Title: Boundary Adaptive Local Polynomial Conditional Density Estimator
Description: Tools for estimation and inference of conditional densities, derivatives and functions. This is the companion software for Cattaneo, Chandak, Jansson and Ma (2024) <doi:10.3150/23-BEJ1711>.
Author: Rajita Chandak [aut, cre]
Maintainer: Rajita Chandak <rajita.chandak@epfl.ch>
Diff between lpcde versions 0.1.4 dated 2024-04-10 and 0.1.5 dated 2024-11-14
DESCRIPTION | 16 +-- LICENSE |only MD5 | 31 +++--- R/lpbwcde.R | 6 - R/lpbwcde_fns.R | 7 - R/lpcde.R | 28 ++++- R/lpcde_fns.R | 204 +++++++++++++++++++++++++++++++++--------- R/lpcde_methods.R | 18 +-- build/partial.rdb |binary man/S_exact.Rd | 7 - man/cov_hat.Rd | 4 man/lpbwcde.Rd | 4 man/lpcde.Rd | 13 +- man/lpcde_fn.Rd | 3 man/plot.lpcde.Rd | 12 +- tests/testthat/test-lpbwcde.R | 1 tests/testthat/test-lpcde.R | 35 ++++++- 17 files changed, 277 insertions(+), 112 deletions(-)
Title: A Modern and Flexible Web Client for R
Description: Bindings to 'libcurl' <https://curl.se/libcurl/> for performing fully
configurable HTTP/FTP requests where responses can be processed in memory, on
disk, or streaming via the callback or connection interfaces. Some knowledge
of 'libcurl' is recommended; for a more-user-friendly web client see the
'httr2' package which builds on this package with http specific tools and logic.
Author: Jeroen Ooms [aut, cre] ,
Hadley Wickham [ctb],
Posit Software, PBC [cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between curl versions 6.0.0 dated 2024-11-05 and 6.0.1 dated 2024-11-14
DESCRIPTION | 6 +- MD5 | 24 ++++----- NEWS | 6 +- R/multi.R | 3 - R/options.R | 32 ++++++------ R/parser.R | 2 configure | 2 inst/doc/intro.html | 98 +++++++++++++++++++-------------------- man/curl_parse_url.Rd | 2 src/Makevars.win | 1 src/curl.c | 3 + src/multi.c | 20 +++++++ tests/testthat/test-connection.R | 10 +++ 13 files changed, 122 insertions(+), 87 deletions(-)
Title: Statistical Methods for Phenology Analysis in Temperate Fruit
Trees
Description: The phenology of plants (i.e. the timing of their annual life
phases) depends on climatic cues. For temperate trees and many other plants,
spring phases, such as leaf emergence and flowering, have been found to result
from the effects of both cool (chilling) conditions and heat. Fruit tree
scientists (pomologists) have developed some metrics to quantify chilling
and heat (e.g. see Luedeling (2012) <doi:10.1016/j.scienta.2012.07.011>).
'chillR' contains functions for processing temperature records into
chilling (Chilling Hours, Utah Chill Units and Chill Portions) and heat units
(Growing Degree Hours). Regarding chilling metrics, Chill Portions are often
considered the most promising, but they are difficult to calculate. This package
makes it easy. 'chillR' also contains procedures for conducting a PLS analysis
relating phenological dates (e.g. bloom dates) to either mean temperatures or
mean chill and heat accumulation rates, based on long-term weather and phenology
records (Lued [...truncated...]
Author: Eike Luedeling [aut, cre] ,
Lars Caspersen [aut] ,
Eduardo Fernandez [aut]
Maintainer: Eike Luedeling <eike@eikeluedeling.com>
Diff between chillR versions 0.75 dated 2023-11-27 and 0.76 dated 2024-11-14
chillR-0.75/chillR/build/partial.rdb |only chillR-0.76/chillR/DESCRIPTION | 18 - chillR-0.76/chillR/MD5 | 33 - chillR-0.76/chillR/NAMESPACE | 2 chillR-0.76/chillR/R/chillR-package.R | 8 chillR-0.76/chillR/R/download_baseline_cmip6_ecmwfr.R | 50 +- chillR-0.76/chillR/R/download_cmip6_ecmwfr.R | 251 ++++++++------- chillR-0.76/chillR/R/plot_phenology_trends.R | 6 chillR-0.76/chillR/R/plot_scenarios.R | 6 chillR-0.76/chillR/build/vignette.rds |binary chillR-0.76/chillR/inst/doc/PhenoFlex.R | 6 chillR-0.76/chillR/inst/doc/PhenoFlex.html | 101 ++++-- chillR-0.76/chillR/inst/doc/hourly_temperatures.html | 25 - chillR-0.76/chillR/man/chillR-package.Rd | 32 - chillR-0.76/chillR/man/download_baseline_cmip6_ecmwfr.Rd | 27 - chillR-0.76/chillR/man/download_cmip6_ecmwfr.Rd | 33 - chillR-0.76/chillR/man/plot_phenology_trends.Rd | 6 chillR-0.76/chillR/man/plot_scenarios.Rd | 6 18 files changed, 341 insertions(+), 269 deletions(-)
Title: Estimate Chla Concentrations of Phytoplankton Groups
Description: Determine the chlorophyll a (Chl a) concentrations of different
phytoplankton groups based on their pigment biomarkers. The method uses
non-negative matrix factorisation and simulated annealing to minimise error
between the observed and estimated values of pigment concentrations
(Hayward et al. (2023) <doi:10.1002/lom3.10541>).
The approach is similar to the widely used 'CHEMTAX' program
(Mackey et al. 1996) <doi:10.3354/meps144265>, but is more straightforward,
accurate, and not reliant on initial guesses for the pigment to Chl a
ratios for phytoplankton groups.
Author: Alexander Hayward [aut, cre, cph],
Tylar Murray [aut],
Andy McKenzie [aut]
Maintainer: Alexander Hayward <phytoclass@outlook.com>
Diff between phytoclass versions 1.2.0 dated 2024-05-11 and 2.0.0 dated 2024-11-14
DESCRIPTION | 16 MD5 | 34 - NEWS.md | 2 R/Matrix_checks.R | 4 R/NNLS_MF_Final.R | 2 R/Prochloro_NNLS_MF_Final.R | 10 R/Prochloro_Random_Neighbour.R | 12 R/Prochloro_Random_Neighbour2.R | 31 - R/Prochloro_Sim_Anneal.R | 28 R/Prochloro_wrangling.R | 6 R/simulated_annealing.R | 2 R/simulated_annealing_prochloro.R | 110 +-- build/vignette.rds |binary inst/doc/phytoclass-vignette.html | 1073 ++++++++++++++++++----------------- man/Prochloro_Random_Neighbour_2.Rd | 6 man/simulated_annealing.Rd | 62 +- man/simulated_annealing_Prochloro.Rd | 2 tests |only 18 files changed, 775 insertions(+), 625 deletions(-)
Title: Multidimensional Item Response Theory
Description: Analysis of discrete response data using
unidimensional and multidimensional item analysis models under the Item
Response Theory paradigm (Chalmers (2012) <doi:10.18637/jss.v048.i06>).
Exploratory and confirmatory item factor analysis models
are estimated with quadrature (EM) or stochastic (MHRM) methods. Confirmatory
bi-factor and two-tier models are available for modeling item testlets using
dimension reduction EM algorithms, while multiple group analyses and
mixed effects designs are included for detecting differential item, bundle,
and test functioning, and for modeling item and person covariates.
Finally, latent class models such as the DINA, DINO, multidimensional latent class,
mixture IRT models, and zero-inflated response models are supported.
Author: Phil Chalmers [aut, cre] ,
Joshua Pritikin [ctb],
Alexander Robitzsch [ctb],
Mateusz Zoltak [ctb],
KwonHyun Kim [ctb],
Carl F. Falk [ctb],
Adam Meade [ctb],
Lennart Schneider [ctb],
David King [ctb],
Chen-Wei Liu [ctb],
Ogreden Oguzhan [ctb]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>
Diff between mirt versions 1.42 dated 2024-07-14 and 1.43 dated 2024-11-14
mirt-1.42/mirt/tests/tests |only mirt-1.43/mirt/DESCRIPTION | 12 - mirt-1.43/mirt/MD5 | 166 +++++++------ mirt-1.43/mirt/NAMESPACE | 4 mirt-1.43/mirt/NEWS.md | 29 ++ mirt-1.43/mirt/R/01-itemclass.R | 2 mirt-1.43/mirt/R/02a-general_methods.R | 5 mirt-1.43/mirt/R/02b-item_methods.R | 268 +++++++++++++++------- mirt-1.43/mirt/R/03-estimation.R | 66 +++-- mirt-1.43/mirt/R/05-model.elements.R | 8 mirt-1.43/mirt/R/06-LoadPars.R | 80 +++++- mirt-1.43/mirt/R/08-SE.methods.R | 38 ++- mirt-1.43/mirt/R/DIF.R | 5 mirt-1.43/mirt/R/DRF.R | 10 mirt-1.43/mirt/R/DTF.R | 6 mirt-1.43/mirt/R/EMstep.group.R | 59 +++- mirt-1.43/mirt/R/EMstep.utils.R | 11 mirt-1.43/mirt/R/M2.R | 96 +++----- mirt-1.43/mirt/R/MDIFF.R | 3 mirt-1.43/mirt/R/MHRM.group.R | 8 mirt-1.43/mirt/R/Mixed-methods.R | 38 ++- mirt-1.43/mirt/R/Mixture-methods.R | 4 mirt-1.43/mirt/R/MultipleGroup-methods.R | 4 mirt-1.43/mirt/R/PLCI.mirt.R | 4 mirt-1.43/mirt/R/RCI.R | 347 +++++++++++++++++++++++------ mirt-1.43/mirt/R/SIBTEST.R | 2 mirt-1.43/mirt/R/SingleGroup-methods.R | 71 ++++- mirt-1.43/mirt/R/boot.mirt.R | 2 mirt-1.43/mirt/R/empirical_ES.R | 2 mirt-1.43/mirt/R/estfun.R | 43 ++- mirt-1.43/mirt/R/extract.mirt.R | 11 mirt-1.43/mirt/R/fscores.R | 8 mirt-1.43/mirt/R/fscores.internal.R | 45 +++ mirt-1.43/mirt/R/gen.difficulty.R | 2 mirt-1.43/mirt/R/itemfit.R | 10 mirt-1.43/mirt/R/itemplot.internal.R | 26 +- mirt-1.43/mirt/R/itemstats.R | 1 mirt-1.43/mirt/R/lagrange.R | 2 mirt-1.43/mirt/R/marginal_rxx.R | 13 - mirt-1.43/mirt/R/mirt.R | 201 ++++++++++++++-- mirt-1.43/mirt/R/mixedmirt.R | 17 + mirt-1.43/mirt/R/mod2values.R | 37 ++- mirt-1.43/mirt/R/multipleGroup.R | 8 mirt-1.43/mirt/R/personfit.R | 12 - mirt-1.43/mirt/R/simdata.R | 45 ++- mirt-1.43/mirt/R/utils.R | 205 ++++++++++++++--- mirt-1.43/mirt/man/M2.Rd | 7 mirt-1.43/mirt/man/RCI.Rd | 73 ++++-- mirt-1.43/mirt/man/estfun.AllModelClass.Rd | 23 + mirt-1.43/mirt/man/extract.mirt.Rd | 5 mirt-1.43/mirt/man/fscores.Rd | 6 mirt-1.43/mirt/man/marginal_rxx.Rd | 12 - mirt-1.43/mirt/man/mirt.Rd | 198 ++++++++++++++-- mirt-1.43/mirt/man/mixedmirt.Rd | 6 mirt-1.43/mirt/man/mod2values.Rd | 18 + mirt-1.43/mirt/man/multipleGroup.Rd | 6 mirt-1.43/mirt/src/dpars.cpp | 16 - mirt-1.43/mirt/src/traceLinePts.cpp | 66 ++++- mirt-1.43/mirt/src/traceLinePts.h | 3 mirt-1.43/mirt/tests/testthat |only 60 files changed, 1845 insertions(+), 630 deletions(-)
Title: Multi-Armed Qini
Description: Policy evaluation using generalized Qini curves: Evaluate data-driven treatment
targeting rules for one or more treatment arms over different budget
constraints in experimental or observational settings under unconfoundedness.
Author: Erik Sverdrup [aut, cre],
Han Wu [aut],
Susan Athey [aut],
Stefan Wager [aut]
Maintainer: Erik Sverdrup <erik.sverdrup@monash.edu>
Diff between maq versions 0.4.0 dated 2024-04-18 and 0.5.0 dated 2024-11-14
DESCRIPTION | 14 ++++++++------ MD5 | 14 +++++++------- R/get_ipw_scores.R | 4 +--- R/maq.R | 17 +++++++++-------- R/plot.R | 37 ++++++++++++++++++++++++++++++++++++- man/get_ipw_scores.Rd | 4 +--- man/maq.Rd | 16 +++++++++------- man/plot.maq.Rd | 35 +++++++++++++++++++++++++++++++++++ 8 files changed, 106 insertions(+), 35 deletions(-)
Title: 'R6'-Based Flexible Framework for Permutation Tests
Description: Implements non-parametric tests from Higgins (2004, ISBN:0534387756), including tests for one sample, two samples, k samples, paired comparisons, blocked designs, trends and association. Built with 'Rcpp' for efficiency and 'R6' for flexible, object-oriented design, the package provides a unified framework for performing or creating custom permutation tests.
Author: Yan Du [aut, cre]
Maintainer: Yan Du <isduyan@outlook.com>
Diff between LearnNonparam versions 1.2.4 dated 2024-11-12 and 1.2.5 dated 2024-11-14
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- NAMESPACE | 2 +- NEWS.md | 6 ++++++ R/CDF.R | 4 ++-- R/MultipleComparison.R | 20 +++++++++++--------- R/PairedDifference.R | 2 +- R/PermuTest.R | 16 +++++++--------- R/do_call.R | 26 +++++++++++++++++--------- R/pmt.R | 29 +++++++++++++++++------------ man/PermuTest.Rd | 2 +- man/pmt.Rd | 10 ++++++++-- 12 files changed, 85 insertions(+), 60 deletions(-)
Title: Miscellaneous Extensions to 'ggplot2'
Description: Extensions to 'ggplot2' respecting the grammar of graphics
paradigm. Statistics: locate and tag peaks and valleys; label plot with the
equation of a fitted polynomial or other types of models; labels
with P-value, R^2 or adjusted R^2 or information criteria for fitted models;
label with ANOVA table for fitted models; label with summary for fitted
models. Model fit classes for which suitable methods are provided by package
'broom' and 'broom.mixed' are supported. Scales and stats to build volcano
and quadrant plots based on outcomes, fold changes, p-values and false
discovery rates.
Author: Pedro J. Aphalo [aut, cre] ,
Kamil Slowikowski [ctb] ,
Samer Mouksassi [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between ggpmisc versions 0.6.0 dated 2024-06-27 and 0.6.1 dated 2024-11-14
DESCRIPTION | 10 MD5 | 156 +-- NEWS.md | 8 R/stat-fit-broom-tb.R | 6 R/stat-fit-broom.R | 108 +- R/stat-fit-deviations.R | 23 R/stat-fit-residuals.R | 5 R/stat-ma-eq.R | 3 R/stat-multcomp.R | 3 R/stat-peaks.R | 12 R/stat-poly-eq.R | 3 R/stat-poly-line.R | 6 R/stat-quant-eq.R | 49 - README.md | 46 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/model-based-annotations.R | 8 inst/doc/model-based-annotations.html | 414 +++++----- man/figures/README-unnamed-chunk-1-1.png |binary man/stat_fit_augment.Rd | 43 - man/stat_fit_deviations.Rd | 20 man/stat_fit_glance.Rd | 34 man/stat_fit_residuals.Rd | 20 man/stat_fit_tb.Rd | 20 man/stat_fit_tidy.Rd | 37 man/stat_peaks.Rd | 26 tests/testthat/_snaps/stat-broom/augment-method-args.svg | 3 tests/testthat/_snaps/stat-broom/augment-method-default-noload.svg | 3 tests/testthat/_snaps/stat-broom/augment-method-default.svg | 3 tests/testthat/_snaps/stat-broom/augment-method-lm-char.svg | 3 tests/testthat/_snaps/stat-broom/augment-method-lm-fun.svg | 3 tests/testthat/_snaps/stat-multcomp/stat-multcomp-bars-tukey2.svg | 44 - tests/testthat/_snaps/stat-multcomp/stat-multcomp-letters-label-tukey.svg | 52 - tests/testthat/_snaps/stat-multcomp/stat-multcomp-letters-tukey-many-levels.svg | 20 tests/testthat/_snaps/stat-multcomp/stat-multcomp-letters-tukey-mixed.svg | 40 tests/testthat/_snaps/stat-multcomp/stat-multcomp-letters-tukey-rev.svg | 40 tests/testthat/_snaps/stat-multcomp/stat-multcomp-letters-tukey.svg | 40 tests/testthat/_snaps/stat-multcomp/stat-multcomp-y-bottom-num-letters-tukey.svg | 40 tests/testthat/_snaps/stat-multcomp/stat-multcomp-y-bottom-tukey.svg | 40 tests/testthat/_snaps/stat-multcomp/stat-multcomp-y-top-num-letters-tukey.svg | 40 tests/testthat/_snaps/stat-peaks/stat-peaks-date-02.svg | 12 tests/testthat/_snaps/stat-peaks/stat-peaks-date-03.svg | 12 tests/testthat/_snaps/stat-peaks/stat-peaks-date-04.svg | 60 - tests/testthat/_snaps/stat-peaks/stat-peaks-date-05.svg | 60 - tests/testthat/_snaps/stat-peaks/stat-peaks-datetime-02.svg | 12 tests/testthat/_snaps/stat-peaks/stat-peaks-datetime-03.svg | 12 tests/testthat/_snaps/stat-peaks/stat-peaks-datetime-04.svg | 60 - tests/testthat/_snaps/stat-peaks/stat-peaks-datetime-05.svg | 60 - tests/testthat/_snaps/stat-peaks/stat-peaks-numeric-02.svg | 12 tests/testthat/_snaps/stat-peaks/stat-peaks-numeric-03.svg | 12 tests/testthat/_snaps/stat-peaks/stat-peaks-numeric-04.svg | 60 - tests/testthat/_snaps/stat-poly-eq/stat-poly-eq-3.svg | 12 tests/testthat/_snaps/stat-poly-eq/stat-poly-eq-4.svg | 14 tests/testthat/_snaps/stat-poly-eq/stat-poly-eq-7.svg | 12 tests/testthat/_snaps/stat-poly-eq/stat-poly-eq-8.svg | 14 tests/testthat/_snaps/stat-poly-eq/stat-poly-eq-n3.svg | 12 tests/testthat/_snaps/stat-poly-eq/stat-poly-eq-n4.svg | 14 tests/testthat/_snaps/stat-poly-eq/stat-poly-eq-n7.svg | 12 tests/testthat/_snaps/stat-poly-eq/stat-poly-eq-n8.svg | 14 tests/testthat/_snaps/stat-quant-eq/stat-quant-eq-3.svg | 56 - tests/testthat/_snaps/stat-quant-eq/stat-quant-eq-4.svg | 62 - tests/testthat/_snaps/stat-quant-eq/stat-quant-eq-7.svg | 56 - tests/testthat/_snaps/stat-quant-eq/stat-quant-eq-8.svg | 62 - tests/testthat/_snaps/stat-quant-eq/stat-quant-eq-n3.svg | 56 - tests/testthat/_snaps/stat-quant-eq/stat-quant-eq-n4.svg | 62 - tests/testthat/_snaps/stat-quant-eq/stat-quant-eq-n7.svg | 56 - tests/testthat/_snaps/stat-quant-eq/stat-quant-eq-n8.svg | 62 - tests/testthat/_snaps/stat-valleys/stat-valleys-date-02.svg | 10 tests/testthat/_snaps/stat-valleys/stat-valleys-date-03.svg | 10 tests/testthat/_snaps/stat-valleys/stat-valleys-date-04.svg | 50 - tests/testthat/_snaps/stat-valleys/stat-valleys-date-05.svg | 60 - tests/testthat/_snaps/stat-valleys/stat-valleys-datetime-02.svg | 10 tests/testthat/_snaps/stat-valleys/stat-valleys-datetime-03.svg | 10 tests/testthat/_snaps/stat-valleys/stat-valleys-datetime-04.svg | 50 - tests/testthat/_snaps/stat-valleys/stat-valleys-datetime-05.svg | 60 - tests/testthat/_snaps/stat-valleys/stat-valleys-numeric-02.svg | 10 tests/testthat/_snaps/stat-valleys/stat-valleys-numeric-03.svg | 10 tests/testthat/_snaps/stat-valleys/stat-valleys-numeric-04.svg | 60 - tests/testthat/test-stat-broom.R | 3 79 files changed, 1408 insertions(+), 1314 deletions(-)
Title: A 'shiny' App to Compare Two Data Frames
Description: A tool developed with the 'Golem' framework which provides
an easier way to check cells differences between two data
frames. The user provides two data frames for comparison,
selects IDs variables identifying each row of input data,
then clicks a button to perform the comparison. Several
'R' package functions are used to describe the data
and perform the comparison in the server of the
application. The main ones are comparedf() from 'arsenal'
and skim() from 'skimr'. For more details see the
description of comparedf() from the 'arsenal' package and
that of skim() from the 'skimr' package.
Author: Sergio Ewane Ebouele [aut, cre]
Maintainer: Sergio Ewane Ebouele <info@dataforknow.com>
Diff between dataCompare versions 1.0.2 dated 2024-11-11 and 1.0.3 dated 2024-11-14
dataCompare-1.0.2/dataCompare/inst/app/template |only dataCompare-1.0.2/dataCompare/inst/app/www/Comparison_report.html |only dataCompare-1.0.3/dataCompare/DESCRIPTION | 6 dataCompare-1.0.3/dataCompare/MD5 | 16 - dataCompare-1.0.3/dataCompare/NEWS.md | 5 dataCompare-1.0.3/dataCompare/R/mod_comp_report.R | 84 +++++----- dataCompare-1.0.3/dataCompare/README.md | 8 dataCompare-1.0.3/dataCompare/inst/app/www/Comparison_report.Rmd | 5 dataCompare-1.0.3/dataCompare/inst/app/www/printer.png |only dataCompare-1.0.3/dataCompare/inst/app/www/report.png |only dataCompare-1.0.3/dataCompare/inst/doc/dataCompare.html | 44 ++--- 11 files changed, 93 insertions(+), 75 deletions(-)
Title: 'C++' Standard Template Library Containers
Description: Use 'C++' Standard Template Library containers interactively in R. Includes sets, unordered sets, multisets, unordered multisets, maps,
unordered maps, multimaps, unordered multimaps, stacks, queues, priority queues, vectors, deques, forward lists, and lists.
Author: Christian Dueben [aut, cre]
Maintainer: Christian Dueben <cdueben.ml+cran@proton.me>
Diff between cppcontainers versions 1.0.0 dated 2024-11-13 and 1.0.1 dated 2024-11-14
DESCRIPTION | 6 +- MD5 | 4 - tests/testthat/test-print.R | 122 ++++++++++++++++++++++---------------------- 3 files changed, 67 insertions(+), 65 deletions(-)
Title: Inference Based on Non-Probability Samples
Description: Statistical inference with non-probability samples when auxiliary information from external sources such as probability samples or population totals or means is available. Details can be found in: Wu et al. (2020) <doi:10.1080/01621459.2019.1677241>, Kim et al. (2021) <doi:10.1111/rssa.12696>, Wu et al. (2023) <https://www150.statcan.gc.ca/n1/pub/12-001-x/2022002/article/00002-eng.htm>, Kim et al. (2021) <https://www150.statcan.gc.ca/n1/pub/12-001-x/2021001/article/00004-eng.htm>, Kim et al. (2020) <doi:10.1111/rssb.12354>.
Author: Lukasz Chrostowski [aut, cre],
Maciej Beresewicz [aut, ctb] ,
Piotr Chlebicki [aut, ctb]
Maintainer: Lukasz Chrostowski <lukchr@st.amu.edu.pl>
Diff between nonprobsvy versions 0.1.0 dated 2024-04-04 and 0.1.1 dated 2024-11-14
nonprobsvy-0.1.0/nonprobsvy/build/nonprobsvy.pdf |only nonprobsvy-0.1.1/nonprobsvy/DESCRIPTION | 12 nonprobsvy-0.1.1/nonprobsvy/MD5 | 71 nonprobsvy-0.1.1/nonprobsvy/NAMESPACE | 2 nonprobsvy-0.1.1/nonprobsvy/NEWS.md | 23 nonprobsvy-0.1.1/nonprobsvy/R/bias_correction_ipw.R | 30 nonprobsvy-0.1.1/nonprobsvy/R/boot_mi.R | 5 nonprobsvy-0.1.1/nonprobsvy/R/control_inference.R | 14 nonprobsvy-0.1.1/nonprobsvy/R/control_outcome.R | 4 nonprobsvy-0.1.1/nonprobsvy/R/control_selection.R | 16 nonprobsvy-0.1.1/nonprobsvy/R/data_manip.R | 25 nonprobsvy-0.1.1/nonprobsvy/R/gee_ipw.R | 6 nonprobsvy-0.1.1/nonprobsvy/R/glm.R | 9 nonprobsvy-0.1.1/nonprobsvy/R/internals.R | 31 nonprobsvy-0.1.1/nonprobsvy/R/main_function_documentation.R | 74 nonprobsvy-0.1.1/nonprobsvy/R/nn.R | 53 nonprobsvy-0.1.1/nonprobsvy/R/nonprobDR.R | 103 nonprobsvy-0.1.1/nonprobsvy/R/nonprobIPW.R | 33 nonprobsvy-0.1.1/nonprobsvy/R/nonprobMI.R | 31 nonprobsvy-0.1.1/nonprobsvy/R/pmm.R | 36 nonprobsvy-0.1.1/nonprobsvy/R/prints.R | 5 nonprobsvy-0.1.1/nonprobsvy/R/summary.R | 9 nonprobsvy-0.1.1/nonprobsvy/R/theta_funcs.R | 13 nonprobsvy-0.1.1/nonprobsvy/R/varianceIPW.R | 1 nonprobsvy-0.1.1/nonprobsvy/R/varianceMI.R | 19 nonprobsvy-0.1.1/nonprobsvy/README.md | 31 nonprobsvy-0.1.1/nonprobsvy/build/stage23.rdb |binary nonprobsvy-0.1.1/nonprobsvy/inst/tinytest/test-2-ipw-totals.R | 3213 ++++------ nonprobsvy-0.1.1/nonprobsvy/inst/tinytest/test-3-mi-totals.R |only nonprobsvy-0.1.1/nonprobsvy/inst/tinytest/test-4-dr-totals.R |only nonprobsvy-0.1.1/nonprobsvy/inst/tinytest/test_methods.R | 408 - nonprobsvy-0.1.1/nonprobsvy/inst/tinytest/test_nonprobsvy.R | 454 - nonprobsvy-0.1.1/nonprobsvy/inst/tinytest/test_nonprobsvy_main.R | 494 + nonprobsvy-0.1.1/nonprobsvy/man/controlInf.Rd | 8 nonprobsvy-0.1.1/nonprobsvy/man/controlOut.Rd | 4 nonprobsvy-0.1.1/nonprobsvy/man/controlSel.Rd | 11 nonprobsvy-0.1.1/nonprobsvy/man/nonprob.Rd | 74 nonprobsvy-0.1.1/nonprobsvy/man/summary.nonprobsvy.Rd | 2 38 files changed, 3009 insertions(+), 2315 deletions(-)
Title: A 'ggplot2' Extension for Consistent Axis Alignment
Description: A 'ggplot2' extension offers various tools for organizing and arranging plots.
It is designed to consistently align a specific axis across multiple 'ggplot' objects,
making it especially useful for plots requiring data order manipulation. A typical use
case includes organizing combinations like a dendrogram and a heatmap.
Author: Yun Peng [aut, cre]
Maintainer: Yun Peng <yunyunp96@163.com>
Diff between ggalign versions 0.0.4 dated 2024-10-12 and 0.0.5 dated 2024-11-14
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Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-08-20 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-10-31 0.1.1
2024-10-30 0.1.0
2024-10-10 0.0.5
Title: Toolkit for HLA Immunogenomics
Description: A toolkit for the analysis and management of data for genes in the so-called "Human Leukocyte Antigen" (HLA) region. Functions extract reference data from the Anthony Nolan HLA Informatics Group/ImmunoGeneTics HLA 'GitHub' repository (ANHIG/IMGTHLA) <https://github.com/ANHIG/IMGTHLA>, validate Genotype List (GL) Strings, convert between UNIFORMAT and GL String Code (GLSC) formats, translate HLA alleles and GLSCs across ImmunoPolymorphism Database (IPD) IMGT/HLA Database release versions, identify differences between pairs of alleles at a locus, generate customized, multi-position sequence alignments, trim and convert allele-names across nomenclature epochs, and extend existing data-analysis methods.
Author: Livia Tran [aut],
Ryan Nickens [aut],
Leamon Crooms IV [aut],
Derek Pappas [aut],
Vinh Luu [ctb],
Josh Bredeweg [ctb],
Steven Mack [aut, cre]
Maintainer: Steven Mack <Steven.Mack@ucsf.edu>
Diff between HLAtools versions 1.2.0 dated 2024-09-02 and 1.3.0 dated 2024-11-14
DESCRIPTION | 6 MD5 | 45 ++-- NAMESPACE | 1 NEWS.md | 10 + R/GIANT.R | 2 R/accessoryFunctions.R | 42 ++++ R/atlasMaker.R | 2 R/buildAlignments.R | 18 - R/data.R | 2 R/locusValidator.R | 16 - README.md | 19 + data/HLAatlas.rda |binary data/HLAgazeteer.rda |binary data/alleleListHistory.rda |binary data/fragmentFeatureNames.rda |binary inst/doc/HLAtools.Rmd | 406 +++++++++++++++++++++--------------------- inst/doc/HLAtools.html | 166 +++++++---------- man/GIANT.Rd | 2 man/buildAlignments.Rd | 2 man/fragmentFeatureNames.Rd | 2 man/multiQueryRelease.Rd |only man/queryRelease.Rd | 4 man/validateLocus.Rd | 6 vignettes/HLAtools.Rmd | 406 +++++++++++++++++++++--------------------- 24 files changed, 605 insertions(+), 552 deletions(-)