Title: Reliability Growth Analysis
Description: Modeling and plotting functions for Reliability Growth Analysis (RGA). Models include the Duane (1962) <doi:10.1109/TA.1964.4319640>, Non-Homogeneous Poisson Process (NHPP) by Crow (1975) <https://apps.dtic.mil/sti/citations/ADA020296>, Piecewise Weibull NHPP by Guo et al. (2010) <doi:10.1109/RAMS.2010.5448029>, and Piecewise Weibull NHPP with Change Point Detection based on the 'segmented' package by Muggeo (2024) <https://cran.r-project.org/package=segmented>.
Author: Paul Govan [aut, cre, cph]
Maintainer: Paul Govan <paul.govan2@gmail.com>
Diff between ReliaGrowR versions 0.1.1 dated 2024-11-01 and 0.1.3 dated 2024-11-15
DESCRIPTION | 6 +- MD5 | 18 +++--- NAMESPACE | 2 NEWS.md | 12 ++++ R/duane_plot.R | 25 +++++---- R/rga.R | 123 +++++++++++++++++++++------------------------- inst/WORDLIST | 9 ++- man/duane_plot.Rd | 3 + tests/testthat/Rplots.pdf |binary tests/testthat/test-rga.R | 22 ++++---- 10 files changed, 120 insertions(+), 100 deletions(-)
Title: Wrapper for 'Visa Chart Components'
Description: Provides a set of wrapper functions for 'Visa Chart Components'.
'Visa Chart Components' <https://github.com/visa/visa-chart-components> is an accessibility focused,
framework agnostic set of data experience design systems components for the web.
Author: Christopher DeMartini [aut, cre],
Stephanie Modica [aut],
David Kutas [aut],
Jaime Tanner [aut],
Frank Elavsky [aut],
Wojtek Kostelecki [ctb],
Visa Data Experience Team [aut, fnd],
Visa, Inc. [cph]
Maintainer: Christopher DeMartini <chris.demartini.npm@gmail.com>
Diff between visachartR versions 3.3.0 dated 2024-03-16 and 4.0.1 dated 2024-11-15
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Title: Likelihood Based Inference
Description: Maximum likelihood estimation and likelihood ratio test are essential for modern statistics. This package supports in calculating likelihood based inference.
Reference: Pawitan Y. (2001, ISBN:0-19-850765-8).
Author: Kyun-Seop Bae [aut, cre, cph]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between LBI versions 0.2.0 dated 2024-10-16 and 0.2.1 dated 2024-11-15
DESCRIPTION | 6 +++--- MD5 | 37 ++++++++++++++++++++----------------- R/LBCIvar.R | 31 ++++++++++++++----------------- R/LIbin.R | 4 ++-- R/LInorm.R | 16 +++++++++++----- R/LInormVar.R | 22 ++++++++++++---------- R/LIpois.R | 35 ++++++++++++++++++++++++++--------- R/LIvRatio.R |only R/LIvar.R | 35 ++++++++++++++++------------------- R/LIvtest.R | 29 ++++++++++------------------- inst/NEWS.Rd | 10 ++++++++++ inst/doc |only man/LBCIvar.Rd | 2 +- man/LBI-package.Rd | 2 +- man/LIbin.Rd | 2 +- man/LInorm.Rd | 4 ++-- man/LInormVar.Rd | 2 +- man/LIpois.Rd | 21 ++++++++++++++------- man/LIvRatio.Rd |only man/LIvar.Rd | 29 ++++++++++++----------------- man/LIvtest.Rd | 14 ++++++-------- 21 files changed, 162 insertions(+), 139 deletions(-)
Title: Group Sequential Design with Non-Constant Effect
Description: The goal of 'gsDesign2' is to enable fixed or group sequential
design under non-proportional hazards. To enable highly flexible enrollment,
time-to-event and time-to-dropout assumptions, 'gsDesign2' offers piecewise
constant enrollment, failure rates, and dropout rates for a stratified
population. This package includes three methods for designs:
average hazard ratio, weighted logrank tests in Yung and Liu (2019)
<doi:10.1111/biom.13196>, and MaxCombo tests.
Substantial flexibility on top of what is in the 'gsDesign' package
is intended for selecting boundaries.
Author: Keaven Anderson [aut],
Yilong Zhang [aut],
Yujie Zhao [aut, cre],
Jianxiao Yang [aut],
Nan Xiao [aut],
Amin Shirazi [ctb],
Ruixue Wang [ctb],
Yi Cui [ctb],
Ping Yang [ctb],
Xin Tong Li [ctb],
Chenxiang Li [ctb],
Hiroaki Fukuda [ctb],
Hongtao Zhang [c [...truncated...]
Maintainer: Yujie Zhao <yujie.zhao@merck.com>
Diff between gsDesign2 versions 1.1.2 dated 2024-04-09 and 1.1.3 dated 2024-11-15
gsDesign2-1.1.2/gsDesign2/tests/testthat/helper-ahr.R |only gsDesign2-1.1.2/gsDesign2/tests/testthat/helper-expected_accrual.R |only gsDesign2-1.1.2/gsDesign2/tests/testthat/helper-expected_event.R |only gsDesign2-1.1.2/gsDesign2/tests/testthat/helper-expected_time.R |only gsDesign2-1.1.2/gsDesign2/tests/testthat/helper-fixed_design.R |only gsDesign2-1.1.2/gsDesign2/tests/testthat/helper-gs_design_combo.R |only gsDesign2-1.1.2/gsDesign2/tests/testthat/helper-gs_design_npe.R |only gsDesign2-1.1.2/gsDesign2/tests/testthat/helper-gs_info_ahr.R |only gsDesign2-1.1.2/gsDesign2/tests/testthat/helper-gs_info_combo.R |only gsDesign2-1.1.2/gsDesign2/tests/testthat/helper-gs_power_ahr.R |only gsDesign2-1.1.2/gsDesign2/tests/testthat/helper-gs_power_combo.R |only gsDesign2-1.1.2/gsDesign2/tests/testthat/helper-ppwe.R |only gsDesign2-1.1.2/gsDesign2/tests/testthat/helper-reference-AHR.R |only gsDesign2-1.1.2/gsDesign2/tests/testthat/helper-reference-eAccrual.R |only gsDesign2-1.1.2/gsDesign2/tests/testthat/helper-reference-eEvents.R |only gsDesign2-1.1.2/gsDesign2/tests/testthat/helper-reference-eEvents_df.R |only gsDesign2-1.1.2/gsDesign2/tests/testthat/helper-reference-gridpts_h1_hupdate.R |only gsDesign2-1.1.2/gsDesign2/tests/testthat/helper-reference-gs_design_ahr.R |only gsDesign2-1.1.2/gsDesign2/tests/testthat/helper-reference-gs_design_npe.R |only gsDesign2-1.1.2/gsDesign2/tests/testthat/helper-reference-gs_info_ahr.R |only gsDesign2-1.1.2/gsDesign2/tests/testthat/helper-reference-gs_power_ahr.R |only gsDesign2-1.1.2/gsDesign2/tests/testthat/helper-reference-gs_power_npe.R |only gsDesign2-1.1.2/gsDesign2/tests/testthat/helper-reference-tEvents.R |only gsDesign2-1.1.2/gsDesign2/tests/testthat/helper-utility_combo.R |only gsDesign2-1.1.2/gsDesign2/tests/testthat/test-double_programming_ppwe.R |only gsDesign2-1.1.2/gsDesign2/tests/testthat/test-fastlag.R |only gsDesign2-1.1.3/gsDesign2/DESCRIPTION | 11 gsDesign2-1.1.3/gsDesign2/MD5 | 242 +- gsDesign2-1.1.3/gsDesign2/NAMESPACE | 7 gsDesign2-1.1.3/gsDesign2/NEWS.md | 51 gsDesign2-1.1.3/gsDesign2/R/ahr.R | 31 gsDesign2-1.1.3/gsDesign2/R/ahr_blinded.R | 37 gsDesign2-1.1.3/gsDesign2/R/as_gt.R | 554 +---- gsDesign2-1.1.3/gsDesign2/R/as_rtf.R | 563 ----- gsDesign2-1.1.3/gsDesign2/R/check_arg.R | 2 gsDesign2-1.1.3/gsDesign2/R/define.R | 4 gsDesign2-1.1.3/gsDesign2/R/expected_accural.R | 4 gsDesign2-1.1.3/gsDesign2/R/expected_time.R | 6 gsDesign2-1.1.3/gsDesign2/R/fixed_design_ahr.R | 6 gsDesign2-1.1.3/gsDesign2/R/fixed_design_fh.R | 6 gsDesign2-1.1.3/gsDesign2/R/fixed_design_lf.R | 4 gsDesign2-1.1.3/gsDesign2/R/fixed_design_maxcombo.R | 14 gsDesign2-1.1.3/gsDesign2/R/fixed_design_mb.R | 21 gsDesign2-1.1.3/gsDesign2/R/fixed_design_milestone.R | 2 gsDesign2-1.1.3/gsDesign2/R/fixed_design_rd.R | 12 gsDesign2-1.1.3/gsDesign2/R/fixed_design_rmst.R | 2 gsDesign2-1.1.3/gsDesign2/R/globals.R | 4 gsDesign2-1.1.3/gsDesign2/R/gsDesign2-package.R | 16 gsDesign2-1.1.3/gsDesign2/R/gs_b.R | 13 gsDesign2-1.1.3/gsDesign2/R/gs_design_ahr.R | 24 gsDesign2-1.1.3/gsDesign2/R/gs_design_combo.R | 8 gsDesign2-1.1.3/gsDesign2/R/gs_design_npe.R | 5 gsDesign2-1.1.3/gsDesign2/R/gs_design_rd.R | 35 gsDesign2-1.1.3/gsDesign2/R/gs_design_wlr.R | 246 +- gsDesign2-1.1.3/gsDesign2/R/gs_info_ahr.R | 107 - gsDesign2-1.1.3/gsDesign2/R/gs_info_rd.R | 16 gsDesign2-1.1.3/gsDesign2/R/gs_info_wlr.R | 2 gsDesign2-1.1.3/gsDesign2/R/gs_power_ahr.R | 84 gsDesign2-1.1.3/gsDesign2/R/gs_power_combo.R | 10 gsDesign2-1.1.3/gsDesign2/R/gs_power_npe.R | 4 gsDesign2-1.1.3/gsDesign2/R/gs_power_rd.R | 10 gsDesign2-1.1.3/gsDesign2/R/gs_power_wlr.R | 43 gsDesign2-1.1.3/gsDesign2/R/gs_spending_bound.R | 3 gsDesign2-1.1.3/gsDesign2/R/gs_spending_combo.R | 76 gsDesign2-1.1.3/gsDesign2/R/gs_update_ahr.R | 453 ++-- gsDesign2-1.1.3/gsDesign2/R/pw_info.R | 149 - gsDesign2-1.1.3/gsDesign2/R/pwe.R | 7 gsDesign2-1.1.3/gsDesign2/R/rmst.R | 8 gsDesign2-1.1.3/gsDesign2/R/summary.R | 986 +-------- gsDesign2-1.1.3/gsDesign2/R/to_integer.R | 457 +++- gsDesign2-1.1.3/gsDesign2/R/utility_combo.R | 18 gsDesign2-1.1.3/gsDesign2/R/utility_tidy_tbl.R | 50 gsDesign2-1.1.3/gsDesign2/R/utility_wlr.R | 112 - gsDesign2-1.1.3/gsDesign2/R/utils.R |only gsDesign2-1.1.3/gsDesign2/R/wlr_weight.R | 8 gsDesign2-1.1.3/gsDesign2/inst/WORDLIST | 21 gsDesign2-1.1.3/gsDesign2/inst/doc/gsDesign2.html | 1047 +++++----- gsDesign2-1.1.3/gsDesign2/man/ahr.Rd | 12 gsDesign2-1.1.3/gsDesign2/man/ahr_blinded.Rd | 15 gsDesign2-1.1.3/gsDesign2/man/as_gt.Rd | 6 gsDesign2-1.1.3/gsDesign2/man/as_rtf.Rd | 20 gsDesign2-1.1.3/gsDesign2/man/fixed_design.Rd | 17 gsDesign2-1.1.3/gsDesign2/man/gs_b.Rd | 13 gsDesign2-1.1.3/gsDesign2/man/gs_create_arm.Rd | 8 gsDesign2-1.1.3/gsDesign2/man/gs_design_ahr.Rd | 9 gsDesign2-1.1.3/gsDesign2/man/gs_design_rd.Rd | 19 gsDesign2-1.1.3/gsDesign2/man/gs_design_wlr.Rd | 58 gsDesign2-1.1.3/gsDesign2/man/gs_info_ahr.Rd | 16 gsDesign2-1.1.3/gsDesign2/man/gs_power_ahr.Rd | 34 gsDesign2-1.1.3/gsDesign2/man/gs_power_combo.Rd | 2 gsDesign2-1.1.3/gsDesign2/man/gs_power_wlr.Rd | 16 gsDesign2-1.1.3/gsDesign2/man/gs_spending_combo.Rd | 75 gsDesign2-1.1.3/gsDesign2/man/gs_update_ahr.Rd | 122 - gsDesign2-1.1.3/gsDesign2/man/pw_info.Rd | 51 gsDesign2-1.1.3/gsDesign2/man/summary.Rd | 166 - gsDesign2-1.1.3/gsDesign2/man/to_integer.Rd | 126 + gsDesign2-1.1.3/gsDesign2/man/wlr_weight.Rd | 6 gsDesign2-1.1.3/gsDesign2/tests/testthat/_snaps/independent_as_gt.md | 306 +- gsDesign2-1.1.3/gsDesign2/tests/testthat/_snaps/independent_as_rtf |only gsDesign2-1.1.3/gsDesign2/tests/testthat/helper-developer-summary.R |only gsDesign2-1.1.3/gsDesign2/tests/testthat/helper-double-programming-expected_accrual.R |only gsDesign2-1.1.3/gsDesign2/tests/testthat/helper-double-programming-expected_event.R |only gsDesign2-1.1.3/gsDesign2/tests/testthat/helper-double-programming-expected_time.R |only gsDesign2-1.1.3/gsDesign2/tests/testthat/helper-double-programming-gs_design_combo.R |only gsDesign2-1.1.3/gsDesign2/tests/testthat/helper-double-programming-gs_info_ahr.R |only gsDesign2-1.1.3/gsDesign2/tests/testthat/helper-double-programming-ppwe.R |only gsDesign2-1.1.3/gsDesign2/tests/testthat/helper-old-version-AHR_.R |only gsDesign2-1.1.3/gsDesign2/tests/testthat/helper-old-version-eAccrual_.R |only gsDesign2-1.1.3/gsDesign2/tests/testthat/helper-old-version-eEvents_.R |only gsDesign2-1.1.3/gsDesign2/tests/testthat/helper-old-version-gridpts_h1_hupdate.R |only gsDesign2-1.1.3/gsDesign2/tests/testthat/helper-old-version-gs_design_ahr_.R |only gsDesign2-1.1.3/gsDesign2/tests/testthat/helper-old-version-gs_design_npe_.R |only gsDesign2-1.1.3/gsDesign2/tests/testthat/helper-old-version-gs_info_ahr_.R |only gsDesign2-1.1.3/gsDesign2/tests/testthat/helper-old-version-gs_power_ahr_.R |only gsDesign2-1.1.3/gsDesign2/tests/testthat/helper-old-version-gs_power_npe_.R |only gsDesign2-1.1.3/gsDesign2/tests/testthat/helper-old-version-tEvents_.R |only gsDesign2-1.1.3/gsDesign2/tests/testthat/helper-old_version-eEvents_df_.R |only gsDesign2-1.1.3/gsDesign2/tests/testthat/helper-support-as_rtf.R |only gsDesign2-1.1.3/gsDesign2/tests/testthat/helper.R | 10 gsDesign2-1.1.3/gsDesign2/tests/testthat/test-developer-ahr.R | 69 gsDesign2-1.1.3/gsDesign2/tests/testthat/test-developer-expected_time.R | 11 gsDesign2-1.1.3/gsDesign2/tests/testthat/test-developer-fastlag.R |only gsDesign2-1.1.3/gsDesign2/tests/testthat/test-developer-gs_design_ahr.R | 18 gsDesign2-1.1.3/gsDesign2/tests/testthat/test-developer-gs_design_wlr.R |only gsDesign2-1.1.3/gsDesign2/tests/testthat/test-developer-gs_power_ahr.R | 25 gsDesign2-1.1.3/gsDesign2/tests/testthat/test-developer-pw_info.R |only gsDesign2-1.1.3/gsDesign2/tests/testthat/test-developer-summary.R |only gsDesign2-1.1.3/gsDesign2/tests/testthat/test-developer-to_integer.R |only gsDesign2-1.1.3/gsDesign2/tests/testthat/test-independent-ahr.R | 30 gsDesign2-1.1.3/gsDesign2/tests/testthat/test-independent-ahr_blinded.R |only gsDesign2-1.1.3/gsDesign2/tests/testthat/test-independent-fixed_design.R | 56 gsDesign2-1.1.3/gsDesign2/tests/testthat/test-independent-gs_design_combo.R | 8 gsDesign2-1.1.3/gsDesign2/tests/testthat/test-independent-gs_design_npe.R | 12 gsDesign2-1.1.3/gsDesign2/tests/testthat/test-independent-gs_info_ahr.R | 6 gsDesign2-1.1.3/gsDesign2/tests/testthat/test-independent-gs_info_combo.R | 35 gsDesign2-1.1.3/gsDesign2/tests/testthat/test-independent-gs_power_ahr.R | 51 gsDesign2-1.1.3/gsDesign2/tests/testthat/test-independent-gs_power_combo.R | 81 gsDesign2-1.1.3/gsDesign2/tests/testthat/test-independent-gs_update_ahr.R |only gsDesign2-1.1.3/gsDesign2/tests/testthat/test-independent-utility_combo.R | 551 ++++- gsDesign2-1.1.3/gsDesign2/tests/testthat/test-independent-utility_tbl.R | 6 gsDesign2-1.1.3/gsDesign2/tests/testthat/test-independent_as_gt.R | 24 gsDesign2-1.1.3/gsDesign2/tests/testthat/test-independent_as_rtf.R |only gsDesign2-1.1.3/gsDesign2/tests/testthat/test-independent_ppwe.R |only gsDesign2-1.1.3/gsDesign2/tests/testthat/test-independent_test_gs_design_wlr.R | 4 144 files changed, 3848 insertions(+), 3847 deletions(-)
Title: Geometric Morphometric Analyses of 2D and 3D Landmark Data
Description: Read, manipulate, and digitize landmark data, generate shape
variables via Procrustes analysis for points, curves and surfaces, perform
shape analyses, and provide graphical depictions of shapes and patterns of
shape variation.
Author: Dean Adams [aut, cre],
Michael Collyer [aut],
Antigoni Kaliontzopoulou [aut],
Erica Baken [aut]
Maintainer: Dean Adams <dcadams@iastate.edu>
Diff between geomorph versions 4.0.8 dated 2024-06-24 and 4.0.9 dated 2024-11-15
DESCRIPTION | 8 +- MD5 | 44 +++++++----- NAMESPACE | 6 + NEWS.md | 17 ++++ R/extended.pgls.r |only R/geomorph.support.code.r | 18 +++++ R/geomorph.utils.r | 118 ++++++++++++++++++++++++++++++++ R/gm.measurement.error.R | 5 - R/gm.prcomp.R | 19 +++++ R/morphol.disparity.r | 3 R/physignal.eigen.R |only R/readland.fcsv.r | 15 +++- R/shared.support.code.R | 5 + data/pupfish.ws.rda |only inst/CITATION | 4 - inst/doc/geomorph.digitize3D.R | 10 +- inst/doc/geomorph.digitize3D.html | 14 +-- man/extended.pgls.Rd |only man/gm.measurement.error.Rd | 5 + man/gm.prcomp.Rd | 3 man/physignal.eigen.Rd |only man/plot.physignal.eigen.Rd |only man/print.physignal.eigen.Rd |only man/pupfish.ws.Rd |only man/readland.fcsv.Rd | 10 ++ man/summary.physignal.eigen.Rd |only tests/testthat/test-geomorph.R | 136 ++++++++++++++++++++++---------------- vignettes/cran-comments.md |only 28 files changed, 340 insertions(+), 100 deletions(-)
Title: Tools and Metrics for 3D Surfaces and Objects
Description: A collection of functions for sampling and simulating 3D surfaces and objects
and estimating metrics like rugosity, fractal dimension, convexity, sphericity, circularity,
second moments of area and volume, and more.
Author: Joshua Madin [aut] ,
Nina Schiettekatte [aut, cre]
Maintainer: Nina Schiettekatte <nina.schiettekatte@gmail.com>
Diff between habtools versions 1.0.5 dated 2024-03-01 and 1.0.7 dated 2024-11-15
DESCRIPTION | 8 - MD5 | 50 ++++++----- NAMESPACE | 1 NEWS.md |only R/dem_sample.R | 8 - R/fd_area.R | 2 R/fd_hvar.R | 4 R/fd_sd.R | 4 R/rg.R | 2 R/z.R |only README.md | 17 ++- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION |only inst/doc/DEM_intro.R | 4 inst/doc/DEM_intro.html | 148 +++++++++++++++++---------------- inst/doc/fractal_intro.R | 2 inst/doc/fractal_intro.html | 157 ++++++++++++++++++----------------- inst/doc/mesh_intro.R | 6 - inst/doc/mesh_intro.html | 158 +++++++++++++++++++----------------- man/dem_sample.Rd | 4 man/figures/README-example1-1.png |binary man/figures/README-example1-2.png |binary man/figures/README-example1-3.png |binary man/figures/README-example2-1.png |binary man/figures/README-example2-2.png |binary man/figures/README-setup2-1-rgl.png |binary man/z.Rd |only 28 files changed, 306 insertions(+), 269 deletions(-)
Title: Regression Data Analysis System
Description: Perform a supervised data analysis on a database through a 'shiny' graphical interface. It includes methods such as linear regression, penalized regression, k-nearest neighbors, decision trees, ada boosting, extreme gradient boosting, random forest, neural networks, deep learning and support vector machines.
Author: Oldemar Rodriguez [aut, cre],
Andres Navarro D. [ctb, prg],
Diego Jimenez A. [ctb, prg],
Ariel Arroyo S. [ctb, prg],
Joseline Quiros M. [ctb, prg]
Maintainer: Oldemar Rodriguez <oldemar.rodriguez@ucr.ac.cr>
Diff between regressoR versions 3.0.2 dated 2023-06-29 and 4.0.3 dated 2024-11-15
regressoR-3.0.2/regressoR/R/mod_boosting.R |only regressoR-3.0.2/regressoR/R/mod_boosting_fct.R |only regressoR-3.0.2/regressoR/R/mod_boosting_utils.R |only regressoR-3.0.2/regressoR/R/mod_comparacion.R |only regressoR-3.0.2/regressoR/R/mod_cross_validation.R |only regressoR-3.0.2/regressoR/R/mod_cv_boosting.R |only regressoR-3.0.2/regressoR/R/mod_cv_dt.R |only regressoR-3.0.2/regressoR/R/mod_cv_knn.R |only regressoR-3.0.2/regressoR/R/mod_cv_rd.R |only regressoR-3.0.2/regressoR/R/mod_cv_rf.R |only regressoR-3.0.2/regressoR/R/mod_cv_rl.R |only regressoR-3.0.2/regressoR/R/mod_cv_rlr.R |only regressoR-3.0.2/regressoR/R/mod_cv_svm.R |only regressoR-3.0.2/regressoR/R/mod_dimension_reduction.R |only regressoR-3.0.2/regressoR/R/mod_dimension_reduction_utils.R |only regressoR-3.0.2/regressoR/R/mod_knn.R |only regressoR-3.0.2/regressoR/R/mod_knn_utils.R |only regressoR-3.0.2/regressoR/R/mod_l_regression.R |only regressoR-3.0.2/regressoR/R/mod_l_regression_utils.R |only regressoR-3.0.2/regressoR/R/mod_neural_net.R |only regressoR-3.0.2/regressoR/R/mod_neural_net_utils.R |only regressoR-3.0.2/regressoR/R/mod_penalized_l_r.R |only regressoR-3.0.2/regressoR/R/mod_penalized_l_r_utils.R |only regressoR-3.0.2/regressoR/R/mod_r_forest.R |only regressoR-3.0.2/regressoR/R/mod_r_forest_fct.R |only regressoR-3.0.2/regressoR/R/mod_r_forest_utils.R |only regressoR-3.0.2/regressoR/R/mod_regression_trees.R |only regressoR-3.0.2/regressoR/R/mod_regression_trees_utils.R |only regressoR-3.0.2/regressoR/R/mod_svm.R |only regressoR-3.0.2/regressoR/man/app_server.Rd |only regressoR-3.0.2/regressoR/man/boosting_importance_plot.Rd |only regressoR-3.0.2/regressoR/man/calibrate_boosting.Rd |only regressoR-3.0.2/regressoR/man/coef_lambda.Rd |only regressoR-3.0.2/regressoR/man/datos.disyuntivos.Rd |only regressoR-3.0.2/regressoR/man/disp_models.Rd |only regressoR-3.0.2/regressoR/man/dt_plot.Rd |only regressoR-3.0.2/regressoR/man/e_coeff_landa.Rd |only regressoR-3.0.2/regressoR/man/general_indices.Rd |only regressoR-3.0.2/regressoR/man/importance_plot_rf.Rd |only regressoR-3.0.2/regressoR/man/nn_plot.Rd |only regressoR-3.0.2/regressoR/man/pairs_power.Rd |only regressoR-3.0.2/regressoR/man/plot_RMSE.Rd |only regressoR-3.0.2/regressoR/man/plot_pred_rd.Rd |only regressoR-3.0.2/regressoR/man/plot_var_pred_rd.Rd |only regressoR-3.0.2/regressoR/man/rd_model.Rd |only regressoR-3.0.2/regressoR/man/rd_prediction.Rd |only regressoR-3.0.2/regressoR/man/rd_type.Rd |only regressoR-3.0.2/regressoR/man/rl_coeff.Rd |only regressoR-3.0.2/regressoR/man/rlr_model.Rd |only regressoR-3.0.2/regressoR/man/rlr_prediction.Rd |only regressoR-3.0.2/regressoR/man/rlr_type.Rd |only regressoR-4.0.3/regressoR/DESCRIPTION | 33 regressoR-4.0.3/regressoR/MD5 | 117 -- regressoR-4.0.3/regressoR/NAMESPACE | 50 regressoR-4.0.3/regressoR/R/app_server.R | 203 +-- regressoR-4.0.3/regressoR/R/app_ui.R | 157 +- regressoR-4.0.3/regressoR/R/general_plots.R | 72 - 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Title: Bayesian Modeling and Causal Inference for Multivariate
Longitudinal Data
Description: Easy-to-use and efficient interface for
Bayesian inference of complex panel (time series) data using dynamic
multivariate panel models by Helske and Tikka (2024)
<doi:10.1016/j.alcr.2024.100617>. The package supports joint modeling of
multiple measurements per individual, time-varying and time-invariant
effects, and a wide range of discrete and continuous distributions.
Estimation of these dynamic multivariate panel models is carried out via
'Stan'. For an in-depth tutorial of the package, see
(Tikka and Helske, 2024) <doi:10.48550/arXiv.2302.01607>.
Author: Santtu Tikka [aut, cre] ,
Jouni Helske [aut] ,
Nicholas Clark [rev],
Lucy D'Agostino McGowan [rev]
Maintainer: Santtu Tikka <santtuth@gmail.com>
Diff between dynamite versions 1.5.2 dated 2024-05-28 and 1.5.5 dated 2024-11-15
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dynamite-1.5.5/dynamite/tests/testthat/test-recovery.R | 1198 +- dynamite-1.5.5/dynamite/tests/testthat/test-warnings.R | 36 dynamite-1.5.5/dynamite/vignettes/custommodelplot-1.png |only dynamite-1.5.5/dynamite/vignettes/dag.png |only dynamite-1.5.5/dynamite/vignettes/dynamite.bib |only dynamite-1.5.5/dynamite/vignettes/dynamite.qmd |only dynamite-1.5.5/dynamite/vignettes/dynamite_custom.qmd |only dynamite-1.5.5/dynamite/vignettes/dynamite_priors.qmd |only dynamite-1.5.5/dynamite/vignettes/dynamite_simulation.qmd |only dynamite-1.5.5/dynamite/vignettes/gaussianplot-1.png |only dynamite-1.5.5/dynamite/vignettes/nuplot-1.png |only dynamite-1.5.5/dynamite/vignettes/vbplot-1.png |only 132 files changed, 18286 insertions(+), 18364 deletions(-)
Title: Fast Alternatives to 'tidyverse' Functions
Description: A full set of fast data manipulation tools with a tidy
front-end and a fast back-end using 'collapse' and 'cheapr'.
Author: Nick Christofides [aut, cre]
Maintainer: Nick Christofides <nick.christofides.r@gmail.com>
Diff between fastplyr versions 0.3.0 dated 2024-10-20 and 0.4.0 dated 2024-11-15
DESCRIPTION | 6 MD5 | 67 +- NAMESPACE | 2 NEWS.md | 103 ++-- R/GRP_utils.R | 9 R/abc.R | 1 R/add_id.R | 17 R/cpp11.R | 28 - R/df_utils.R | 654 ++++++++++++++------------ R/f_bind.R | 337 +++++++------ R/f_count.R | 4 R/f_distinct.R | 4 R/f_duplicates.R | 4 R/f_expand.R | 6 R/f_fill.R |only R/f_group_by.R | 2 R/f_join.R | 16 R/f_nest_by.R | 9 R/f_rowwise.R | 2 R/f_select.R | 235 ++++----- R/f_slice.R | 856 +++++++++++++++++------------------ R/f_summarise.R | 58 +- R/f_tibble.R | 2 R/group_collapse.R | 57 ++ R/group_id.R | 649 +++++++++++++------------- R/tidy_quantiles.R | 586 ++++++++++++----------- R/tidy_utils.R | 632 ++++++++++++------------- README.md | 96 +-- man/f_fill.Rd |only man/f_select.Rd | 67 +- man/f_slice.Rd | 8 man/group_id.Rd | 3 src/cpp11.cpp | 80 +-- src/fastplyr.cpp | 393 ++++++++++++---- tests/testthat/test-f_summarise.R |only tests/testthat/test-tidy_quantiles.R | 62 ++ 36 files changed, 2783 insertions(+), 2272 deletions(-)
Title: Checks for Various Computing Environments
Description: A collection of lightweight functions that can be used to
determine the computing environment in which your code is running.
This includes operating systems, continuous integration (CI)
environments, containers, and more.
Author: Brian Connelly [aut, cre, cph]
,
Mark Padgham [ctb] ,
Lluis Revilla Sancho [ctb]
Maintainer: Brian Connelly <bdc@bconnelly.net>
Diff between ami versions 0.2.0 dated 2024-10-25 and 0.2.1 dated 2024-11-15
DESCRIPTION | 6 +++--- MD5 | 14 ++++++++++---- NAMESPACE | 4 ++++ NEWS.md | 6 ++++++ R/positron.R |only R/python_venv.R |only README.md | 6 ------ man/positron.Rd |only man/python_venv.Rd |only tests/testthat/test-positron.R |only tests/testthat/test-python_venv.R |only 11 files changed, 23 insertions(+), 13 deletions(-)
Title: Combining Tree-Boosting with Gaussian Process and Mixed Effects
Models
Description: An R package that allows for combining tree-boosting with Gaussian process and mixed effects models. It also allows for independently doing tree-boosting as well as inference and prediction for Gaussian process and mixed effects models. See <https://github.com/fabsig/GPBoost> for more information on the software and Sigrist (2022, JMLR) <https://www.jmlr.org/papers/v23/20-322.html> and Sigrist (2023, TPAMI) <doi:10.1109/TPAMI.2022.3168152> for more information on the methodology.
Author: Fabio Sigrist [aut, cre],
Tim Gyger [aut],
Pascal Kuendig [aut],
Benoit Jacob [cph],
Gael Guennebaud [cph],
Nicolas Carre [cph],
Pierre Zoppitelli [cph],
Gauthier Brun [cph],
Jean Ceccato [cph],
Jitse Niesen [cph],
Other authors of Eigen for the incl [...truncated...]
Maintainer: Fabio Sigrist <fabiosigrist@gmail.com>
Diff between gpboost versions 1.5.1.2 dated 2024-08-26 and 1.5.4 dated 2024-11-15
DESCRIPTION | 8 MD5 | 94 R/GPModel.R | 98 R/gpb.cv.R | 152 R/gpboost.R | 16 README.md | 5 configure.ac | 2 demo/GPBoost_algorithm.R | 157 demo/generalized_linear_Gaussian_process_mixed_effects_models.R | 28 man/GPModel.Rd | 26 man/GPModel_shared_params.Rd | 17 man/fit.GPModel.Rd | 13 man/fit.Rd | 11 man/fitGPModel.Rd | 43 man/gpb.cv.Rd | 56 man/gpb.grid.search.tune.parameters.Rd | 125 man/gpb_shared_params.Rd | 21 man/predict.GPModel.Rd | 2 man/set_optim_params.GPModel.Rd | 11 man/set_optim_params.Rd | 11 man/summary.GPModel.Rd | 2 src/CG_utils.cpp | 7 src/Vecchia_utils.cpp | 1013 + src/c_api.cpp | 2 src/gpboost_R.cpp | 4 src/gpboost_R.h | 2 src/include/GPBoost/CG_utils.h | 4 src/include/GPBoost/Vecchia_utils.h | 968 - src/include/GPBoost/cov_fcts.h | 2936 +--- src/include/GPBoost/likelihoods.h | 959 + src/include/GPBoost/optim_utils.h | 54 src/include/GPBoost/re_comp.h | 183 src/include/GPBoost/re_model.h | 2 src/include/GPBoost/re_model_template.h | 2908 ++-- src/include/GPBoost/sparse_matrix_utils.h | 44 src/include/GPBoost/utils.h | 8 src/include/LBFGS.h | 116 src/include/LBFGSpp/LineSearchBacktracking.h | 2 src/include/LBFGSpp/LineSearchNocedalWright.h | 4 src/include/LightGBM/c_api.h | 2 src/include/unconstrained/bfgs.hpp | 28 src/include/unconstrained/nm.hpp | 31 src/re_model.cpp | 62 tests/testthat/test_GPModel_gaussian_process.R | 248 tests/testthat/test_GPModel_grouped_random_effects.R | 5 tests/testthat/test_GPModel_non_Gaussian_data.R | 6206 ++++------ tests/testthat/test_basic.R | 16 tests/testthat/test_z_GPBoost_algorithm_non_Gaussian_data.R | 70 48 files changed, 8577 insertions(+), 8205 deletions(-)
Title: Shared, Joint (Generalized) Frailty Models; Surrogate Endpoints
Description: The following several classes of frailty models using a penalized likelihood estimation on the hazard function but also a parametric estimation can be fit using this R package:
1) A shared frailty model (with gamma or log-normal frailty distribution) and Cox proportional hazard model. Clustered and recurrent survival times can be studied.
2) Additive frailty models for proportional hazard models with two correlated random effects (intercept random effect with random slope).
3) Nested frailty models for hierarchically clustered data (with 2 levels of clustering) by including two iid gamma random effects.
4) Joint frailty models in the context of the joint modelling for recurrent events with terminal event for clustered data or not. A joint frailty model for two semi-competing risks and clustered data is also proposed.
5) Joint general frailty models in the context of the joint modelling for recurrent events with terminal event data with two independent frailty terms.
6) Joint Nested fra [...truncated...]
Author: Virginie Rondeau [aut, cre] ,
Juan R. Gonzalez [aut],
Yassin Mazroui [aut],
Audrey Mauguen [aut],
Amadou Diakite [aut],
Alexandre Laurent [aut],
Myriam Lopez [aut],
Agnieszka Krol [aut],
Casimir L. Sofeu [aut],
Julien Dumerc [aut],
Denis Rustand [aut [...truncated...]
Maintainer: Virginie Rondeau <virginie.rondeau@u-bordeaux.fr>
Diff between frailtypack versions 3.6.3 dated 2024-10-19 and 3.6.4 dated 2024-11-15
DESCRIPTION | 8 +- MD5 | 12 +-- NEWS | 3 R/longiPenal.R | 63 ++++++++-------- R/plot.longiPenal.R | 187 ++++++++++++++++++++++++------------------------- R/print.longiPenal.R | 30 +++---- R/summary.longiPenal.R | 16 ++-- 7 files changed, 161 insertions(+), 158 deletions(-)
Title: Interface with the United Nations Comtrade API
Description: Interface with and extract data from the United Nations 'Comtrade'
API <https://comtradeplus.un.org/>. 'Comtrade' provides country level shipping
data for a variety of commodities, these functions allow for easy API query
and data returned as a tidy data frame.
Author: Paul Bochtler [aut, cre, cph] ,
Harriet Goers [aut],
Chris Muir [aut],
Alicia Schep [rev] ,
Rafael Hellwig [rev] ,
Ernest Guevarra [rev] ,
Nicholas Potter [rev] ,
Juergen Amann [ctb]
Maintainer: Paul Bochtler <paulbochtler.gh@gmail.com>
Diff between comtradr versions 1.0.2 dated 2024-09-20 and 1.0.3 dated 2024-11-15
DESCRIPTION | 8 MD5 | 36 +-- NEWS.md | 5 R/ct_get_bulk.R | 7 R/ct_get_data.R | 1 R/ct_process_response.R | 4 R/utils.R | 26 -- README.md | 14 - build/vignette.rds |binary inst/doc/bulk_files.html | 2 inst/doc/caching.html | 2 inst/doc/comtradr.html | 8 inst/doc/large_data.html | 4 inst/doc/transition.html | 4 tests/testthat/data/comtradeapi.un.org/data/v1/get/C/A/HS-60a6ad.json | 2 tests/testthat/goods/comtradeapi.un.org/data/v1/get/C/A/HS-5e2730.R | 58 ----- tests/testthat/services/comtradeapi.un.org/data/v1/get/S/A/EB-b31ccb.R | 28 -- tests/testthat/test-ct_get_bulk.R | 115 ++++++---- tests/testthat/test-ct_get_data.R | 84 ++++--- 19 files changed, 185 insertions(+), 223 deletions(-)
Title: Archetypes for Targets
Description: Function-oriented Make-like declarative pipelines for
Statistics and data science are supported in the 'targets' R package.
As an extension to 'targets', the 'tarchetypes' package provides
convenient user-side functions to make 'targets' easier to use.
By establishing reusable archetypes for common kinds of
targets and pipelines, these functions help express complicated
reproducible pipelines concisely and compactly.
The methods in this package were influenced by the 'targets' R package.
by Will Landau (2018) <doi:10.21105/joss.00550>.
Author: William Michael Landau [aut, cre]
,
Rudolf Siegel [ctb] ,
Samantha Oliver [rev] ,
Tristan Mahr [rev] ,
Eli Lilly and Company [cph, fnd]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between tarchetypes versions 0.10.0 dated 2024-09-26 and 0.11.0 dated 2024-11-15
DESCRIPTION | 19 ++- MD5 | 107 +++++++++--------- NAMESPACE | 1 NEWS.md | 8 + R/tar_force.R | 2 R/tar_map.R | 4 R/tar_map2_raw.R | 6 - R/tar_map_rep.R | 2 R/tar_map_rep_raw.R | 18 ++- R/tar_package.R | 2 R/tar_quarto.R | 2 R/tar_quarto_files.R | 87 +++++++++++--- R/tar_quarto_raw.R | 14 ++ R/tar_quarto_rep_raw.R | 11 + R/tar_render_rep_raw.R | 6 - R/tar_rep2_raw.R | 6 - R/tar_rep_raw.R | 3 R/utils_targets.R | 9 + man/tar_age.Rd | 78 ++++++------- man/tar_change.Rd | 80 +++++++------ man/tar_combine.Rd | 80 +++++++------ man/tar_download.Rd | 78 ++++++------- man/tar_file_read.Rd | 80 +++++++------ man/tar_files.Rd | 80 +++++++------ man/tar_files_input.Rd | 34 ++++- man/tar_force.Rd | 80 +++++++------ man/tar_formats.Rd | 80 +++++++------ man/tar_formats_superseded.Rd | 80 +++++++------ man/tar_group_by.Rd | 80 +++++++------ man/tar_group_count.Rd | 80 +++++++------ man/tar_group_select.Rd | 80 +++++++------ man/tar_group_size.Rd | 80 +++++++------ man/tar_knit.Rd | 48 +++++--- man/tar_map2.Rd | 80 +++++++------ man/tar_map2_count.Rd | 80 +++++++------ man/tar_map2_size.Rd | 80 +++++++------ man/tar_map_rep.Rd | 88 ++++++++------ man/tar_quarto.Rd | 55 ++++++--- man/tar_quarto_files.Rd | 10 + man/tar_quarto_files_get_source_files.Rd |only man/tar_quarto_rep.Rd | 48 +++++--- man/tar_render.Rd | 48 +++++--- man/tar_render_rep.Rd | 48 +++++--- man/tar_rep.Rd | 80 +++++++------ man/tar_rep2.Rd | 80 +++++++------ man/tar_rep_map.Rd | 80 +++++++------ man/tar_rep_map_raw.Rd | 80 +++++++------ man/tar_skip.Rd | 80 +++++++------ tests/testthat/helper-utils.R | 9 + tests/testthat/test-tar_hook_before.R | 30 +++-- tests/testthat/test-tar_hook_inner.R | 24 ++-- tests/testthat/test-tar_hook_outer.R | 24 ++-- tests/testthat/test-tar_map_rep.R | 183 +++++++++++++++---------------- tests/testthat/test-tar_quarto.R | 157 ++++++++++++++++++++++++++ tests/testthat/test-tar_quarto_files.R | 102 +++++++++++++++++ 55 files changed, 1755 insertions(+), 1136 deletions(-)
Title: Flexible Bayesian Optimization
Description: A modern and flexible approach to Bayesian Optimization / Model
Based Optimization building on the 'bbotk' package. 'mlr3mbo' is a toolbox
providing both ready-to-use optimization algorithms as well as their fundamental
building blocks allowing for straightforward implementation of custom
algorithms. Single- and multi-objective optimization is supported as well as
mixed continuous, categorical and conditional search spaces. Moreover, using
'mlr3mbo' for hyperparameter optimization of machine learning models within the
'mlr3' ecosystem is straightforward via 'mlr3tuning'. Examples of ready-to-use
optimization algorithms include Efficient Global Optimization by Jones et al.
(1998) <doi:10.1023/A:1008306431147>, ParEGO by Knowles (2006)
<doi:10.1109/TEVC.2005.851274> and SMS-EGO by Ponweiser et al. (2008)
<doi:10.1007/978-3-540-87700-4_78>.
Author: Lennart Schneider [cre, aut] ,
Jakob Richter [aut] ,
Marc Becker [aut] ,
Michel Lang [aut] ,
Bernd Bischl [aut] ,
Florian Pfisterer [aut] ,
Martin Binder [aut],
Sebastian Fischer [aut] ,
Michael H. Buselli [cph],
Wessel Dankers [cph],
Carlos Fonseca [...truncated...]
Maintainer: Lennart Schneider <lennart.sch@web.de>
Diff between mlr3mbo versions 0.2.6 dated 2024-10-16 and 0.2.7 dated 2024-11-15
DESCRIPTION | 30 ++--- MD5 | 138 +++++++++++++---------- NAMESPACE | 7 + NEWS.md | 8 + R/AcqFunction.R | 8 + R/AcqFunctionMulti.R | 2 R/AcqFunctionSmsEgo.R | 18 ++- R/AcqFunctionStochasticCB.R |only R/AcqFunctionStochasticEI.R |only R/AcqOptimizer.R | 28 ++-- R/OptimizerADBO.R |only R/OptimizerAsyncMbo.R |only R/OptimizerMbo.R | 98 +++++++++------- R/ResultAssigner.R | 2 R/ResultAssignerArchive.R | 17 +- R/ResultAssignerSurrogate.R | 23 ++- R/Surrogate.R | 56 +++++++-- R/SurrogateLearner.R | 40 ++++++ R/SurrogateLearnerCollection.R | 72 +++++++++++- R/TunerADBO.R |only R/TunerAsyncMbo.R |only R/TunerMbo.R | 7 - R/bayesopt_ego.R | 4 R/bayesopt_emo.R | 4 R/bayesopt_mpcl.R | 4 R/bayesopt_parego.R | 6 - R/bayesopt_smsego.R | 4 R/bibentries.R | 11 + R/mbo_defaults.R | 31 +++-- R/sugar.R | 4 R/zzz.R | 2 README.md | 8 - build/partial.rdb |binary man/AcqFunction.Rd | 17 ++ man/AcqOptimizer.Rd | 23 +++ man/ResultAssigner.Rd | 2 man/Surrogate.Rd | 20 +++ man/SurrogateLearner.Rd | 6 + man/SurrogateLearnerCollection.Rd | 8 + man/acqo.Rd | 4 man/default_acqfunction.Rd | 8 - man/default_surrogate.Rd | 19 ++- man/mlr_acqfunctions.Rd | 4 man/mlr_acqfunctions_aei.Rd | 5 man/mlr_acqfunctions_cb.Rd | 5 man/mlr_acqfunctions_ehvi.Rd | 5 man/mlr_acqfunctions_ehvigh.Rd | 5 man/mlr_acqfunctions_ei.Rd | 5 man/mlr_acqfunctions_eips.Rd | 5 man/mlr_acqfunctions_mean.Rd | 5 man/mlr_acqfunctions_multi.Rd | 7 - man/mlr_acqfunctions_pi.Rd | 5 man/mlr_acqfunctions_sd.Rd | 5 man/mlr_acqfunctions_smsego.Rd | 27 ++++ man/mlr_acqfunctions_stochastic_cb.Rd |only man/mlr_acqfunctions_stochastic_ei.Rd |only man/mlr_loop_functions_ego.Rd | 4 man/mlr_loop_functions_emo.Rd | 4 man/mlr_loop_functions_mpcl.Rd | 4 man/mlr_loop_functions_parego.Rd | 6 - man/mlr_loop_functions_smsego.Rd | 4 man/mlr_optimizers_adbo.Rd |only man/mlr_optimizers_async_mbo.Rd |only man/mlr_optimizers_mbo.Rd | 44 +++++-- man/mlr_result_assigners_archive.Rd | 2 man/mlr_result_assigners_surrogate.Rd | 4 man/mlr_tuners_adbo.Rd |only man/mlr_tuners_async_mbo.Rd |only man/mlr_tuners_mbo.Rd | 4 tests/testthat/helper.R | 35 ++++- tests/testthat/test_AcqFunctionSmsEgo.R | 5 tests/testthat/test_AcqFunctionStochasticCB.R |only tests/testthat/test_AcqFunctionStochasticEI.R |only tests/testthat/test_OptimizerADBO.R |only tests/testthat/test_OptimizerAsyncMbo.R |only tests/testthat/test_SurrogateLearner.R | 3 tests/testthat/test_SurrogateLearnerCollection.R | 3 tests/testthat/test_TunerADBO.R |only tests/testthat/test_TunerAsyncMbo.R |only 79 files changed, 674 insertions(+), 270 deletions(-)
Title: Profile R Code and Visualize with 'Pprof'
Description: Like similar profiling tools,
the 'proffer' package automatically detects
sources of slowness in R code.
The distinguishing feature of 'proffer' is its utilization of
'pprof', which supplies interactive visualizations
that are efficient and easy to interpret.
Behind the scenes, the 'profile' package converts
native Rprof() data to a protocol buffer
that 'pprof' understands.
For the documentation of 'proffer',
visit <https://r-prof.github.io/proffer/>.
To learn about the implementations and methodologies of
'pprof', 'profile', and protocol buffers,
visit <https://github.com/google/pprof>.
<https://protobuf.dev>,
and <https://github.com/r-prof/profile>, respectively.
Author: William Michael Landau [aut, cre]
,
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between proffer versions 0.2.1 dated 2024-10-30 and 0.2.2 dated 2024-11-15
DESCRIPTION | 10 +++++----- MD5 | 20 ++++++++++---------- NAMESPACE | 1 + NEWS.md | 4 ++++ R/package.R | 1 + R/pprof.R | 8 +++++++- R/record.R | 30 +++++++++++++++++++++++------- man/pprof.Rd | 6 ++++++ man/record_pprof.Rd | 10 +++++++--- man/record_rprof.Rd | 7 ++++++- tests/local/test-interactive.R | 8 ++++++++ 11 files changed, 78 insertions(+), 27 deletions(-)
Title: A Generic Convex-Hull-Based Model Selection Method
Description: Given a set of models for which a measure of model (mis)fit and model complexity is provided, CHull(), developed by Ceulemans and Kiers (2006) <doi:10.1348/000711005X64817>, determines the models that are located on the boundary of the convex hull and selects an optimal model by means of the scree test values.
Author: Marlies Vervloet [aut, trl],
Tom Wilderjans [aut],
Jeffrey Durieux [aut],
Eva Ceulemans [aut],
Kristof Meers [cre]
Maintainer: Kristof Meers <kristof.meers+cran@kuleuven.be>
Diff between multichull versions 3.0.0 dated 2024-07-18 and 3.0.1 dated 2024-11-15
DESCRIPTION | 27 ++++++++++++++++++++++----- MD5 | 6 +++--- NEWS.md | 3 +++ R/plot.MultiCHullcom.R | 2 +- 4 files changed, 29 insertions(+), 9 deletions(-)
Title: Regression and Clustering in Multivariate Response Scenarios
Description: Fitting multivariate response models with random effects on one or two levels; whereby the (one-dimensional) random effect represents a latent variable approximating the multivariate space of outcomes, after possible adjustment for covariates. The method is particularly useful for multivariate, highly correlated outcome variables with unobserved heterogeneities. Applications include regression with multivariate responses, as well as multivariate clustering or ranking problems. See Zhang and Einbeck (2024) <doi:10.1007/s42519-023-00357-0>.
Author: Yingjuan Zhang [aut, cre],
Jochen Einbeck [aut, ctb]
Maintainer: Yingjuan Zhang <yingjuan.zhang@durham.ac.uk>
Diff between mult.latent.reg versions 0.2.0 dated 2024-10-24 and 0.2.1 dated 2024-11-15
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/trading_data.R | 6 +++--- man/trading_data.Rd | 6 +++--- 4 files changed, 12 insertions(+), 12 deletions(-)
More information about mult.latent.reg at CRAN
Permanent link
Title: Latent Interaction (and Moderation) Analysis in Structural
Equation Models (SEM)
Description: Estimation of interaction (i.e., moderation) effects between latent variables
in structural equation models (SEM).
The supported methods are:
The constrained approach (Algina & Moulder, 2001).
The unconstrained approach (Marsh et al., 2004).
The residual centering approach (Little et al., 2006).
The double centering approach (Lin et al., 2010).
The latent moderated structural equations (LMS) approach (Klein & Moosbrugger, 2000).
The quasi-maximum likelihood (QML) approach (Klein & Muthén, 2007) (temporarily unavailable)
The constrained- unconstrained, residual- and double centering- approaches
are estimated via 'lavaan' (Rosseel, 2012), whilst the LMS- and QML- approaches
are estimated via by modsem it self. Alternatively model can be
estimated via 'Mplus' (Muthén & Muthén, 1998-2017).
References:
Algina, J., & Moulder, B. C. (2001).
<doi:10.1207/S15328007SEM0801_3>.
"A note on estimating the Jöreskog-Yang model for latent variable interaction using 'LISREL' 8 [...truncated...]
Author: Kjell Solem Slupphaug [aut, cre]
,
Mehmet Mehmetoglu [ctb] ,
Matthias Mittner [ctb]
Maintainer: Kjell Solem Slupphaug <slupphaugkjell@gmail.com>
Diff between modsem versions 1.0.3 dated 2024-09-23 and 1.0.4 dated 2024-11-15
DESCRIPTION | 26 ++- MD5 | 222 +++++++++++++++++--------------- NAMESPACE | 2 R/calc_se_da.R | 164 +++++++++++++---------- R/check_model_da.R |only R/constraints_pi_ca.R | 149 ++++++++++++--------- R/construct_matrices_da.R | 164 ++++++++++++----------- R/cov_model.R | 34 ++-- R/create_labels_pi_ca.R | 8 - R/datasets.R | 159 ++++++++++++++++------ R/equations_qml.R | 86 ++++++++---- R/est_lms.R | 55 ++++--- R/est_qml.R | 24 +-- R/fit_modsem_da.R | 36 ++--- R/generics.R | 166 +++++++++++++---------- R/generics_modsem_da.R | 107 +++++++-------- R/generics_modsem_mplus.R | 34 ++-- R/generics_modsem_pi.R | 38 ++++- R/inspect_da.R | 16 +- R/labelled_params_da.R | 31 ++-- R/lavaan_labels.R | 6 R/lexer.R | 2 R/method_settings_da.R | 52 +++---- R/method_settings_pi.R | 2 R/model_da.R | 129 +++++++++--------- R/model_parameters_da.R | 48 +++--- R/model_pi.R | 59 ++++---- R/modsem.R | 56 ++++---- R/modsem_da.R | 69 +++++---- R/modsem_mplus.R | 48 +++--- R/modsem_pi.R | 176 +++++++++++++------------ R/optimize_da.R | 84 ++++++------ R/parser.R | 12 - R/plot_interaction.R | 44 +++--- R/print_partable.R | 106 +++++++-------- R/quadrature.R | 6 R/residual_cov_pi.R | 6 R/run_multiple_models.R | 6 R/set_threads.R | 4 R/simulate_partable.R | 67 ++++----- R/tokenizer.R | 8 - R/trace_paths_wright.R | 74 +++++----- R/utils.R | 121 +++++++++++++---- R/utils_da.R | 128 +++++------------- R/utils_pi.R | 125 +++++++++++++++--- R/zzz.R |only README.md | 29 +++- build/vignette.rds |binary data/TPB_1SO.rda |only data/TPB_2SO.rda |only inst/CITATION |only inst/doc/customizing.R | 78 +++++------ inst/doc/customizing.Rmd | 29 +--- inst/doc/customizing.html | 96 ++++--------- inst/doc/higher_order_interactions.R |only inst/doc/higher_order_interactions.Rmd |only inst/doc/higher_order_interactions.html |only inst/doc/interaction_two_etas.R | 66 ++++----- inst/doc/interaction_two_etas.Rmd | 52 ++----- inst/doc/interaction_two_etas.html | 82 ++++++----- inst/doc/lavaan.R | 32 ++-- inst/doc/lms_qml.R | 84 ++++++------ inst/doc/lms_qml.Rmd | 51 ++----- inst/doc/lms_qml.html | 79 ++++++----- inst/doc/methods.R | 41 +++-- inst/doc/methods.Rmd | 39 +++-- inst/doc/methods.html | 56 ++++---- inst/doc/modsem.R | 173 ++++++++++++------------ inst/doc/modsem.Rmd | 70 ++++------ inst/doc/modsem.html | 166 ++++++++++++----------- inst/doc/observed_lms_qml.R | 89 ++++++------ inst/doc/observed_lms_qml.Rmd | 58 ++------ inst/doc/observed_lms_qml.html | 91 ++++++------- inst/doc/plot_interactions.R | 8 - inst/doc/plot_interactions.Rmd | 31 ++-- inst/doc/plot_interactions.html | 32 ++-- inst/doc/quadratic.R | 48 +++--- inst/doc/quadratic.Rmd | 10 - inst/doc/quadratic.html | 27 ++- man/TPB.Rd | 6 man/TPB_1SO.Rd |only man/TPB_2SO.Rd |only man/TPB_UK.Rd | 12 - man/coef_modsem_da.Rd | 2 man/compare_fit.Rd | 6 man/extract_lavaan.Rd | 6 man/fit_modsem_da.Rd | 8 - man/get_pi_data.Rd | 6 man/get_pi_syntax.Rd | 6 man/jordan.Rd | 22 +-- man/modsem-package.Rd | 8 + man/modsem.Rd | 30 ++-- man/modsem_da.Rd | 29 ++-- man/modsem_inspect.Rd | 4 man/modsem_mplus.Rd | 8 - man/modsem_pi.Rd | 31 ++-- man/plot_interaction.Rd | 4 man/standardized_estimates.Rd | 16 +- man/summary.Rd | 4 man/trace_path.Rd | 6 man/var_interactions.Rd | 2 man/vcov_modsem_da.Rd | 2 tests/testthat/test_higher_order.R |only tests/testthat/test_intchecks.R |only tests/testthat/test_labels_lav.R |only tests/testthat/test_lav_models.R | 22 ++- tests/testthat/test_linear_da.R |only tests/testthat/test_lms.R | 63 ++++----- tests/testthat/test_ovchecks_da.R |only tests/testthat/test_tpb.R | 4 vignettes/customizing.Rmd | 29 +--- vignettes/higher_order_interactions.Rmd |only vignettes/interaction_two_etas.Rmd | 52 ++----- vignettes/lms_qml.Rmd | 51 ++----- vignettes/methods.Rmd | 39 +++-- vignettes/modsem.Rmd | 70 ++++------ vignettes/observed_lms_qml.Rmd | 58 ++------ vignettes/plot_interactions.Rmd | 31 ++-- vignettes/quadratic.Rmd | 10 - vignettes/set_eval_false.bash |only vignettes/set_eval_true.bash |only 121 files changed, 2764 insertions(+), 2459 deletions(-)
Title: A Distributed Worker Launcher Framework
Description: In computationally demanding analysis projects,
statisticians and data scientists asynchronously
deploy long-running tasks to distributed systems,
ranging from traditional clusters to cloud services.
The 'NNG'-powered 'mirai' R package by Gao (2023)
<doi:10.5281/zenodo.7912722> is a sleek
and sophisticated scheduler that
efficiently processes these intense workloads.
The 'crew' package extends 'mirai' with a unifying
interface for third-party worker launchers.
Inspiration also comes from packages.
'future' by Bengtsson (2021) <doi:10.32614/RJ-2021-048>,
'rrq' by FitzJohn and Ashton (2023) <https://github.com/mrc-ide/rrq>,
'clustermq' by Schubert (2019) <doi:10.1093/bioinformatics/btz284>),
and 'batchtools' by Lang, Bischel, and Surmann (2017)
<doi:10.21105/joss.00135>.
Author: William Michael Landau [aut, cre]
,
Daniel Woodie [ctb],
Eli Lilly and Company [cph, fnd]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between crew versions 0.10.1 dated 2024-11-03 and 0.10.2 dated 2024-11-15
crew-0.10.1/crew/tests/local/test-launch_max.R |only crew-0.10.2/crew/DESCRIPTION | 17 crew-0.10.2/crew/MD5 | 58 - crew-0.10.2/crew/NAMESPACE | 2 crew-0.10.2/crew/NEWS.md | 11 crew-0.10.2/crew/R/crew_controller_local.R | 15 crew-0.10.2/crew/R/crew_eval.R | 6 crew-0.10.2/crew/R/crew_launcher.R | 130 +- crew-0.10.2/crew/R/crew_launcher_local.R | 19 crew-0.10.2/crew/R/crew_options_metrics.R | 15 crew-0.10.2/crew/R/crew_package.R | 1 crew-0.10.2/crew/R/crew_worker.R | 6 crew-0.10.2/crew/R/utils_packages.R | 11 crew-0.10.2/crew/inst/WORDLIST | 1 crew-0.10.2/crew/inst/doc/plugins.Rmd | 24 crew-0.10.2/crew/inst/doc/plugins.html | 541 +++++------ crew-0.10.2/crew/man/crew_class_launcher.Rd | 39 crew-0.10.2/crew/man/crew_class_launcher_local.Rd | 5 crew-0.10.2/crew/man/crew_controller_local.Rd | 30 crew-0.10.2/crew/man/crew_launcher.Rd | 30 crew-0.10.2/crew/man/crew_launcher_local.Rd | 28 crew-0.10.2/crew/man/crew_options_metrics.Rd | 15 crew-0.10.2/crew/man/crew_worker.Rd | 5 crew-0.10.2/crew/tests/local/test-backlog_seconds_idle.R | 3 crew-0.10.2/crew/tests/local/test-crashes_error.R |only crew-0.10.2/crew/tests/local/test-launcher-system2.R | 4 crew-0.10.2/crew/tests/testthat/test-crew_controller_local.R | 2 crew-0.10.2/crew/tests/testthat/test-crew_launcher.R | 36 crew-0.10.2/crew/tests/testthat/test-crew_worker.R | 3 crew-0.10.2/crew/tests/testthat/test-plugins.R | 12 crew-0.10.2/crew/vignettes/plugins.Rmd | 24 31 files changed, 640 insertions(+), 453 deletions(-)
Title: Genome Wide Association Studies
Description: Fast single trait Genome Wide Association Studies (GWAS) following
the method described in Kang et al. (2010), <doi:10.1038/ng.548>.
One of a series of statistical genetic packages for streamlining the
analysis of typical plant breeding experiments developed by Biometris.
Author: Bart-Jan van Rossum [aut, cre]
,
Willem Kruijer [aut] ,
Fred van Eeuwijk [ctb] ,
Martin Boer [ctb] ,
Marcos Malosetti [ctb] ,
Daniela Bustos-Korts [ctb] ,
Emilie Millet [ctb] ,
Joao Paulo [ctb] ,
Maikel Verouden [ctb] ,
Ron Wehrens [ctb] ,
Choazhi Zh [...truncated...]
Maintainer: Bart-Jan van Rossum <bart-jan.vanrossum@wur.nl>
Diff between statgenGWAS versions 1.0.9 dated 2022-10-13 and 1.0.10 dated 2024-11-15
statgenGWAS-1.0.10/statgenGWAS/DESCRIPTION | 14 statgenGWAS-1.0.10/statgenGWAS/MD5 | 51 statgenGWAS-1.0.10/statgenGWAS/NAMESPACE | 2 statgenGWAS-1.0.10/statgenGWAS/NEWS.md | 10 statgenGWAS-1.0.10/statgenGWAS/R/EMMA.R | 151 - statgenGWAS-1.0.10/statgenGWAS/R/GWASHelp.R | 5 statgenGWAS-1.0.10/statgenGWAS/R/createGData.R | 17 statgenGWAS-1.0.10/statgenGWAS/R/geneticMapPlot.R | 15 statgenGWAS-1.0.10/statgenGWAS/R/manhattanPlot.R | 2 statgenGWAS-1.0.10/statgenGWAS/R/qqPlot.R | 3 statgenGWAS-1.0.10/statgenGWAS/R/qtlPlot.R | 39 statgenGWAS-1.0.10/statgenGWAS/R/runSingleTraitGwas.R | 4 statgenGWAS-1.0.10/statgenGWAS/R/statgenGWAS.R | 1 statgenGWAS-1.0.10/statgenGWAS/build/partial.rdb |binary statgenGWAS-1.0.10/statgenGWAS/build/vignette.rds |binary statgenGWAS-1.0.10/statgenGWAS/configure | 1637 +++++++++------ statgenGWAS-1.0.10/statgenGWAS/configure.ac | 3 statgenGWAS-1.0.10/statgenGWAS/inst/doc/GWAS.R | 10 statgenGWAS-1.0.10/statgenGWAS/inst/doc/GWAS.Rmd | 21 statgenGWAS-1.0.10/statgenGWAS/inst/doc/GWAS.html | 598 ++--- statgenGWAS-1.0.10/statgenGWAS/man/plot.GWAS.Rd | 444 ++-- statgenGWAS-1.0.10/statgenGWAS/man/plot.gData.Rd | 120 - statgenGWAS-1.0.10/statgenGWAS/man/runSingleTraitGwas.Rd | 2 statgenGWAS-1.0.10/statgenGWAS/src/Makevars.in | 1 statgenGWAS-1.0.10/statgenGWAS/src/Makevars.win | 2 statgenGWAS-1.0.10/statgenGWAS/vignettes/GWAS.Rmd | 21 statgenGWAS-1.0.9/statgenGWAS/R/writeFlapJack.R |only 27 files changed, 1804 insertions(+), 1369 deletions(-)
Title: Sequence Symmetry Analysis Using the Observational Medical
Outcomes Partnership Common Data Model
Description: Calculating crude sequence ratio, adjusted sequence ratio and
confidence intervals using data mapped to the Observational Medical
Outcomes Partnership Common Data Model.
Author: Xihang Chen [aut, cre] ,
Tyman Stanford [aut] ,
Berta Raventos [aut] ,
Nicole Pratt [aut] ,
Ed Burn [aut] ,
Marti Catala [aut] ,
Danielle Newby [aut] ,
Nuria Mercade-Besora [aut] ,
Mike Du [aut] ,
Yuchen Guo [aut] ,
Kim Lopez [aut] ,
Marta Alcalde-He [...truncated...]
Maintainer: Xihang Chen <xihang.chen@ndorms.ox.ac.uk>
Diff between CohortSymmetry versions 0.1.3 dated 2024-09-23 and 0.1.4 dated 2024-11-15
CohortSymmetry-0.1.3/CohortSymmetry/R/adjustedSequenceRatio.R |only CohortSymmetry-0.1.3/CohortSymmetry/R/utils-pipe.R |only CohortSymmetry-0.1.3/CohortSymmetry/inst/doc/a02_Generate_a_sequence_cohort_set.R |only CohortSymmetry-0.1.3/CohortSymmetry/inst/doc/a02_Generate_a_sequence_cohort_set.Rmd |only CohortSymmetry-0.1.3/CohortSymmetry/inst/doc/a02_Generate_a_sequence_cohort_set.html |only CohortSymmetry-0.1.3/CohortSymmetry/man/pipe.Rd |only CohortSymmetry-0.1.3/CohortSymmetry/vignettes/a02_Generate_a_sequence_cohort_set.Rmd |only CohortSymmetry-0.1.4/CohortSymmetry/DESCRIPTION | 23 CohortSymmetry-0.1.4/CohortSymmetry/MD5 | 92 CohortSymmetry-0.1.4/CohortSymmetry/NAMESPACE | 3 CohortSymmetry-0.1.4/CohortSymmetry/R/CohortSymmetry-package.R | 21 CohortSymmetry-0.1.4/CohortSymmetry/R/crudeSequenceRatio.R | 30 CohortSymmetry-0.1.4/CohortSymmetry/R/displayTables.R | 496 +- CohortSymmetry-0.1.4/CohortSymmetry/R/generateSequenceCohortSet.R | 692 +-- CohortSymmetry-0.1.4/CohortSymmetry/R/getConfidenceInterval.R | 89 CohortSymmetry-0.1.4/CohortSymmetry/R/getSummarisedResult.R | 134 CohortSymmetry-0.1.4/CohortSymmetry/R/helpers.R |only CohortSymmetry-0.1.4/CohortSymmetry/R/inputValidation.R | 17 CohortSymmetry-0.1.4/CohortSymmetry/R/mockCohortSymmetry.R | 182 CohortSymmetry-0.1.4/CohortSymmetry/R/nullSequenceRatio.R | 243 - CohortSymmetry-0.1.4/CohortSymmetry/R/plotSequenceRatios.R | 226 - CohortSymmetry-0.1.4/CohortSymmetry/R/plotTemporalSymmetry.R | 164 CohortSymmetry-0.1.4/CohortSymmetry/R/summariseSequenceRatios.R | 399 -- CohortSymmetry-0.1.4/CohortSymmetry/README.md | 8 CohortSymmetry-0.1.4/CohortSymmetry/build/vignette.rds |binary CohortSymmetry-0.1.4/CohortSymmetry/inst/doc/a01_Introduction.Rmd | 268 - CohortSymmetry-0.1.4/CohortSymmetry/inst/doc/a01_Introduction.html | 154 CohortSymmetry-0.1.4/CohortSymmetry/inst/doc/a02_Generate_a_sequence_cohort.R |only CohortSymmetry-0.1.4/CohortSymmetry/inst/doc/a02_Generate_a_sequence_cohort.Rmd |only CohortSymmetry-0.1.4/CohortSymmetry/inst/doc/a02_Generate_a_sequence_cohort.html |only CohortSymmetry-0.1.4/CohortSymmetry/inst/doc/a03_Summarise_sequence_ratios.R | 6 CohortSymmetry-0.1.4/CohortSymmetry/inst/doc/a03_Summarise_sequence_ratios.Rmd | 247 - CohortSymmetry-0.1.4/CohortSymmetry/inst/doc/a03_Summarise_sequence_ratios.html | 70 CohortSymmetry-0.1.4/CohortSymmetry/inst/doc/a04_Visualise_sequence_ratios.Rmd | 372 - CohortSymmetry-0.1.4/CohortSymmetry/inst/doc/a04_Visualise_sequence_ratios.html | 450 +- CohortSymmetry-0.1.4/CohortSymmetry/inst/doc/a05_Summarise_temporal_symmetry.Rmd | 244 - CohortSymmetry-0.1.4/CohortSymmetry/inst/doc/a05_Summarise_temporal_symmetry.html | 24 CohortSymmetry-0.1.4/CohortSymmetry/inst/doc/a06_Visualise_temporal_symmetry.Rmd | 262 - CohortSymmetry-0.1.4/CohortSymmetry/inst/doc/a06_Visualise_temporal_symmetry.html | 12 CohortSymmetry-0.1.4/CohortSymmetry/man/CohortSymmetry-package.Rd | 4 CohortSymmetry-0.1.4/CohortSymmetry/man/generateSequenceCohortSet.Rd | 15 CohortSymmetry-0.1.4/CohortSymmetry/man/summariseSequenceRatios.Rd | 5 CohortSymmetry-0.1.4/CohortSymmetry/tests/testthat/test-attrition.R | 28 CohortSymmetry-0.1.4/CohortSymmetry/tests/testthat/test-eunomia.R | 138 CohortSymmetry-0.1.4/CohortSymmetry/tests/testthat/test-generateSequenceCohortSet.R | 1991 ++++------ CohortSymmetry-0.1.4/CohortSymmetry/tests/testthat/test-plotTemporalSymmetry.R | 278 - CohortSymmetry-0.1.4/CohortSymmetry/tests/testthat/test-summariseSequenceRatios.R | 1931 ++++----- CohortSymmetry-0.1.4/CohortSymmetry/vignettes/a01_Introduction.Rmd | 268 - CohortSymmetry-0.1.4/CohortSymmetry/vignettes/a02_Generate_a_sequence_cohort.Rmd |only CohortSymmetry-0.1.4/CohortSymmetry/vignettes/a03_Summarise_sequence_ratios.Rmd | 247 - CohortSymmetry-0.1.4/CohortSymmetry/vignettes/a04_Visualise_sequence_ratios.Rmd | 372 - CohortSymmetry-0.1.4/CohortSymmetry/vignettes/a05_Summarise_temporal_symmetry.Rmd | 244 - CohortSymmetry-0.1.4/CohortSymmetry/vignettes/a06_Visualise_temporal_symmetry.Rmd | 262 - 53 files changed, 5301 insertions(+), 5410 deletions(-)
More information about CohortSymmetry at CRAN
Permanent link
Title: Extract Tables from PDF Documents
Description: Bindings for the 'Tabula' <https://tabula.technology/> 'Java'
library, which can extract tables from PDF files. This tool can reduce time
and effort in data extraction processes in fields like investigative
journalism. It allows for automatic and manual table extraction, the latter
facilitated through a 'Shiny' interface, enabling manual areas selection\
with a computer mouse for data retrieval.
Author: Thomas J. Leeper [aut] ,
Mauricio Vargas Sepulveda [aut, cre]
,
Tom Paskhalis [aut] ,
Manuel Aristaran [ctb],
David Gohel [ctb] ,
Lincoln Mullen [ctb] ,
Munk School of Global Affairs and Public Policy [fnd]
Maintainer: Mauricio Vargas Sepulveda <m.sepulveda@mail.utoronto.ca>
Diff between tabulapdf versions 1.0.5-3 dated 2024-05-21 and 1.0.5-5 dated 2024-11-15
DESCRIPTION | 15 +++++++++------ MD5 | 29 ++++++++++++++++------------- NEWS.md | 12 ++++++++++++ R/extract_text.R | 5 ----- R/get_page_dims.R | 1 - R/locate_area.R | 23 +++++++++++++++++------ R/make_thumbnails.R | 4 ++-- build/vignette.rds |binary inst/doc/tabulapdf.R | 4 ++-- inst/doc/tabulapdf.Rmd | 4 ++-- inst/doc/tabulapdf.html | 4 ++-- inst/examples/argentina.pdf |only inst/examples/quebec.pdf |only inst/examples/xbar.pdf |only man/extract_areas.Rd | 3 +++ tests/testthat/test_non-latin.R | 6 ++++-- vignettes/tabulapdf.Rmd | 4 ++-- 17 files changed, 71 insertions(+), 43 deletions(-)
Title: Update and Manipulate Rd Documentation Objects
Description: Functions for manipulation of R documentation objects,
including functions reprompt() and ereprompt() for updating 'Rd'
documentation for functions, methods and classes; 'Rd' macros for
citations and import of references from 'bibtex' files for use in
'Rd' files and 'roxygen2' comments; 'Rd' macros for evaluating and
inserting snippets of 'R' code and the results of its evaluation or
creating graphics on the fly; and many functions for manipulation of
references and Rd files.
Author: Georgi N. Boshnakov [aut, cre],
Duncan Murdoch [ctb]
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between Rdpack versions 2.6.1 dated 2024-08-06 and 2.6.2 dated 2024-11-15
Rdpack-2.6.1/Rdpack/inst/auto |only Rdpack-2.6.1/Rdpack/inst/examples/RdpackTester/inst/auto |only Rdpack-2.6.1/Rdpack/vignettes/auto |only Rdpack-2.6.2/Rdpack/DESCRIPTION | 6 Rdpack-2.6.2/Rdpack/MD5 | 25 Rdpack-2.6.2/Rdpack/NEWS.md | 15 Rdpack-2.6.2/Rdpack/R/RStudio.R | 84 +-- Rdpack-2.6.2/Rdpack/R/bib.R | 275 ++++------ Rdpack-2.6.2/Rdpack/build/partial.rdb |binary Rdpack-2.6.2/Rdpack/inst/REFERENCES.bib | 3 Rdpack-2.6.2/Rdpack/inst/doc/Inserting_bibtex_references.pdf |binary Rdpack-2.6.2/Rdpack/inst/doc/Inserting_figures_and_evaluated_examples.pdf |binary Rdpack-2.6.2/Rdpack/man/RStudio_reprompt.Rd | 2 Rdpack-2.6.2/Rdpack/man/macros/refmacros.Rd | 50 - Rdpack-2.6.2/Rdpack/tests/testthat/test-bib.R | 2 15 files changed, 237 insertions(+), 225 deletions(-)
Title: 3D Prioritization Algorithm
Description: Three-dimensional systematic conservation planning, conducting
nested prioritization analyses across multiple depth levels and
ensuring efficient resource allocation throughout the water column.
It provides a structured workflow designed to address biodiversity
conservation and management challenges in the 3 dimensions, while
facilitating users’ choices and parameterization (Doxa et al. 2024
<doi:10.1016/j.ecolmodel.2024.110919>).
Author: Aggeliki Doxa [aut] ,
Christos Adam [aut, cre],
Nikolaos Nagkoulis [aut] ,
Antonios D. Mazaris [aut] ,
Stelios Katsanevakis [aut]
Maintainer: Christos Adam <econp266@econ.soc.uoc.gr>
Diff between prior3D versions 0.1.2 dated 2024-11-06 and 0.1.3 dated 2024-11-15
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS.md | 6 ++++++ README.md | 2 +- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 2 +- 7 files changed, 19 insertions(+), 13 deletions(-)
Title: Draw Flows (Migration, Goods, Money, Information) on 'ggplot2'
Plots
Description: Adds flow maps to 'ggplot2' plots. The flow maps consist of 'ggplot2' layers which visualize the nodes as circles and the bilateral flows between the nodes as bidirectional half-arrows.
Author: Johannes Mast [aut, cre]
Maintainer: Johannes Mast <johannes.mast@dlr.de>
Diff between flowmapper versions 0.1.2 dated 2024-09-06 and 0.1.3 dated 2024-11-15
DESCRIPTION | 8 - MD5 | 11 +- NAMESPACE | 1 NEWS.md | 4 R/add_flowmap.R | 235 ++++++++++++++++++++++++++++++++++++++--------------- inst |only man/add_flowmap.Rd | 7 + 7 files changed, 188 insertions(+), 78 deletions(-)
Title: CFO-Type Designs in Phase I/II Clinical Trials
Description: In phase I clinical trials, the primary objective is to ascertain the maximum tolerated dose (MTD) corresponding to a specified target toxicity rate. The subsequent phase II trials are designed to examine the potential efficacy of the drug based on the MTD obtained from the phase I trials, with the aim of identifying the optimal biological dose (OBD). The 'CFO' package facilitates the implementation of dose-finding trials by utilizing calibration-free odds type (CFO-type) designs. Specifically, it encompasses the calibration-free odds (CFO) (Jin and Yin (2022) <doi:10.1177/09622802221079353>), randomized CFO (rCFO), precision CFO (pCFO), two-dimensional CFO (2dCFO) (Wang et al. (2023) <doi:10.3389/fonc.2023.1294258>), time-to-event CFO (TITE-CFO) (Jin and Yin (2023) <doi:10.1002/pst.2304>), fractional CFO (fCFO), accumulative CFO (aCFO), TITE-aCFO, and f-aCFO (Fang and Yin (2024) <doi: 10.1002/sim.10127>). It supports phase I/II trials for the CFO design and onl [...truncated...]
Author: Jialu Fang [aut, cre],
Ninghao Zhang [aut],
Wenliang Wang [aut],
Guosheng Yin [aut]
Maintainer: Jialu Fang <u3008682@connect.hku.hk>
Diff between CFO versions 2.1.0 dated 2024-10-15 and 2.2.0 dated 2024-11-15
DESCRIPTION | 8 MD5 | 24 - NAMESPACE | 1 R/CFO.oc.R | 486 +++++++++++++++++------------------ R/CFO.simu.R | 461 ++++++++++++++++----------------- R/lateonset.next.R | 690 ++++++++++++++++++++++++-------------------------- R/lateonset.simu.R | 525 +++++++++++++++++++------------------- R/pCFO.next.R |only R/plot.cfo.R | 1 man/CFO.oc.Rd | 20 - man/CFO.simu.Rd | 12 man/lateonset.next.Rd | 13 man/lateonset.simu.Rd | 4 man/pCFO.next.Rd |only 14 files changed, 1124 insertions(+), 1121 deletions(-)
Title: Datasets for 'spatstat' Family
Description: Contains all the datasets for the 'spatstat' family of packages.
Author: Adrian Baddeley [aut, cre] ,
Rolf Turner [aut] ,
Ege Rubak [aut] ,
W Aherne [ctb],
Freda Alexander [ctb],
Qi Wei Ang [ctb],
Sourav Banerjee [ctb],
Mark Berman [ctb],
R Bernhardt [ctb],
Thomas Berndtsen [ctb],
Andrew Bevan [ctb],
Jeffrey Betts [ctb],
[...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.data versions 3.1-2 dated 2024-06-21 and 3.1-4 dated 2024-11-15
DESCRIPTION | 8 +- MD5 | 128 ++++++++++++++++++++++----------------------- NEWS | 20 +++++++ data/Kovesi.rda |binary data/amacrine.rda |binary data/anemones.rda |binary data/ants.rda |binary data/austates.rda |binary data/bdspots.rda |binary data/bei.rda |binary data/betacells.rda |binary data/bramblecanes.rda |binary data/bronzefilter.rda |binary data/btb.rda |binary data/cells.rda |binary data/cetaceans.rda |binary data/chicago.rda |binary data/chorley.rda |binary data/clmfires.rda |binary data/concrete.rda |binary data/copper.rda |binary data/demohyper.rda |binary data/demopat.rda |binary data/dendrite.rda |binary data/finpines.rda |binary data/flu.rda |binary data/ganglia.rda |binary data/gordon.rda |binary data/gorillas.rda |binary data/hamster.rda |binary data/heather.rda |binary data/humberside.rda |binary data/hyytiala.rda |binary data/japanesepines.rda |binary data/lansing.rda |binary data/letterR.rda |binary data/longleaf.rda |binary data/mucosa.rda |binary data/murchison.rda |binary data/nbfires.rda |binary data/nztrees.rda |binary data/osteo.rda |binary data/paracou.rda |binary data/ponderosa.rda |binary data/pyramidal.rda |binary data/redwood.rda |binary data/redwood3.rda |binary data/redwoodfull.rda |binary data/residualspaper.rda |binary data/shapley.rda |binary data/shelling.rda |only data/simba.rda |binary data/simdat.rda |binary data/simplenet.rda |binary data/spiders.rda |binary data/sporophores.rda |binary data/spruces.rda |binary data/stonetools.rda |binary data/swedishpines.rda |binary data/urkiola.rda |binary data/vesicles.rda |binary data/waka.rda |binary data/waterstriders.rda |binary inst/doc/packagesizes.txt | 2 inst/info/packagesizes.txt | 1 man/shelling.Rd |only 66 files changed, 92 insertions(+), 67 deletions(-)
Title: Minimalist Async Evaluation Framework for R
Description: Designed for simplicity, a 'mirai' evaluates an R expression
asynchronously in a parallel process, locally or distributed over the
network, with the result automatically available upon completion. Modern
networking and concurrency built on 'nanonext' and 'NNG' (Nanomsg Next Gen)
ensure reliable and efficient scheduling, over fast inter-process
communications or TCP/IP secured by TLS. Advantages include being inherently
queued thus handling many more tasks than available processes, no storage on
the file system, support for otherwise non-exportable reference objects, an
event-driven promises implementation, and built-in asynchronous parallel
map.
Author: Charlie Gao [aut, cre] ,
Joe Cheng [ctb],
Hibiki AI Limited [cph]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between mirai versions 1.3.0 dated 2024-10-09 and 1.3.1 dated 2024-11-15
mirai-1.3.0/mirai/man/serialization.Rd |only mirai-1.3.1/mirai/DESCRIPTION | 6 mirai-1.3.1/mirai/MD5 | 107 +++--- mirai-1.3.1/mirai/NAMESPACE | 1 mirai-1.3.1/mirai/NEWS.md | 7 mirai-1.3.1/mirai/R/daemon.R | 139 ++++---- mirai-1.3.1/mirai/R/daemons.R | 471 +++++++++++++---------------- mirai-1.3.1/mirai/R/dispatcher.R | 124 +++---- mirai-1.3.1/mirai/R/launchers.R | 216 ++++++------- mirai-1.3.1/mirai/R/map.R | 105 +++--- mirai-1.3.1/mirai/R/mirai-package.R | 43 +- mirai-1.3.1/mirai/R/mirai.R | 276 ++++++++-------- mirai-1.3.1/mirai/R/next.R | 33 -- mirai-1.3.1/mirai/R/parallel.R | 83 ++--- mirai-1.3.1/mirai/R/promises.R | 14 mirai-1.3.1/mirai/README.md | 8 mirai-1.3.1/mirai/build/vignette.rds |binary mirai-1.3.1/mirai/inst/doc/databases.html | 15 mirai-1.3.1/mirai/inst/doc/mirai.Rmd | 122 +++---- mirai-1.3.1/mirai/inst/doc/mirai.html | 186 ++++++----- mirai-1.3.1/mirai/inst/doc/parallel.Rmd | 14 mirai-1.3.1/mirai/inst/doc/parallel.html | 27 - mirai-1.3.1/mirai/inst/doc/plumber.html | 15 mirai-1.3.1/mirai/inst/doc/promises.html | 13 mirai-1.3.1/mirai/inst/doc/shiny.html | 17 - mirai-1.3.1/mirai/inst/doc/torch.html | 15 mirai-1.3.1/mirai/man/as.promise.mirai.Rd | 10 mirai-1.3.1/mirai/man/call_mirai.Rd | 62 +-- mirai-1.3.1/mirai/man/collect_mirai.Rd | 57 +-- mirai-1.3.1/mirai/man/daemon.Rd | 99 +++--- mirai-1.3.1/mirai/man/daemons.Rd | 307 +++++++++--------- mirai-1.3.1/mirai/man/dispatcher.Rd | 60 +-- mirai-1.3.1/mirai/man/dot-flat.Rd | 47 +- mirai-1.3.1/mirai/man/everywhere.Rd | 56 +-- mirai-1.3.1/mirai/man/host_url.Rd | 24 - mirai-1.3.1/mirai/man/is_mirai.Rd | 2 mirai-1.3.1/mirai/man/is_mirai_error.Rd | 20 - mirai-1.3.1/mirai/man/launch_local.Rd | 36 +- mirai-1.3.1/mirai/man/make_cluster.Rd | 63 +-- mirai-1.3.1/mirai/man/mirai-package.Rd | 35 +- mirai-1.3.1/mirai/man/mirai.Rd | 111 +++--- mirai-1.3.1/mirai/man/mirai_map.Rd | 91 ++--- mirai-1.3.1/mirai/man/nextstream.Rd | 23 - mirai-1.3.1/mirai/man/register_cluster.Rd | 4 mirai-1.3.1/mirai/man/remote_config.Rd | 80 ++-- mirai-1.3.1/mirai/man/saisei.Rd | 38 +- mirai-1.3.1/mirai/man/serial_config.Rd | 12 mirai-1.3.1/mirai/man/status.Rd | 46 +- mirai-1.3.1/mirai/man/stop_mirai.Rd | 16 mirai-1.3.1/mirai/man/unresolved.Rd | 16 mirai-1.3.1/mirai/man/with.miraiDaemons.Rd | 8 mirai-1.3.1/mirai/tests/tests.R | 16 mirai-1.3.1/mirai/vignettes/mirai.Rmd | 122 +++---- mirai-1.3.1/mirai/vignettes/mirai.Rmd.orig | 21 - mirai-1.3.1/mirai/vignettes/parallel.Rmd | 14 55 files changed, 1773 insertions(+), 1780 deletions(-)
Title: Classifications and Codelists for Statistics Norway
Description: Functions to search, retrieve, apply and update classifications
and codelists using Statistics Norway's API <https://www.ssb.no/klass>
from the system 'KLASS'. Retrieves classifications by date with options
to choose language, hierarchical level and formatting.
Author: Susie Jentoft [aut, cre],
Diana-Cristina Iancu [aut],
Lisa Li [aut],
Oeyvind I. Berntsen [aut],
Statistics Norway [cph]
Maintainer: Susie Jentoft <susie.jentoft@ssb.no>
Diff between klassR versions 0.2.4 dated 2024-08-16 and 1.0.0 dated 2024-11-15
klassR-0.2.4/klassR/man/ApplyKlass.Rd |only klassR-0.2.4/klassR/man/CorrespondList.Rd |only klassR-0.2.4/klassR/man/GetFamily.Rd |only klassR-0.2.4/klassR/man/GetKlass.Rd |only klassR-0.2.4/klassR/man/GetName.Rd |only klassR-0.2.4/klassR/man/GetVersion.Rd |only klassR-0.2.4/klassR/man/ListFamily.Rd |only klassR-0.2.4/klassR/man/ListKlass.Rd |only klassR-0.2.4/klassR/man/SearchKlass.Rd |only klassR-1.0.0/klassR/DESCRIPTION | 23 klassR-1.0.0/klassR/MD5 | 79 +- klassR-1.0.0/klassR/NAMESPACE | 13 klassR-1.0.0/klassR/NEWS.md | 5 klassR-1.0.0/klassR/R/Convert_table.R | 26 klassR-1.0.0/klassR/R/Hent_data.R | 351 +++++----- klassR-1.0.0/klassR/R/KLASS.R | 244 ++++-- klassR-1.0.0/klassR/R/Klass_list.R | 242 ++++-- klassR-1.0.0/klassR/R/Levels.R | 10 klassR-1.0.0/klassR/R/UpdateKlass-graph-build.R |only klassR-1.0.0/klassR/R/UpdateKlass-graph-navigate.R |only klassR-1.0.0/klassR/R/UpdateKlass.R |only klassR-1.0.0/klassR/R/checkLevel.R | 17 klassR-1.0.0/klassR/R/data.R | 21 klassR-1.0.0/klassR/R/format.R | 51 - klassR-1.0.0/klassR/data/klass_131_1964_graph.RData |only klassR-1.0.0/klassR/data/klass_131_2020_graph.RData |only klassR-1.0.0/klassR/data/klass_131_graph.RData |only klassR-1.0.0/klassR/data/klassdata.RData |binary klassR-1.0.0/klassR/man/MakeUrl.Rd | 4 klassR-1.0.0/klassR/man/apply_klass.Rd |only klassR-1.0.0/klassR/man/correspond_list.Rd |only klassR-1.0.0/klassR/man/count_neighbors.Rd |only klassR-1.0.0/klassR/man/find_dates.Rd |only klassR-1.0.0/klassR/man/find_name.Rd |only klassR-1.0.0/klassR/man/find_variant_from.Rd |only klassR-1.0.0/klassR/man/find_variant_to.Rd |only klassR-1.0.0/klassR/man/formattering.Rd | 4 klassR-1.0.0/klassR/man/get_family.Rd |only klassR-1.0.0/klassR/man/get_klass.Rd |only klassR-1.0.0/klassR/man/get_klass_changes.Rd |only klassR-1.0.0/klassR/man/get_name.Rd |only klassR-1.0.0/klassR/man/get_version.Rd |only klassR-1.0.0/klassR/man/is_combined.Rd |only klassR-1.0.0/klassR/man/is_split.Rd |only klassR-1.0.0/klassR/man/klass_131_1964_graph.Rd |only klassR-1.0.0/klassR/man/klass_131_2020_graph.Rd |only klassR-1.0.0/klassR/man/klass_131_graph.Rd |only klassR-1.0.0/klassR/man/klass_graph.Rd |only klassR-1.0.0/klassR/man/klass_node.Rd |only klassR-1.0.0/klassR/man/levelCheck.Rd | 2 klassR-1.0.0/klassR/man/list_family.Rd |only klassR-1.0.0/klassR/man/list_klass.Rd |only klassR-1.0.0/klassR/man/search_klass.Rd |only klassR-1.0.0/klassR/man/update_code.Rd |only klassR-1.0.0/klassR/man/update_klass.Rd |only klassR-1.0.0/klassR/man/update_klass_node.Rd |only klassR-1.0.0/klassR/tests/testthat/test-UpdateKlass-graph-navigate.R |only klassR-1.0.0/klassR/tests/testthat/test-UpdateKlass.R |only klassR-1.0.0/klassR/tests/testthat/test_ApplyKlass.R | 219 +++--- klassR-1.0.0/klassR/tests/testthat/test_GetKlass.R | 158 ++-- klassR-1.0.0/klassR/tests/testthat/test_ListKlass.R | 26 klassR-1.0.0/klassR/tests/testthat/test_formattering.R |only 62 files changed, 869 insertions(+), 626 deletions(-)
Title: Create Tables from Different Types of Regression
Description: Create regression tables from generalized linear model(GLM), generalized estimating equation(GEE), generalized linear mixed-effects model(GLMM), Cox proportional hazards model, survey-weighted generalized linear model(svyglm) and survey-weighted Cox model results for publication.
Author: Jinseob Kim [aut, cre] ,
Zarathu [cph, fnd],
Yoonkyoung Jeon [aut],
Jaehun Shon [aut],
Hyojong Myung [aut],
Hyungwoo Jo [aut]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jstable versions 1.3.5 dated 2024-10-20 and 1.3.6 dated 2024-11-15
DESCRIPTION | 16 MD5 | 43 - NAMESPACE | 11 NEWS.md | 6 R/CreateTableOneJS.R | 104 ++- R/cox2.R | 36 - R/forestcox.R | 1053 ++++++++++++++++++++------------ R/forestglm.R | 40 + R/svyCreateTableOneJS.R | 87 ++ build/vignette.rds |binary inst/doc/jstable.html | 42 - man/CreateTableOne2.Rd | 5 man/CreateTableOneJS.Rd | 8 man/TableSubgroupCox.Rd | 11 man/TableSubgroupGLM.Rd | 5 man/TableSubgroupMultiCox.Rd | 11 man/TableSubgroupMultiGLM.Rd | 5 man/count_event_by.Rd |only man/svyCreateTableOne2.Rd | 5 man/svyCreateTableOneJS.Rd | 5 tests/testthat/test-CreateTableOneJS.R | 2 tests/testthat/test-forestcox.R | 26 tests/testthat/test-svyCreateTableOne.R | 6 23 files changed, 1054 insertions(+), 473 deletions(-)
Title: Generalized Random Forests
Description: Forest-based statistical estimation and inference.
GRF provides non-parametric methods for heterogeneous treatment effects estimation
(optionally using right-censored outcomes, multiple treatment arms or outcomes, or instrumental variables),
as well as least-squares regression, quantile regression, and survival regression,
all with support for missing covariates.
Author: Julie Tibshirani [aut],
Susan Athey [aut],
Rina Friedberg [ctb],
Vitor Hadad [ctb],
David Hirshberg [ctb],
Luke Miner [ctb],
Erik Sverdrup [aut, cre],
Stefan Wager [aut],
Marvin Wright [ctb]
Maintainer: Erik Sverdrup <erik.sverdrup@monash.edu>
Diff between grf versions 2.3.2 dated 2024-02-25 and 2.4.0 dated 2024-11-15
grf-2.3.2/grf/R/deprecated.R |only grf-2.3.2/grf/man/average_late.Rd |only grf-2.3.2/grf/man/average_partial_effect.Rd |only grf-2.3.2/grf/man/custom_forest.Rd |only grf-2.3.2/grf/man/get_sample_weights.Rd |only grf-2.3.2/grf/man/tune_causal_forest.Rd |only grf-2.3.2/grf/man/tune_instrumental_forest.Rd |only grf-2.3.2/grf/man/tune_regression_forest.Rd |only grf-2.4.0/grf/DESCRIPTION | 8 grf-2.4.0/grf/MD5 | 324 ++++------ grf-2.4.0/grf/NAMESPACE | 8 grf-2.4.0/grf/R/RcppExports.R | 40 - grf-2.4.0/grf/R/average_treatment_effect.R | 4 grf-2.4.0/grf/R/causal_forest.R | 6 grf-2.4.0/grf/R/causal_survival_forest.R | 6 grf-2.4.0/grf/R/get_scores.R | 9 grf-2.4.0/grf/R/grf_options.R |only grf-2.4.0/grf/R/input_utilities.R | 12 grf-2.4.0/grf/R/instrumental_forest.R | 6 grf-2.4.0/grf/R/ll_regression_forest.R | 6 grf-2.4.0/grf/R/lm_forest.R | 5 grf-2.4.0/grf/R/multi_arm_causal_forest.R | 8 grf-2.4.0/grf/R/multi_regression_forest.R | 6 grf-2.4.0/grf/R/probability_forest.R | 6 grf-2.4.0/grf/R/quantile_forest.R | 6 grf-2.4.0/grf/R/rank_average_treatment.R | 4 grf-2.4.0/grf/R/regression_forest.R | 6 grf-2.4.0/grf/R/survival_forest.R | 6 grf-2.4.0/grf/R/tune_forest.R | 1 grf-2.4.0/grf/man/average_treatment_effect.Rd | 4 grf-2.4.0/grf/man/grf_options.Rd |only grf-2.4.0/grf/man/multi_arm_causal_forest.Rd | 2 grf-2.4.0/grf/man/predict.causal_forest.Rd | 2 grf-2.4.0/grf/man/predict.causal_survival_forest.Rd | 2 grf-2.4.0/grf/man/predict.instrumental_forest.Rd | 2 grf-2.4.0/grf/man/predict.ll_regression_forest.Rd | 2 grf-2.4.0/grf/man/predict.lm_forest.Rd | 2 grf-2.4.0/grf/man/predict.multi_arm_causal_forest.Rd | 2 grf-2.4.0/grf/man/predict.multi_regression_forest.Rd | 2 grf-2.4.0/grf/man/predict.probability_forest.Rd | 2 grf-2.4.0/grf/man/predict.quantile_forest.Rd | 2 grf-2.4.0/grf/man/predict.regression_forest.Rd | 2 grf-2.4.0/grf/man/predict.survival_forest.Rd | 2 grf-2.4.0/grf/man/rank_average_treatment_effect.Rd | 2 grf-2.4.0/grf/src/AnalysisToolsBindings.cpp | 4 grf-2.4.0/grf/src/CausalForestBindings.cpp | 7 grf-2.4.0/grf/src/CausalSurvivalForestBindings.cpp | 7 grf-2.4.0/grf/src/InstrumentalForestBindings.cpp | 7 grf-2.4.0/grf/src/MultiCausalForestBindings.cpp | 7 grf-2.4.0/grf/src/MultiRegressionForestBindings.cpp | 7 grf-2.4.0/grf/src/ProbabilityForestBindings.cpp | 7 grf-2.4.0/grf/src/QuantileForestBindings.cpp | 9 grf-2.4.0/grf/src/RcppExports.cpp | 90 +- grf-2.4.0/grf/src/RcppUtilities.cpp | 2 grf-2.4.0/grf/src/RcppUtilities.h | 2 grf-2.4.0/grf/src/RegressionForestBindings.cpp | 12 grf-2.4.0/grf/src/SurvivalForestBindings.cpp | 7 grf-2.4.0/grf/src/optional/optional.hpp | 118 ++- grf-2.4.0/grf/src/src/analysis/SplitFrequencyComputer.cpp | 4 grf-2.4.0/grf/src/src/analysis/SplitFrequencyComputer.h | 4 grf-2.4.0/grf/src/src/commons/Data.cpp | 4 grf-2.4.0/grf/src/src/commons/Data.h | 2 grf-2.4.0/grf/src/src/commons/utility.cpp | 2 grf-2.4.0/grf/src/src/commons/utility.h | 2 grf-2.4.0/grf/src/src/forest/Forest.cpp | 2 grf-2.4.0/grf/src/src/forest/Forest.h | 2 grf-2.4.0/grf/src/src/forest/ForestOptions.cpp | 12 grf-2.4.0/grf/src/src/forest/ForestOptions.h | 6 grf-2.4.0/grf/src/src/forest/ForestPredictor.cpp | 2 grf-2.4.0/grf/src/src/forest/ForestPredictor.h | 2 grf-2.4.0/grf/src/src/forest/ForestPredictors.cpp | 2 grf-2.4.0/grf/src/src/forest/ForestPredictors.h | 2 grf-2.4.0/grf/src/src/forest/ForestTrainer.cpp | 9 grf-2.4.0/grf/src/src/forest/ForestTrainer.h | 2 grf-2.4.0/grf/src/src/forest/ForestTrainers.cpp | 2 grf-2.4.0/grf/src/src/forest/ForestTrainers.h | 2 grf-2.4.0/grf/src/src/prediction/CausalSurvivalPredictionStrategy.cpp | 2 grf-2.4.0/grf/src/src/prediction/CausalSurvivalPredictionStrategy.h | 2 grf-2.4.0/grf/src/src/prediction/DefaultPredictionStrategy.h | 2 grf-2.4.0/grf/src/src/prediction/InstrumentalPredictionStrategy.cpp | 2 grf-2.4.0/grf/src/src/prediction/InstrumentalPredictionStrategy.h | 2 grf-2.4.0/grf/src/src/prediction/LLCausalPredictionStrategy.cpp | 2 grf-2.4.0/grf/src/src/prediction/LLCausalPredictionStrategy.h | 2 grf-2.4.0/grf/src/src/prediction/LocalLinearPredictionStrategy.cpp | 2 grf-2.4.0/grf/src/src/prediction/LocalLinearPredictionStrategy.h | 2 grf-2.4.0/grf/src/src/prediction/MultiCausalPredictionStrategy.cpp | 2 grf-2.4.0/grf/src/src/prediction/MultiCausalPredictionStrategy.h | 2 grf-2.4.0/grf/src/src/prediction/MultiRegressionPredictionStrategy.cpp | 2 grf-2.4.0/grf/src/src/prediction/MultiRegressionPredictionStrategy.h | 2 grf-2.4.0/grf/src/src/prediction/ObjectiveBayesDebiaser.cpp | 2 grf-2.4.0/grf/src/src/prediction/ObjectiveBayesDebiaser.h | 2 grf-2.4.0/grf/src/src/prediction/OptimizedPredictionStrategy.h | 2 grf-2.4.0/grf/src/src/prediction/Prediction.cpp | 2 grf-2.4.0/grf/src/src/prediction/Prediction.h | 2 grf-2.4.0/grf/src/src/prediction/PredictionValues.cpp | 2 grf-2.4.0/grf/src/src/prediction/PredictionValues.h | 2 grf-2.4.0/grf/src/src/prediction/ProbabilityPredictionStrategy.cpp | 2 grf-2.4.0/grf/src/src/prediction/ProbabilityPredictionStrategy.h | 2 grf-2.4.0/grf/src/src/prediction/QuantilePredictionStrategy.cpp | 2 grf-2.4.0/grf/src/src/prediction/QuantilePredictionStrategy.h | 2 grf-2.4.0/grf/src/src/prediction/RegressionPredictionStrategy.cpp | 2 grf-2.4.0/grf/src/src/prediction/RegressionPredictionStrategy.h | 2 grf-2.4.0/grf/src/src/prediction/SurvivalPredictionStrategy.cpp | 2 grf-2.4.0/grf/src/src/prediction/SurvivalPredictionStrategy.h | 4 grf-2.4.0/grf/src/src/prediction/collector/DefaultPredictionCollector.cpp | 2 grf-2.4.0/grf/src/src/prediction/collector/DefaultPredictionCollector.h | 2 grf-2.4.0/grf/src/src/prediction/collector/OptimizedPredictionCollector.cpp | 2 grf-2.4.0/grf/src/src/prediction/collector/OptimizedPredictionCollector.h | 2 grf-2.4.0/grf/src/src/prediction/collector/PredictionCollector.h | 2 grf-2.4.0/grf/src/src/prediction/collector/SampleWeightComputer.cpp | 4 grf-2.4.0/grf/src/src/prediction/collector/SampleWeightComputer.h | 4 grf-2.4.0/grf/src/src/prediction/collector/TreeTraverser.cpp | 4 grf-2.4.0/grf/src/src/prediction/collector/TreeTraverser.h | 4 grf-2.4.0/grf/src/src/relabeling/CausalSurvivalRelabelingStrategy.cpp | 2 grf-2.4.0/grf/src/src/relabeling/CausalSurvivalRelabelingStrategy.h | 2 grf-2.4.0/grf/src/src/relabeling/InstrumentalRelabelingStrategy.cpp | 2 grf-2.4.0/grf/src/src/relabeling/InstrumentalRelabelingStrategy.h | 2 grf-2.4.0/grf/src/src/relabeling/LLRegressionRelabelingStrategy.cpp | 2 grf-2.4.0/grf/src/src/relabeling/LLRegressionRelabelingStrategy.h | 2 grf-2.4.0/grf/src/src/relabeling/MultiCausalRelabelingStrategy.cpp | 2 grf-2.4.0/grf/src/src/relabeling/MultiCausalRelabelingStrategy.h | 2 grf-2.4.0/grf/src/src/relabeling/MultiNoopRelabelingStrategy.cpp | 2 grf-2.4.0/grf/src/src/relabeling/MultiNoopRelabelingStrategy.h | 2 grf-2.4.0/grf/src/src/relabeling/NoopRelabelingStrategy.cpp | 2 grf-2.4.0/grf/src/src/relabeling/NoopRelabelingStrategy.h | 2 grf-2.4.0/grf/src/src/relabeling/QuantileRelabelingStrategy.cpp | 2 grf-2.4.0/grf/src/src/relabeling/QuantileRelabelingStrategy.h | 2 grf-2.4.0/grf/src/src/relabeling/RelabelingStrategy.h | 2 grf-2.4.0/grf/src/src/sampling/RandomSampler.cpp | 2 grf-2.4.0/grf/src/src/sampling/RandomSampler.h | 2 grf-2.4.0/grf/src/src/sampling/SamplingOptions.cpp | 2 grf-2.4.0/grf/src/src/sampling/SamplingOptions.h | 2 grf-2.4.0/grf/src/src/splitting/CausalSurvivalSplittingRule.cpp | 2 grf-2.4.0/grf/src/src/splitting/CausalSurvivalSplittingRule.h | 4 grf-2.4.0/grf/src/src/splitting/InstrumentalSplittingRule.cpp | 2 grf-2.4.0/grf/src/src/splitting/InstrumentalSplittingRule.h | 4 grf-2.4.0/grf/src/src/splitting/MultiCausalSplittingRule.cpp | 2 grf-2.4.0/grf/src/src/splitting/MultiCausalSplittingRule.h | 2 grf-2.4.0/grf/src/src/splitting/MultiRegressionSplittingRule.cpp | 2 grf-2.4.0/grf/src/src/splitting/MultiRegressionSplittingRule.h | 2 grf-2.4.0/grf/src/src/splitting/ProbabilitySplittingRule.cpp | 2 grf-2.4.0/grf/src/src/splitting/ProbabilitySplittingRule.h | 2 grf-2.4.0/grf/src/src/splitting/RegressionSplittingRule.cpp | 2 grf-2.4.0/grf/src/src/splitting/RegressionSplittingRule.h | 2 grf-2.4.0/grf/src/src/splitting/SplittingRule.h | 2 grf-2.4.0/grf/src/src/splitting/SurvivalSplittingRule.cpp | 2 grf-2.4.0/grf/src/src/splitting/SurvivalSplittingRule.h | 2 grf-2.4.0/grf/src/src/splitting/factory/CausalSurvivalSplittingRuleFactory.cpp | 2 grf-2.4.0/grf/src/src/splitting/factory/CausalSurvivalSplittingRuleFactory.h | 2 grf-2.4.0/grf/src/src/splitting/factory/InstrumentalSplittingRuleFactory.cpp | 2 grf-2.4.0/grf/src/src/splitting/factory/InstrumentalSplittingRuleFactory.h | 2 grf-2.4.0/grf/src/src/splitting/factory/MultiCausalSplittingRuleFactory.cpp | 2 grf-2.4.0/grf/src/src/splitting/factory/MultiCausalSplittingRuleFactory.h | 2 grf-2.4.0/grf/src/src/splitting/factory/MultiRegressionSplittingRuleFactory.cpp | 2 grf-2.4.0/grf/src/src/splitting/factory/MultiRegressionSplittingRuleFactory.h | 4 grf-2.4.0/grf/src/src/splitting/factory/ProbabilitySplittingRuleFactory.cpp | 2 grf-2.4.0/grf/src/src/splitting/factory/ProbabilitySplittingRuleFactory.h | 2 grf-2.4.0/grf/src/src/splitting/factory/RegressionSplittingRuleFactory.cpp | 2 grf-2.4.0/grf/src/src/splitting/factory/RegressionSplittingRuleFactory.h | 2 grf-2.4.0/grf/src/src/splitting/factory/SplittingRuleFactory.h | 2 grf-2.4.0/grf/src/src/splitting/factory/SurvivalSplittingRuleFactory.cpp | 2 grf-2.4.0/grf/src/src/splitting/factory/SurvivalSplittingRuleFactory.h | 2 grf-2.4.0/grf/src/src/tree/Tree.cpp | 2 grf-2.4.0/grf/src/src/tree/Tree.h | 2 grf-2.4.0/grf/src/src/tree/TreeOptions.cpp | 2 grf-2.4.0/grf/src/src/tree/TreeOptions.h | 2 grf-2.4.0/grf/src/src/tree/TreeTrainer.cpp | 2 grf-2.4.0/grf/src/src/tree/TreeTrainer.h | 2 168 files changed, 700 insertions(+), 356 deletions(-)
Title: Extending 'dendrogram' Functionality in R
Description: Offers a set of functions for extending
'dendrogram' objects in R, letting you visualize and compare trees of
'hierarchical clusterings'. You can (1) Adjust a tree's graphical parameters
- the color, size, type, etc of its branches, nodes and labels. (2)
Visually and statistically compare different 'dendrograms' to one another.
Author: Tal Galili [aut, cre, cph] ,
Yoav Benjamini [ths],
Gavin Simpson [ctb],
Gregory Jefferis [aut, ctb] ,
Marco Gallotta [ctb] ,
Johan Renaudie [ctb] ,
The R Core Team [ctb] ,
Kurt Hornik [ctb],
Uwe Ligges [ctb],
Andrej-Nikolai Spiess [ctb],
Steve Horvat [...truncated...]
Maintainer: Tal Galili <tal.galili@gmail.com>
Diff between dendextend versions 1.18.1 dated 2024-10-12 and 1.19.0 dated 2024-11-15
DESCRIPTION | 8 MD5 | 91 ++++--- NAMESPACE | 4 NEWS.md | 12 R/all.equal.R | 15 + R/dendlist.R | 1 R/pvclust.R | 3 R/untangle.R | 8 inst/doc/Cluster_Analysis.html | 4 inst/doc/FAQ.html | 4 inst/doc/Quick_Introduction.html | 4 inst/doc/dendextend.html | 8 man/all.equal.dendrogram.Rd | 20 - tests/testthat/Rplots.pdf |only tests/testthat/test-Hmisc.R |only tests/testthat/test-all.equal.R |only tests/testthat/test-attr_access.R | 209 ++++++++++++++++ tests/testthat/test-bk_method.R | 113 ++++++++ tests/testthat/test-branches_attr_by.R | 108 ++++++++ tests/testthat/test-circlize.R |only tests/testthat/test-color_branches.R |only tests/testthat/test-colored_bars.R |only tests/testthat/test-colored_dots.R |only tests/testthat/test-common_subtrees.R | 50 +++ tests/testthat/test-cor.dendlist.R |only tests/testthat/test-cor_bakers_gamma.R | 45 +++ tests/testthat/test-cut_lower_fun.R | 9 tests/testthat/test-cutree.dendrogram.R | 93 +++++++ tests/testthat/test-dendlist.R | 76 +++++ tests/testthat/test-depth.R |only tests/testthat/test-dist_long.R |only tests/testthat/test-distinct_edges.R | 63 ++++ tests/testthat/test-entanglement.R | 44 +++ tests/testthat/test-find_dend.R |only tests/testthat/test-find_k.R |only tests/testthat/test-get_nodes_xy.R | 74 +++++ tests/testthat/test-ggdend.R | 30 ++ tests/testthat/test-ggdendro.R |only tests/testthat/test-has_edgePar.R |only tests/testthat/test-highlight_branches.R | 6 tests/testthat/test-is.functions.R |only tests/testthat/test-labels-assign.R | 72 +++++ tests/testthat/test-labels_colors.R | 48 +++ tests/testthat/test-nleaves.R | 50 +++ tests/testthat/test-noded_with_condition.R |only tests/testthat/test-prune.R |only tests/testthat/test-pvclust_extract.R | 139 ++++++++++ tests/testthat/test-rainbow_fun.R |only tests/testthat/test-rect.dendrogram.R | 116 +++++++- tests/testthat/test-rotate.R | 128 +++++++++ tests/testthat/test-sample.dendrogram.R |only tests/testthat/test-seriate_dendrogram.R |only tests/testthat/test-set.dendrogram.R | 52 ++++ tests/testthat/test-stats_imports.R |only tests/testthat/test-tanglegram.R |only tests/testthat/test-unbranch.R | 43 +++ tests/testthat/test-untangle.R | 374 +++++++++++++++++++++++++---- tests/testthat/test-zzz.R |only 58 files changed, 1984 insertions(+), 140 deletions(-)
Title: Spatial Data Science Complementary Features
Description: Wrapping and supplementing commonly used functions in the R ecosystem related to spatial data science,
while serving as a basis for other packages maintained by Wenbo Lv.
Author: Wenbo Lv [aut, cre, cph]
Maintainer: Wenbo Lv <lyu.geosocial@gmail.com>
Diff between sdsfun versions 0.4.2 dated 2024-11-11 and 0.4.3 dated 2024-11-15
DESCRIPTION | 8 ++-- MD5 | 19 ++++++---- NAMESPACE | 2 + NEWS.md | 4 ++ R/ssh_test.R | 17 +++++++++ R/utils.R | 83 ---------------------------------------------- R/vector_toolkits.R |only man/discretize_vector.Rd | 2 - man/generate_subsets.Rd |only man/geodetector_q.Rd |only man/normalize_vector.Rd | 2 - man/standardize_vector.Rd | 2 - 12 files changed, 41 insertions(+), 98 deletions(-)
Title: Background Resource Logging
Description: Intense parallel workloads can be difficult to monitor.
Packages 'crew.cluster', 'clustermq', and 'future.batchtools'
distribute hundreds of worker processes over multiple computers.
If a worker process exhausts its available memory,
it may terminate silently, leaving the underlying problem difficult
to detect or troubleshoot.
Using the 'autometric' package, a worker can proactively monitor
itself in a detached background thread.
The worker process itself runs normally,
and the thread writes to a log every few seconds.
If the worker terminates unexpectedly, 'autometric' can read and
visualize the log file to reveal potential resource-related
reasons for the crash. The 'autometric' package borrows heavily from
the methods of packages 'ps' <doi:10.32614/CRAN.package.ps> and 'psutil'.
Author: William Michael Landau [aut, cre]
,
Eli Lilly and Company [cph, fnd],
Posit Software, PBC [cph] ,
Jay Loden [cph] ,
Dave Daeschler [cph] ,
Giampaolo Rodola [cph]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between autometric versions 0.1.1 dated 2024-11-14 and 0.1.2 dated 2024-11-15
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 6 ++++++ R/log_phase_set.R | 4 ---- R/log_plot.R | 2 +- inst/WORDLIST | 1 + src/thread.c | 2 +- src/version.h | 2 +- 8 files changed, 20 insertions(+), 17 deletions(-)
More information about ReportSubtotal at CRAN
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