Thu, 14 Nov 2024

Package lpcde updated to version 0.1.5 with previous version 0.1.4 dated 2024-04-10

Title: Boundary Adaptive Local Polynomial Conditional Density Estimator
Description: Tools for estimation and inference of conditional densities, derivatives and functions. This is the companion software for Cattaneo, Chandak, Jansson and Ma (2024) <doi:10.3150/23-BEJ1711>.
Author: Rajita Chandak [aut, cre]
Maintainer: Rajita Chandak <rajita.chandak@epfl.ch>

Diff between lpcde versions 0.1.4 dated 2024-04-10 and 0.1.5 dated 2024-11-14

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Package curl updated to version 6.0.1 with previous version 6.0.0 dated 2024-11-05

Title: A Modern and Flexible Web Client for R
Description: Bindings to 'libcurl' <https://curl.se/libcurl/> for performing fully configurable HTTP/FTP requests where responses can be processed in memory, on disk, or streaming via the callback or connection interfaces. Some knowledge of 'libcurl' is recommended; for a more-user-friendly web client see the 'httr2' package which builds on this package with http specific tools and logic.
Author: Jeroen Ooms [aut, cre] , Hadley Wickham [ctb], Posit Software, PBC [cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>

Diff between curl versions 6.0.0 dated 2024-11-05 and 6.0.1 dated 2024-11-14

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Package chillR updated to version 0.76 with previous version 0.75 dated 2023-11-27

Title: Statistical Methods for Phenology Analysis in Temperate Fruit Trees
Description: The phenology of plants (i.e. the timing of their annual life phases) depends on climatic cues. For temperate trees and many other plants, spring phases, such as leaf emergence and flowering, have been found to result from the effects of both cool (chilling) conditions and heat. Fruit tree scientists (pomologists) have developed some metrics to quantify chilling and heat (e.g. see Luedeling (2012) <doi:10.1016/j.scienta.2012.07.011>). 'chillR' contains functions for processing temperature records into chilling (Chilling Hours, Utah Chill Units and Chill Portions) and heat units (Growing Degree Hours). Regarding chilling metrics, Chill Portions are often considered the most promising, but they are difficult to calculate. This package makes it easy. 'chillR' also contains procedures for conducting a PLS analysis relating phenological dates (e.g. bloom dates) to either mean temperatures or mean chill and heat accumulation rates, based on long-term weather and phenology records (Lued [...truncated...]
Author: Eike Luedeling [aut, cre] , Lars Caspersen [aut] , Eduardo Fernandez [aut]
Maintainer: Eike Luedeling <eike@eikeluedeling.com>

Diff between chillR versions 0.75 dated 2023-11-27 and 0.76 dated 2024-11-14

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Package phytoclass updated to version 2.0.0 with previous version 1.2.0 dated 2024-05-11

Title: Estimate Chla Concentrations of Phytoplankton Groups
Description: Determine the chlorophyll a (Chl a) concentrations of different phytoplankton groups based on their pigment biomarkers. The method uses non-negative matrix factorisation and simulated annealing to minimise error between the observed and estimated values of pigment concentrations (Hayward et al. (2023) <doi:10.1002/lom3.10541>). The approach is similar to the widely used 'CHEMTAX' program (Mackey et al. 1996) <doi:10.3354/meps144265>, but is more straightforward, accurate, and not reliant on initial guesses for the pigment to Chl a ratios for phytoplankton groups.
Author: Alexander Hayward [aut, cre, cph], Tylar Murray [aut], Andy McKenzie [aut]
Maintainer: Alexander Hayward <phytoclass@outlook.com>

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Package mirt updated to version 1.43 with previous version 1.42 dated 2024-07-14

Title: Multidimensional Item Response Theory
Description: Analysis of discrete response data using unidimensional and multidimensional item analysis models under the Item Response Theory paradigm (Chalmers (2012) <doi:10.18637/jss.v048.i06>). Exploratory and confirmatory item factor analysis models are estimated with quadrature (EM) or stochastic (MHRM) methods. Confirmatory bi-factor and two-tier models are available for modeling item testlets using dimension reduction EM algorithms, while multiple group analyses and mixed effects designs are included for detecting differential item, bundle, and test functioning, and for modeling item and person covariates. Finally, latent class models such as the DINA, DINO, multidimensional latent class, mixture IRT models, and zero-inflated response models are supported.
Author: Phil Chalmers [aut, cre] , Joshua Pritikin [ctb], Alexander Robitzsch [ctb], Mateusz Zoltak [ctb], KwonHyun Kim [ctb], Carl F. Falk [ctb], Adam Meade [ctb], Lennart Schneider [ctb], David King [ctb], Chen-Wei Liu [ctb], Ogreden Oguzhan [ctb]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>

Diff between mirt versions 1.42 dated 2024-07-14 and 1.43 dated 2024-11-14

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Package maq updated to version 0.5.0 with previous version 0.4.0 dated 2024-04-18

Title: Multi-Armed Qini
Description: Policy evaluation using generalized Qini curves: Evaluate data-driven treatment targeting rules for one or more treatment arms over different budget constraints in experimental or observational settings under unconfoundedness.
Author: Erik Sverdrup [aut, cre], Han Wu [aut], Susan Athey [aut], Stefan Wager [aut]
Maintainer: Erik Sverdrup <erik.sverdrup@monash.edu>

Diff between maq versions 0.4.0 dated 2024-04-18 and 0.5.0 dated 2024-11-14

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Package LearnNonparam updated to version 1.2.5 with previous version 1.2.4 dated 2024-11-12

Title: 'R6'-Based Flexible Framework for Permutation Tests
Description: Implements non-parametric tests from Higgins (2004, ISBN:0534387756), including tests for one sample, two samples, k samples, paired comparisons, blocked designs, trends and association. Built with 'Rcpp' for efficiency and 'R6' for flexible, object-oriented design, the package provides a unified framework for performing or creating custom permutation tests.
Author: Yan Du [aut, cre]
Maintainer: Yan Du <isduyan@outlook.com>

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Package ggpmisc updated to version 0.6.1 with previous version 0.6.0 dated 2024-06-27

Title: Miscellaneous Extensions to 'ggplot2'
Description: Extensions to 'ggplot2' respecting the grammar of graphics paradigm. Statistics: locate and tag peaks and valleys; label plot with the equation of a fitted polynomial or other types of models; labels with P-value, R^2 or adjusted R^2 or information criteria for fitted models; label with ANOVA table for fitted models; label with summary for fitted models. Model fit classes for which suitable methods are provided by package 'broom' and 'broom.mixed' are supported. Scales and stats to build volcano and quadrant plots based on outcomes, fold changes, p-values and false discovery rates.
Author: Pedro J. Aphalo [aut, cre] , Kamil Slowikowski [ctb] , Samer Mouksassi [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>

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Package dataCompare updated to version 1.0.3 with previous version 1.0.2 dated 2024-11-11

Title: A 'shiny' App to Compare Two Data Frames
Description: A tool developed with the 'Golem' framework which provides an easier way to check cells differences between two data frames. The user provides two data frames for comparison, selects IDs variables identifying each row of input data, then clicks a button to perform the comparison. Several 'R' package functions are used to describe the data and perform the comparison in the server of the application. The main ones are comparedf() from 'arsenal' and skim() from 'skimr'. For more details see the description of comparedf() from the 'arsenal' package and that of skim() from the 'skimr' package.
Author: Sergio Ewane Ebouele [aut, cre]
Maintainer: Sergio Ewane Ebouele <info@dataforknow.com>

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Package cppcontainers updated to version 1.0.1 with previous version 1.0.0 dated 2024-11-13

Title: 'C++' Standard Template Library Containers
Description: Use 'C++' Standard Template Library containers interactively in R. Includes sets, unordered sets, multisets, unordered multisets, maps, unordered maps, multimaps, unordered multimaps, stacks, queues, priority queues, vectors, deques, forward lists, and lists.
Author: Christian Dueben [aut, cre]
Maintainer: Christian Dueben <cdueben.ml+cran@proton.me>

Diff between cppcontainers versions 1.0.0 dated 2024-11-13 and 1.0.1 dated 2024-11-14

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Package nonprobsvy updated to version 0.1.1 with previous version 0.1.0 dated 2024-04-04

Title: Inference Based on Non-Probability Samples
Description: Statistical inference with non-probability samples when auxiliary information from external sources such as probability samples or population totals or means is available. Details can be found in: Wu et al. (2020) <doi:10.1080/01621459.2019.1677241>, Kim et al. (2021) <doi:10.1111/rssa.12696>, Wu et al. (2023) <https://www150.statcan.gc.ca/n1/pub/12-001-x/2022002/article/00002-eng.htm>, Kim et al. (2021) <https://www150.statcan.gc.ca/n1/pub/12-001-x/2021001/article/00004-eng.htm>, Kim et al. (2020) <doi:10.1111/rssb.12354>.
Author: Lukasz Chrostowski [aut, cre], Maciej Beresewicz [aut, ctb] , Piotr Chlebicki [aut, ctb]
Maintainer: Lukasz Chrostowski <lukchr@st.amu.edu.pl>

Diff between nonprobsvy versions 0.1.0 dated 2024-04-04 and 0.1.1 dated 2024-11-14

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More information about nonprobsvy at CRAN
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Package ggalign updated to version 0.0.5 with previous version 0.0.4 dated 2024-10-12

Title: A 'ggplot2' Extension for Consistent Axis Alignment
Description: A 'ggplot2' extension offers various tools for organizing and arranging plots. It is designed to consistently align a specific axis across multiple 'ggplot' objects, making it especially useful for plots requiring data order manipulation. A typical use case includes organizing combinations like a dendrogram and a heatmap.
Author: Yun Peng [aut, cre]
Maintainer: Yun Peng <yunyunp96@163.com>

Diff between ggalign versions 0.0.4 dated 2024-10-12 and 0.0.5 dated 2024-11-14

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New package autometric with initial version 0.1.1
Package: autometric
Title: Background Resource Logging
Description: Intense parallel workloads can be difficult to monitor. Packages 'crew.cluster', 'clustermq', and 'future.batchtools' distribute hundreds of worker processes over multiple computers. If a worker process exhausts its available memory, it may terminate silently, leaving the underlying problem difficult to detect or troubleshoot. Using the 'autometric' package, a worker can proactively monitor itself in a detached background thread. The worker process itself runs normally, and the thread writes to a log every few seconds. If the worker terminates unexpectedly, 'autometric' can read and visualize the log file to reveal potential resource-related reasons for the crash. The 'autometric' package borrows heavily from the methods of packages 'ps' <doi:10.32614/CRAN.package.ps> and 'psutil'.
Version: 0.1.1
License: MIT + file LICENSE
URL: https://wlandau.github.io/autometric/, https://github.com/wlandau/autometric
BugReports: https://github.com/wlandau/autometric/issues
Depends: R (>= 3.5.0)
Imports: graphics, utils
Suggests: grDevices, ps, tinytest
Encoding: UTF-8
Language: en-US
NeedsCompilation: yes
Packaged: 2024-10-31 19:33:31 UTC; C240390
Author: William Michael Landau [aut, cre] , Eli Lilly and Company [cph, fnd], Posit Software, PBC [cph] , Jay Loden [cph] , Dave Daeschler [cph] , Giampaolo Rodola [cph]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Repository: CRAN
Date/Publication: 2024-10-31 23:10:02 UTC

More information about autometric at CRAN
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Package iClusterVB (with last version 0.1.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2024-08-20 0.1.2

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Package autometric (with last version 0.1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2024-10-31 0.1.1
2024-10-30 0.1.0
2024-10-10 0.0.5

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Package HLAtools updated to version 1.3.0 with previous version 1.2.0 dated 2024-09-02

Title: Toolkit for HLA Immunogenomics
Description: A toolkit for the analysis and management of data for genes in the so-called "Human Leukocyte Antigen" (HLA) region. Functions extract reference data from the Anthony Nolan HLA Informatics Group/ImmunoGeneTics HLA 'GitHub' repository (ANHIG/IMGTHLA) <https://github.com/ANHIG/IMGTHLA>, validate Genotype List (GL) Strings, convert between UNIFORMAT and GL String Code (GLSC) formats, translate HLA alleles and GLSCs across ImmunoPolymorphism Database (IPD) IMGT/HLA Database release versions, identify differences between pairs of alleles at a locus, generate customized, multi-position sequence alignments, trim and convert allele-names across nomenclature epochs, and extend existing data-analysis methods.
Author: Livia Tran [aut], Ryan Nickens [aut], Leamon Crooms IV [aut], Derek Pappas [aut], Vinh Luu [ctb], Josh Bredeweg [ctb], Steven Mack [aut, cre]
Maintainer: Steven Mack <Steven.Mack@ucsf.edu>

Diff between HLAtools versions 1.2.0 dated 2024-09-02 and 1.3.0 dated 2024-11-14

 DESCRIPTION                   |    6 
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 NAMESPACE                     |    1 
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 man/validateLocus.Rd          |    6 
 vignettes/HLAtools.Rmd        |  406 +++++++++++++++++++++---------------------
 24 files changed, 605 insertions(+), 552 deletions(-)

More information about HLAtools at CRAN
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