Title: Structural Equation Modeling and Twin Modeling in R
Description: Quickly create, run, and report structural equation models, and twin models.
See '?umx' for help, and umx_open_CRAN_page("umx") for NEWS.
Timothy C. Bates, Michael C. Neale, Hermine H. Maes, (2019). umx: A library for Structural Equation and Twin Modelling in R.
Twin Research and Human Genetics, 22, 27-41. <doi:10.1017/thg.2019.2>.
Author: Timothy C. Bates [aut, cre] ,
Nathan Gillespie [wit],
Hermine Maes [ctb],
Michael C. Neale [ctb],
Joshua N. Pritikin [ctb],
Luis De Araujo [ctb],
Brenton Wiernik [ctb],
Michael Zakharin [wit]
Maintainer: Timothy C. Bates <timothy.c.bates@gmail.com>
Diff between umx versions 4.20.0 dated 2024-04-10 and 4.21.0 dated 2024-11-14
DESCRIPTION | 26 - MD5 | 629 +++++++++++++------------- NAMESPACE | 3 NEWS.md | 21 R/build_run_modify.R | 107 ++-- R/deprecated.R | 4 R/fit_and_reporting.R | 173 +++---- R/misc_and_utility.R | 202 ++++---- R/tmx.R | 4 R/umxCLPM.R | 660 +++++++++++++++++++++------- R/umxDoC.R | 4 R/umxMRDoC.R | 2 R/umxMatrixFree.R | 2 R/umx_build_high_level_models.R | 38 - R/umx_build_polychoricMatrix3.R | 6 R/umx_build_umxACEv.R | 9 R/umx_build_umxGxEbiv.R | 4 R/umx_build_umxSexLim.R | 6 R/umx_build_umxSimplex.R | 6 R/umx_fit_stash_CIs.R | 4 R/umx_fit_umxFitIndices.R | 6 R/xmu.R | 46 - R/xmu_make_top_twin_models.R | 2 build/partial.rdb |binary inst/WORDLIST | 1 man/FishersMethod.Rd | 4 man/RMSEA.MxModel.Rd | 10 man/RMSEA.Rd | 6 man/RMSEA.summary.mxmodel.Rd | 10 man/SE_from_p.Rd | 4 man/dl_from_dropbox.Rd | 4 man/extractAIC.MxModel.Rd | 15 man/figures/CP.pdf |binary man/figures/CP.svg | 267 ++++------- man/figures/umx_help_figures.graffle |binary man/fin_interest.Rd | 12 man/geometric_mean.Rd | 14 man/ggAddR.Rd | 12 man/harmonic_mean.Rd | 8 man/install.OpenMx.Rd | 4 man/libs.Rd | 4 man/loadings.MxModel.Rd | 6 man/loadings.Rd | 6 man/noNAs.Rd | 4 man/oddsratio.Rd | 4 man/plot.MxLISRELModel.Rd | 16 man/plot.MxModel.Rd | 17 man/plot.MxModelTwinMaker.Rd | 10 man/power.ACE.test.Rd | 14 man/prolific_anonymize.Rd | 4 man/prolific_check_ID.Rd | 4 man/prolific_read_demog.Rd | 4 man/qm.Rd | 4 man/reliability.Rd | 4 man/residuals.MxModel.Rd | 10 man/tmx_is.identified.Rd | 4 man/tmx_show.MxMatrix.Rd | 6 man/tmx_show.Rd | 6 man/umx-deprecated.Rd | 4 man/umx.Rd | 24 - man/umxACE.Rd | 16 man/umxACEcov.Rd | 16 man/umxACEv.Rd | 18 man/umxAPA.Rd | 6 man/umxAlgebra.Rd | 4 man/umxBrownie.Rd | 9 man/umxCI.Rd | 10 man/umxCI_boot.Rd | 14 man/umxCLPM.Rd | 65 +- man/umxCP.Rd | 16 man/umxCompare.Rd | 12 man/umxConfint.Rd | 14 man/umxCov2cor.Rd | 4 man/umxDiagnose.Rd | 12 man/umxDiffMZ.Rd | 14 man/umxDiscTwin.Rd | 14 man/umxDoC.Rd | 14 man/umxDoCp.Rd | 12 man/umxEFA.Rd | 10 man/umxEquate.Rd | 8 man/umxExpCov.Rd | 18 man/umxExpMeans.Rd | 20 man/umxFactor.Rd | 20 man/umxFactorScores.Rd | 6 man/umxFitIndices.Rd | 14 man/umxFixAll.Rd | 6 man/umxGetLatents.Rd | 4 man/umxGetManifests.Rd | 4 man/umxGetModel.Rd | 4 man/umxGetParameters.Rd | 10 man/umxGxE.Rd | 14 man/umxGxE_window.Rd | 16 man/umxGxEbiv.Rd | 16 man/umxHetCor.Rd | 8 man/umxIP.Rd | 16 man/umxJiggle.Rd | 6 man/umxLav2RAM.Rd | 4 man/umxMI.Rd | 10 man/umxMRDoC.Rd | 16 man/umxMatrix.Rd | 8 man/umxMatrixFree.Rd | 2 man/umxModel.Rd | 5 man/umxModelNames.Rd | 8 man/umxModify.Rd | 12 man/umxParameters.Rd | 6 man/umxParan.Rd | 4 man/umxPath.Rd | 8 man/umxPlot.Rd | 10 man/umxPlotACE.Rd | 12 man/umxPlotACEcov.Rd | 14 man/umxPlotACEv.Rd | 12 man/umxPlotCP.Rd | 14 man/umxPlotDoC.Rd | 12 man/umxPlotFun.Rd | 12 man/umxPlotGxE.Rd | 10 man/umxPlotGxEbiv.Rd | 10 man/umxPlotIP.Rd | 12 man/umxPlotSexLim.Rd | 14 man/umxPlotSimplex.Rd | 12 man/umxRAM.Rd | 8 man/umxRAM2Lav.Rd | 4 man/umxReduce.Rd | 24 - man/umxReduceACE.Rd | 19 man/umxReduceGxE.Rd | 17 man/umxRenameMatrix.Rd | 3 man/umxRotate.MxModelCP.Rd | 16 man/umxRotate.Rd | 8 man/umxRun.Rd | 10 man/umxSetParameters.Rd | 16 man/umxSexLim.Rd | 16 man/umxSimplex.Rd | 16 man/umxSummarizeTwinData.Rd | 14 man/umxSummary.MxModel.Rd | 4 man/umxSummary.Rd | 6 man/umxSummaryACE.Rd | 16 man/umxSummaryACEcov.Rd | 2 man/umxSummaryACEv.Rd | 16 man/umxSummaryCP.Rd | 2 man/umxSummaryDoC.Rd | 16 man/umxSummaryGxE.Rd | 2 man/umxSummaryGxEbiv.Rd | 16 man/umxSummaryIP.Rd | 2 man/umxSummarySexLim.Rd | 16 man/umxSummarySimplex.Rd | 18 man/umxSuperModel.Rd | 10 man/umxThresholdMatrix.Rd | 2 man/umxTwinMaker.Rd | 14 man/umxTwoStage.Rd | 21 man/umxUnexplainedCausalNexus.Rd | 4 man/umxVersion.Rd | 6 man/umxWeightedAIC.Rd | 4 man/umx_APA_pval.Rd | 3 man/umx_aggregate.Rd | 4 man/umx_apply.Rd | 4 man/umx_array_shift.Rd | 4 man/umx_as_numeric.Rd | 4 man/umx_check_OS.Rd | 2 man/umx_check_model.Rd | 2 man/umx_check_names.Rd | 6 man/umx_check_parallel.Rd | 9 man/umx_cont_2_quantiles.Rd | 8 man/umx_cor.Rd | 4 man/umx_explode.Rd | 4 man/umx_explode_twin_names.Rd | 4 man/umx_file_load_pseudo.Rd | 4 man/umx_find_object.Rd | 4 man/umx_fun_mean_sd.Rd | 3 man/umx_get_bracket_addresses.Rd | 3 man/umx_get_checkpoint.Rd | 4 man/umx_get_options.Rd | 4 man/umx_grep.Rd | 6 man/umx_has_CIs.Rd | 6 man/umx_has_been_run.Rd | 4 man/umx_has_means.Rd | 6 man/umx_has_square_brackets.Rd | 2 man/umx_is_MxData.Rd | 2 man/umx_is_MxMatrix.Rd | 4 man/umx_is_MxModel.Rd | 4 man/umx_is_RAM.Rd | 4 man/umx_is_class.Rd | 4 man/umx_is_cov.Rd | 2 man/umx_is_endogenous.Rd | 6 man/umx_is_exogenous.Rd | 6 man/umx_is_numeric.Rd | 4 man/umx_is_ordered.Rd | 6 man/umx_long2wide.Rd | 4 man/umx_lower.tri.Rd | 4 man/umx_lower2full.Rd | 10 man/umx_make.Rd | 3 man/umx_make_MR_data.Rd | 4 man/umx_make_TwinData.Rd | 8 man/umx_make_fake_data.Rd | 4 man/umx_make_raw_from_cov.Rd | 4 man/umx_make_sql_from_excel.Rd | 4 man/umx_make_twin_data_nice.Rd | 4 man/umx_means.Rd | 4 man/umx_merge_randomized_columns.Rd | 4 man/umx_move_file.Rd | 4 man/umx_msg.Rd | 4 man/umx_names.Rd | 6 man/umx_open.Rd | 4 man/umx_open_CRAN_page.Rd | 4 man/umx_pad.Rd | 4 man/umx_paste_names.Rd | 6 man/umx_polychoric.Rd | 6 man/umx_polypairwise.Rd | 8 man/umx_polytriowise.Rd | 4 man/umx_print.Rd | 4 man/umx_r_test.Rd | 4 man/umx_read_lower.Rd | 4 man/umx_rename.Rd | 4 man/umx_rename_file.Rd | 4 man/umx_reorder.Rd | 4 man/umx_residualize.Rd | 14 man/umx_rot.Rd | 8 man/umx_round.Rd | 6 man/umx_scale.Rd | 10 man/umx_scale_wide_twin_data.Rd | 4 man/umx_score_scale.Rd | 6 man/umx_select_valid.Rd | 4 man/umx_set_auto_plot.Rd | 4 man/umx_set_auto_run.Rd | 4 man/umx_set_checkpoint.Rd | 4 man/umx_set_condensed_slots.Rd | 4 man/umx_set_cores.Rd | 4 man/umx_set_data_variance_check.Rd | 4 man/umx_set_dollar_symbol.Rd | 4 man/umx_set_optimization_options.Rd | 4 man/umx_set_optimizer.Rd | 4 man/umx_set_plot_file_suffix.Rd | 4 man/umx_set_plot_format.Rd | 6 man/umx_set_plot_use_hrbrthemes.Rd | 4 man/umx_set_separator.Rd | 4 man/umx_set_silent.Rd | 4 man/umx_set_table_format.Rd | 4 man/umx_stack.Rd | 4 man/umx_standardize.Rd | 5 man/umx_str_chars.Rd | 6 man/umx_str_from_object.Rd | 6 man/umx_string_to_algebra.Rd | 5 man/umx_strings2numeric.Rd | 4 man/umx_time.Rd | 6 man/umx_trim.Rd | 6 man/umx_var.Rd | 6 man/umx_wide2long.Rd | 4 man/umx_write_to_clipboard.Rd | 4 man/xmuHasSquareBrackets.Rd | 3 man/xmuLabel.Rd | 10 man/xmuLabel_MATRIX_Model.Rd | 7 man/xmuLabel_Matrix.Rd | 7 man/xmuLabel_RAM_Model.Rd | 7 man/xmuMI.Rd | 5 man/xmuMakeDeviationThresholdsMatrices.Rd | 3 man/xmuMakeOneHeadedPathsFromPathList.Rd | 3 man/xmuMakeTwoHeadedPathsFromPathList.Rd | 3 man/xmuMaxLevels.Rd | 3 man/xmuMinLevels.Rd | 3 man/xmuPropagateLabels.Rd | 5 man/xmuRAM2Ordinal.Rd | 5 man/xmuTwinSuper_Continuous.Rd | 3 man/xmuTwinSuper_NoBinary.Rd | 3 man/xmuTwinUpgradeMeansToCovariateModel.Rd | 3 man/xmuValues.Rd | 8 man/xmu_CI_merge.Rd | 5 man/xmu_CI_stash.Rd | 7 man/xmu_DF_to_mxData_TypeCov.Rd | 7 man/xmu_PadAndPruneForDefVars.Rd | 3 man/xmu_bracket_address2rclabel.Rd | 3 man/xmu_cell_is_on.Rd | 5 man/xmu_check_levels_identical.Rd | 3 man/xmu_check_needs_means.Rd | 5 man/xmu_check_variance.Rd | 3 man/xmu_clean_label.Rd | 3 man/xmu_data_missing.Rd | 3 man/xmu_data_swap_a_block.Rd | 3 man/xmu_describe_data_WLS.Rd | 9 man/xmu_dot_make_paths.Rd | 3 man/xmu_dot_make_residuals.Rd | 3 man/xmu_dot_maker.Rd | 5 man/xmu_dot_move_ranks.Rd | 3 man/xmu_dot_rank_str.Rd | 3 man/xmu_equate_threshold_values.Rd |only man/xmu_extract_column.Rd | 5 man/xmu_get_CI.Rd | 5 man/xmu_lavaan_process_group.Rd | 3 man/xmu_make_TwinSuperModel.Rd | 5 man/xmu_make_bin_cont_pair_data.Rd | 3 man/xmu_make_mxData.Rd | 7 man/xmu_match.arg.Rd | 3 man/xmu_name_from_lavaan_str.Rd | 3 man/xmu_path2twin.Rd | 3 man/xmu_path_regex.Rd | 3 man/xmu_print_algebras.Rd | 3 man/xmu_rclabel_2_bracket_address.Rd | 3 man/xmu_relevel_factors.Rd |only man/xmu_safe_run_summary.Rd | 7 man/xmu_scale_wide_data.Rd |only man/xmu_set_sep_from_suffix.Rd | 3 man/xmu_show_fit_or_comparison.Rd | 5 man/xmu_simplex_corner.Rd | 3 man/xmu_standardize_ACE.Rd | 1 man/xmu_standardize_ACEcov.Rd | 3 man/xmu_standardize_ACEv.Rd | 3 man/xmu_standardize_CP.Rd | 3 man/xmu_standardize_IP.Rd | 3 man/xmu_standardize_RAM.Rd | 5 man/xmu_standardize_SexLim.Rd | 3 man/xmu_standardize_Simplex.Rd | 3 man/xmu_start_value_list.Rd | 3 man/xmu_starts.Rd | 3 man/xmu_summary_RAM_group_parameters.Rd | 3 man/xmu_twin_add_WeightMatrices.Rd | 3 man/xmu_twin_check.Rd | 3 man/xmu_twin_get_var_names.Rd | 3 man/xmu_twin_make_def_means_mats_and_alg.Rd | 3 man/xmu_twin_upgrade_selDvs2SelVars.Rd | 3 tests/testthat/test_umx_CLPM.r | 70 ++ 317 files changed, 2409 insertions(+), 1912 deletions(-)
Title: Recording Tree-Ring Shapes of Tree Disks with Manual Digitizing
and Interpolating Model
Description: Record all tree-ring Shapefile of tree disk with GIS soft 'Qgis' and interpolating model from high resolution tree disk image.
Author: Megumi ISHIDA [aut, cre, cph]
Maintainer: Megumi ISHIDA <ishidam@sanchikanri.com>
Diff between TreeRingShape versions 3.0.3 dated 2024-04-22 and 3.0.5 dated 2024-11-14
DESCRIPTION | 21 ++++++++------- MD5 | 25 +++++++++--------- NEWS.md | 16 +++++++++--- R/ShapeFile.R | 9 ++++++ R/TreeRingsInterpolation.R | 58 ++++++++++++++++++++++++++++++++++++++++++-- R/calculation.R | 2 - README.md | 28 ++------------------- build/vignette.rds |binary inst/doc/TreeRingShape.Rmd | 2 - inst/doc/TreeRingShape.html | 6 ++-- man/DiskInfo.Rd |only man/TreeRingShape.Rd | 5 ++- tests/testthat.R | 3 -- vignettes/TreeRingShape.Rmd | 2 - 14 files changed, 114 insertions(+), 63 deletions(-)
Title: Interface to 'Python'
Description: Interface to 'Python' modules, classes, and functions. When calling
into 'Python', R data types are automatically converted to their equivalent 'Python'
types. When values are returned from 'Python' to R they are converted back to R
types. Compatible with all versions of 'Python' >= 2.7.
Author: Tomasz Kalinowski [ctb, cre],
Kevin Ushey [aut],
JJ Allaire [aut],
RStudio [cph, fnd],
Yuan Tang [aut, cph] ,
Dirk Eddelbuettel [ctb, cph],
Bryan Lewis [ctb, cph],
Sigrid Keydana [ctb],
Ryan Hafen [ctb, cph],
Marcus Geelnard [ctb, cph]
Maintainer: Tomasz Kalinowski <tomasz@posit.co>
Diff between reticulate versions 1.39.0 dated 2024-09-05 and 1.40.0 dated 2024-11-14
reticulate-1.39.0/reticulate/tests/testthat/resources/figure |only reticulate-1.39.0/reticulate/tests/testthat/resources/test-custom-root-dir.md |only reticulate-1.40.0/reticulate/DESCRIPTION | 6 reticulate-1.40.0/reticulate/MD5 | 79 +- reticulate-1.40.0/reticulate/NEWS.md | 39 + reticulate-1.40.0/reticulate/R/RcppExports.R | 8 reticulate-1.40.0/reticulate/R/ark-variables-methods.R |only reticulate-1.40.0/reticulate/R/array.R | 7 reticulate-1.40.0/reticulate/R/conda.R | 44 + reticulate-1.40.0/reticulate/R/config.R | 41 + reticulate-1.40.0/reticulate/R/miniconda.R | 5 reticulate-1.40.0/reticulate/R/package.R | 7 reticulate-1.40.0/reticulate/R/python-tools.R | 52 - reticulate-1.40.0/reticulate/R/python.R | 7 reticulate-1.40.0/reticulate/R/thread.R | 32 reticulate-1.40.0/reticulate/R/virtualenv.R | 13 reticulate-1.40.0/reticulate/R/zzz.R | 97 ++ reticulate-1.40.0/reticulate/build/vignette.rds |binary reticulate-1.40.0/reticulate/inst/doc/arrays.html | 2 reticulate-1.40.0/reticulate/inst/doc/calling_python.html | 2 reticulate-1.40.0/reticulate/inst/doc/package.html | 2 reticulate-1.40.0/reticulate/inst/doc/python_dependencies.html | 2 reticulate-1.40.0/reticulate/inst/doc/python_packages.Rmd | 2 reticulate-1.40.0/reticulate/inst/doc/python_packages.html | 4 reticulate-1.40.0/reticulate/inst/doc/python_primer.html | 2 reticulate-1.40.0/reticulate/inst/doc/r_markdown.html | 12 reticulate-1.40.0/reticulate/inst/doc/versions.html | 2 reticulate-1.40.0/reticulate/inst/python/rpytools/ark_variables.py |only reticulate-1.40.0/reticulate/inst/python/rpytools/run.py | 22 reticulate-1.40.0/reticulate/src/RcppExports.cpp | 23 reticulate-1.40.0/reticulate/src/libpython.cpp | 36 - reticulate-1.40.0/reticulate/src/libpython.h | 12 reticulate-1.40.0/reticulate/src/python.cpp | 330 +++++++--- reticulate-1.40.0/reticulate/src/readline.cpp | 27 reticulate-1.40.0/reticulate/src/reticulate_types.h | 6 reticulate-1.40.0/reticulate/tests/testthat/resources/test-chunking.md | 2 reticulate-1.40.0/reticulate/tests/testthat/test-delay-load.R | 26 reticulate-1.40.0/reticulate/tests/testthat/test-python-class.R | 87 +- reticulate-1.40.0/reticulate/tests/testthat/test-python-numpy.R | 12 reticulate-1.40.0/reticulate/tests/testthat/test-python-objects.R | 37 + reticulate-1.40.0/reticulate/tests/testthat/test-python-threads.R | 21 reticulate-1.40.0/reticulate/vignettes/python_packages.Rmd | 2 42 files changed, 781 insertions(+), 329 deletions(-)
Title: Retrieve, Harmonise and Map Open Data Regarding the Italian
School System
Description: Compiles and displays the available data sets regarding the Italian school system, with a focus on the infrastructural aspects.
Input datasets are downloaded from the web, with the aim of updating everything to real time.
The functions are divided in four main modules, namely
'Get', to scrape raw data from the web
'Util', various utilities needed to process raw data
'Group', to aggregate data at the municipality or province level
'Map', to visualize the output datasets.
Author: Leonardo Cefalo [aut, cre] ,
Alessio Pollice [ctb, ths] ,
Paolo Maranzano [ctb]
Maintainer: Leonardo Cefalo <leonardo.cefalo@uniba.it>
Diff between SchoolDataIT versions 0.2.1 dated 2024-10-01 and 0.2.2 dated 2024-11-14
DESCRIPTION | 8 ++-- MD5 | 52 +++++++++++++-------------- NEWS.md | 11 +++++ R/Get_BroadBand.R | 11 ++++- R/Get_DB_MIUR.R | 9 ++++ R/Get_InnerAreas.R | 19 +++++++++- R/Get_Invalsi_IS.R | 33 ++++++++--------- R/Get_Registry.R | 15 ++++++-- R/Get_School2mun.R | 31 +++++++++++++--- R/Get_Shapefile.R | 2 - R/Get_nstud.R | 10 ++++- R/Get_nteachers_prov.R | 12 ++++-- R/Group_DB_MIUR.R | 2 - R/Map_DB.R | 28 ++++++++------- R/Map_Invalsi.R | 28 ++++++++++----- R/Map_School_Buildings.R | 33 +++++++++-------- R/Set_DB.R | 82 ++++++++++++++++++++++++++++++++------------ R/Util_DB_MIUR_num.R | 2 - README.md | 2 - man/Get_BroadBand.Rd | 2 - man/Get_Invalsi_IS.Rd | 4 +- man/Get_Shapefile.Rd | 2 - man/Map_DB.Rd | 7 ++- man/Map_Invalsi.Rd | 7 ++- man/Map_School_Buildings.Rd | 7 ++- man/Set_DB.Rd | 2 - man/Util_DB_MIUR_num.Rd | 2 - 27 files changed, 280 insertions(+), 143 deletions(-)
Title: 'Arrow' Database Connectivity ('ADBC') Driver Manager
Description: Provides a developer-facing interface to 'Arrow' Database
Connectivity ('ADBC') for the purposes of driver development, driver
testing, and building high-level database interfaces for users. 'ADBC'
<https://arrow.apache.org/adbc/> is an API standard for database access
libraries that uses 'Arrow' for result sets and query parameters.
Author: Dewey Dunnington [aut, cre] ,
Apache Arrow [aut, cph],
Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between adbcdrivermanager versions 0.14.0 dated 2024-09-06 and 0.15.0 dated 2024-11-14
adbcdrivermanager-0.14.0/adbcdrivermanager/src/c/driver/framework/catalog.cc |only adbcdrivermanager-0.14.0/adbcdrivermanager/src/c/driver/framework/catalog.h |only adbcdrivermanager-0.14.0/adbcdrivermanager/src/c/vendor/sqlite3 |only adbcdrivermanager-0.15.0/adbcdrivermanager/DESCRIPTION | 10 adbcdrivermanager-0.15.0/adbcdrivermanager/MD5 | 90 adbcdrivermanager-0.15.0/adbcdrivermanager/configure | 3 adbcdrivermanager-0.15.0/adbcdrivermanager/man/adbcdrivermanager-package.Rd | 2 adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/driver/common/utils.c | 66 adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/driver/common/utils.h | 6 adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/driver/framework/base_driver.h | 11 adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/driver/framework/connection.h | 6 adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/driver/framework/objects.cc | 175 + adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/driver/framework/objects.h | 120 + adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/driver/framework/statement.h | 3 adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/driver/framework/status.h | 38 adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/driver/framework/utility.cc |only adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/driver/framework/utility.h |only adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/driver/postgresql/bind_stream.h | 552 +---- adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/driver/postgresql/connection.cc | 1086 ++++------ adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/driver/postgresql/connection.h | 8 adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/driver/postgresql/copy/reader.h | 5 adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/driver/postgresql/copy/writer.h | 10 adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/driver/postgresql/database.cc | 269 +- adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/driver/postgresql/database.h | 23 adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/driver/postgresql/error.cc | 73 adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/driver/postgresql/error.h | 73 adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/driver/postgresql/postgres_type.h | 96 adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/driver/postgresql/postgresql.cc | 32 adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/driver/postgresql/result_helper.cc | 89 adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/driver/postgresql/result_helper.h | 86 adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/driver/postgresql/result_reader.cc | 108 adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/driver/postgresql/result_reader.h | 29 adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/driver/postgresql/statement.cc | 296 +- adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/driver/postgresql/statement.h | 24 adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/driver/sqlite/sqlite.cc | 62 adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/driver/sqlite/statement_reader.c | 19 adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/driver/sqlite/statement_reader.h | 5 adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/driver_manager/adbc_driver_manager.cc | 63 adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/include/arrow-adbc/adbc.h | 2 adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/include/arrow-adbc/adbc_driver_manager.h | 5 adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/validation/adbc_validation.h | 54 adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/validation/adbc_validation_connection.cc | 35 adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/validation/adbc_validation_statement.cc | 147 + adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/validation/adbc_validation_util.cc | 60 adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/validation/adbc_validation_util.h | 127 - adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/vendor/nanoarrow/nanoarrow.c | 701 +++++- adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/vendor/nanoarrow/nanoarrow.h | 602 ++++- adbcdrivermanager-0.15.0/adbcdrivermanager/src/c/vendor/nanoarrow/nanoarrow.hpp | 13 48 files changed, 3285 insertions(+), 1999 deletions(-)
More information about adbcdrivermanager at CRAN
Permanent link
Title: 'Arrow' Database Connectivity ('ADBC') 'SQLite' Driver
Description: Provides a developer-facing interface to the 'Arrow' Database
Connectivity ('ADBC') 'SQLite' driver for the purposes of building high-level
database interfaces for users. 'ADBC' <https://arrow.apache.org/adbc/> is
an API standard for database access libraries that uses 'Arrow' for result
sets and query parameters.
Author: Dewey Dunnington [aut, cre] ,
Apache Arrow [aut, cph],
Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between adbcsqlite versions 0.14.0 dated 2024-09-06 and 0.15.0 dated 2024-11-14
adbcsqlite-0.14.0/adbcsqlite/src/c/driver/framework/catalog.cc |only adbcsqlite-0.14.0/adbcsqlite/src/c/driver/framework/catalog.h |only adbcsqlite-0.15.0/adbcsqlite/DESCRIPTION | 12 adbcsqlite-0.15.0/adbcsqlite/MD5 | 90 adbcsqlite-0.15.0/adbcsqlite/configure | 3 adbcsqlite-0.15.0/adbcsqlite/man/adbcsqlite-package.Rd | 3 adbcsqlite-0.15.0/adbcsqlite/src/Makevars.in | 4 adbcsqlite-0.15.0/adbcsqlite/src/c/driver/common/utils.c | 66 adbcsqlite-0.15.0/adbcsqlite/src/c/driver/common/utils.h | 6 adbcsqlite-0.15.0/adbcsqlite/src/c/driver/framework/base_driver.h | 11 adbcsqlite-0.15.0/adbcsqlite/src/c/driver/framework/connection.h | 6 adbcsqlite-0.15.0/adbcsqlite/src/c/driver/framework/objects.cc | 175 + adbcsqlite-0.15.0/adbcsqlite/src/c/driver/framework/objects.h | 120 + adbcsqlite-0.15.0/adbcsqlite/src/c/driver/framework/statement.h | 3 adbcsqlite-0.15.0/adbcsqlite/src/c/driver/framework/status.h | 38 adbcsqlite-0.15.0/adbcsqlite/src/c/driver/framework/utility.cc |only adbcsqlite-0.15.0/adbcsqlite/src/c/driver/framework/utility.h |only adbcsqlite-0.15.0/adbcsqlite/src/c/driver/postgresql/bind_stream.h | 552 +---- adbcsqlite-0.15.0/adbcsqlite/src/c/driver/postgresql/connection.cc | 1086 ++++------ adbcsqlite-0.15.0/adbcsqlite/src/c/driver/postgresql/connection.h | 8 adbcsqlite-0.15.0/adbcsqlite/src/c/driver/postgresql/copy/reader.h | 5 adbcsqlite-0.15.0/adbcsqlite/src/c/driver/postgresql/copy/writer.h | 10 adbcsqlite-0.15.0/adbcsqlite/src/c/driver/postgresql/database.cc | 269 +- adbcsqlite-0.15.0/adbcsqlite/src/c/driver/postgresql/database.h | 23 adbcsqlite-0.15.0/adbcsqlite/src/c/driver/postgresql/error.cc | 73 adbcsqlite-0.15.0/adbcsqlite/src/c/driver/postgresql/error.h | 73 adbcsqlite-0.15.0/adbcsqlite/src/c/driver/postgresql/postgres_type.h | 96 adbcsqlite-0.15.0/adbcsqlite/src/c/driver/postgresql/postgresql.cc | 32 adbcsqlite-0.15.0/adbcsqlite/src/c/driver/postgresql/result_helper.cc | 89 adbcsqlite-0.15.0/adbcsqlite/src/c/driver/postgresql/result_helper.h | 86 adbcsqlite-0.15.0/adbcsqlite/src/c/driver/postgresql/result_reader.cc | 108 adbcsqlite-0.15.0/adbcsqlite/src/c/driver/postgresql/result_reader.h | 29 adbcsqlite-0.15.0/adbcsqlite/src/c/driver/postgresql/statement.cc | 296 +- adbcsqlite-0.15.0/adbcsqlite/src/c/driver/postgresql/statement.h | 24 adbcsqlite-0.15.0/adbcsqlite/src/c/driver/sqlite/sqlite.cc | 62 adbcsqlite-0.15.0/adbcsqlite/src/c/driver/sqlite/statement_reader.c | 19 adbcsqlite-0.15.0/adbcsqlite/src/c/driver/sqlite/statement_reader.h | 5 adbcsqlite-0.15.0/adbcsqlite/src/c/driver_manager/adbc_driver_manager.cc | 63 adbcsqlite-0.15.0/adbcsqlite/src/c/include/arrow-adbc/adbc.h | 2 adbcsqlite-0.15.0/adbcsqlite/src/c/include/arrow-adbc/adbc_driver_manager.h | 5 adbcsqlite-0.15.0/adbcsqlite/src/c/validation/adbc_validation.h | 54 adbcsqlite-0.15.0/adbcsqlite/src/c/validation/adbc_validation_connection.cc | 35 adbcsqlite-0.15.0/adbcsqlite/src/c/validation/adbc_validation_statement.cc | 147 + adbcsqlite-0.15.0/adbcsqlite/src/c/validation/adbc_validation_util.cc | 60 adbcsqlite-0.15.0/adbcsqlite/src/c/validation/adbc_validation_util.h | 127 - adbcsqlite-0.15.0/adbcsqlite/src/c/vendor/nanoarrow/nanoarrow.c | 701 +++++- adbcsqlite-0.15.0/adbcsqlite/src/c/vendor/nanoarrow/nanoarrow.h | 602 ++++- adbcsqlite-0.15.0/adbcsqlite/src/c/vendor/nanoarrow/nanoarrow.hpp | 13 48 files changed, 3289 insertions(+), 2002 deletions(-)
Title: 'Arrow' Database Connectivity ('ADBC') 'PostgreSQL' Driver
Description: Provides a developer-facing interface to the 'Arrow' Database
Connectivity ('ADBC') 'PostgreSQL' driver for the purposes of building high-level
database interfaces for users. 'ADBC' <https://arrow.apache.org/adbc/> is
an API standard for database access libraries that uses 'Arrow' for result
sets and query parameters.
Author: Dewey Dunnington [aut, cre] ,
Apache Arrow [aut, cph],
Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between adbcpostgresql versions 0.14.0 dated 2024-09-06 and 0.15.0 dated 2024-11-14
adbcpostgresql-0.14.0/adbcpostgresql/src/c/driver/framework/catalog.cc |only adbcpostgresql-0.14.0/adbcpostgresql/src/c/driver/framework/catalog.h |only adbcpostgresql-0.14.0/adbcpostgresql/src/c/vendor/sqlite3 |only adbcpostgresql-0.15.0/adbcpostgresql/DESCRIPTION | 12 adbcpostgresql-0.15.0/adbcpostgresql/MD5 | 96 adbcpostgresql-0.15.0/adbcpostgresql/configure | 5 adbcpostgresql-0.15.0/adbcpostgresql/man/adbcpostgresql-package.Rd | 3 adbcpostgresql-0.15.0/adbcpostgresql/src/Makevars.in | 5 adbcpostgresql-0.15.0/adbcpostgresql/src/Makevars.ucrt | 5 adbcpostgresql-0.15.0/adbcpostgresql/src/Makevars.win | 5 adbcpostgresql-0.15.0/adbcpostgresql/src/c/driver/common/utils.c | 66 adbcpostgresql-0.15.0/adbcpostgresql/src/c/driver/common/utils.h | 6 adbcpostgresql-0.15.0/adbcpostgresql/src/c/driver/framework/base_driver.h | 11 adbcpostgresql-0.15.0/adbcpostgresql/src/c/driver/framework/connection.h | 6 adbcpostgresql-0.15.0/adbcpostgresql/src/c/driver/framework/objects.cc | 175 + adbcpostgresql-0.15.0/adbcpostgresql/src/c/driver/framework/objects.h | 120 + adbcpostgresql-0.15.0/adbcpostgresql/src/c/driver/framework/statement.h | 3 adbcpostgresql-0.15.0/adbcpostgresql/src/c/driver/framework/status.h | 38 adbcpostgresql-0.15.0/adbcpostgresql/src/c/driver/framework/utility.cc |only adbcpostgresql-0.15.0/adbcpostgresql/src/c/driver/framework/utility.h |only adbcpostgresql-0.15.0/adbcpostgresql/src/c/driver/postgresql/bind_stream.h | 552 +---- adbcpostgresql-0.15.0/adbcpostgresql/src/c/driver/postgresql/connection.cc | 1086 ++++------ adbcpostgresql-0.15.0/adbcpostgresql/src/c/driver/postgresql/connection.h | 8 adbcpostgresql-0.15.0/adbcpostgresql/src/c/driver/postgresql/copy/reader.h | 5 adbcpostgresql-0.15.0/adbcpostgresql/src/c/driver/postgresql/copy/writer.h | 10 adbcpostgresql-0.15.0/adbcpostgresql/src/c/driver/postgresql/database.cc | 269 +- adbcpostgresql-0.15.0/adbcpostgresql/src/c/driver/postgresql/database.h | 23 adbcpostgresql-0.15.0/adbcpostgresql/src/c/driver/postgresql/error.cc | 73 adbcpostgresql-0.15.0/adbcpostgresql/src/c/driver/postgresql/error.h | 73 adbcpostgresql-0.15.0/adbcpostgresql/src/c/driver/postgresql/postgres_type.h | 96 adbcpostgresql-0.15.0/adbcpostgresql/src/c/driver/postgresql/postgresql.cc | 32 adbcpostgresql-0.15.0/adbcpostgresql/src/c/driver/postgresql/result_helper.cc | 89 adbcpostgresql-0.15.0/adbcpostgresql/src/c/driver/postgresql/result_helper.h | 86 adbcpostgresql-0.15.0/adbcpostgresql/src/c/driver/postgresql/result_reader.cc | 108 adbcpostgresql-0.15.0/adbcpostgresql/src/c/driver/postgresql/result_reader.h | 29 adbcpostgresql-0.15.0/adbcpostgresql/src/c/driver/postgresql/statement.cc | 296 +- adbcpostgresql-0.15.0/adbcpostgresql/src/c/driver/postgresql/statement.h | 24 adbcpostgresql-0.15.0/adbcpostgresql/src/c/driver/sqlite/sqlite.cc | 62 adbcpostgresql-0.15.0/adbcpostgresql/src/c/driver/sqlite/statement_reader.c | 19 adbcpostgresql-0.15.0/adbcpostgresql/src/c/driver/sqlite/statement_reader.h | 5 adbcpostgresql-0.15.0/adbcpostgresql/src/c/driver_manager/adbc_driver_manager.cc | 63 adbcpostgresql-0.15.0/adbcpostgresql/src/c/include/arrow-adbc/adbc.h | 2 adbcpostgresql-0.15.0/adbcpostgresql/src/c/include/arrow-adbc/adbc_driver_manager.h | 5 adbcpostgresql-0.15.0/adbcpostgresql/src/c/validation/adbc_validation.h | 54 adbcpostgresql-0.15.0/adbcpostgresql/src/c/validation/adbc_validation_connection.cc | 35 adbcpostgresql-0.15.0/adbcpostgresql/src/c/validation/adbc_validation_statement.cc | 147 + adbcpostgresql-0.15.0/adbcpostgresql/src/c/validation/adbc_validation_util.cc | 60 adbcpostgresql-0.15.0/adbcpostgresql/src/c/validation/adbc_validation_util.h | 127 - adbcpostgresql-0.15.0/adbcpostgresql/src/c/vendor/nanoarrow/nanoarrow.c | 701 +++++- adbcpostgresql-0.15.0/adbcpostgresql/src/c/vendor/nanoarrow/nanoarrow.h | 602 ++++- adbcpostgresql-0.15.0/adbcpostgresql/src/c/vendor/nanoarrow/nanoarrow.hpp | 13 51 files changed, 3299 insertions(+), 2011 deletions(-)
More information about adbcpostgresql at CRAN
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Title: Preprocessing Operators and Pipelines for 'mlr3'
Description: Dataflow programming toolkit that enriches 'mlr3' with a diverse
set of pipelining operators ('PipeOps') that can be composed into graphs.
Operations exist for data preprocessing, model fitting, and ensemble
learning. Graphs can themselves be treated as 'mlr3' 'Learners' and can
therefore be resampled, benchmarked, and tuned.
Author: Martin Binder [aut, cre],
Florian Pfisterer [aut] ,
Lennart Schneider [aut] ,
Bernd Bischl [aut] ,
Michel Lang [aut] ,
Sebastian Fischer [aut] ,
Susanne Dandl [aut],
Keno Mersmann [ctb],
Maximilian Muecke [ctb] ,
Lona Koers [ctb]
Maintainer: Martin Binder <mlr.developer@mb706.com>
Diff between mlr3pipelines versions 0.7.0 dated 2024-09-24 and 0.7.1 dated 2024-11-14
DESCRIPTION | 31 +- MD5 | 274 +++++++++++++------------- NAMESPACE | 8 NEWS.md | 16 + R/Graph.R | 5 R/GraphLearner.R | 89 ++++++-- R/PipeOpADAS.R | 4 R/PipeOpBLSmote.R | 4 R/PipeOpBoxCox.R | 5 R/PipeOpClassifAvg.R | 4 R/PipeOpEncodeLmer.R | 6 R/PipeOpFilter.R | 6 R/PipeOpICA.R | 4 R/PipeOpImputeLearner.R | 4 R/PipeOpKernelPCA.R | 4 R/PipeOpLearner.R | 4 R/PipeOpLearnerCV.R | 4 R/PipeOpLearnerPICVPlus.R |only R/PipeOpLearnerQuantiles.R |only R/PipeOpNMF.R | 8 R/PipeOpNearmiss.R |only R/PipeOpOVR.R | 8 R/PipeOpProxy.R | 4 R/PipeOpRandomResponse.R | 4 R/PipeOpRegrAvg.R | 4 R/PipeOpSmote.R | 4 R/PipeOpSmoteNC.R | 4 R/PipeOpTextVectorizer.R | 6 R/PipeOpThreshold.R | 4 R/PipeOpTomek.R |only R/PipeOpTrafo.R | 12 - R/PipeOpTuneThreshold.R | 8 R/PipeOpVtreat.R | 4 R/PipeOpYeoJohnson.R | 4 R/TaskRegr_boston_housing.R |only R/bibentries.R | 39 +++ R/mlr_graphs.R | 4 R/mlr_pipeops.R | 4 R/pipeline_bagging.R | 4 R/pipeline_ovr.R | 4 R/pipeline_robustify.R | 4 R/pipeline_stacking.R | 6 R/pipeline_targettrafo.R | 4 R/po.R | 4 R/ppl.R | 4 R/utils.R | 31 -- R/zzz.R | 1 man/Graph.Rd | 5 man/PipeOp.Rd | 4 man/PipeOpEnsemble.Rd | 4 man/PipeOpImpute.Rd | 4 man/PipeOpTargetTrafo.Rd | 4 man/PipeOpTaskPreproc.Rd | 4 man/PipeOpTaskPreprocSimple.Rd | 4 man/mlr3pipelines-package.Rd | 1 man/mlr_graphs.Rd | 4 man/mlr_graphs_bagging.Rd | 4 man/mlr_graphs_ovr.Rd | 4 man/mlr_graphs_robustify.Rd | 4 man/mlr_graphs_stacking.Rd | 6 man/mlr_graphs_targettrafo.Rd | 4 man/mlr_learners_graph.Rd | 40 ++- man/mlr_pipeops.Rd | 8 man/mlr_pipeops_adas.Rd | 8 man/mlr_pipeops_blsmote.Rd | 8 man/mlr_pipeops_boxcox.Rd | 8 man/mlr_pipeops_branch.Rd | 4 man/mlr_pipeops_chunk.Rd | 4 man/mlr_pipeops_classbalancing.Rd | 4 man/mlr_pipeops_classifavg.Rd | 8 man/mlr_pipeops_classweights.Rd | 4 man/mlr_pipeops_colapply.Rd | 4 man/mlr_pipeops_collapsefactors.Rd | 4 man/mlr_pipeops_colroles.Rd | 4 man/mlr_pipeops_copy.Rd | 4 man/mlr_pipeops_datefeatures.Rd | 4 man/mlr_pipeops_encode.Rd | 4 man/mlr_pipeops_encodeimpact.Rd | 4 man/mlr_pipeops_encodelmer.Rd | 10 man/mlr_pipeops_featureunion.Rd | 4 man/mlr_pipeops_filter.Rd | 10 man/mlr_pipeops_fixfactors.Rd | 4 man/mlr_pipeops_histbin.Rd | 4 man/mlr_pipeops_ica.Rd | 8 man/mlr_pipeops_imputeconstant.Rd | 4 man/mlr_pipeops_imputehist.Rd | 4 man/mlr_pipeops_imputelearner.Rd | 9 man/mlr_pipeops_imputemean.Rd | 4 man/mlr_pipeops_imputemedian.Rd | 4 man/mlr_pipeops_imputemode.Rd | 4 man/mlr_pipeops_imputeoor.Rd | 4 man/mlr_pipeops_imputesample.Rd | 4 man/mlr_pipeops_kernelpca.Rd | 8 man/mlr_pipeops_learner.Rd | 12 - man/mlr_pipeops_learner_cv.Rd | 8 man/mlr_pipeops_learner_pi_cvplus.Rd |only man/mlr_pipeops_learner_quantiles.Rd |only man/mlr_pipeops_missind.Rd | 4 man/mlr_pipeops_modelmatrix.Rd | 4 man/mlr_pipeops_multiplicityexply.Rd | 4 man/mlr_pipeops_multiplicityimply.Rd | 4 man/mlr_pipeops_mutate.Rd | 4 man/mlr_pipeops_nearmiss.Rd |only man/mlr_pipeops_nmf.Rd | 12 - man/mlr_pipeops_nop.Rd | 4 man/mlr_pipeops_ovrsplit.Rd | 8 man/mlr_pipeops_ovrunite.Rd | 8 man/mlr_pipeops_pca.Rd | 4 man/mlr_pipeops_proxy.Rd | 8 man/mlr_pipeops_quantilebin.Rd | 4 man/mlr_pipeops_randomprojection.Rd | 4 man/mlr_pipeops_randomresponse.Rd | 8 man/mlr_pipeops_regravg.Rd | 8 man/mlr_pipeops_removeconstants.Rd | 4 man/mlr_pipeops_renamecolumns.Rd | 4 man/mlr_pipeops_replicate.Rd | 4 man/mlr_pipeops_rowapply.Rd | 4 man/mlr_pipeops_scale.Rd | 4 man/mlr_pipeops_scalemaxabs.Rd | 4 man/mlr_pipeops_scalerange.Rd | 4 man/mlr_pipeops_select.Rd | 4 man/mlr_pipeops_smote.Rd | 8 man/mlr_pipeops_smotenc.Rd | 8 man/mlr_pipeops_spatialsign.Rd | 4 man/mlr_pipeops_subsample.Rd | 4 man/mlr_pipeops_targetinvert.Rd | 4 man/mlr_pipeops_targetmutate.Rd | 8 man/mlr_pipeops_targettrafoscalerange.Rd | 8 man/mlr_pipeops_textvectorizer.Rd | 10 man/mlr_pipeops_threshold.Rd | 8 man/mlr_pipeops_tomek.Rd |only man/mlr_pipeops_tunethreshold.Rd | 12 - man/mlr_pipeops_unbranch.Rd | 4 man/mlr_pipeops_updatetarget.Rd | 8 man/mlr_pipeops_vtreat.Rd | 8 man/mlr_pipeops_yeojohnson.Rd | 8 man/mlr_tasks_boston_housing.Rd |only man/po.Rd | 4 man/ppl.Rd | 4 tests/testthat/test_GraphLearner.R | 36 ++- tests/testthat/test_dictionary.R | 6 tests/testthat/test_pipeop_learnerpicvplus.R |only tests/testthat/test_pipeop_learnerquantiles.R |only tests/testthat/test_pipeop_nearmiss.R |only tests/testthat/test_pipeop_tomek.R |only 145 files changed, 782 insertions(+), 430 deletions(-)
Title: Group Sequential Design
Description: Derives group sequential clinical trial designs and describes
their properties. Particular focus on time-to-event, binary, and
continuous outcomes. Largely based on methods described in
Jennison, Christopher and Turnbull, Bruce W., 2000,
"Group Sequential Methods with Applications to Clinical Trials"
ISBN: 0-8493-0316-8.
Author: Keaven Anderson [aut, cre],
Merck & Co., Inc., Rahway, NJ, USA and its affiliates [cph]
Maintainer: Keaven Anderson <keaven_anderson@merck.com>
Diff between gsDesign versions 3.6.4 dated 2024-07-26 and 3.6.5 dated 2024-11-14
DESCRIPTION | 16 MD5 | 48 - NEWS.md | 21 R/toInteger.R | 83 +- build/vignette.rds |binary inst/doc/ConditionalErrorSpending.html | 825 ++++++++++++------------ inst/doc/ConditionalPowerPlot.html | 183 ++--- inst/doc/GentleIntroductionToGSD.html | 162 ++-- inst/doc/PoissonMixtureModel.html | 287 ++++---- inst/doc/SpendingFunctionOverview.html | 3 inst/doc/SurvivalOverview.R | 2 inst/doc/SurvivalOverview.html | 328 ++++----- inst/doc/VaccineEfficacy.html | 717 ++++++++++---------- inst/doc/binomialSPRTExample.html | 321 ++++----- inst/doc/gsDesignPackageOverview.html | 51 - inst/doc/gsSurvBasicExamples.R | 26 inst/doc/gsSurvBasicExamples.html | 857 ++++++++++++------------- inst/doc/nNormal.html | 109 +-- inst/doc/toInteger.R | 73 -- inst/doc/toInteger.Rmd | 108 +-- inst/doc/toInteger.html | 259 +++---- man/gsDesign-package.Rd | 5 man/toInteger.Rd | 54 + tests/testthat/test-developer-test-toInteger.R |only tests/testthat/test-independent-test-as_rtf.R |only vignettes/toInteger.Rmd | 108 +-- 26 files changed, 2305 insertions(+), 2341 deletions(-)
Title: Read, Write and Edit 'xlsx' Files
Description: Simplifies the creation of 'xlsx' files by
providing a high level interface to writing, styling and editing
worksheets.
Author: Jordan Mark Barbone [aut] ,
Jan Marvin Garbuszus [aut, cre],
Olivier Roy [ctb],
openxlsx authors [cph] ,
Arseny Kapoulkine [ctb, cph]
Maintainer: Jan Marvin Garbuszus <jan.garbuszus@ruhr-uni-bochum.de>
Diff between openxlsx2 versions 1.10 dated 2024-10-17 and 1.11 dated 2024-11-14
DESCRIPTION | 6 MD5 | 56 ++++----- NEWS.md | 14 ++ R/RcppExports.R | 12 - R/class-workbook-wrappers.R | 55 ++++++++ R/class-workbook.R | 42 ++++-- R/converters.R | 2 R/helper-functions.R | 10 + R/read.R | 2 R/utils.R | 1 R/wb_functions.R | 4 R/wb_styles.R | 7 - R/write.R | 15 +- build/vignette.rds |binary inst/WORDLIST | 1 inst/doc/Update-from-openxlsx.R | 50 ++++---- inst/doc/conditional-formatting.R | 32 ++--- inst/doc/openxlsx2.R | 32 ++--- man/wb_add_numfmt.Rd | 72 +++++++++++ man/wb_add_slicer.Rd | 1 src/RcppExports.cpp | 40 ++---- src/helper_functions.cpp | 217 +++++++---------------------------- src/load_workbook.cpp | 10 - src/openxlsx2.h | 116 ++++++++++++++++++ src/pugi.cpp | 6 src/strings_xml.cpp | 8 - tests/testthat/test-class-workbook.R | 20 +++ tests/testthat/test-pugi_cpp.R | 2 tests/testthat/test-write.R | 55 +++++++- 29 files changed, 546 insertions(+), 342 deletions(-)
Title: Define and Enforce Contracts for Dataframes as Function
Parameters
Description: A dataframe validation framework for package builders who use
dataframes as function parameters. It performs checks on column names, coerces
data-types, and checks grouping to make sure user inputs conform to a
specification provided by the package author. It provides a mechanism for
package authors to automatically document supported dataframe inputs and
selectively dispatch to functions depending on the format of a dataframe much
like S3 does for classes. It also contains some developer tools to make
working with and documenting dataframe specifications easier. It helps package
developers to improve their documentation and simplifies parameter validation
where dataframes are used as function parameters.
Author: Robert Challen [aut, cre, cph]
Maintainer: Robert Challen <rob.challen@bristol.ac.uk>
Diff between interfacer versions 0.2.3 dated 2024-08-01 and 0.3.2 dated 2024-11-14
DESCRIPTION | 8 +-- MD5 | 76 +++++++++++++++++++----------- NAMESPACE | 10 ++++ NEWS.md | 24 +++++++++ R/devtools.R | 9 +-- R/idispatch.R | 12 ++-- R/iface-class.R | 20 ++++---- R/igroup-process.R | 12 ++++ R/imapper.R | 6 +- R/interfacer.R | 26 ++++++++-- R/params_check_consistent.R |only R/params_check_framework.R |only R/params_check_types.R |only R/params_recycle.R |only R/params_resolve_missing.R |only R/type-coerce.R | 96 +++++++++++++++++++++++++++++++-------- README.md | 12 ++++ build/vignette.rds |binary inst/WORDLIST | 3 - inst/doc/consistency.R |only inst/doc/consistency.Rmd |only inst/doc/consistency.html |only inst/doc/dispatch.Rmd | 2 inst/doc/dispatch.html | 2 inst/doc/interfacer.html | 21 ++++---- inst/doc/nesting.html | 2 man/check_character.Rd |only man/check_consistent.Rd |only man/check_date.Rd |only man/check_integer.Rd |only man/check_logical.Rd |only man/check_numeric.Rd |only man/check_single.Rd |only man/figures |only man/iconvert.Rd | 4 - man/idispatch.Rd | 13 ++--- man/iface.Rd | 8 +-- man/imapper.Rd | 6 +- man/recycle.Rd |only man/resolve_missing.Rd |only man/type.double.Rd | 5 +- man/type.group_unique.Rd | 4 - man/type.numeric.Rd | 5 +- man/type.unique_id.Rd |only tests/testthat/helper-data.R | 4 + tests/testthat/test-interfacer.R | 47 ++++++++++--------- tests/testthat/test-roxygen.R |only vignettes/consistency.Rmd |only vignettes/dispatch.Rmd | 2 49 files changed, 297 insertions(+), 142 deletions(-)
Title: Inference for Spatiotemporal Partially Observed Markov Processes
Description: Inference on panel data using spatiotemporal partially-observed Markov process (SpatPOMP) models. The 'spatPomp' package extends 'pomp' to include algorithms taking advantage of the spatial structure in order to assist with handling high dimensional processes. See Asfaw et al. (2024) <doi:10.48550/arXiv.2101.01157> for further description of the package.
Author: Kidus Asfaw [aut],
Edward Ionides [cre, aut],
Aaron A. King [aut],
Allister Ho [ctb],
Joonha Park [ctb],
Jesse Wheeler [ctb],
Jifan Li [ctb],
Ning Ning [ctb],
Haogao Gu [ctb]
Maintainer: Edward Ionides <ionides@umich.edu>
Diff between spatPomp versions 0.36.1 dated 2024-08-20 and 1.0.0 dated 2024-11-14
DESCRIPTION | 24 ++++----- MD5 | 104 ++++++++++++++++++++-------------------- R/abf.R | 4 - R/abfir.R | 2 R/bpfilter.R | 4 - R/conc.R | 2 R/enkf.R | 2 R/eunit_measure.R | 2 R/girf.R | 2 R/ibpf.R | 6 +- R/ienkf.R | 2 R/igirf.R | 4 - R/init.R |only R/iubf.R | 2 R/listie.R | 5 + R/loglik.R | 4 - R/lorenz.R | 2 R/munit_measure.R | 2 R/plot.R | 79 +++++++++++++++--------------- R/runit_measure.R | 2 R/spatPomp.R | 2 R/vec_dmeasure.R | 2 R/vec_rmeasure.R | 2 R/vunit_measure.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/ibpf.pdf |binary inst/doc/tutorial.pdf |binary man/abf.Rd | 12 +++- man/abfir.Rd | 2 man/bpfilter.Rd | 4 - man/conc.Rd | 2 man/enkf.Rd | 2 man/eunit_measure.Rd | 2 man/girf.Rd | 2 man/ibpf.Rd | 6 +- man/ienkf.Rd | 2 man/igirf.Rd | 4 - man/iubf.Rd | 2 man/listie.Rd | 5 + man/loglik.Rd | 4 - man/lorenz.Rd | 2 man/munit_measure.Rd | 2 man/plot.Rd | 39 ++++++--------- man/runit_measure.Rd | 2 man/spatPomp.Rd | 2 man/vec_dmeasure.Rd | 2 man/vec_rmeasure.Rd | 2 man/vunit_measure.Rd | 2 tests/bm.R | 3 - tests/bm.Rout.save | 3 - vignettes/README |only vignettes/ibpf-original.pdf |binary vignettes/tutorial-original.pdf |binary 54 files changed, 189 insertions(+), 181 deletions(-)
Title: Continuous and Dichotomized Index Predictors Based on
Distribution Quantiles
Description: Select optimal functional regression or dichotomized
quantile predictors for survival/logistic/numeric outcome
and perform optimistic bias correction for any optimally
dichotomized numeric predictor(s), as in Yi, et. al.
(2023) <doi:10.1016/j.labinv.2023.100158>.
Author: Tingting Zhan [aut, cre, cph] ,
Misung Yi [aut, cph] ,
Inna Chervoneva [aut, cph]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>
Diff between Qindex versions 0.1.6 dated 2024-10-07 and 0.1.7 dated 2024-11-14
Qindex-0.1.6/Qindex/R/lim_trans.R |only Qindex-0.1.6/Qindex/inst |only Qindex-0.1.7/Qindex/DESCRIPTION | 27 +++---- Qindex-0.1.7/Qindex/MD5 | 44 +++++------- Qindex-0.1.7/Qindex/NAMESPACE | 5 + Qindex-0.1.7/Qindex/R/BBC_dichotom.R | 30 +++++++- Qindex-0.1.7/Qindex/R/Qindex.R | 8 -- Qindex-0.1.7/Qindex/R/bootid.R | 13 +-- Qindex-0.1.7/Qindex/R/clusterQp.R | 99 ++++++++++++++++------------ Qindex-0.1.7/Qindex/R/defunct.R |only Qindex-0.1.7/Qindex/R/integrandSurface.R | 42 ++++++----- Qindex-0.1.7/Qindex/R/predict.Qindex.R | 2 Qindex-0.1.7/Qindex/R/std_.R | 6 - Qindex-0.1.7/Qindex/build/partial.rdb |binary Qindex-0.1.7/Qindex/man/BBC_cutoff.Rd |only Qindex-0.1.7/Qindex/man/BBC_dichotom.Rd | 4 - Qindex-0.1.7/Qindex/man/Qindex-package.Rd | 19 +++-- Qindex-0.1.7/Qindex/man/bootid.Rd | 11 +-- Qindex-0.1.7/Qindex/man/clusterQp.Rd | 38 ++++------ Qindex-0.1.7/Qindex/man/defunct.Rd |only Qindex-0.1.7/Qindex/man/integrandSurface.Rd | 26 +++---- Qindex-0.1.7/Qindex/man/predict.Qindex.Rd | 2 Qindex-0.1.7/Qindex/man/std_.Rd | 6 - 23 files changed, 212 insertions(+), 170 deletions(-)
Title: Flexible and General Mediation Analysis Using Riesz Representers
Description: Implements a modern, unified estimation strategy for common
mediation estimands (natural effects, organic effects, interventional effects,
and recanting twins) in combination with modified treatment policies as
described in Liu, Williams, Rudolph, and DÃaz (2024)
<doi:10.48550/arXiv.2408.14620>. Estimation makes use of recent advancements
in Riesz-learning to estimate a set of required nuisance parameters with
deep learning. The result is the capability to estimate mediation effects with
binary, categorical, continuous, or multivariate exposures with
high-dimensional mediators and mediator-outcome confounders using machine
learning.
Author: Nicholas Williams [aut, cre, cph]
,
Richard Liu [ctb],
Ivan Diaz [aut, cph]
Maintainer: Nicholas Williams <ntwilliams.personal@gmail.com>
Diff between crumble versions 0.1.0 dated 2024-09-18 and 0.1.1 dated 2024-11-14
DESCRIPTION | 9 ++-- MD5 | 32 +++++++------- NAMESPACE | 10 ++++ NEWS.md | 6 ++ R/assertions.R | 8 ++- R/calc_estimates.R | 62 +++++++++------------------- R/crumble.R | 67 ++++++++++++++---------------- R/crumble_data.R | 49 ++++++++++++---------- R/crumble_vars.R | 1 R/eif.R | 37 +++++++++-------- R/helpers.R | 16 ------- R/phi.R | 7 ++- R/print.R | 104 ++++++++++------------------------------------- R/tidy.R | 113 +--------------------------------------------------- README.md | 28 ++++++++---- inst/references.bib | 6 ++ man/crumble.Rd | 2 17 files changed, 200 insertions(+), 357 deletions(-)
Title: Excess Mortality
Description: Implementation of method for estimating excess mortality and other health related outcomes from weekly or daily count data described in Acosta and Irizarry (2021) "A Flexible Statistical Framework for Estimating Excess Mortality".
Author: Rafael A. Irizarry [aut, cre],
Rolando Acosta [aut],
Monica Robles-Fontan [aut],
Ferenci Tamas [ctb]
Maintainer: Rafael A. Irizarry <rafael_irizarry@dfci.harvard.edu>
Diff between excessmort versions 0.7.0 dated 2024-03-13 and 0.8.0 dated 2024-11-14
DESCRIPTION | 10 ++++---- MD5 | 16 ++++++------- R/puerto_rico_counts.R | 5 +++- build/vignette.rds |binary data/puerto_rico_counts.rda |binary data/puerto_rico_icd.rda |binary inst/doc/excessmort.html | 54 +++++++++++++++++++++----------------------- man/puerto_rico_counts.Rd | 7 ++++- man/puerto_rico_icd.Rd | 2 - 9 files changed, 50 insertions(+), 44 deletions(-)
Title: Versatile Curation of Table Metadata
Description: A YAML-based
mechanism for working with table metadata. Supports
compact syntax for creating, modifying, viewing, exporting,
importing, displaying, and plotting metadata coded as column
attributes. The 'yamlet' dialect is valid 'YAML' with
defaults and conventions chosen to improve readability.
See ?yamlet, ?decorate, ?modify, ?io_csv, and ?ggplot.decorated.
Author: Tim Bergsma [aut, cre]
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Diff between yamlet versions 1.1.4 dated 2024-10-21 and 1.1.5 dated 2024-11-14
DESCRIPTION | 6 +- MD5 | 26 +++++----- R/mimic.R | 6 +- inst/doc/scripted-html.html | 4 - inst/doc/scripted-pdf.pdf |binary inst/doc/yamlet-introduction.html | 4 - man/mimic.classified.Rd | 1 tests/testthat/086.rds |binary tests/testthat/090.rds |binary tests/testthat/091.rds |binary tests/testthat/094.rds |binary tests/testthat/096.rds |binary vignettes/scripted-pdf_files/figure-latex/unnamed-chunk-4-1.pdf |binary vignettes/scripted-pdf_files/figure-latex/unnamed-chunk-5-1.pdf |binary 14 files changed, 26 insertions(+), 21 deletions(-)
Title: Removal of Unwanted Technical Variation from UK Biobank NMR
Metabolomics Biomarker Data
Description: A suite of utilities for working with the UK Biobank
<https://www.ukbiobank.ac.uk/> Nuclear Magnetic Resonance spectroscopy (NMR)
metabolomics data <https://biobank.ndph.ox.ac.uk/showcase/label.cgi?id=220>.
Includes functions for extracting biomarkers from decoded UK Biobank field
data, removing unwanted technical variation from biomarker concentrations,
computing an extended set of lipid, fatty acid, and cholesterol fractions,
and for re-deriving composite biomarkers and ratios after adjusting data
for unwanted biological variation. For further details on methods see
Ritchie SC et al. Sci Data (2023) <doi:10.1038/s41597-023-01949-y>.
Author: Scott C Ritchie [aut, cre]
Maintainer: Scott C Ritchie <sritchie73@gmail.com>
Diff between ukbnmr versions 2.2 dated 2023-08-23 and 3.2.0 dated 2024-11-14
ukbnmr-2.2/ukbnmr/man/compute_nightingale_ratio_qc_flags.Rd |only ukbnmr-2.2/ukbnmr/man/compute_nightingale_ratios.Rd |only ukbnmr-3.2.0/ukbnmr/DESCRIPTION | 10 ukbnmr-3.2.0/ukbnmr/MD5 | 57 - ukbnmr-3.2.0/ukbnmr/NAMESPACE | 4 ukbnmr-3.2.0/ukbnmr/NEWS.md | 42 + ukbnmr-3.2.0/ukbnmr/R/biomarker_qc.R | 191 +++- ukbnmr-3.2.0/ukbnmr/R/compute_biomarkers_user.R | 63 - ukbnmr-3.2.0/ukbnmr/R/compute_qc_flags_user.R | 44 - ukbnmr-3.2.0/ukbnmr/R/data.R | 4 ukbnmr-3.2.0/ukbnmr/R/detect_format.R | 3 ukbnmr-3.2.0/ukbnmr/R/extractor_functions.R | 158 ++- ukbnmr-3.2.0/ukbnmr/R/process_data.R | 42 - ukbnmr-3.2.0/ukbnmr/R/ukbnmr.R | 50 - ukbnmr-3.2.0/ukbnmr/R/utils.R | 16 ukbnmr-3.2.0/ukbnmr/build/vignette.rds |binary ukbnmr-3.2.0/ukbnmr/data/test_data.rda |binary ukbnmr-3.2.0/ukbnmr/inst/doc/ukbnmr.R | 111 ++ ukbnmr-3.2.0/ukbnmr/inst/doc/ukbnmr.Rmd | 254 ++++-- ukbnmr-3.2.0/ukbnmr/inst/doc/ukbnmr.html | 483 ++++++++---- ukbnmr-3.2.0/ukbnmr/inst/extdata/test_data.csv | 2 ukbnmr-3.2.0/ukbnmr/man/extract_biomarker_qc_flags.Rd | 51 - ukbnmr-3.2.0/ukbnmr/man/extract_biomarkers.Rd | 48 - ukbnmr-3.2.0/ukbnmr/man/extract_sample_qc_flags.Rd | 55 - ukbnmr-3.2.0/ukbnmr/man/recompute_derived_biomarkers.Rd | 6 ukbnmr-3.2.0/ukbnmr/man/remove_technical_variation.Rd | 117 +- ukbnmr-3.2.0/ukbnmr/man/test_data.Rd | 4 ukbnmr-3.2.0/ukbnmr/man/ukbnmr.Rd | 52 - ukbnmr-3.2.0/ukbnmr/vignettes/img/gwas_improvement_v3.png |only ukbnmr-3.2.0/ukbnmr/vignettes/img/r2_explained_v3.png |only ukbnmr-3.2.0/ukbnmr/vignettes/img/repeatability_v3.png |only ukbnmr-3.2.0/ukbnmr/vignettes/ukbnmr.Rmd | 254 ++++-- 32 files changed, 1340 insertions(+), 781 deletions(-)
Title: Tabulate Descriptive Statistics in Multiple Formats
Description: Creates a table of descriptive statistics
for factor and numeric columns in a data frame. Displays
these by groups, if any. Highly customizable, with support
for 'html' and 'pdf' provided by 'kableExtra'. Respects
original column order, column labels, and factor level order.
See ?tablet.data.frame and vignettes.
Author: Tim Bergsma [aut, cre]
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Diff between tablet versions 0.6.11 dated 2024-10-25 and 0.6.12 dated 2024-11-14
DESCRIPTION | 6 - MD5 | 16 +- R/tablet.R | 188 +++++++++++++++++++++++++-------- inst/doc/tablet-introduction-html.html | 4 inst/doc/tablet-introduction-pdf.pdf |binary man/tablet.data.frame.Rd | 4 man/tablette.groupwise.Rd | 4 man/widgets.devalued.Rd | 2 tests/testthat/test-tablet.R | 16 ++ 9 files changed, 177 insertions(+), 63 deletions(-)
Title: Seamless 'Nonmem' Simulation Platform
Description: A complete and seamless 'Nonmem' simulation interface within R. Turns 'Nonmem' control streams into simulation control streams, executes them with specified simulation input data and returns the results. The simulation is performed by 'Nonmem', eliminating manual work and risks of re-implementation of models in other tools.
Author: Philip Delff [aut, cre],
Brian Reilly [ctb],
Sanaya Shroff [ctb]
Maintainer: Philip Delff <philip@delff.dk>
Diff between NMsim versions 0.1.4 dated 2024-11-01 and 0.1.5 dated 2024-11-14
DESCRIPTION | 8 +-- MD5 | 50 +++++++++++-------- NAMESPACE | 5 + NEWS.md | 37 ++++++++++++++ R/NMexec.R | 23 ++++++-- R/NMreadSim.R | 63 ++++++++++++++++-------- R/NMreadSimModTab.R | 7 -- R/NMrunWin.R | 57 +++++++++++----------- R/NMsim.R | 54 +++++++++++---------- R/addEVID2.R | 10 +-- R/dcastSe.R |only R/expandCovs.R | 21 ++++++-- R/reportFailedRun.R |only R/summarizeCovs.R |only README.md | 64 +++++++++++++++---------- man/NMreadSim.Rd | 26 ++++++---- man/NMreadSimModTab.Rd | 20 +++---- man/NMreadSimModTabOne.Rd | 14 ++--- man/addEVID2.Rd | 10 +-- man/expandCovs.Rd | 8 ++- man/figures/ACOP_logo_transp.png |only man/figures/intro-tab.png |only man/summarizeCovs.Rd |only tests/testthat/testReference/expandCovs_01.rds |binary tests/testthat/testReference/expandCovs_02.rds |binary tests/testthat/testReference/expandCovs_03.rds |binary tests/testthat/testReference/expandCovs_04.rds |only tests/testthat/testReference/fnAppend_02.rds |only tests/testthat/testReference/fnAppend_03.rds |only tests/testthat/testReference/fnAppend_1.rds |only tests/testthat/test_expandCovs.R | 23 ++++++++ 31 files changed, 325 insertions(+), 175 deletions(-)
Title: Fetch Data from Yahoo Finance API
Description: Obtain historical and near real time data related to stocks, index
and currencies from the Yahoo Finance API. This package is community maintained
and is not officially supported by 'Yahoo'. The accuracy of data is only as
correct as provided on <https://finance.yahoo.com/>.
Author: Aravind Hebbali [aut, cre]
Maintainer: Aravind Hebbali <hebbali.aravind@gmail.com>
Diff between yahoofinancer versions 0.3.0 dated 2024-02-03 and 0.4.0 dated 2024-11-14
DESCRIPTION | 8 MD5 | 22 +- NEWS.md | 10 + R/ticker.R | 314 +++++++++++------------------------ README.md | 35 ++- man/Ticker-class.Rd | 32 ++- man/yahoofinancer.Rd | 1 tests/testthat/test-currency.R | 2 tests/testthat/test-index.R | 2 tests/testthat/test-market-summary.R | 2 tests/testthat/test-ticker.R | 2 tests/testthat/test-trending.R | 2 12 files changed, 177 insertions(+), 255 deletions(-)
Title: NNG (Nanomsg Next Gen) Lightweight Messaging Library
Description: R binding for NNG (Nanomsg Next Gen), a successor to ZeroMQ. NNG is
a socket library implementing 'Scalability Protocols', a reliable,
high-performance standard for common communications patterns including
publish/subscribe, request/reply and service discovery, over in-process,
IPC, TCP, WebSocket and secure TLS transports. As its own threaded
concurrency framework, provides a toolkit for asynchronous programming and
distributed computing, with intuitive 'aio' objects which resolve
automatically upon completion of asynchronous operations, and
synchronisation primitives allowing R to wait upon events signalled by
concurrent threads.
Author: Charlie Gao [aut, cre] ,
Hibiki AI Limited [cph],
R Consortium [fnd]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between nanonext versions 1.3.1 dated 2024-11-13 and 1.3.2 dated 2024-11-14
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ tests/tests.R | 7 ++++--- 4 files changed, 14 insertions(+), 9 deletions(-)
Title: Copula-Based Regression Models for Multivariate Censored Data
Description: Copula-based regression models for multivariate censored data, including
bivariate right-censored data, bivariate interval-censored data, and right/interval-censored
semi-competing risks data. Currently supports Clayton, Gumbel, Frank, Joe, AMH and
Copula2 copula models. For marginal models, it supports parametric (Weibull, Loglogistic,
Gompertz) and semiparametric (Cox and transformation) models. Includes methods for
convenient prediction and plotting. Also provides a bivariate time-to-event simulation
function and an information ratio-based goodness-of-fit test for copula. Method details
can be found in Sun et.al (2019) Lifetime Data Analysis, Sun et.al (2021) Biostatistics,
Sun et.al (2022) Statistical Methods in Medical Research, Sun et.al (2022) Biometrics, and
Sun et al. (2023+) JRSSC.
Author: Tao Sun [aut, cre] ,
Ying Ding [aut]
Maintainer: Tao Sun <sun.tao@ruc.edu.cn>
Diff between CopulaCenR versions 1.2.3 dated 2023-09-23 and 1.2.4 dated 2024-11-14
DESCRIPTION | 22 ++++++++++++++++------ MD5 | 11 ++++++++--- NAMESPACE | 1 + R/fun_rc_scmprisk_Cox.R |only R/rc_scmprisk_Cox.R |only data/data_scmprisk.RData |binary data/data_scmprisk_rc.RData |only man/data_scmprisk_rc.Rd |only man/rc_scmprisk_Cox.Rd |only 9 files changed, 25 insertions(+), 9 deletions(-)
Title: Miscellaneous Functions for 'SciViews::R'
Description: Functions required for the 'SciViews::R' dialect or for general
use: manage a temporary environment attached to the search path, define
synonyms for R functions using aka(), test if 'Aqua', 'Mac', 'Win' ... Show
progress bar, etc.
Author: Philippe Grosjean [aut, cre] ,
Romain Francois [ctb],
Kamil Barton [ctb]
Maintainer: Philippe Grosjean <phgrosjean@sciviews.org>
Diff between svMisc versions 1.2.3 dated 2021-10-11 and 1.4.3 dated 2024-11-14
svMisc-1.2.3/svMisc/R/Install.R |only svMisc-1.2.3/svMisc/R/pkgman.R |only svMisc-1.4.3/svMisc/DESCRIPTION | 39 svMisc-1.4.3/svMisc/MD5 | 74 - svMisc-1.4.3/svMisc/NAMESPACE | 20 svMisc-1.4.3/svMisc/NEWS.md | 215 ++- svMisc-1.4.3/svMisc/R/about.R | 51 svMisc-1.4.3/svMisc/R/aka.R |only svMisc-1.4.3/svMisc/R/capture_all.R | 2 svMisc-1.4.3/svMisc/R/cut_quantile.R |only svMisc-1.4.3/svMisc/R/file_edit.R | 90 - svMisc-1.4.3/svMisc/R/install.R |only svMisc-1.4.3/svMisc/R/pkgMan.R |only svMisc-1.4.3/svMisc/R/rbenchmark.R |only svMisc-1.4.3/svMisc/R/section.R |only svMisc-1.4.3/svMisc/R/svMisc-package.R | 20 svMisc-1.4.3/svMisc/build/vignette.rds |binary svMisc-1.4.3/svMisc/inst/CITATION | 35 svMisc-1.4.3/svMisc/inst/WORDLIST | 17 svMisc-1.4.3/svMisc/inst/doc/svMisc.R | 8 svMisc-1.4.3/svMisc/inst/doc/svMisc.Rmd | 18 svMisc-1.4.3/svMisc/inst/doc/svMisc.html | 991 ++++++++++------ svMisc-1.4.3/svMisc/inst/doc/temporary_environment.R | 8 svMisc-1.4.3/svMisc/inst/doc/temporary_environment.Rmd | 14 svMisc-1.4.3/svMisc/inst/doc/temporary_environment.html | 240 +++ svMisc-1.4.3/svMisc/inst/figures |only svMisc-1.4.3/svMisc/man/Install.Rd | 2 svMisc-1.4.3/svMisc/man/about.Rd | 8 svMisc-1.4.3/svMisc/man/aka.Rd |only svMisc-1.4.3/svMisc/man/capture_all.Rd | 2 svMisc-1.4.3/svMisc/man/cut_quantile.Rd |only svMisc-1.4.3/svMisc/man/figures |only svMisc-1.4.3/svMisc/man/file_edit.Rd | 12 svMisc-1.4.3/svMisc/man/pkgman_describe.Rd | 2 svMisc-1.4.3/svMisc/man/rbenchmark.Rd |only svMisc-1.4.3/svMisc/man/section.Rd |only svMisc-1.4.3/svMisc/man/svMisc-package.Rd | 11 svMisc-1.4.3/svMisc/po/R-fr.po | 2 svMisc-1.4.3/svMisc/tests/spelling.R | 2 svMisc-1.4.3/svMisc/tests/testthat.R | 8 svMisc-1.4.3/svMisc/tests/testthat/test-capture_all.R | 57 svMisc-1.4.3/svMisc/tests/testthat/test-parse_text.R | 66 - svMisc-1.4.3/svMisc/tests/testthat/test-temp_env.R | 56 svMisc-1.4.3/svMisc/vignettes/svMisc.Rmd | 18 svMisc-1.4.3/svMisc/vignettes/temporary_environment.Rmd | 14 45 files changed, 1353 insertions(+), 749 deletions(-)
Title: MR Spectroscopy Analysis Tools
Description: Tools for reading, visualising and processing Magnetic Resonance
Spectroscopy data. The package includes methods for spectral fitting: Wilson
(2021) <DOI:10.1002/mrm.28385> and spectral alignment: Wilson (2018)
<DOI:10.1002/mrm.27605>.
Author: Martin Wilson [cre, aut] ,
Yong Wang [ctb],
John Muschelli [ctb]
Maintainer: Martin Wilson <martin@pipegrep.co.uk>
Diff between spant versions 2.23.0 dated 2024-08-27 and 2.24.0 dated 2024-11-14
DESCRIPTION | 14 +-- MD5 | 26 +++--- NEWS.md | 5 + R/abfit.R | 129 +++++++++++++++++++++++---------- R/interactive_plotting.R | 12 ++- R/utils.R | 24 ++++-- inst/doc/spant-intro.html | 132 +++++++++++++++++----------------- inst/doc/spant-preprocessing.html | 4 - man/abfit_opts.Rd | 8 ++ man/ortho3.Rd | 5 + tests/testthat/abfit_res_coarse.rds |binary tests/testthat/abfit_res_default.rds |binary tests/testthat/abfit_res_fine.rds |binary tests/testthat/abfit_res_no_optim.rds |binary 14 files changed, 222 insertions(+), 137 deletions(-)
Title: Statistical Methodology for Graphical Extreme Value Models
Description: Statistical methodology for sparse multivariate extreme value models. Methods are
provided for exact simulation and statistical inference for multivariate Pareto distributions
on graphical structures as described in the paper 'Graphical Models for Extremes' by
Engelke and Hitz (2020) <doi:10.1111/rssb.12355>.
Author: Sebastian Engelke [aut, cre],
Adrien S. Hitz [aut],
Nicola Gnecco [aut],
Manuel Hentschel [aut]
Maintainer: Sebastian Engelke <sebastian.engelke@unige.ch>
Diff between graphicalExtremes versions 0.3.2 dated 2024-04-18 and 0.3.3 dated 2024-11-14
DESCRIPTION | 12 ++++---- MD5 | 50 ++++++++++++++++++------------------ R/data.R | 4 +- R/matrix_completions_main.R | 8 +++++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/applicationDanube.html | 45 ++++++++++++++++++++------------ inst/doc/applicationFlights.html | 19 ++++++++----- man/complete_Gamma.Rd | 9 ++++-- man/complete_Gamma_decomposable.Rd | 6 ++-- man/complete_Gamma_general.Rd | 4 +- man/complete_Gamma_general_demo.Rd | 4 +- man/complete_Gamma_general_split.Rd | 4 +- man/data2mpareto.Rd | 2 - man/emp_vario.Rd | 2 - man/emtp2.Rd | 2 - man/flights.Rd | 4 +- man/fmpareto_HR_MLE.Rd | 2 - man/fmpareto_graph_HR.Rd | 2 - man/graphicalExtremes.Rd | 1 man/loglik_HR.Rd | 2 - man/plotFlights.Rd | 2 - man/rmpareto.Rd | 4 +- man/rmpareto_tree.Rd | 4 +- man/rmstable.Rd | 2 - man/rmstable_tree.Rd | 2 - 26 files changed, 110 insertions(+), 86 deletions(-)
More information about graphicalExtremes at CRAN
Permanent link
More information about RobustPrediction at CRAN
Permanent link
More information about RegrCoeffsExplorer at CRAN
Permanent link
Title: Collinearity Detection using Redefined Variance Inflation Factor
and Graphical Methods
Description: The detection of troubling approximate collinearity in a multiple linear regression model is a classical problem in Econometrics. The objective of this package is to detect it using the variance inflation factor redefined and the scatterplot between the variance inflation factor and the coefficient of variation. For more details see Salmerón R., GarcÃa C.B. and GarcÃa J. (2018) <doi:10.1080/00949655.2018.1463376>, Salmerón, R., RodrÃguez, A. and GarcÃa C. (2020) <doi:10.1007/s00180-019-00922-x>, Salmerón, R., GarcÃa, C.B, RodrÃguez, A. and GarcÃa, C. (2022) <doi:10.32614/RJ-2023-010>, Salmerón, R., GarcÃa, C.B. and GarcÃa, J. (2024) <doi:10.1007/s10614-024-10575-8> and Salmerón, R., GarcÃa, C.B, GarcÃa J. (2023, working paper) <doi:10.48550/arXiv.2005.02245>.
Author: R. Salmeron [aut, cre],
C.B. Garcia [aut]
Maintainer: R. Salmeron <romansg@ugr.es>
Diff between rvif versions 1.0 dated 2022-12-22 and 2.0 dated 2024-11-14
DESCRIPTION | 15 +++++++++------ MD5 | 24 +++++++++++++++++++----- NAMESPACE | 4 +++- R/Theorem.R |only data |only man/CDpf.Rd |only man/CV_VIF.Rd | 26 +++++++++++++------------- man/RVIF.Rd | 20 ++++++++++---------- man/SLM1.Rd |only man/SLM2.Rd |only man/Theorem.Rd |only man/Wissel.Rd |only man/employees.Rd |only man/euribor.Rd |only man/rvif-package.Rd | 30 ++++++++++++++++++------------ 15 files changed, 72 insertions(+), 47 deletions(-)
Title: Boundary Adaptive Local Polynomial Conditional Density Estimator
Description: Tools for estimation and inference of conditional densities, derivatives and functions. This is the companion software for Cattaneo, Chandak, Jansson and Ma (2024) <doi:10.3150/23-BEJ1711>.
Author: Rajita Chandak [aut, cre]
Maintainer: Rajita Chandak <rajita.chandak@epfl.ch>
Diff between lpcde versions 0.1.4 dated 2024-04-10 and 0.1.5 dated 2024-11-14
DESCRIPTION | 16 +-- LICENSE |only MD5 | 31 +++--- R/lpbwcde.R | 6 - R/lpbwcde_fns.R | 7 - R/lpcde.R | 28 ++++- R/lpcde_fns.R | 204 +++++++++++++++++++++++++++++++++--------- R/lpcde_methods.R | 18 +-- build/partial.rdb |binary man/S_exact.Rd | 7 - man/cov_hat.Rd | 4 man/lpbwcde.Rd | 4 man/lpcde.Rd | 13 +- man/lpcde_fn.Rd | 3 man/plot.lpcde.Rd | 12 +- tests/testthat/test-lpbwcde.R | 1 tests/testthat/test-lpcde.R | 35 ++++++- 17 files changed, 277 insertions(+), 112 deletions(-)
Title: A Modern and Flexible Web Client for R
Description: Bindings to 'libcurl' <https://curl.se/libcurl/> for performing fully
configurable HTTP/FTP requests where responses can be processed in memory, on
disk, or streaming via the callback or connection interfaces. Some knowledge
of 'libcurl' is recommended; for a more-user-friendly web client see the
'httr2' package which builds on this package with http specific tools and logic.
Author: Jeroen Ooms [aut, cre] ,
Hadley Wickham [ctb],
Posit Software, PBC [cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between curl versions 6.0.0 dated 2024-11-05 and 6.0.1 dated 2024-11-14
DESCRIPTION | 6 +- MD5 | 24 ++++----- NEWS | 6 +- R/multi.R | 3 - R/options.R | 32 ++++++------ R/parser.R | 2 configure | 2 inst/doc/intro.html | 98 +++++++++++++++++++-------------------- man/curl_parse_url.Rd | 2 src/Makevars.win | 1 src/curl.c | 3 + src/multi.c | 20 +++++++ tests/testthat/test-connection.R | 10 +++ 13 files changed, 122 insertions(+), 87 deletions(-)
Title: Statistical Methods for Phenology Analysis in Temperate Fruit
Trees
Description: The phenology of plants (i.e. the timing of their annual life
phases) depends on climatic cues. For temperate trees and many other plants,
spring phases, such as leaf emergence and flowering, have been found to result
from the effects of both cool (chilling) conditions and heat. Fruit tree
scientists (pomologists) have developed some metrics to quantify chilling
and heat (e.g. see Luedeling (2012) <doi:10.1016/j.scienta.2012.07.011>).
'chillR' contains functions for processing temperature records into
chilling (Chilling Hours, Utah Chill Units and Chill Portions) and heat units
(Growing Degree Hours). Regarding chilling metrics, Chill Portions are often
considered the most promising, but they are difficult to calculate. This package
makes it easy. 'chillR' also contains procedures for conducting a PLS analysis
relating phenological dates (e.g. bloom dates) to either mean temperatures or
mean chill and heat accumulation rates, based on long-term weather and phenology
records (Lued [...truncated...]
Author: Eike Luedeling [aut, cre] ,
Lars Caspersen [aut] ,
Eduardo Fernandez [aut]
Maintainer: Eike Luedeling <eike@eikeluedeling.com>
Diff between chillR versions 0.75 dated 2023-11-27 and 0.76 dated 2024-11-14
chillR-0.75/chillR/build/partial.rdb |only chillR-0.76/chillR/DESCRIPTION | 18 - chillR-0.76/chillR/MD5 | 33 - chillR-0.76/chillR/NAMESPACE | 2 chillR-0.76/chillR/R/chillR-package.R | 8 chillR-0.76/chillR/R/download_baseline_cmip6_ecmwfr.R | 50 +- chillR-0.76/chillR/R/download_cmip6_ecmwfr.R | 251 ++++++++------- chillR-0.76/chillR/R/plot_phenology_trends.R | 6 chillR-0.76/chillR/R/plot_scenarios.R | 6 chillR-0.76/chillR/build/vignette.rds |binary chillR-0.76/chillR/inst/doc/PhenoFlex.R | 6 chillR-0.76/chillR/inst/doc/PhenoFlex.html | 101 ++++-- chillR-0.76/chillR/inst/doc/hourly_temperatures.html | 25 - chillR-0.76/chillR/man/chillR-package.Rd | 32 - chillR-0.76/chillR/man/download_baseline_cmip6_ecmwfr.Rd | 27 - chillR-0.76/chillR/man/download_cmip6_ecmwfr.Rd | 33 - chillR-0.76/chillR/man/plot_phenology_trends.Rd | 6 chillR-0.76/chillR/man/plot_scenarios.Rd | 6 18 files changed, 341 insertions(+), 269 deletions(-)
Title: Estimate Chla Concentrations of Phytoplankton Groups
Description: Determine the chlorophyll a (Chl a) concentrations of different
phytoplankton groups based on their pigment biomarkers. The method uses
non-negative matrix factorisation and simulated annealing to minimise error
between the observed and estimated values of pigment concentrations
(Hayward et al. (2023) <doi:10.1002/lom3.10541>).
The approach is similar to the widely used 'CHEMTAX' program
(Mackey et al. 1996) <doi:10.3354/meps144265>, but is more straightforward,
accurate, and not reliant on initial guesses for the pigment to Chl a
ratios for phytoplankton groups.
Author: Alexander Hayward [aut, cre, cph],
Tylar Murray [aut],
Andy McKenzie [aut]
Maintainer: Alexander Hayward <phytoclass@outlook.com>
Diff between phytoclass versions 1.2.0 dated 2024-05-11 and 2.0.0 dated 2024-11-14
DESCRIPTION | 16 MD5 | 34 - NEWS.md | 2 R/Matrix_checks.R | 4 R/NNLS_MF_Final.R | 2 R/Prochloro_NNLS_MF_Final.R | 10 R/Prochloro_Random_Neighbour.R | 12 R/Prochloro_Random_Neighbour2.R | 31 - R/Prochloro_Sim_Anneal.R | 28 R/Prochloro_wrangling.R | 6 R/simulated_annealing.R | 2 R/simulated_annealing_prochloro.R | 110 +-- build/vignette.rds |binary inst/doc/phytoclass-vignette.html | 1073 ++++++++++++++++++----------------- man/Prochloro_Random_Neighbour_2.Rd | 6 man/simulated_annealing.Rd | 62 +- man/simulated_annealing_Prochloro.Rd | 2 tests |only 18 files changed, 775 insertions(+), 625 deletions(-)
Title: Multidimensional Item Response Theory
Description: Analysis of discrete response data using
unidimensional and multidimensional item analysis models under the Item
Response Theory paradigm (Chalmers (2012) <doi:10.18637/jss.v048.i06>).
Exploratory and confirmatory item factor analysis models
are estimated with quadrature (EM) or stochastic (MHRM) methods. Confirmatory
bi-factor and two-tier models are available for modeling item testlets using
dimension reduction EM algorithms, while multiple group analyses and
mixed effects designs are included for detecting differential item, bundle,
and test functioning, and for modeling item and person covariates.
Finally, latent class models such as the DINA, DINO, multidimensional latent class,
mixture IRT models, and zero-inflated response models are supported.
Author: Phil Chalmers [aut, cre] ,
Joshua Pritikin [ctb],
Alexander Robitzsch [ctb],
Mateusz Zoltak [ctb],
KwonHyun Kim [ctb],
Carl F. Falk [ctb],
Adam Meade [ctb],
Lennart Schneider [ctb],
David King [ctb],
Chen-Wei Liu [ctb],
Ogreden Oguzhan [ctb]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>
Diff between mirt versions 1.42 dated 2024-07-14 and 1.43 dated 2024-11-14
mirt-1.42/mirt/tests/tests |only mirt-1.43/mirt/DESCRIPTION | 12 - mirt-1.43/mirt/MD5 | 166 +++++++------ mirt-1.43/mirt/NAMESPACE | 4 mirt-1.43/mirt/NEWS.md | 29 ++ mirt-1.43/mirt/R/01-itemclass.R | 2 mirt-1.43/mirt/R/02a-general_methods.R | 5 mirt-1.43/mirt/R/02b-item_methods.R | 268 +++++++++++++++------- mirt-1.43/mirt/R/03-estimation.R | 66 +++-- mirt-1.43/mirt/R/05-model.elements.R | 8 mirt-1.43/mirt/R/06-LoadPars.R | 80 +++++- mirt-1.43/mirt/R/08-SE.methods.R | 38 ++- mirt-1.43/mirt/R/DIF.R | 5 mirt-1.43/mirt/R/DRF.R | 10 mirt-1.43/mirt/R/DTF.R | 6 mirt-1.43/mirt/R/EMstep.group.R | 59 +++- mirt-1.43/mirt/R/EMstep.utils.R | 11 mirt-1.43/mirt/R/M2.R | 96 +++----- mirt-1.43/mirt/R/MDIFF.R | 3 mirt-1.43/mirt/R/MHRM.group.R | 8 mirt-1.43/mirt/R/Mixed-methods.R | 38 ++- mirt-1.43/mirt/R/Mixture-methods.R | 4 mirt-1.43/mirt/R/MultipleGroup-methods.R | 4 mirt-1.43/mirt/R/PLCI.mirt.R | 4 mirt-1.43/mirt/R/RCI.R | 347 +++++++++++++++++++++++------ mirt-1.43/mirt/R/SIBTEST.R | 2 mirt-1.43/mirt/R/SingleGroup-methods.R | 71 ++++- mirt-1.43/mirt/R/boot.mirt.R | 2 mirt-1.43/mirt/R/empirical_ES.R | 2 mirt-1.43/mirt/R/estfun.R | 43 ++- mirt-1.43/mirt/R/extract.mirt.R | 11 mirt-1.43/mirt/R/fscores.R | 8 mirt-1.43/mirt/R/fscores.internal.R | 45 +++ mirt-1.43/mirt/R/gen.difficulty.R | 2 mirt-1.43/mirt/R/itemfit.R | 10 mirt-1.43/mirt/R/itemplot.internal.R | 26 +- mirt-1.43/mirt/R/itemstats.R | 1 mirt-1.43/mirt/R/lagrange.R | 2 mirt-1.43/mirt/R/marginal_rxx.R | 13 - mirt-1.43/mirt/R/mirt.R | 201 ++++++++++++++-- mirt-1.43/mirt/R/mixedmirt.R | 17 + mirt-1.43/mirt/R/mod2values.R | 37 ++- mirt-1.43/mirt/R/multipleGroup.R | 8 mirt-1.43/mirt/R/personfit.R | 12 - mirt-1.43/mirt/R/simdata.R | 45 ++- mirt-1.43/mirt/R/utils.R | 205 ++++++++++++++--- mirt-1.43/mirt/man/M2.Rd | 7 mirt-1.43/mirt/man/RCI.Rd | 73 ++++-- mirt-1.43/mirt/man/estfun.AllModelClass.Rd | 23 + mirt-1.43/mirt/man/extract.mirt.Rd | 5 mirt-1.43/mirt/man/fscores.Rd | 6 mirt-1.43/mirt/man/marginal_rxx.Rd | 12 - mirt-1.43/mirt/man/mirt.Rd | 198 ++++++++++++++-- mirt-1.43/mirt/man/mixedmirt.Rd | 6 mirt-1.43/mirt/man/mod2values.Rd | 18 + mirt-1.43/mirt/man/multipleGroup.Rd | 6 mirt-1.43/mirt/src/dpars.cpp | 16 - mirt-1.43/mirt/src/traceLinePts.cpp | 66 ++++- mirt-1.43/mirt/src/traceLinePts.h | 3 mirt-1.43/mirt/tests/testthat |only 60 files changed, 1845 insertions(+), 630 deletions(-)
Title: Multi-Armed Qini
Description: Policy evaluation using generalized Qini curves: Evaluate data-driven treatment
targeting rules for one or more treatment arms over different budget
constraints in experimental or observational settings under unconfoundedness.
Author: Erik Sverdrup [aut, cre],
Han Wu [aut],
Susan Athey [aut],
Stefan Wager [aut]
Maintainer: Erik Sverdrup <erik.sverdrup@monash.edu>
Diff between maq versions 0.4.0 dated 2024-04-18 and 0.5.0 dated 2024-11-14
DESCRIPTION | 14 ++++++++------ MD5 | 14 +++++++------- R/get_ipw_scores.R | 4 +--- R/maq.R | 17 +++++++++-------- R/plot.R | 37 ++++++++++++++++++++++++++++++++++++- man/get_ipw_scores.Rd | 4 +--- man/maq.Rd | 16 +++++++++------- man/plot.maq.Rd | 35 +++++++++++++++++++++++++++++++++++ 8 files changed, 106 insertions(+), 35 deletions(-)
Title: 'R6'-Based Flexible Framework for Permutation Tests
Description: Implements non-parametric tests from Higgins (2004, ISBN:0534387756), including tests for one sample, two samples, k samples, paired comparisons, blocked designs, trends and association. Built with 'Rcpp' for efficiency and 'R6' for flexible, object-oriented design, the package provides a unified framework for performing or creating custom permutation tests.
Author: Yan Du [aut, cre]
Maintainer: Yan Du <isduyan@outlook.com>
Diff between LearnNonparam versions 1.2.4 dated 2024-11-12 and 1.2.5 dated 2024-11-14
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- NAMESPACE | 2 +- NEWS.md | 6 ++++++ R/CDF.R | 4 ++-- R/MultipleComparison.R | 20 +++++++++++--------- R/PairedDifference.R | 2 +- R/PermuTest.R | 16 +++++++--------- R/do_call.R | 26 +++++++++++++++++--------- R/pmt.R | 29 +++++++++++++++++------------ man/PermuTest.Rd | 2 +- man/pmt.Rd | 10 ++++++++-- 12 files changed, 85 insertions(+), 60 deletions(-)
Title: Miscellaneous Extensions to 'ggplot2'
Description: Extensions to 'ggplot2' respecting the grammar of graphics
paradigm. Statistics: locate and tag peaks and valleys; label plot with the
equation of a fitted polynomial or other types of models; labels
with P-value, R^2 or adjusted R^2 or information criteria for fitted models;
label with ANOVA table for fitted models; label with summary for fitted
models. Model fit classes for which suitable methods are provided by package
'broom' and 'broom.mixed' are supported. Scales and stats to build volcano
and quadrant plots based on outcomes, fold changes, p-values and false
discovery rates.
Author: Pedro J. Aphalo [aut, cre] ,
Kamil Slowikowski [ctb] ,
Samer Mouksassi [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between ggpmisc versions 0.6.0 dated 2024-06-27 and 0.6.1 dated 2024-11-14
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Title: A 'shiny' App to Compare Two Data Frames
Description: A tool developed with the 'Golem' framework which provides
an easier way to check cells differences between two data
frames. The user provides two data frames for comparison,
selects IDs variables identifying each row of input data,
then clicks a button to perform the comparison. Several
'R' package functions are used to describe the data
and perform the comparison in the server of the
application. The main ones are comparedf() from 'arsenal'
and skim() from 'skimr'. For more details see the
description of comparedf() from the 'arsenal' package and
that of skim() from the 'skimr' package.
Author: Sergio Ewane Ebouele [aut, cre]
Maintainer: Sergio Ewane Ebouele <info@dataforknow.com>
Diff between dataCompare versions 1.0.2 dated 2024-11-11 and 1.0.3 dated 2024-11-14
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Title: 'C++' Standard Template Library Containers
Description: Use 'C++' Standard Template Library containers interactively in R. Includes sets, unordered sets, multisets, unordered multisets, maps,
unordered maps, multimaps, unordered multimaps, stacks, queues, priority queues, vectors, deques, forward lists, and lists.
Author: Christian Dueben [aut, cre]
Maintainer: Christian Dueben <cdueben.ml+cran@proton.me>
Diff between cppcontainers versions 1.0.0 dated 2024-11-13 and 1.0.1 dated 2024-11-14
DESCRIPTION | 6 +- MD5 | 4 - tests/testthat/test-print.R | 122 ++++++++++++++++++++++---------------------- 3 files changed, 67 insertions(+), 65 deletions(-)
Title: Inference Based on Non-Probability Samples
Description: Statistical inference with non-probability samples when auxiliary information from external sources such as probability samples or population totals or means is available. Details can be found in: Wu et al. (2020) <doi:10.1080/01621459.2019.1677241>, Kim et al. (2021) <doi:10.1111/rssa.12696>, Wu et al. (2023) <https://www150.statcan.gc.ca/n1/pub/12-001-x/2022002/article/00002-eng.htm>, Kim et al. (2021) <https://www150.statcan.gc.ca/n1/pub/12-001-x/2021001/article/00004-eng.htm>, Kim et al. (2020) <doi:10.1111/rssb.12354>.
Author: Lukasz Chrostowski [aut, cre],
Maciej Beresewicz [aut, ctb] ,
Piotr Chlebicki [aut, ctb]
Maintainer: Lukasz Chrostowski <lukchr@st.amu.edu.pl>
Diff between nonprobsvy versions 0.1.0 dated 2024-04-04 and 0.1.1 dated 2024-11-14
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Title: A 'ggplot2' Extension for Consistent Axis Alignment
Description: A 'ggplot2' extension offers various tools for organizing and arranging plots.
It is designed to consistently align a specific axis across multiple 'ggplot' objects,
making it especially useful for plots requiring data order manipulation. A typical use
case includes organizing combinations like a dendrogram and a heatmap.
Author: Yun Peng [aut, cre]
Maintainer: Yun Peng <yunyunp96@163.com>
Diff between ggalign versions 0.0.4 dated 2024-10-12 and 0.0.5 dated 2024-11-14
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Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-10-31 0.1.1
2024-10-30 0.1.0
2024-10-10 0.0.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-08-20 0.1.2
Title: Toolkit for HLA Immunogenomics
Description: A toolkit for the analysis and management of data for genes in the so-called "Human Leukocyte Antigen" (HLA) region. Functions extract reference data from the Anthony Nolan HLA Informatics Group/ImmunoGeneTics HLA 'GitHub' repository (ANHIG/IMGTHLA) <https://github.com/ANHIG/IMGTHLA>, validate Genotype List (GL) Strings, convert between UNIFORMAT and GL String Code (GLSC) formats, translate HLA alleles and GLSCs across ImmunoPolymorphism Database (IPD) IMGT/HLA Database release versions, identify differences between pairs of alleles at a locus, generate customized, multi-position sequence alignments, trim and convert allele-names across nomenclature epochs, and extend existing data-analysis methods.
Author: Livia Tran [aut],
Ryan Nickens [aut],
Leamon Crooms IV [aut],
Derek Pappas [aut],
Vinh Luu [ctb],
Josh Bredeweg [ctb],
Steven Mack [aut, cre]
Maintainer: Steven Mack <Steven.Mack@ucsf.edu>
Diff between HLAtools versions 1.2.0 dated 2024-09-02 and 1.3.0 dated 2024-11-14
DESCRIPTION | 6 MD5 | 45 ++-- NAMESPACE | 1 NEWS.md | 10 + R/GIANT.R | 2 R/accessoryFunctions.R | 42 ++++ R/atlasMaker.R | 2 R/buildAlignments.R | 18 - R/data.R | 2 R/locusValidator.R | 16 - README.md | 19 + data/HLAatlas.rda |binary data/HLAgazeteer.rda |binary data/alleleListHistory.rda |binary data/fragmentFeatureNames.rda |binary inst/doc/HLAtools.Rmd | 406 +++++++++++++++++++++--------------------- inst/doc/HLAtools.html | 166 +++++++---------- man/GIANT.Rd | 2 man/buildAlignments.Rd | 2 man/fragmentFeatureNames.Rd | 2 man/multiQueryRelease.Rd |only man/queryRelease.Rd | 4 man/validateLocus.Rd | 6 vignettes/HLAtools.Rmd | 406 +++++++++++++++++++++--------------------- 24 files changed, 605 insertions(+), 552 deletions(-)