZ/inst/doc/Biplots_in_1D.R | 4 biplotEZ-2.2/biplotEZ/inst/doc/Biplots_in_1D.Rmd | 11 biplotEZ-2.2/biplotEZ/inst/doc/Biplots_in_1D.html | 351 +++++++------- biplotEZ-2.2/biplotEZ/inst/doc/Biplots_in_3D.R | 6 biplotEZ-2.2/biplotEZ/inst/doc/Biplots_in_3D.Rmd | 8 biplotEZ-2.2/biplotEZ/inst/doc/Biplots_in_3D.html | 64 +- biplotEZ-2.2/biplotEZ/inst/doc/CA_in_biplotEZ.R | 41 + biplotEZ-2.2/biplotEZ/inst/doc/CA_in_biplotEZ.Rmd | 108 +++- biplotEZ-2.2/biplotEZ/inst/doc/CA_in_biplotEZ.html | 309 +++++++----- biplotEZ-2.2/biplotEZ/inst/doc/Class_separation.html | 30 - biplotEZ-2.2/biplotEZ/inst/doc/MDS.html | 16 biplotEZ-2.2/biplotEZ/inst/doc/biplotEZ.Rmd | 4 biplotEZ-2.2/biplotEZ/inst/doc/biplotEZ.html | 54 -- biplotEZ-2.2/biplotEZ/inst/doc/biplotEZ_enhancements.html | 46 - biplotEZ-2.2/biplotEZ/man/CA.Rd | 17 biplotEZ-2.2/biplotEZ/man/CA.biplot.Rd | 3 biplotEZ-2.2/biplotEZ/man/CLPs.Rd | 3 biplotEZ-2.2/biplotEZ/man/CLRs.Rd |only biplotEZ-2.2/biplotEZ/man/alpha.bags.Rd | 2 biplotEZ-2.2/biplotEZ/man/biplot.Rd | 6 biplotEZ-2.2/biplotEZ/man/density2D.Rd | 3 biplotEZ-2.2/biplotEZ/man/fit.measures.Rd | 5 biplotEZ-2.2/biplotEZ/man/interpolate.Rd | 6 biplotEZ-2.2/biplotEZ/vignettes/Biplots_in_1D.Rmd | 11 biplotEZ-2.2/biplotEZ/vignettes/Biplots_in_3D.Rmd | 8 biplotEZ-2.2/biplotEZ/vignettes/CA_in_biplotEZ.Rmd | 108 +++- biplotEZ-2.2/biplotEZ/vignettes/biplotEZ.Rmd | 4 39 files changed, 1101 insertions(+), 574 deletions(-)
Title: Analise multivariada (brazilian portuguese)
Description: Analise multivariada, tendo funcoes que executam analise de correspondencia simples (CA) e multipla (MCA), analise de componentes principais (PCA), analise de correlacao canonica (CCA), analise fatorial (FA), escalonamento multidimensional (MDS), analise discriminante linear (LDA) e quadratica (QDA), analise de cluster hierarquico e nao hierarquico, regressao linear simples e multipla, analise de multiplos fatores (MFA) para dados quantitativos, qualitativos, de frequencia (MFACT) e dados mistos, biplot, scatter plot, projection pursuit (PP), grant tour e outras funcoes uteis para a analise multivariada.
Author: Paulo Cesar Ossani [aut, cre] ,
Marcelo Angelo Cirillo [aut]
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between MVar.pt versions 2.2.3 dated 2024-11-05 and 2.2.4 dated 2024-11-13
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/Plot.PCA.R | 2 +- man/MVar.pt-package.Rd | 4 ++-- 4 files changed, 10 insertions(+), 10 deletions(-)
Title: Multivariate Analysis
Description: Multivariate analysis, having functions that perform simple correspondence analysis (CA) and multiple correspondence analysis (MCA), principal components analysis (PCA), canonical correlation analysis (CCA), factorial analysis (FA), multidimensional scaling (MDS), linear (LDA) and quadratic discriminant analysis (QDA), hierarchical and non-hierarchical cluster analysis, simple and multiple linear regression, multiple factor analysis (MFA) for quantitative, qualitative, frequency (MFACT) and mixed data, biplot, scatter plot, projection pursuit (PP), grant tour method and other useful functions for the multivariate analysis.
Author: Paulo Cesar Ossani [aut, cre] ,
Marcelo Angelo Cirillo [aut]
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between MVar versions 2.2.3 dated 2024-11-05 and 2.2.4 dated 2024-11-13
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/Plot.PCA_English.R | 2 +- man/MVar-package.Rd | 4 ++-- 4 files changed, 10 insertions(+), 10 deletions(-)
Title: A 'shiny' Application for Handwriting Analysis
Description: Perform statistical writership analysis of scanned handwritten documents with a 'shiny' app for 'handwriter'.
Author: Iowa State University of Science and Technology on behalf of its Center
for Statistics and Applications in Forensic Evidence [aut, cph,
fnd],
Stephanie Reinders [aut, cre]
Maintainer: Stephanie Reinders <srein@iastate.edu>
Diff between handwriterApp versions 1.0.1 dated 2024-09-09 and 2.0.0 dated 2024-11-13
handwriterApp-1.0.1/handwriterApp/R/case_known.R |only handwriterApp-1.0.1/handwriterApp/R/case_maindir.R |only handwriterApp-1.0.1/handwriterApp/R/case_qd.R |only handwriterApp-1.0.1/handwriterApp/R/case_report.R |only handwriterApp-1.0.1/handwriterApp/R/current_image.R |only handwriterApp-1.0.1/handwriterApp/R/demo_known.R |only handwriterApp-1.0.1/handwriterApp/R/demo_preview.R |only handwriterApp-1.0.1/handwriterApp/R/demo_qd.R |only handwriterApp-1.0.1/handwriterApp/R/inner.R |only handwriterApp-1.0.1/handwriterApp/R/server_utils.R |only handwriterApp-1.0.1/handwriterApp/R/ui_utils.R |only handwriterApp-1.0.1/handwriterApp/data/templateK8.rda |only handwriterApp-1.0.1/handwriterApp/inst/extdata/images/clusters.png |only handwriterApp-1.0.1/handwriterApp/man/templateK8.Rd |only handwriterApp-2.0.0/handwriterApp/DESCRIPTION | 13 handwriterApp-2.0.0/handwriterApp/MD5 | 72 +- handwriterApp-2.0.0/handwriterApp/NAMESPACE | 1 handwriterApp-2.0.0/handwriterApp/NEWS.md | 24 handwriterApp-2.0.0/handwriterApp/R/app.R | 182 ++++- handwriterApp-2.0.0/handwriterApp/R/back-next-buttons.R |only handwriterApp-2.0.0/handwriterApp/R/data.R | 107 +-- handwriterApp-2.0.0/handwriterApp/R/globals.R | 5 handwriterApp-2.0.0/handwriterApp/R/graphs.R |only handwriterApp-2.0.0/handwriterApp/R/plots.R |only handwriterApp-2.0.0/handwriterApp/R/report.R |only handwriterApp-2.0.0/handwriterApp/R/scenario1-master.R |only handwriterApp-2.0.0/handwriterApp/R/scenario2-case-known.R |only handwriterApp-2.0.0/handwriterApp/R/scenario2-case-maindir.R |only handwriterApp-2.0.0/handwriterApp/R/scenario2-case-qd.R |only handwriterApp-2.0.0/handwriterApp/R/scenario2-demo-known.R |only handwriterApp-2.0.0/handwriterApp/R/scenario2-demo-preview.R |only handwriterApp-2.0.0/handwriterApp/R/scenario2-demo-qd.R |only handwriterApp-2.0.0/handwriterApp/R/scenario2-master.R |only handwriterApp-2.0.0/handwriterApp/R/select-image.R |only handwriterApp-2.0.0/handwriterApp/R/server-utils.R |only handwriterApp-2.0.0/handwriterApp/R/single-image.R |only handwriterApp-2.0.0/handwriterApp/R/ui-utils.R |only handwriterApp-2.0.0/handwriterApp/R/writer-profile.R |only handwriterApp-2.0.0/handwriterApp/README.md | 53 - handwriterApp-2.0.0/handwriterApp/data/rates.rda |only handwriterApp-2.0.0/handwriterApp/data/templateK40.rda |binary handwriterApp-2.0.0/handwriterApp/inst/extdata/HTML/LICENSE.html |only handwriterApp-2.0.0/handwriterApp/inst/extdata/HTML/about.html | 13 handwriterApp-2.0.0/handwriterApp/inst/extdata/HTML/case_files.html | 4 handwriterApp-2.0.0/handwriterApp/inst/extdata/HTML/case_requirements.html | 2 handwriterApp-2.0.0/handwriterApp/inst/extdata/HTML/contact.html | 3 handwriterApp-2.0.0/handwriterApp/inst/extdata/HTML/demo_preview.html | 8 handwriterApp-2.0.0/handwriterApp/inst/extdata/HTML/permitted_use.html |only handwriterApp-2.0.0/handwriterApp/inst/extdata/HTML/setup.html | 6 handwriterApp-2.0.0/handwriterApp/inst/extdata/images/template.png |only handwriterApp-2.0.0/handwriterApp/inst/extdata/report_templates/scenario1_report_pdf.Rmd |only handwriterApp-2.0.0/handwriterApp/inst/extdata/styles.css | 353 +++++----- handwriterApp-2.0.0/handwriterApp/man/handwriterApp.Rd | 12 handwriterApp-2.0.0/handwriterApp/man/plot_writer_profiles.Rd |only handwriterApp-2.0.0/handwriterApp/man/rates.Rd |only handwriterApp-2.0.0/handwriterApp/man/templateK40.Rd | 2 56 files changed, 561 insertions(+), 299 deletions(-)
Title: Estimating Length-Based Indicators for Fish Stock
Description: Provides tools for estimating length-based indicators from length frequency data to assess fish stock status and manage fisheries sustainably. Implements methods from Cope and Punt (2009) <doi:10.1577/C08-025.1> for data-limited stock assessment and Froese (2004) <doi:10.1111/j.1467-2979.2004.00144.x> for detecting overfishing using simple indicators. Key functions include:
FrequencyTable(): Calculate the frequency table from the collected and also the extract the length frequency data from the frequency table with the upper length_range. A numeric value specifying the bin width for class intervals. If not provided, the bin width is automatically calculated using Sturges (1926) <doi:10.1080/01621459.1926.10502161> formula.
CalPar(): Calculates various lengths used in fish stock assessment as biological length indicators such as asymptotic length (Linf), maximum length (Lmax), length at sexual maturity (Lm), and optimal length (Lopt).
FishPar(): Calculates length-based [...truncated...]
Author: Ataher Ali [aut, cre],
Mohammed Shahidul Alam [aut]
Maintainer: Ataher Ali <ataher.cu.ms@gmail.com>
Diff between aLBI versions 0.1.5 dated 2024-07-26 and 0.1.6 dated 2024-11-13
aLBI-0.1.5/aLBI/inst/docs |only aLBI-0.1.5/aLBI/inst/plots |only aLBI-0.1.6/aLBI/DESCRIPTION | 8 aLBI-0.1.6/aLBI/MD5 | 59 --- aLBI-0.1.6/aLBI/NAMESPACE | 12 aLBI-0.1.6/aLBI/R/DataDescription.R | 17 aLBI-0.1.6/aLBI/R/FishPar.R | 14 aLBI-0.1.6/aLBI/R/FishSS.R | 5 aLBI-0.1.6/aLBI/R/FrequencyTable.R |only aLBI-0.1.6/aLBI/data/ExData.rda |only aLBI-0.1.6/aLBI/inst/doc/Introduction.R | 44 ++ aLBI-0.1.6/aLBI/inst/doc/Introduction.Rmd | 131 +++++-- aLBI-0.1.6/aLBI/inst/doc/Introduction.html | 534 ++++++++++++++++++----------- aLBI-0.1.6/aLBI/inst/exdata/ExData.xlsx |only aLBI-0.1.6/aLBI/man/ExData.Rd |only aLBI-0.1.6/aLBI/man/FrequencyTable.Rd |only aLBI-0.1.6/aLBI/vignettes/Introduction.Rmd | 131 +++++-- 17 files changed, 628 insertions(+), 327 deletions(-)
Title: Extensible Data Pattern Searching Framework
Description: Extensible framework for
subgroup discovery (Atzmueller (2015) <doi:10.1002/widm.1144>),
contrast patterns (Chen (2022) <doi:10.48550/arXiv.2209.13556>),
emerging patterns (Dong (1999) <doi:10.1145/312129.312191>),
association rules (Agrawal (1994) <https://www.vldb.org/conf/1994/P487.PDF>) and
conditional correlations (Hájek (1978) <doi:10.1007/978-3-642-66943-9>).
Both crisp (Boolean, binary) and fuzzy data are supported.
It generates conditions in the form of elementary conjunctions, evaluates
them on a dataset and checks the induced sub-data for interesting statistical
properties. A user-defined function may be defined to evaluate on each generated
condition to search for custom patterns.
Author: Michal Burda [aut, cre]
Maintainer: Michal Burda <michal.burda@osu.cz>
Diff between nuggets versions 1.2.0 dated 2024-10-11 and 1.3.0 dated 2024-11-13
DESCRIPTION | 19 - MD5 | 59 ++- NAMESPACE | 9 NEWS.md | 6 R/RcppExports.R | 8 R/convert_data_to_list.R |only R/dichotomize.R | 2 R/dig.R | 344 +++------------------- R/dig_contrasts.R |only R/dig_correlations.R | 11 R/dig_grid.R | 80 ++++- R/extract_cols.R |only R/is_degree.R |only R/nuggets-package.R | 3 R/partition.R |only R/testers.R | 21 + R/var_grid.R | 14 README.md | 501 ++++++++++++++++++++++++++------- inst/CITATION | 30 + man/dig.Rd | 29 - man/dig_contrasts.Rd |only man/dig_correlations.Rd | 2 man/dig_grid.Rd | 29 + man/is_degree.Rd |only man/nuggets-package.Rd | 2 man/partition.Rd |only src/Makevars | 11 src/RcppExports.cpp | 26 + src/dig/Data.h | 8 src/dig/Task.h | 32 +- src/raisedcos.cpp |only src/triangle.cpp |only tests/testthat/test-dig.R | 41 ++ tests/testthat/test-dig_correlations.R | 11 tests/testthat/test-dig_grid.R |only tests/testthat/test-is_degree.R |only tests/testthat/test-partition.R |only 37 files changed, 796 insertions(+), 502 deletions(-)
Title: Generalized Ridge Trace Plots for Ridge Regression
Description: The genridge package introduces generalizations of the standard univariate
ridge trace plot used in ridge regression and related methods. These graphical methods
show both bias (actually, shrinkage) and precision, by plotting the covariance ellipsoids of the estimated
coefficients, rather than just the estimates themselves. 2D and 3D plotting methods are provided,
both in the space of the predictor variables and in the transformed space of the PCA/SVD of the
predictors.
Author: Michael Friendly [aut, cre]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between genridge versions 0.7.0 dated 2023-08-08 and 0.7.1 dated 2024-11-13
DESCRIPTION | 15 +++---- MD5 | 47 ++++++++++++----------- NAMESPACE | 6 ++ NEWS.md | 37 +++++++++++------- R/data.R | 9 ++-- R/genridge-package.R | 3 - R/plot.precision.R |only R/precision.R | 31 ++++++++------- R/ridge.R | 65 +++++++++++++++++++++++++------- build/partial.rdb |binary inst/WORDLIST | 6 ++ man/Detroit.Rd | 2 man/figures/README-biplot-1.png |binary man/figures/README-fig.cap |only man/figures/README-longley-pairs-1.png |binary man/figures/README-longley-tp1-1.png |binary man/figures/README-longley-tp2-1.png |binary man/figures/README-pca-dim56-1.png |binary man/figures/README-pca-pairs-1.png |binary man/figures/README-pca-traceplot-1.png |binary man/figures/README-precision-plot-1.png |binary man/genridge-package.Rd | 2 man/plot.precision.Rd |only man/precision.Rd | 25 +++++------- man/prostate.Rd | 7 ++- man/ridge.Rd | 41 +++++++++++++++----- 26 files changed, 194 insertions(+), 102 deletions(-)
Title: Archaeological Time Series
Description: A toolkit for archaeological time series and time intervals.
This package provides a system of classes and methods to represent and
work with archaeological time series and time intervals. Dates are
represented as "rata die" and can be converted to (virtually) any
calendar defined by Reingold and Dershowitz (2018)
<doi:10.1017/9781107415058>. This packages offers a simple API that
can be used by other specialized packages.
Author: Nicolas Frerebeau [aut, cre] ,
Joe Roe [aut] ,
Brice Lebrun [ctb] ,
Universite Bordeaux Montaigne [fnd],
CNRS [fnd]
Maintainer: Nicolas Frerebeau <nicolas.frerebeau@u-bordeaux-montaigne.fr>
Diff between aion versions 1.1.0 dated 2024-10-04 and 1.2.0 dated 2024-11-13
aion-1.1.0/aion/R/rd.R |only aion-1.1.0/aion/man/AD-class.Rd |only aion-1.1.0/aion/man/BC-class.Rd |only aion-1.1.0/aion/man/BCE-class.Rd |only aion-1.1.0/aion/man/BP-class.Rd |only aion-1.1.0/aion/man/CE-class.Rd |only aion-1.1.0/aion/man/b2k-class.Rd |only aion-1.2.0/aion/DESCRIPTION | 18 - aion-1.2.0/aion/MD5 | 117 +++---- aion-1.2.0/aion/NAMESPACE | 26 + aion-1.2.0/aion/NEWS.md | 10 aion-1.2.0/aion/R/AllClasses.R | 122 ------- aion-1.2.0/aion/R/AllGenerics.R | 6 aion-1.2.0/aion/R/aion-internal.R | 5 aion-1.2.0/aion/R/aion-package.R | 6 aion-1.2.0/aion/R/axis.R |only aion-1.2.0/aion/R/calendar-gregorian.R | 132 +++++++- aion-1.2.0/aion/R/calendar-julian.R | 122 +++++++ aion-1.2.0/aion/R/calendar.R | 82 +++-- aion-1.2.0/aion/R/intervals.R | 8 aion-1.2.0/aion/R/plot.R | 31 - aion-1.2.0/aion/R/series.R | 12 aion-1.2.0/aion/R/show.R | 84 +---- aion-1.2.0/aion/R/subset.R | 24 - aion-1.2.0/aion/R/time.R | 102 +++--- aion-1.2.0/aion/R/validate.R | 14 aion-1.2.0/aion/R/year.R | 160 ++-------- aion-1.2.0/aion/README.md | 16 - aion-1.2.0/aion/inst/doc/aion.R | 2 aion-1.2.0/aion/inst/doc/aion.Rmd | 2 aion-1.2.0/aion/inst/doc/aion.html | 47 +- aion-1.2.0/aion/inst/doc/extending.R | 13 aion-1.2.0/aion/inst/doc/extending.Rmd | 20 + aion-1.2.0/aion/inst/doc/extending.html | 33 +- aion-1.2.0/aion/inst/po |only aion-1.2.0/aion/inst/tinytest/_tinysnapshot/plot_zero_Julian.svg |only aion-1.2.0/aion/inst/tinytest/test_calendar.R | 7 aion-1.2.0/aion/inst/tinytest/test_gregorian.R | 2 aion-1.2.0/aion/inst/tinytest/test_intervals.R | 5 aion-1.2.0/aion/inst/tinytest/test_julian.R | 13 aion-1.2.0/aion/inst/tinytest/test_plot.R | 3 aion-1.2.0/aion/inst/tinytest/test_series.R | 3 aion-1.2.0/aion/inst/tinytest/test_show.R | 3 aion-1.2.0/aion/inst/tinytest/test_zero.R |only aion-1.2.0/aion/man/GregorianCalendar-class.Rd | 17 - aion-1.2.0/aion/man/JulianCalendar-class.Rd | 8 aion-1.2.0/aion/man/RataDie-class.Rd | 8 aion-1.2.0/aion/man/TimeIntervals-class.Rd | 8 aion-1.2.0/aion/man/TimeScale-class.Rd | 8 aion-1.2.0/aion/man/TimeSeries-class.Rd | 8 aion-1.2.0/aion/man/aion-package.Rd | 2 aion-1.2.0/aion/man/as_date.Rd | 9 aion-1.2.0/aion/man/as_decimal.Rd | 7 aion-1.2.0/aion/man/as_year.Rd | 9 aion-1.2.0/aion/man/calendar_get.Rd | 2 aion-1.2.0/aion/man/fixed.Rd | 6 aion-1.2.0/aion/man/format.Rd | 9 aion-1.2.0/aion/man/pretty.Rd | 2 aion-1.2.0/aion/man/start.Rd | 10 aion-1.2.0/aion/man/time.Rd | 6 aion-1.2.0/aion/man/window.Rd | 4 aion-1.2.0/aion/man/year_axis.Rd | 2 aion-1.2.0/aion/po |only aion-1.2.0/aion/vignettes/aion.Rmd | 2 aion-1.2.0/aion/vignettes/extending.Rmd | 20 + 65 files changed, 747 insertions(+), 650 deletions(-)
Title: A 'Shiny' App for Weibull Analysis
Description: A 'Shiny' web application for life data analysis that depends on 'WeibullR' by David Silkworth and Jurgen Symynck (2022)
<https://CRAN.R-project.org/package=WeibullR>, an R package for Weibull analysis.
Author: Paul Govan [aut, cre, cph]
Maintainer: Paul Govan <paul.govan2@gmail.com>
Diff between WeibullR.shiny versions 0.2.1 dated 2024-07-12 and 0.3 dated 2024-11-13
WeibullR.shiny-0.2.1/WeibullR.shiny/inst/app/rsconnect/shinyapps.io/paulgovan |only WeibullR.shiny-0.2.1/WeibullR.shiny/inst/images |only WeibullR.shiny-0.3/WeibullR.shiny/DESCRIPTION | 18 WeibullR.shiny-0.3/WeibullR.shiny/MD5 | 22 WeibullR.shiny-0.3/WeibullR.shiny/NAMESPACE | 4 WeibullR.shiny-0.3/WeibullR.shiny/R/WeibullR.shiny.R | 2 WeibullR.shiny-0.3/WeibullR.shiny/R/utils-pipe.R |only WeibullR.shiny-0.3/WeibullR.shiny/inst/app/app.R | 1421 +++++++--- WeibullR.shiny-0.3/WeibullR.shiny/inst/app/data/largeData.csv |only WeibullR.shiny-0.3/WeibullR.shiny/inst/app/data/simpleData.csv |only WeibullR.shiny-0.3/WeibullR.shiny/inst/app/dependencies.R | 6 WeibullR.shiny-0.3/WeibullR.shiny/inst/app/global.R | 6 WeibullR.shiny-0.3/WeibullR.shiny/inst/app/rsconnect/shinyapps.io/govan |only WeibullR.shiny-0.3/WeibullR.shiny/man/pipe.Rd |only 14 files changed, 1083 insertions(+), 396 deletions(-)
More information about WeibullR.shiny at CRAN
Permanent link
Title: Crawler and Data Scraper for Open Journal System ('OJS')
Description: Crawler for 'OJS' pages and scraper for meta-data from articles.
You can crawl 'OJS' archives, issues, articles, galleys, and search results.
You can scrape articles metadata from their head tag in html,
or from Open Archives Initiative ('OAI') records.
Most of these functions rely on 'OJS' routing conventions
(<https://docs.pkp.sfu.ca/dev/documentation/en/architecture-routes>).
Author: Gaston Becerra [aut, cre]
Maintainer: Gaston Becerra <gaston.becerra@gmail.com>
Diff between ojsr versions 0.1.2 dated 2020-09-23 and 0.1.5 dated 2024-11-13
ojsr-0.1.2/ojsr/R/ojsr.R |only ojsr-0.1.2/ojsr/man/ojsr.Rd |only ojsr-0.1.5/ojsr/DESCRIPTION | 15 ojsr-0.1.5/ojsr/MD5 | 46 - ojsr-0.1.5/ojsr/NAMESPACE | 24 - ojsr-0.1.5/ojsr/NEWS.md | 17 ojsr-0.1.5/ojsr/R/ojsr-package.R |only ojsr-0.1.5/ojsr/R/scrapers.R | 61 +- ojsr-0.1.5/ojsr/R/url_parsers.R | 9 ojsr-0.1.5/ojsr/README.md | 26 - ojsr-0.1.5/ojsr/build/vignette.rds |binary ojsr-0.1.5/ojsr/inst/doc/ojsr-vignette.R | 226 +++------ ojsr-0.1.5/ojsr/inst/doc/ojsr-vignette.Rmd | 168 +------ ojsr-0.1.5/ojsr/inst/doc/ojsr-vignette.html | 518 ++++++++++++---------- ojsr-0.1.5/ojsr/man/get_articles_from_issue.Rd | 53 +- ojsr-0.1.5/ojsr/man/get_articles_from_search.Rd | 66 +- ojsr-0.1.5/ojsr/man/get_galleys_from_article.Rd | 55 +- ojsr-0.1.5/ojsr/man/get_html_meta_from_article.Rd | 57 +- ojsr-0.1.5/ojsr/man/get_issues_from_archive.Rd | 55 +- ojsr-0.1.5/ojsr/man/get_oai_meta_from_article.Rd | 61 +- ojsr-0.1.5/ojsr/man/ojsr-package.Rd |only ojsr-0.1.5/ojsr/man/parse_base_url.Rd | 52 +- ojsr-0.1.5/ojsr/man/parse_oai_url.Rd | 52 +- ojsr-0.1.5/ojsr/tests/testthat/test_scrapers.R | 15 ojsr-0.1.5/ojsr/tests/testthat/test_url_parsers.R | 19 ojsr-0.1.5/ojsr/vignettes/ojsr-vignette.Rmd | 168 +------ 26 files changed, 782 insertions(+), 981 deletions(-)
Title: Non-Ordered Vectors
Description: Functionality for manipulating values of associative
maps. The package is a dependency for mvp-type
packages that use the STL map class: it traps
plausible idiom that is ill-defined (implementation-specific) and
returns an informative error, rather than returning a possibly
incorrect result. To cite the package in publications please use
Hankin (2022) <doi:10.48550/ARXIV.2210.03856>.
Author: Robin K. S. Hankin [aut, cre]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between disordR versions 0.9-8.2 dated 2024-01-13 and 0.9-8-4 dated 2024-11-13
disordR-0.9-8-4/disordR/DESCRIPTION | 17 +++++----- disordR-0.9-8-4/disordR/MD5 | 23 ++++++------- disordR-0.9-8-4/disordR/NEWS.md | 16 +++++++-- disordR-0.9-8-4/disordR/R/disordR.R | 4 ++ disordR-0.9-8-4/disordR/R/experimental_disindex.R | 11 ++++++ disordR-0.9-8-4/disordR/build/vignette.rds |binary disordR-0.9-8-4/disordR/inst/doc/disindex.html | 12 +++---- disordR-0.9-8-4/disordR/inst/doc/disordR.Rmd | 2 - disordR-0.9-8-4/disordR/inst/doc/disordR.html | 37 ++++++++++------------ disordR-0.9-8-4/disordR/man/misc.Rd | 22 ++++++++++--- disordR-0.9-8-4/disordR/tests/testthat/test_aaa.R | 4 ++ disordR-0.9-8-4/disordR/vignettes/disordR.Rmd | 2 - disordR-0.9-8.2/disordR/inst/README |only 13 files changed, 94 insertions(+), 56 deletions(-)
Title: Imputation of Missing Data in Sequence Analysis
Description: Multiple imputation of missing data present in a dataset
through the prediction based on either a random forest or a
multinomial regression model. Covariates and time-dependent covariates
can be included in the model. The prediction of the missing values is
based on the method of Halpin (2012)
<https://researchrepository.ul.ie/articles/report/Multiple_imputation_for_life-course_sequence_data/19839736>.
Author: Kevin Emery [aut, cre],
Anthony Guinchard [aut],
Andre Berchtold [aut],
Kamyar Taher [aut]
Maintainer: Kevin Emery <kevin.emery@unige.ch>
Diff between seqimpute versions 2.0.0 dated 2024-03-27 and 2.1.0 dated 2024-11-13
DESCRIPTION | 10 + MD5 | 30 ++--- NEWS.md | 27 ++++ R/SIX_FinalConversion.R | 35 ++++-- R/missings_generation.R | 54 ++++++--- R/plots.R | 222 ++++++++++++++++++++++++---------------- R/seqimpute.R | 153 ++++++++++++++++----------- R/seqimpute_timing.R | 12 -- build/vignette.rds |binary man/seqaddNA.Rd | 39 ++++--- man/seqimpute.Rd | 101 +++++++++--------- man/seqmissIplot.Rd | 34 ++++-- man/seqmissfplot.Rd | 46 +++++--- man/seqmissimplic.Rd | 27 +++- tests/testthat/test-plots.R | 63 ++++++++++- tests/testthat/test-seqimpute.R | 169 ++++++++++++++++++++++++++++++ 16 files changed, 712 insertions(+), 310 deletions(-)
Title: Worldwide or Coordinates-Based Heat Maps
Description: Easily plot heat maps of the world, based on continuous or categorical data. Country labels can also be added to the map.
Author: Luigi Annicchiarico [cre, aut]
Maintainer: Luigi Annicchiarico <luigi.annic@gmail.com>
Diff between WorldMapR versions 0.1.1 dated 2024-04-22 and 0.1.3 dated 2024-11-13
DESCRIPTION | 6 - MD5 | 30 ++--- NAMESPACE | 4 NEWS.md | 6 + R/worldplot.R | 62 ++++++----- R/worldplotCat.R | 50 ++++++--- README.md | 14 ++ build/vignette.rds |binary inst/doc/WorldMapR_Vignette.R | 96 +++++++++++++++++ inst/doc/WorldMapR_Vignette.Rmd | 213 +++++++++++++++++++++++++++++++++++---- inst/doc/WorldMapR_Vignette.html | 198 +++++++++++++++++++++++++++++++++++- man/worldplot.Rd | 32 +---- man/worldplotCat.Rd | 32 +---- tests/testthat/test1.R | 23 ++++ tests/testthat/testCat2.R | 22 ++++ vignettes/WorldMapR_Vignette.Rmd | 213 +++++++++++++++++++++++++++++++++++---- 16 files changed, 849 insertions(+), 152 deletions(-)
Title: Read and Modify 'STICS' Input/Output Files
Description: Manipulating input and output files of the 'STICS' crop
model. Files are either 'JavaSTICS' XML files or text files used by
the model 'fortran' executable. Most basic functionalities are reading
or writing parameter names and values in both XML or text input files,
and getting data from output files. Advanced functionalities include
XML files generation from XML templates and/or spreadsheets, or text
files generation from XML files by using 'xslt' transformation.
Author: Patrice Lecharpentier [aut, cre]
,
Remi Vezy [aut] ,
Samuel Buis [aut] ,
Michel Giner [aut] ,
Timothee Flutre [ctb],
Thomas Robine [ctb],
Amine Barkaoui [ctb],
Patrick Chabrier [ctb],
Julie Constantin [rev],
Dominique Ripoche [rev],
Marie Launay [rev [...truncated...]
Maintainer: Patrice Lecharpentier <patrice.lecharpentier@inrae.fr>
Diff between SticsRFiles versions 1.4.0 dated 2024-07-17 and 1.5.0 dated 2024-11-13
SticsRFiles-1.4.0/SticsRFiles/R/stics_examples_utils.R |only SticsRFiles-1.5.0/SticsRFiles/DESCRIPTION | 30 +-- SticsRFiles-1.5.0/SticsRFiles/MD5 | 55 +++--- SticsRFiles-1.5.0/SticsRFiles/NAMESPACE | 1 SticsRFiles-1.5.0/SticsRFiles/NEWS.md | 13 + SticsRFiles-1.5.0/SticsRFiles/R/gen_general_param_xml.R |only SticsRFiles-1.5.0/SticsRFiles/R/get_file.R | 4 SticsRFiles-1.5.0/SticsRFiles/R/get_usms_files.R | 3 SticsRFiles-1.5.0/SticsRFiles/R/stics_files_utils.R |only SticsRFiles-1.5.0/SticsRFiles/R/upgrade_workspace_xml.R | 80 +++++----- SticsRFiles-1.5.0/SticsRFiles/inst/doc/Generating_Stics_XML_files.R | 8 + SticsRFiles-1.5.0/SticsRFiles/inst/doc/Generating_Stics_XML_files.Rmd | 16 ++ SticsRFiles-1.5.0/SticsRFiles/inst/doc/Generating_Stics_XML_files.html | 17 ++ SticsRFiles-1.5.0/SticsRFiles/inst/doc/Generating_Stics_text_files.R | 16 +- SticsRFiles-1.5.0/SticsRFiles/inst/doc/Generating_Stics_text_files.Rmd | 18 +- SticsRFiles-1.5.0/SticsRFiles/inst/doc/Generating_Stics_text_files.html | 14 - SticsRFiles-1.5.0/SticsRFiles/inst/doc/Manipulating_Stics_XML_files.R | 16 +- SticsRFiles-1.5.0/SticsRFiles/inst/doc/Manipulating_Stics_XML_files.Rmd | 16 +- SticsRFiles-1.5.0/SticsRFiles/inst/doc/Manipulating_Stics_XML_files.html | 20 +- SticsRFiles-1.5.0/SticsRFiles/inst/doc/Manipulating_Stics_text_files.html | 6 SticsRFiles-1.5.0/SticsRFiles/inst/doc/Upgrading_STICS_XML_files.R | 8 - SticsRFiles-1.5.0/SticsRFiles/inst/doc/Upgrading_STICS_XML_files.Rmd | 12 - SticsRFiles-1.5.0/SticsRFiles/inst/doc/Upgrading_STICS_XML_files.html | 8 - SticsRFiles-1.5.0/SticsRFiles/inst/extdata/versions/stics_versions_info.csv | 1 SticsRFiles-1.5.0/SticsRFiles/man/gen_general_param_xml.Rd |only SticsRFiles-1.5.0/SticsRFiles/man/get_examples_path.Rd | 2 SticsRFiles-1.5.0/SticsRFiles/tests/testthat/test-gen_general_param_xml.R |only SticsRFiles-1.5.0/SticsRFiles/vignettes/Generating_Stics_XML_files.Rmd | 16 ++ SticsRFiles-1.5.0/SticsRFiles/vignettes/Generating_Stics_text_files.Rmd | 18 +- SticsRFiles-1.5.0/SticsRFiles/vignettes/Manipulating_Stics_XML_files.Rmd | 16 +- SticsRFiles-1.5.0/SticsRFiles/vignettes/Upgrading_STICS_XML_files.Rmd | 12 - 31 files changed, 256 insertions(+), 170 deletions(-)
Title: Accessing and Analyzing Large-Scale Environmental Data
Description: Functions are designed to facilitate access to and utility with large scale, publicly available environmental data in R. The package contains functions for downloading raw data files from web URLs (download_data()), processing the raw data files into clean spatial objects (process_covariates()), and extracting values from the spatial data objects at point and polygon locations (calculate_covariates()). These functions call a series of source-specific functions which are tailored to each data sources/datasets particular URL structure, data format, and spatial/temporal resolution. The functions are tested, versioned, and open source and open access. For sum_edc() method details, see Messier, Akita, and Serre (2012) <doi:10.1021/es203152a>.
Author: Mitchell Manware [aut, ctb] ,
Insang Song [aut, ctb] ,
Eva Marques [aut, ctb] ,
Mariana Alifa Kassien [aut, ctb]
,
Elizabeth Scholl [ctb] ,
Kyle Messier [aut, cre] ,
Spatiotemporal Exposures and Toxicology Group [cph]
Maintainer: Kyle Messier <kyle.messier@nih.gov>
Diff between amadeus versions 1.1.3 dated 2024-10-11 and 1.1.6 dated 2024-11-13
amadeus-1.1.3/amadeus/man/calc_covariates.Rd |only amadeus-1.1.3/amadeus/man/calc_ecoregion.Rd |only amadeus-1.1.3/amadeus/man/calc_geos.Rd |only amadeus-1.1.3/amadeus/man/calc_gmted.Rd |only amadeus-1.1.3/amadeus/man/calc_gridmet.Rd |only amadeus-1.1.3/amadeus/man/calc_hms.Rd |only amadeus-1.1.3/amadeus/man/calc_koppen_geiger.Rd |only amadeus-1.1.3/amadeus/man/calc_lagged.Rd |only amadeus-1.1.3/amadeus/man/calc_merra2.Rd |only amadeus-1.1.3/amadeus/man/calc_modis_daily.Rd |only amadeus-1.1.3/amadeus/man/calc_modis_par.Rd |only amadeus-1.1.3/amadeus/man/calc_narr.Rd |only amadeus-1.1.3/amadeus/man/calc_nei.Rd |only amadeus-1.1.3/amadeus/man/calc_nlcd.Rd |only amadeus-1.1.3/amadeus/man/calc_sedac_groads.Rd |only amadeus-1.1.3/amadeus/man/calc_sedac_population.Rd |only amadeus-1.1.3/amadeus/man/calc_sedc.Rd |only amadeus-1.1.3/amadeus/man/calc_temporal_dummies.Rd |only amadeus-1.1.3/amadeus/man/calc_terraclimate.Rd |only amadeus-1.1.3/amadeus/man/calc_tri.Rd |only amadeus-1.1.6/amadeus/DESCRIPTION | 10 amadeus-1.1.6/amadeus/MD5 | 134 +++--- amadeus-1.1.6/amadeus/NAMESPACE | 42 + amadeus-1.1.6/amadeus/R/calculate_covariates.R | 328 +++++++-------- amadeus-1.1.6/amadeus/R/calculate_covariates_auxiliary.R | 32 + amadeus-1.1.6/amadeus/R/download.R | 149 ++++-- amadeus-1.1.6/amadeus/R/download_auxiliary.R | 42 + amadeus-1.1.6/amadeus/R/process.R | 52 +- amadeus-1.1.6/amadeus/README.md | 65 +- amadeus-1.1.6/amadeus/build/partial.rdb |binary amadeus-1.1.6/amadeus/inst/REFERENCES.bib | 4 amadeus-1.1.6/amadeus/inst/doc/workflow.R | 2 amadeus-1.1.6/amadeus/inst/doc/workflow.Rmd | 4 amadeus-1.1.6/amadeus/inst/doc/workflow.html | 8 amadeus-1.1.6/amadeus/man/calc_prepare_locs.Rd | 3 amadeus-1.1.6/amadeus/man/calc_return_locs.Rd | 4 amadeus-1.1.6/amadeus/man/calculate_covariates.Rd |only amadeus-1.1.6/amadeus/man/calculate_ecoregion.Rd |only amadeus-1.1.6/amadeus/man/calculate_geos.Rd |only amadeus-1.1.6/amadeus/man/calculate_gmted.Rd |only amadeus-1.1.6/amadeus/man/calculate_gridmet.Rd |only amadeus-1.1.6/amadeus/man/calculate_hms.Rd |only amadeus-1.1.6/amadeus/man/calculate_koppen_geiger.Rd |only amadeus-1.1.6/amadeus/man/calculate_lagged.Rd |only amadeus-1.1.6/amadeus/man/calculate_merra2.Rd |only amadeus-1.1.6/amadeus/man/calculate_modis_daily.Rd |only amadeus-1.1.6/amadeus/man/calculate_modis_par.Rd |only amadeus-1.1.6/amadeus/man/calculate_narr.Rd |only amadeus-1.1.6/amadeus/man/calculate_nei.Rd |only amadeus-1.1.6/amadeus/man/calculate_nlcd.Rd |only amadeus-1.1.6/amadeus/man/calculate_sedac_groads.Rd |only amadeus-1.1.6/amadeus/man/calculate_sedac_population.Rd |only amadeus-1.1.6/amadeus/man/calculate_temporal_dummies.Rd |only amadeus-1.1.6/amadeus/man/calculate_terraclimate.Rd |only amadeus-1.1.6/amadeus/man/calculate_tri.Rd |only amadeus-1.1.6/amadeus/man/check_destfile.Rd |only amadeus-1.1.6/amadeus/man/check_geom.Rd |only amadeus-1.1.6/amadeus/man/download_aqs.Rd | 2 amadeus-1.1.6/amadeus/man/download_cropscape.Rd | 2 amadeus-1.1.6/amadeus/man/download_data.Rd | 2 amadeus-1.1.6/amadeus/man/download_ecoregion.Rd | 2 amadeus-1.1.6/amadeus/man/download_geos.Rd | 2 amadeus-1.1.6/amadeus/man/download_gmted.Rd | 2 amadeus-1.1.6/amadeus/man/download_gridmet.Rd | 2 amadeus-1.1.6/amadeus/man/download_hash.Rd | 9 amadeus-1.1.6/amadeus/man/download_hms.Rd | 2 amadeus-1.1.6/amadeus/man/download_huc.Rd | 2 amadeus-1.1.6/amadeus/man/download_koppen_geiger.Rd | 2 amadeus-1.1.6/amadeus/man/download_merra2.Rd | 2 amadeus-1.1.6/amadeus/man/download_narr.Rd | 2 amadeus-1.1.6/amadeus/man/download_nei.Rd | 2 amadeus-1.1.6/amadeus/man/download_nlcd.Rd | 2 amadeus-1.1.6/amadeus/man/download_prism.Rd | 2 amadeus-1.1.6/amadeus/man/download_sedac_groads.Rd | 4 amadeus-1.1.6/amadeus/man/download_sedac_population.Rd | 4 amadeus-1.1.6/amadeus/man/download_terraclimate.Rd | 2 amadeus-1.1.6/amadeus/man/download_tri.Rd | 2 amadeus-1.1.6/amadeus/man/process_aqs.Rd | 2 amadeus-1.1.6/amadeus/man/process_covariates.Rd | 2 amadeus-1.1.6/amadeus/man/process_geos.Rd | 5 amadeus-1.1.6/amadeus/man/process_gridmet.Rd | 5 amadeus-1.1.6/amadeus/man/process_hms.Rd | 10 amadeus-1.1.6/amadeus/man/process_merra2.Rd | 5 amadeus-1.1.6/amadeus/man/process_modis_sds.Rd | 2 amadeus-1.1.6/amadeus/man/process_narr.Rd | 7 amadeus-1.1.6/amadeus/man/process_sedac_groads.Rd | 2 amadeus-1.1.6/amadeus/man/process_terraclimate.Rd | 5 amadeus-1.1.6/amadeus/man/sum_edc.Rd |only amadeus-1.1.6/amadeus/vignettes/workflow.Rmd | 4 89 files changed, 571 insertions(+), 408 deletions(-)
Title: Classical k-gram Language Models
Description: Training and evaluating k-gram language models in R,
supporting several probability smoothing techniques,
perplexity computations, random text generation and more.
Author: Valerio Gherardi [aut, cre]
Maintainer: Valerio Gherardi <vgherard840@gmail.com>
Diff between kgrams versions 0.2.0 dated 2023-10-06 and 0.2.1 dated 2024-11-13
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS.md | 4 ++++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/kgrams.R | 4 ++-- inst/doc/kgrams.html | 9 +++++---- 7 files changed, 22 insertions(+), 17 deletions(-)
Title: Interface with Google Cloud Document AI API
Description: R interface for the Google Cloud Services 'Document AI API'
<https://cloud.google.com/document-ai/> with additional tools for
output file parsing and text reconstruction. 'Document AI' is a
powerful server-based OCR service that extracts text and tables from
images and PDF files with high accuracy. 'daiR' gives R users
programmatic access to this service and additional tools to handle
and visualize the output. See the package website <https://dair.info/>
for more information and examples.
Author: Thomas Hegghammer [aut, cre]
Maintainer: Thomas Hegghammer <hegghammer@gmail.com>
Diff between daiR versions 1.0.0 dated 2024-02-11 and 1.0.1 dated 2024-11-13
daiR-1.0.0/daiR/vignettes/extracting_tables.html |only daiR-1.0.1/daiR/DESCRIPTION | 8 daiR-1.0.1/daiR/MD5 | 65 daiR-1.0.1/daiR/NEWS.md | 3 daiR-1.0.1/daiR/R/draw.R | 2 daiR-1.0.1/daiR/R/manipulate.R | 50 daiR-1.0.1/daiR/R/processors.R | 18 daiR-1.0.1/daiR/R/send_to_dai.R | 211 - daiR-1.0.1/daiR/R/utils.R | 54 daiR-1.0.1/daiR/R/xml.R | 3 daiR-1.0.1/daiR/build/vignette.rds |binary daiR-1.0.1/daiR/inst/doc/complex_file_and_folder_management.html | 2 daiR-1.0.1/daiR/inst/doc/configuration.Rmd | 6 daiR-1.0.1/daiR/inst/doc/configuration.html | 24 daiR-1.0.1/daiR/inst/doc/gcs_storage.Rmd | 2 daiR-1.0.1/daiR/inst/doc/gcs_storage.html | 4 daiR-1.0.1/daiR/inst/doc/quickstart.Rmd | 2 daiR-1.0.1/daiR/inst/doc/quickstart.html | 5 daiR-1.0.1/daiR/inst/doc/reconstructing_text.Rmd | 2 daiR-1.0.1/daiR/inst/doc/reconstructing_text.html | 18 daiR-1.0.1/daiR/inst/doc/tables.html | 6 daiR-1.0.1/daiR/inst/doc/usage.html | 2 daiR-1.0.1/daiR/man/dai_sync.Rd | 4 daiR-1.0.1/daiR/man/from_labelme.Rd | 2 daiR-1.0.1/daiR/tests/testthat.R | 1 daiR-1.0.1/daiR/tests/testthat/test_draw.R | 1274 ++++++---- daiR-1.0.1/daiR/tests/testthat/test_extract.R | 52 daiR-1.0.1/daiR/tests/testthat/test_processors.R | 28 daiR-1.0.1/daiR/tests/testthat/test_send_to_dai.R | 28 daiR-1.0.1/daiR/tests/testthat/test_zzz.R | 5 daiR-1.0.1/daiR/vignettes/configuration.Rmd | 6 daiR-1.0.1/daiR/vignettes/gcs_storage.Rmd | 2 daiR-1.0.1/daiR/vignettes/quickstart.Rmd | 2 daiR-1.0.1/daiR/vignettes/reconstructing_text.Rmd | 2 34 files changed, 1127 insertions(+), 766 deletions(-)
Title: Connect to an OMOP Common Data Model
Description: Provides tools for working with observational health data in the
Observational Medical Outcomes Partnership (OMOP) Common Data Model format with a pipe friendly syntax.
Common data model database table references are stored in a single compound object along with metadata.
Author: Adam Black [aut, cre] ,
Artem Gorbachev [aut],
Edward Burn [aut],
Marti Catala Sabate [aut]
Maintainer: Adam Black <black@ohdsi.org>
Diff between CDMConnector versions 1.5.0 dated 2024-07-16 and 1.6.0 dated 2024-11-13
CDMConnector-1.5.0/CDMConnector/inst/cohorts3/gibleed_all.json |only CDMConnector-1.5.0/CDMConnector/inst/cohorts3/gibleed_default.json |only CDMConnector-1.5.0/CDMConnector/inst/cohorts3/gibleed_default_with_descendants.json |only CDMConnector-1.6.0/CDMConnector/DESCRIPTION | 14 CDMConnector-1.6.0/CDMConnector/MD5 | 88 CDMConnector-1.6.0/CDMConnector/NAMESPACE | 2 CDMConnector-1.6.0/CDMConnector/NEWS.md | 6 CDMConnector-1.6.0/CDMConnector/R/Eunomia.R | 134 - CDMConnector-1.6.0/CDMConnector/R/cdm.R | 69 CDMConnector-1.6.0/CDMConnector/R/cohort_ddl.R | 3 CDMConnector-1.6.0/CDMConnector/R/generateCohortSet.R | 59 CDMConnector-1.6.0/CDMConnector/R/generateConceptCohortSet.R | 13 CDMConnector-1.6.0/CDMConnector/R/reexports-omopgenerics.R | 9 CDMConnector-1.6.0/CDMConnector/R/utils.R | 2 CDMConnector-1.6.0/CDMConnector/README.md | 18 CDMConnector-1.6.0/CDMConnector/build/vignette.rds |binary CDMConnector-1.6.0/CDMConnector/inst/cohorts3/GiBleed_all.json |only CDMConnector-1.6.0/CDMConnector/inst/cohorts3/GiBleed_default.json |only CDMConnector-1.6.0/CDMConnector/inst/cohorts3/GiBleed_default_with_descendants.json |only CDMConnector-1.6.0/CDMConnector/inst/doc/a01_getting-started.Rmd | 2 CDMConnector-1.6.0/CDMConnector/inst/doc/a01_getting-started.html | 739 +++--- CDMConnector-1.6.0/CDMConnector/inst/doc/a02_cohorts.Rmd | 2 CDMConnector-1.6.0/CDMConnector/inst/doc/a02_cohorts.html | 617 ++--- CDMConnector-1.6.0/CDMConnector/inst/doc/a03_dbplyr.html | 2 CDMConnector-1.6.0/CDMConnector/inst/doc/a04_DBI_connection_examples.html | 2 CDMConnector-1.6.0/CDMConnector/inst/doc/a05_cdm_reference_backends.html | 2 CDMConnector-1.6.0/CDMConnector/inst/doc/a06_using_cdm_attributes.html | 249 +- CDMConnector-1.6.0/CDMConnector/man/cdm_from_con.Rd | 29 CDMConnector-1.6.0/CDMConnector/man/cdm_from_tables.Rd | 9 CDMConnector-1.6.0/CDMConnector/man/eunomiaDir.Rd | 54 CDMConnector-1.6.0/CDMConnector/man/generateCohortSet.Rd | 3 CDMConnector-1.6.0/CDMConnector/man/requireEunomia.Rd |only CDMConnector-1.6.0/CDMConnector/tests/testthat/old_tests/test-cdm.R | 1217 +++++----- CDMConnector-1.6.0/CDMConnector/tests/testthat/setup.R | 6 CDMConnector-1.6.0/CDMConnector/tests/testthat/test-01-db-DBI.R | 16 CDMConnector-1.6.0/CDMConnector/tests/testthat/test-02-db-cdm.R | 217 - CDMConnector-1.6.0/CDMConnector/tests/testthat/test-03-db-generateCohortSet.R | 13 CDMConnector-1.6.0/CDMConnector/tests/testthat/test-04-db-generateConceptCohortSet.R | 27 CDMConnector-1.6.0/CDMConnector/tests/testthat/test-06-db-compute.R | 25 CDMConnector-1.6.0/CDMConnector/tests/testthat/test-13-db-custom_cohort_creation.R | 6 CDMConnector-1.6.0/CDMConnector/tests/testthat/test-18-db-newGeneratedCohortSet.R | 24 CDMConnector-1.6.0/CDMConnector/tests/testthat/test-Eunomia.R | 28 CDMConnector-1.6.0/CDMConnector/tests/testthat/test-cohort-reconnect.R | 2 CDMConnector-1.6.0/CDMConnector/tests/testthat/test-db-example-analysis.R | 2 CDMConnector-1.6.0/CDMConnector/tests/testthat/test-db-utils.R | 3 CDMConnector-1.6.0/CDMConnector/tests/testthat/test-local_cdm.R | 2 CDMConnector-1.6.0/CDMConnector/tests/testthat/test-write_prefix.r |only CDMConnector-1.6.0/CDMConnector/vignettes/a01_getting-started.Rmd | 2 CDMConnector-1.6.0/CDMConnector/vignettes/a02_cohorts.Rmd | 2 49 files changed, 1987 insertions(+), 1732 deletions(-)
Title: Statistical Analysis of Textual Data
Description: Provides a set of functions devoted to multivariate exploratory statistics on textual data. Classical methods such as correspondence analysis and agglomerative hierarchical clustering are available. Chronologically constrained agglomerative hierarchical clustering enriched with labelled-by-words trees is offered. Given a division of the corpus into parts, their characteristic words and documents are identified. Further, accessing to 'FactoMineR' functions is very easy. Two of them are relevant in textual domain. MFA() addresses multiple lexical table allowing applications such as dealing with multilingual corpora as well as simultaneously analyzing both open-ended and closed questions in surveys. See <http://xplortext.unileon.es> for examples.
Author: Ramon Alvarez-Esteban [aut, cre]
,
Monica Becue-Bertaut [aut] ,
Josep-Anton Sanchez-Espigares [ctb]
,
Belchin Adriyanov Kostov [ctb]
Maintainer: Ramon Alvarez-Esteban <ramon.alvarez@unileon.es>
Diff between Xplortext versions 1.5.4 dated 2024-11-06 and 1.5.5 dated 2024-11-13
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NAMESPACE | 3 +++ R/summary.TextData.R | 14 +++----------- build/partial.rdb |binary inst/Xplortext.pdf |binary man/Xplortext-package.Rd | 2 +- 7 files changed, 17 insertions(+), 22 deletions(-)
Title: Shared Memory Atomic Operations
Description: Implements named semaphores from the 'boost' 'C++' library
<https://www.boost.org/>. A semaphore object is shared amongst several
processes. This integer value can be safely incremented or decremented by
each processes. Processes can also wait (blocking) for the value to become
non-zero.
Author: Daniel P. Smith [aut, cre] ,
Alkek Center for Metagenomics and Microbiome Research [cph, fnd]
Maintainer: Daniel P. Smith <dansmith01@gmail.com>
Diff between semaphore versions 1.0.1 dated 2024-11-11 and 1.0.2 dated 2024-11-13
DESCRIPTION | 11 +++++------ MD5 | 10 +++++----- NEWS.md | 6 ++++++ R/semaphore.r | 4 ++-- R/zzz.r | 6 ++++-- README.md | 2 +- 6 files changed, 23 insertions(+), 16 deletions(-)
Title: Programming with Big Data -- Scalable Linear Algebra Packages
Description: Utilizing scalable linear algebra packages mainly
including 'BLACS', 'PBLAS', and 'ScaLAPACK' in double precision via
'pbdMPI' based on 'ScaLAPACK' version 2.0.2.
Author: Wei-Chen Chen [aut, cre],
Drew Schmidt [aut],
George Ostrouchov [aut],
Pragneshkumar Patel [aut],
Brian Ripley [ctb]
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between pbdSLAP versions 0.3-6 dated 2024-10-30 and 0.3-7 dated 2024-11-13
ChangeLog | 8 +++++++- DESCRIPTION | 8 ++++---- MD5 | 28 ++++++++++++++-------------- src/BLACS/Makefile | 2 +- src/Makevars.in | 10 +++++----- src/PBLAS/Makefile | 14 +++++++++----- src/PBLAS/PBBLAS/Makefile | 4 +++- src/PBLAS/PTOOLS/Makefile | 4 +++- src/PBLAS/PTZBLAS/Makefile | 6 ++++-- src/REDIST/Makefile | 4 +++- src/SLmake.inc.org | 3 ++- src/SLmake.inc.win | 3 ++- src/ScaLAPACK/Makefile | 7 +++++-- src/TOOLS/LAPACK/Makefile | 8 ++++++-- src/TOOLS/Makefile | 12 ++++++++---- 15 files changed, 76 insertions(+), 45 deletions(-)
Title: Addons for the 'mclust' Package
Description: Extend the functionality of the 'mclust' package for Gaussian
finite mixture modeling by including: density estimation for data with
bounded support (Scrucca, 2019 <doi:10.1002/bimj.201800174>); modal
clustering using MEM (Modal EM) algorithm for Gaussian mixtures
(Scrucca, 2021 <doi:10.1002/sam.11527>); entropy estimation via
Gaussian mixture modeling (Robin & Scrucca, 2023
<doi:10.1016/j.csda.2022.107582>); Gaussian mixtures modeling of
financial log-returns (Scrucca, 2024 <doi:10.3390/e26110907>).
Author: Luca Scrucca [aut, cre, cph]
Maintainer: Luca Scrucca <luca.scrucca@unibo.it>
Diff between mclustAddons versions 0.9 dated 2024-09-20 and 0.9.1 dated 2024-11-13
DESCRIPTION | 16 ++-- MD5 | 32 ++++----- NEWS.md | 9 ++ R/GMM_finance.R | 32 ++++----- R/MclustBounded.R | 4 - R/densityMclustBounded.R | 31 +++++++- R/mclustAddons-package.R | 24 ++++++ build/partial.rdb |binary build/vignette.rds |binary data/gold.rda |only inst/doc/mclustAddons.R | 21 ++++++ inst/doc/mclustAddons.Rmd | 26 +++++++ inst/doc/mclustAddons.html | 153 ++++++++++++++++++++++++++++++-------------- man/GMMlogreturn.Rd | 20 ++--- man/densityMclustBounded.Rd | 4 + man/gold.Rd |only man/mclustAddons-package.Rd | 2 vignettes/mclustAddons.Rmd | 26 +++++++ 18 files changed, 293 insertions(+), 107 deletions(-)
Title: Nonparametric Preprocessing for Parametric Causal Inference
Description: Selects matched samples of the original treated and
control groups with similar covariate distributions -- can be
used to match exactly on covariates, to match on propensity
scores, or perform a variety of other matching procedures. The
package also implements a series of recommendations offered in
Ho, Imai, King, and Stuart (2007) <DOI:10.1093/pan/mpl013>. (The
'gurobi' package, which is not on CRAN, is optional and comes with
an installation of the Gurobi Optimizer, available at
<https://www.gurobi.com>.)
Author: Daniel Ho [aut] ,
Kosuke Imai [aut] ,
Gary King [aut] ,
Elizabeth Stuart [aut] ,
Alex Whitworth [ctb],
Noah Greifer [cre, aut]
Maintainer: Noah Greifer <noah.greifer@gmail.com>
Diff between MatchIt versions 4.5.5 dated 2023-10-13 and 4.6.0 dated 2024-11-13
MatchIt-4.5.5/MatchIt/build/MatchIt.pdf |only MatchIt-4.5.5/MatchIt/inst/doc/MatchIt.R |only MatchIt-4.5.5/MatchIt/inst/doc/assessing-balance.R |only MatchIt-4.5.5/MatchIt/inst/doc/estimating-effects.R |only MatchIt-4.5.5/MatchIt/inst/doc/matching-methods.R |only MatchIt-4.5.5/MatchIt/inst/doc/sampling-weights.R |only MatchIt-4.5.5/MatchIt/src/dist_to_matrix.cpp |only MatchIt-4.5.5/MatchIt/src/energy_match.cpp |only MatchIt-4.5.5/MatchIt/src/nn_matchC.cpp |only MatchIt-4.5.5/MatchIt/src/nn_matchC_closest.cpp |only MatchIt-4.6.0/MatchIt/DESCRIPTION | 20 MatchIt-4.6.0/MatchIt/MD5 | 148 +-- MatchIt-4.6.0/MatchIt/NAMESPACE | 4 MatchIt-4.6.0/MatchIt/NEWS.md | 30 MatchIt-4.6.0/MatchIt/R/MatchIt-package.R | 5 MatchIt-4.6.0/MatchIt/R/RcppExports.R | 60 - MatchIt-4.6.0/MatchIt/R/add_s.weights.R | 107 +- MatchIt-4.6.0/MatchIt/R/aux_functions.R | 670 ++----------- MatchIt-4.6.0/MatchIt/R/discard.R | 10 MatchIt-4.6.0/MatchIt/R/dist_functions.R | 116 +- MatchIt-4.6.0/MatchIt/R/distance2_methods.R | 236 ++-- MatchIt-4.6.0/MatchIt/R/get_weights_from_mm.R | 21 MatchIt-4.6.0/MatchIt/R/get_weights_from_subclass.R | 68 - MatchIt-4.6.0/MatchIt/R/input_processing.R | 345 ++++--- MatchIt-4.6.0/MatchIt/R/match.data.R | 79 - MatchIt-4.6.0/MatchIt/R/match.qoi.R | 71 - MatchIt-4.6.0/MatchIt/R/matchit.R | 389 ++++---- MatchIt-4.6.0/MatchIt/R/matchit2cardinality.R | 173 +-- MatchIt-4.6.0/MatchIt/R/matchit2cem.R | 299 +++--- MatchIt-4.6.0/MatchIt/R/matchit2exact.R | 17 MatchIt-4.6.0/MatchIt/R/matchit2full.R | 87 + MatchIt-4.6.0/MatchIt/R/matchit2genetic.R | 100 +- MatchIt-4.6.0/MatchIt/R/matchit2nearest.R | 418 ++++---- MatchIt-4.6.0/MatchIt/R/matchit2optimal.R | 95 + MatchIt-4.6.0/MatchIt/R/matchit2quick.R | 53 - MatchIt-4.6.0/MatchIt/R/matchit2subclass.R | 47 MatchIt-4.6.0/MatchIt/R/plot.matchit.R | 277 +++-- MatchIt-4.6.0/MatchIt/R/plot.summary.matchit.R | 10 MatchIt-4.6.0/MatchIt/R/rbind.matchdata.R | 48 MatchIt-4.6.0/MatchIt/R/summary.matchit.R | 235 ++-- MatchIt-4.6.0/MatchIt/R/utils.R |only MatchIt-4.6.0/MatchIt/build/stage23.rdb |binary MatchIt-4.6.0/MatchIt/build/vignette.rds |binary MatchIt-4.6.0/MatchIt/inst/doc/MatchIt.Rmd | 2 MatchIt-4.6.0/MatchIt/inst/doc/MatchIt.html | 70 - MatchIt-4.6.0/MatchIt/inst/doc/assessing-balance.Rmd | 4 MatchIt-4.6.0/MatchIt/inst/doc/assessing-balance.html | 47 MatchIt-4.6.0/MatchIt/inst/doc/estimating-effects.Rmd | 52 - MatchIt-4.6.0/MatchIt/inst/doc/estimating-effects.html | 168 +-- MatchIt-4.6.0/MatchIt/inst/doc/matching-methods.Rmd | 20 MatchIt-4.6.0/MatchIt/inst/doc/matching-methods.html | 109 +- MatchIt-4.6.0/MatchIt/inst/doc/sampling-weights.Rmd | 35 MatchIt-4.6.0/MatchIt/inst/doc/sampling-weights.html | 112 +- MatchIt-4.6.0/MatchIt/man/distance.Rd | 87 - MatchIt-4.6.0/MatchIt/man/mahalanobis_dist.Rd | 5 MatchIt-4.6.0/MatchIt/man/matchit.Rd | 133 +- MatchIt-4.6.0/MatchIt/man/method_cem.Rd | 24 MatchIt-4.6.0/MatchIt/man/method_full.Rd | 2 MatchIt-4.6.0/MatchIt/man/method_genetic.Rd | 7 MatchIt-4.6.0/MatchIt/man/method_nearest.Rd | 39 MatchIt-4.6.0/MatchIt/man/method_optimal.Rd | 2 MatchIt-4.6.0/MatchIt/src/RcppExports.cpp | 237 +++- MatchIt-4.6.0/MatchIt/src/all_equal_to.cpp |only MatchIt-4.6.0/MatchIt/src/eta_progress_bar.h |only MatchIt-4.6.0/MatchIt/src/eucdistC.cpp |only MatchIt-4.6.0/MatchIt/src/get_splitsC.cpp |only MatchIt-4.6.0/MatchIt/src/has_n_unique.cpp |only MatchIt-4.6.0/MatchIt/src/internal.cpp | 778 +++++++++++++++- MatchIt-4.6.0/MatchIt/src/internal.h | 106 ++ MatchIt-4.6.0/MatchIt/src/nn_matchC_distmat.cpp |only MatchIt-4.6.0/MatchIt/src/nn_matchC_distmat_closest.cpp |only MatchIt-4.6.0/MatchIt/src/nn_matchC_mahcovs.cpp |only MatchIt-4.6.0/MatchIt/src/nn_matchC_mahcovs_closest.cpp |only MatchIt-4.6.0/MatchIt/src/nn_matchC_vec.cpp | 622 +++++------- MatchIt-4.6.0/MatchIt/src/nn_matchC_vec_closest.cpp |only MatchIt-4.6.0/MatchIt/src/pairdistC.cpp | 54 - MatchIt-4.6.0/MatchIt/src/subclass2mm.cpp | 126 ++ MatchIt-4.6.0/MatchIt/src/subclass_scootC.cpp |only MatchIt-4.6.0/MatchIt/src/tabulateC.cpp | 6 MatchIt-4.6.0/MatchIt/src/weights_matrixC.cpp | 86 - MatchIt-4.6.0/MatchIt/vignettes/MatchIt.Rmd | 2 MatchIt-4.6.0/MatchIt/vignettes/assessing-balance.Rmd | 4 MatchIt-4.6.0/MatchIt/vignettes/estimating-effects.Rmd | 52 - MatchIt-4.6.0/MatchIt/vignettes/matching-methods.Rmd | 20 MatchIt-4.6.0/MatchIt/vignettes/references.bib | 14 MatchIt-4.6.0/MatchIt/vignettes/sampling-weights.Rmd | 35 86 files changed, 4241 insertions(+), 3057 deletions(-)
Title: Fast Numerical Maximum Likelihood Estimation for Latent Markov
Models
Description: A variety of latent Markov models, including hidden Markov models, hidden semi-Markov models,
state-space models and continuous-time variants can be formulated and estimated within the same framework via directly maximising the likelihood function using the so-called forward algorithm.
Applied researchers often need custom models that standard software does not easily support.
Writing tailored 'R' code offers flexibility but suffers from slow estimation speeds.
We address these issues by providing easy-to-use functions (written in 'C++' for speed) for common tasks like the forward algorithm.
These functions can be combined into custom models in a Lego-type approach, offering up to 10-20 times faster estimation via standard numerical optimisers.
To aid in building fully custom likelihood functions, several vignettes are included that show how to simulate data from and estimate all the above model classes.
Author: Jan-Ole Koslik [aut, cre]
Maintainer: Jan-Ole Koslik <jan-ole.koslik@uni-bielefeld.de>
Diff between LaMa versions 2.0.0 dated 2024-11-12 and 2.0.1 dated 2024-11-13
LaMa-2.0.0/LaMa/vignettes/HSMMs_cache/html/model_muskox_8d66ebbf71b767fb18ffb63472aea360.RData |only LaMa-2.0.0/LaMa/vignettes/HSMMs_cache/html/model_muskox_8d66ebbf71b767fb18ffb63472aea360.rdb |only LaMa-2.0.0/LaMa/vignettes/HSMMs_cache/html/model_muskox_8d66ebbf71b767fb18ffb63472aea360.rdx |only LaMa-2.0.0/LaMa/vignettes/Longitudinal_data_cache/html/model_pool_248ab3343177e7e0defe2fd7d0514f57.RData |only LaMa-2.0.0/LaMa/vignettes/Longitudinal_data_cache/html/model_pool_248ab3343177e7e0defe2fd7d0514f57.rdb |only LaMa-2.0.0/LaMa/vignettes/Longitudinal_data_cache/html/model_pool_248ab3343177e7e0defe2fd7d0514f57.rdx |only LaMa-2.0.0/LaMa/vignettes/State_space_models_cache/html/model_5ee2e12d8e8a9fd4abade211c313324f.RData |only LaMa-2.0.0/LaMa/vignettes/State_space_models_cache/html/model_5ee2e12d8e8a9fd4abade211c313324f.rdb |only LaMa-2.0.0/LaMa/vignettes/State_space_models_cache/html/model_5ee2e12d8e8a9fd4abade211c313324f.rdx |only LaMa-2.0.1/LaMa/DESCRIPTION | 6 - LaMa-2.0.1/LaMa/MD5 | 40 +++++----- LaMa-2.0.1/LaMa/R/qreml_functions.R | 2 LaMa-2.0.1/LaMa/inst/doc/Continuous_time_HMMs.html | 4 - LaMa-2.0.1/LaMa/inst/doc/HSMMs.html | 4 - LaMa-2.0.1/LaMa/inst/doc/Inhomogeneous_HMMs.html | 4 - LaMa-2.0.1/LaMa/inst/doc/Intro_to_LaMa.html | 2 LaMa-2.0.1/LaMa/inst/doc/Longitudinal_data.html | 6 - LaMa-2.0.1/LaMa/inst/doc/MMMPPs.html | 4 - LaMa-2.0.1/LaMa/inst/doc/Penalised_splines.html | 6 - LaMa-2.0.1/LaMa/inst/doc/Periodic_HMMs.html | 2 LaMa-2.0.1/LaMa/inst/doc/State_space_models.html | 2 LaMa-2.0.1/LaMa/vignettes/HSMMs_cache/html/model_muskox_77fd183fbf3a0b18e8b2fde0ac87056d.RData |only LaMa-2.0.1/LaMa/vignettes/HSMMs_cache/html/model_muskox_77fd183fbf3a0b18e8b2fde0ac87056d.rdb |only LaMa-2.0.1/LaMa/vignettes/HSMMs_cache/html/model_muskox_77fd183fbf3a0b18e8b2fde0ac87056d.rdx |only LaMa-2.0.1/LaMa/vignettes/Longitudinal_data_cache/html/model_pool_278dc24685c286b1974a9aec6899b982.RData |only LaMa-2.0.1/LaMa/vignettes/Longitudinal_data_cache/html/model_pool_278dc24685c286b1974a9aec6899b982.rdb |only LaMa-2.0.1/LaMa/vignettes/Longitudinal_data_cache/html/model_pool_278dc24685c286b1974a9aec6899b982.rdx |only LaMa-2.0.1/LaMa/vignettes/State_space_models_cache/html/model_a83c08ae12caff79d6f80b66561349bf.RData |only LaMa-2.0.1/LaMa/vignettes/State_space_models_cache/html/model_a83c08ae12caff79d6f80b66561349bf.rdb |only LaMa-2.0.1/LaMa/vignettes/State_space_models_cache/html/model_a83c08ae12caff79d6f80b66561349bf.rdx |only 30 files changed, 41 insertions(+), 41 deletions(-)
Title: N-Gram Based Text Categorization
Description: Text categorization based on n-grams.
Author: Kurt Hornik [aut, cre] ,
Johannes Rauch [aut],
Christian Buchta [aut],
Ingo Feinerer [aut]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between textcat versions 1.0-8 dated 2023-01-31 and 1.0-9 dated 2024-11-13
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- build/partial.rdb |binary data/ECIMCI_profiles.rda |binary data/TC_byte_profiles.rda |binary data/TC_char_profiles.rda |binary man/ECIMCI_profiles.Rd | 2 +- man/TC_profiles.Rd | 6 +++--- man/textcat_profile_db.Rd | 2 +- 9 files changed, 16 insertions(+), 16 deletions(-)
Title: Sparse Lightweight Arrays and Matrices
Description: Data structures and algorithms for sparse arrays and matrices,
based on index arrays and simple triplet representations, respectively.
Author: Kurt Hornik [aut, cre] ,
David Meyer [aut] ,
Christian Buchta [aut]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between slam versions 0.1-54 dated 2024-10-15 and 0.1-55 dated 2024-11-13
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- man/array.Rd | 1 + man/foreign.Rd | 8 ++++---- man/matrix.Rd | 1 + 5 files changed, 13 insertions(+), 11 deletions(-)
Title: Spherical k-Means Clustering
Description: Algorithms to compute spherical k-means partitions.
Features several methods, including a genetic and a fixed-point
algorithm and an interface to the CLUTO vcluster program.
Author: Kurt Hornik [aut, cre] ,
Ingo Feinerer [aut] ,
Martin Kober [aut]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between skmeans versions 0.2-17 dated 2024-09-02 and 0.2-18 dated 2024-11-13
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- build/partial.rdb |binary man/skmeans.Rd | 2 +- man/skmeans_xdist.Rd | 2 +- 5 files changed, 9 insertions(+), 9 deletions(-)
Title: Data Structures and Algorithms for Relations
Description: Data structures and algorithms for k-ary relations with
arbitrary domains, featuring relational algebra, predicate functions,
and fitters for consensus relations.
Author: David Meyer [aut],
Kurt Hornik [aut, cre] ,
Christian Buchta [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between relations versions 0.6-13 dated 2023-03-07 and 0.6-14 dated 2024-11-13
DESCRIPTION | 6 ++-- MD5 | 26 ++++++++++----------- build/partial.rdb |binary build/vignette.rds |binary data/Cetacea.rda |binary data/Felines.rda |binary data/SVM_Benchmarking_Classification.rda |binary data/SVM_Benchmarking_Classification_Consensus.rda |binary data/SVM_Benchmarking_Regression.rda |binary data/SVM_Benchmarking_Regression_Consensus.rda |binary inst/doc/relations.pdf |binary man/pclust.Rd | 2 - man/plot.Rd | 6 ++-- man/reduction.Rd | 2 - 14 files changed, 21 insertions(+), 21 deletions(-)
Title: Harvest Metadata Using OAI-PMH Version 2.0
Description: Harvest metadata using the Open Archives Initiative Protocol for Metadata
Harvesting (OAI-PMH) version 2.0 (for more information, see
<https://www.openarchives.org/OAI/openarchivesprotocol.html>).
Author: Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between OAIHarvester versions 0.3-4 dated 2023-01-31 and 0.3-5 dated 2024-11-13
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- build/vignette.rds |binary inst/doc/oaih.pdf |binary man/harvest.Rd | 2 +- man/size.Rd | 2 +- 6 files changed, 10 insertions(+), 10 deletions(-)
Title: Natural Language Processing Infrastructure
Description: Basic classes and methods for Natural Language Processing.
Author: Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between NLP versions 0.3-0 dated 2024-08-05 and 0.3-1 dated 2024-11-13
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- R/conllu.R | 38 ++++++++++++++++++++++++++++++++------ R/sysdata.rda |binary build/partial.rdb |binary man/CoNLLTextDocument.Rd | 3 ++- man/CoNLLUTextDocument.Rd | 30 +++++++++++++++++++++--------- man/TaggedTextDocument.Rd | 2 +- man/language.Rd | 1 + man/viewers.Rd | 6 +++--- 10 files changed, 73 insertions(+), 33 deletions(-)
Title: Mixtures of von Mises-Fisher Distributions
Description: Fit and simulate mixtures of von Mises-Fisher distributions.
Author: Kurt Hornik [aut, cre] ,
Bettina Gruen [aut]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between movMF versions 0.2-8 dated 2024-01-09 and 0.2-9 dated 2024-11-13
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- build/partial.rdb |binary build/vignette.rds |binary data/useR_2008_abstracts.rda |binary inst/doc/movMF.pdf |binary man/FLXMCvMF.Rd | 12 ++++++------ man/movMF.Rd | 2 +- 8 files changed, 17 insertions(+), 17 deletions(-)
Title: Cluster Ensembles
Description: CLUster Ensembles.
Author: Kurt Hornik [aut, cre] ,
Walter Boehm [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between clue versions 0.3-65 dated 2023-09-23 and 0.3-66 dated 2024-11-13
DESCRIPTION | 6 +++--- MD5 | 26 +++++++++++++------------- build/partial.rdb |binary build/vignette.rds |binary data/CKME.rda |binary data/Cassini.rda |binary data/GVME.rda |binary data/GVME_Consensus.rda |binary data/Kinship82.rda |binary data/Kinship82_Consensus.rda |binary data/Phonemes.rda |binary inst/doc/clue.pdf |binary man/cl_bag.Rd | 2 +- man/cl_validity.Rd | 2 +- 14 files changed, 18 insertions(+), 18 deletions(-)
Title: Gaussian Process Modelling in 'greta'
Description: Provides a syntax to create and combine Gaussian process kernels
in 'greta'. You can then them to define either full rank or sparse Gaussian
processes. This is an extension to the 'greta' software, Golding (2019)
<doi:10.21105/joss.01601>.
Author: Nick Golding [aut, cph] ,
Jian Yen [ctb],
Nicholas Tierney [aut, cre]
Maintainer: Nicholas Tierney <nicholas.tierney@gmail.com>
Diff between greta.gp versions 0.2.1 dated 2024-01-29 and 0.2.2 dated 2024-11-13
DESCRIPTION | 18 +++--- MD5 | 28 +++++----- NEWS.md | 6 ++ R/checkers.R | 18 ++---- R/gp.R | 12 +--- R/greta_kernel_class.R | 34 ++++-------- R/internals.R | 1 R/kernel_constructors.R | 4 - R/tf_kernels.R | 106 +++++++++++++++++++++++++++----------- README.md | 9 +-- build/vignette.rds |binary inst/WORDLIST |only inst/doc/getting-started.html | 6 +- man/figures/README-plotting-1.png |binary man/kernels.Rd | 4 - tests/spelling.R |only 16 files changed, 142 insertions(+), 104 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-10-21 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-10-31 0.5.1
2024-10-24 0.5.0
2023-12-19 0.4.1
2023-12-11 0.4.0