Title: Analysis of Korean National Forest Inventory Database
Description: Understanding the current status of forest resources is essential for monitoring changes
in forest ecosystems and generating related statistics. In South Korea, the National Forest
Inventory (NFI) surveys over 4,500 sample plots nationwide every five years and records 70 items,
including forest stand, forest resource, and forest vegetation surveys. Many researchers use NFI
as the primary data for research, such as biomass estimation or analyzing the importance value of
each species over time and space, depending on the research purpose. However, the large volume
of accumulated forest survey data from across the country can make it challenging to manage and
utilize such a vast dataset. To address this issue, we developed an R package that efficiently
handles large-scale NFI data across time and space. The package offers a comprehensive
workflow for NFI data analysis. It starts with data processing, where read_nfi() function
reconstructs NFI data according to the researcher's needs while [...truncated...]
Author: Sinyoung Park [aut, cre] ,
Wonhee Cho [aut, ctb] ,
Inyoo Kim [aut, ctb] ,
Wontaek Lim [aut, ctb] ,
Dongwook W. Ko [aut, ths]
Maintainer: Sinyoung Park <youngsin0306@kookmin.ac.kr>
Diff between knfi versions 1.0.0 dated 2024-10-14 and 1.0.1 dated 2024-11-20
knfi-1.0.0/knfi/R/summary_NFI.R |only knfi-1.0.0/knfi/data/col_name.rda |only knfi-1.0.0/knfi/man/col_name.Rd |only knfi-1.0.1/knfi/DESCRIPTION | 8 knfi-1.0.1/knfi/MD5 | 60 +-- knfi-1.0.1/knfi/NAMESPACE | 6 knfi-1.0.1/knfi/NEWS.md | 15 knfi-1.0.1/knfi/R/biomass_nfi.R | 92 +++--- knfi-1.0.1/knfi/R/cwd_biomass_nfi.R | 35 +- knfi-1.0.1/knfi/R/diversity_nfi.R | 68 ++++ knfi-1.0.1/knfi/R/filter_nfi.R | 161 +++++----- knfi-1.0.1/knfi/R/globalvars.R | 6 knfi-1.0.1/knfi/R/info_nfi.R | 6 knfi-1.0.1/knfi/R/iv_nfi.R | 112 ++++--- knfi-1.0.1/knfi/R/read_nfi.R | 93 +++--- knfi-1.0.1/knfi/R/summary_nfi.R |only knfi-1.0.1/knfi/R/switchcol_nfi.R | 14 knfi-1.0.1/knfi/R/sysdata.rda |binary knfi-1.0.1/knfi/R/tsvis_nfi.R | 505 +++++++++++++++++++-------------- knfi-1.0.1/knfi/README.md | 1 knfi-1.0.1/knfi/data/nfi_col.rda |only knfi-1.0.1/knfi/inst/doc/knfi.R | 23 - knfi-1.0.1/knfi/inst/doc/knfi.Rmd | 23 - knfi-1.0.1/knfi/inst/doc/knfi.html | 61 ++- knfi-1.0.1/knfi/man/biomass_nfi.Rd | 7 knfi-1.0.1/knfi/man/cwd_biomass_nfi.Rd | 7 knfi-1.0.1/knfi/man/diversity_nfi.Rd | 13 knfi-1.0.1/knfi/man/iv_nfi.Rd | 11 knfi-1.0.1/knfi/man/nfi_col.Rd |only knfi-1.0.1/knfi/man/read_nfi.Rd | 17 - knfi-1.0.1/knfi/man/summary_nfi.Rd | 14 knfi-1.0.1/knfi/man/switchcol_nfi.Rd | 2 knfi-1.0.1/knfi/man/tsvis_nfi.Rd | 37 ++ knfi-1.0.1/knfi/vignettes/knfi.Rmd | 23 - 34 files changed, 875 insertions(+), 545 deletions(-)
Title: Play Minesweeper
Description: Play and record games of minesweeper using a graphics device that supports event handling.
Replay recorded games and save GIF animations of them. Based on classic minesweeper as detailed by
Crow P. (1997) <https://minesweepergame.com/math/a-mathematical-introduction-to-the-game-of-minesweeper-1997.pdf>.
Author: Harry Thompson [aut, cre, cph]
Maintainer: Harry Thompson <harry@mayesfield.uk>
Diff between minesweeper versions 1.0.0 dated 2024-08-30 and 1.0.1 dated 2024-11-20
DESCRIPTION | 8 MD5 | 93 +++++------ NEWS.md | 2 R/cell2grob.R | 24 +- R/chord.R | 22 +- R/count2str.R | 14 - R/create_viewports.R | 128 +++++++-------- R/draw_cell.R | 6 R/draw_count.R | 32 +-- R/draw_raster.R | 10 - R/flag_cell.R | 18 +- R/get_extdata.R | 6 R/hide_cells.R | 16 - R/in_smiley.R | 6 R/interpolate.R | 6 R/minesweeper-package.R | 12 - R/ndc2cell.R | 18 +- R/neighbors.R | 14 - R/new_board.R | 10 - R/new_mineplot.R | 20 +- R/new_mines.R | 12 - R/no_play.R | 6 R/on_board.R | 6 R/on_mouse_down.R | 26 +-- R/on_mouse_up.R | 32 +-- R/peek_cell.R | 8 R/peek_neighbors.R | 8 R/play_minesweeper.R | 362 +++++++++++++++++++++++--------------------- R/print.R | 10 - R/refresh_board.R | 8 R/replay.R | 98 +++++------ R/replay_minesweeper.R | 32 +-- R/reveal.R | 34 ++-- R/reveal_surrounding.R | 12 - R/save_minesweeper_gif.R | 88 +++++----- R/set_board.R | 24 +- R/update_cell.R | 12 - R/update_cells.R | 18 +- R/update_minecount.R | 10 - R/update_neighbors.R | 10 - R/update_smiley.R | 10 - R/update_timer.R | 10 - R/wind.R | 20 +- README.md | 72 ++++---- man/figures |only man/play_minesweeper.Rd | 20 ++ man/replay_minesweeper.Rd | 4 man/save_minesweeper_gif.Rd | 4 48 files changed, 730 insertions(+), 691 deletions(-)
Title: Read, Plot and Analyse Output from the DEPONS Model
Description: Methods for analyzing population dynamics and movement tracks simulated using the DEPONS model <https://www.depons.eu> (v.3.0), for manipulating input raster files, shipping routes and for analyzing sound propagated from ships.
Author: Jacob Nabe-Nielsen [aut, cre],
Caitlin K. Frankish [aut]
Maintainer: Jacob Nabe-Nielsen <jnn@ecos.au.dk>
Diff between DEPONS2R versions 1.2.3 dated 2024-06-28 and 1.2.4 dated 2024-11-20
DESCRIPTION | 20 +++++-- MD5 | 19 +++--- NAMESPACE | 2 R/a-misc.R | 2 R/dyn-methods.R | 89 +++++++++++++++++++++++++++++++- R/track-methods.R | 25 ++++++++ build/partial.rdb |binary man/DEPONS2R.Rd | 2 man/as.data.frame-DeponsDyn-method.Rd |only man/as.data.frame-DeponsTrack-method.Rd |only man/make.DeponsDyn.Rd |only man/read.DeponsDyn.Rd | 3 - 12 files changed, 144 insertions(+), 18 deletions(-)
Title: Gaussian Location-Scale Regression
Description: The Gaussian location-scale regression model is a multi-predictor
model with explanatory variables for the mean (= location) and the standard
deviation (= scale) of a response variable. This package implements maximum
likelihood and Markov chain Monte Carlo (MCMC) inference (using algorithms
from Girolami and Calderhead (2011) <doi:10.1111/j.1467-9868.2010.00765.x>
and Nesterov (2009) <doi:10.1007/s10107-007-0149-x>), a parametric
bootstrap algorithm, and diagnostic plots for the model class.
Author: Hannes Riebl [aut, cre]
Maintainer: Hannes Riebl <hriebl@posteo.de>
Diff between lmls versions 0.1.0 dated 2022-01-18 and 0.1.1 dated 2024-11-20
DESCRIPTION | 15 ++++++++------- LICENSE | 2 +- MD5 | 24 ++++++++++++------------ NEWS.md | 6 ++++++ R/testthat-helpers.R | 2 +- README.md | 36 ++++++++++++++++++++---------------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/lmls.R | 34 +++++++++++++++++----------------- inst/doc/lmls.Rmd | 18 +++++++----------- inst/doc/lmls.pdf |binary man/figures/README-abdom-plot-1.png |binary vignettes/lmls.Rmd | 18 +++++++----------- 13 files changed, 79 insertions(+), 76 deletions(-)
Title: Latent Class Capture-Recapture Models
Description: Estimation of latent class models with individual covariates for capture-recapture data. See Bartolucci, F. and Forcina, A. (2022), Estimating the size of a closed population by modeling latent and observed heterogeneity, Biometrics, 80(2), ujae017.
Author: Francesco Bartolucci [aut, cre],
Antonio Forcina [aut]
Maintainer: Francesco Bartolucci <francesco.bartolucci@unipg.it>
Diff between LCCR versions 1.3 dated 2021-12-04 and 2.0 dated 2024-11-20
DESCRIPTION | 12 +- MD5 | 63 ++++++------ NAMESPACE | 4 R/aggr_data.R | 11 +- R/confint.estLCCR.R | 119 ++++++++++++++++------- R/confint.estLCCRcon.R |only R/design_matrix_logit.R | 49 +++++---- R/design_matrix_loglin.R | 30 +++-- R/estLCCR.R | 162 ++++++++++++++++++------------- R/estLCCRcon.R | 234 +++++++++++++++++++++++++++++----------------- R/freq_data.R | 10 + R/lkLCCR.R | 40 +++---- R/lkLCCRcon.R | 29 ++--- R/matrix_logit.R | 11 +- R/plot.confLCCR.R | 4 R/plot.confLCCRcon.R |only R/print.confLCCR.R | 4 R/print.confLCCRcon.R |only R/print.estLCCR.R | 6 - R/print.estLCCRcon.R | 8 - R/simLCCR.R | 35 +++--- R/sq.R | 7 - R/summary.confLCCR.R | 4 R/summary.confLCCRcon.R |only R/summary.estLCCR.R | 18 +-- R/summary.estLCCRcon.R | 20 +-- build/partial.rdb |binary man/confint.estLCCR.Rd | 17 ++- man/confint.estLCCRcon.Rd |only man/estLCCR.Rd | 18 +-- man/estLCCRcon.Rd | 20 ++- man/freq_data.Rd | 5 man/plot.Rd | 1 man/print.Rd | 1 man/simLCCR.Rd | 17 +-- 35 files changed, 582 insertions(+), 377 deletions(-)
Title: 'shiny' Application for Adverse Event Analysis of 'OnCore' Data
Description: An application for analysis of Adverse Events, as described in Chen, et al., (2023) <doi:10.3390/cancers15092521>.
The required data for the application includes demographics, follow up, adverse event, drug administration and optional tumor measurement data.
The app can produce swimmers plots of adverse events, Kaplan-Meier plots and Cox Proportional Hazards model results
for the association of adverse event biomarkers and overall survival and progression free survival.
The adverse event biomarkers include occurrence of grade 3, low grade (1-2), and treatment related adverse events.
Plots and tables of results are downloadable.
Author: Z Thompson [aut, cre],
A Obermayer [aut],
DT Chen [aut]
Maintainer: Z Thompson <zachary.thompson@moffitt.org>
Diff between AdverseEvents versions 0.0.3 dated 2024-11-04 and 0.0.4 dated 2024-11-20
DESCRIPTION | 7 +- MD5 | 11 ++-- README.md |only inst/app/server.R | 111 ++++++++++++++++++++++++++++++++++++++------ inst/doc/AdverseEvents.html | 4 - vignettes/correlations.PNG |binary vignettes/responsetests.PNG |binary 7 files changed, 110 insertions(+), 23 deletions(-)
Title: Calculate Sun Position, Sunrise, Sunset, Solar Noon and Twilight
Description: Provides a set of convenient functions for calculating sun-related information, including the sun's position (elevation and azimuth), and the times of sunrise, sunset, solar noon, and twilight for any given geographical location on Earth. These calculations are based on equations provided by the National Oceanic & Atmospheric Administration (NOAA) <https://gml.noaa.gov/grad/solcalc/calcdetails.html> as described in "Astronomical Algorithms" by Jean Meeus (1991, ISBN: 978-0-943396-35-4).
Author: Roger Bivand [aut] ,
Adriaan M. Dokter [ctb, cre] ,
Pieter Huybrechts [ctb] ,
Sebastian Luque [aut],
Greg Pelletier [ctb],
Alexander Tedeschi [ctb]
Maintainer: Adriaan M. Dokter <amd427@cornell.edu>
Diff between suntools versions 1.0.0 dated 2023-07-06 and 1.0.1 dated 2024-11-20
DESCRIPTION | 12 ++++++------ MD5 | 20 ++++++++++---------- NEWS.md | 8 +++++++- R/crepuscule.R | 2 +- R/solarnoon.R | 2 +- R/sunriset.R | 2 +- man/crepuscule.Rd | 2 +- man/solarnoon.Rd | 2 +- man/sunriset.Rd | 2 +- man/suntools-package.Rd | 2 +- tests/testthat/test-sun-methods.R | 12 ++++++------ 11 files changed, 36 insertions(+), 30 deletions(-)
Title: Interface for 'LaminDB'
Description: Interact with 'LaminDB'. 'LaminDB' is an open-source data
framework for biology. This package allows you to query and download
data from 'LaminDB' instances.
Author: Robrecht Cannoodt [aut, cre] ,
Luke Zappia [aut] ,
Data Intuitive [aut],
Lamin Labs [aut, cph]
Maintainer: Robrecht Cannoodt <robrecht@data-intuitive.com>
Diff between laminr versions 0.1.0 dated 2024-11-10 and 0.2.0 dated 2024-11-20
DESCRIPTION | 21 MD5 | 58 NAMESPACE | 6 R/Artifact.R | 18 R/Instance.R | 125 + R/InstanceAPI.R | 43 R/Record.R | 116 + R/Registry.R | 204 + R/connect.R | 26 R/core_loaders.R |only R/laminr-package.R | 6 R/settings_load.R | 11 R/utils.R | 39 README.md | 20 build/vignette.rds |binary inst/doc/architecture.R | 103 inst/doc/architecture.html | 2490 ++++++++++++++++++++++- inst/doc/architecture.qmd | 105 inst/doc/development.html | 288 ++ inst/doc/development.qmd | 38 man/Instance.Rd | 74 man/Record.Rd | 21 man/Registry.Rd | 118 + man/laminr-package.Rd | 8 tests/testthat/helper-setup_lamindata_instance.R | 2 tests/testthat/test-Artifact.R |only tests/testthat/test-core_loaders.R |only vignettes/architecture.qmd | 105 vignettes/cellxgene_basic.html |only vignettes/development.qmd | 38 vignettes/example_workflow.Rmd |only vignettes/example_workflow.html |only vignettes/laminr.Rmd | 10 33 files changed, 3673 insertions(+), 420 deletions(-)
More information about cellularautomata at CRAN
Permanent link
More information about sampledatasets at CRAN
Permanent link
Title: Growth Models
Description: A model for the growth of self-limiting populations using three, four, or five parameter
functions, which have wide applications in a variety of fields.
The dependent variable in a dynamical modeling could be the population size at time x,
where x is the independent variable. In the analysis of quantitative polymerase chain reaction
(qPCR), the dependent variable would be the fluorescence intensity and the independent variable
the cycle number. This package then would calculate the TWW cycle threshold.
Author: Mohammad Tabatabai [aut],
Derek Wilus [aut, cre]
Maintainer: Derek Wilus <dwilus@mmc.edu>
Diff between TWW versions 0.0.1 dated 2024-09-02 and 0.1.0 dated 2024-11-20
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/tww.R | 23 +++++++++++++++++------ man/tww.Rd | 15 +++++++++++---- 4 files changed, 34 insertions(+), 16 deletions(-)
Title: Exploration and Graphics for RivEr Trends
Description: Statistics and graphics for streamflow history,
water quality trends, and the statistical modeling algorithm: Weighted
Regressions on Time, Discharge, and Season (WRTDS).
Author: Robert Hirsch [aut] ,
Laura DeCicco [aut, cre] ,
Tim Cohn [ctb],
David Watkins [ctb],
Lindsay Carr [ctb],
Jennifer Murphy [aut]
Maintainer: Laura DeCicco <ldecicco@usgs.gov>
Diff between EGRET versions 3.0.9 dated 2023-04-18 and 3.0.10 dated 2024-11-20
EGRET-3.0.10/EGRET/DESCRIPTION | 8 EGRET-3.0.10/EGRET/MD5 | 146 - EGRET-3.0.10/EGRET/NAMESPACE | 23 EGRET-3.0.10/EGRET/NEWS | 9 EGRET-3.0.10/EGRET/R/EGRET.R | 37 EGRET-3.0.10/EGRET/R/blankTime.R | 35 EGRET-3.0.10/EGRET/R/boxConcMonth.R | 4 EGRET-3.0.10/EGRET/R/boxConcThree.R | 4 EGRET-3.0.10/EGRET/R/boxQTwice.R | 4 EGRET-3.0.10/EGRET/R/boxResidMonth.R | 6 EGRET-3.0.10/EGRET/R/calculateMonthlyResults.R | 20 EGRET-3.0.10/EGRET/R/compressData.r | 29 EGRET-3.0.10/EGRET/R/cumQdate.R | 4 EGRET-3.0.10/EGRET/R/errorStats.R | 2 EGRET-3.0.10/EGRET/R/estSurfaces.R | 2 EGRET-3.0.10/EGRET/R/genericEGRETplot.R | 6 EGRET-3.0.10/EGRET/R/kalman_functions.R | 4 EGRET-3.0.10/EGRET/R/makeAnnualSeries.R | 8 EGRET-3.0.10/EGRET/R/plot1of15.R | 2 EGRET-3.0.10/EGRET/R/plotConcQSmooth.R | 6 EGRET-3.0.10/EGRET/R/plotConcTimeSmooth.R | 6 EGRET-3.0.10/EGRET/R/plotContours.R | 24 EGRET-3.0.10/EGRET/R/plotDiffContours.R | 22 EGRET-3.0.10/EGRET/R/plotMonthTrend.R | 4 EGRET-3.0.10/EGRET/R/plotSDLogQ.R | 2 EGRET-3.0.10/EGRET/R/populateDaily.r | 2 EGRET-3.0.10/EGRET/R/populateSampleColumns.r | 7 EGRET-3.0.10/EGRET/R/printSeries.R | 2 EGRET-3.0.10/EGRET/R/processQWData.r | 9 EGRET-3.0.10/EGRET/R/readDataFromFile.r | 2 EGRET-3.0.10/EGRET/R/readMetaData.r | 4 EGRET-3.0.10/EGRET/R/readNWISSample.R |only EGRET-3.0.10/EGRET/R/readUserSample.r | 6 EGRET-3.0.10/EGRET/R/readWQPSample.R | 83 - EGRET-3.0.10/EGRET/R/runGroups.R | 2 EGRET-3.0.10/EGRET/R/runPairs.R | 4 EGRET-3.0.10/EGRET/R/runSurvReg.R | 10 EGRET-3.0.10/EGRET/R/setupYears.R | 4 EGRET-3.0.10/EGRET/R/stitch.R | 4 EGRET-3.0.10/EGRET/R/tableResults.R | 2 EGRET-3.0.10/EGRET/README.md | 143 - EGRET-3.0.10/EGRET/build/partial.rdb |binary EGRET-3.0.10/EGRET/build/vignette.rds |binary EGRET-3.0.10/EGRET/inst/CITATION | 4 EGRET-3.0.10/EGRET/inst/doc/EGRET.R | 540 +++---- EGRET-3.0.10/EGRET/inst/doc/EGRET.Rmd | 7 EGRET-3.0.10/EGRET/inst/doc/EGRET.html | 896 ++++++------ EGRET-3.0.10/EGRET/inst/doc/Overview.Rmd | 62 EGRET-3.0.10/EGRET/inst/doc/Overview.html | 247 +-- EGRET-3.0.10/EGRET/inst/doc/parallel.R | 78 - EGRET-3.0.10/EGRET/inst/doc/parallel.html | 80 - EGRET-3.0.10/EGRET/inst/doc/units.html | 130 - EGRET-3.0.10/EGRET/man/Constants.Rd | 8 EGRET-3.0.10/EGRET/man/EGRET-package.Rd | 14 EGRET-3.0.10/EGRET/man/blankTime.Rd | 10 EGRET-3.0.10/EGRET/man/boxConcMonth.Rd | 2 EGRET-3.0.10/EGRET/man/boxQTwice.Rd | 2 EGRET-3.0.10/EGRET/man/boxResidMonth.Rd | 2 EGRET-3.0.10/EGRET/man/cumQdate.Rd | 2 EGRET-3.0.10/EGRET/man/figures/README-plotFours-1.png |binary EGRET-3.0.10/EGRET/man/figures/README-plotFours-2.png |binary EGRET-3.0.10/EGRET/man/figures/README-unnamed-chunk-4-1.png |binary EGRET-3.0.10/EGRET/man/figures/README-unnamed-chunk-4-2.png |binary EGRET-3.0.10/EGRET/man/figures/README-unnamed-chunk-4-3.png |binary EGRET-3.0.10/EGRET/man/plotContours.Rd | 7 EGRET-3.0.10/EGRET/man/plotDiffContours.Rd | 6 EGRET-3.0.10/EGRET/man/processQWData.Rd | 4 EGRET-3.0.10/EGRET/man/readNWISSample.Rd | 7 EGRET-3.0.10/EGRET/man/readUserSample.Rd | 128 - EGRET-3.0.10/EGRET/tests/testthat/Rplots.pdf |binary EGRET-3.0.10/EGRET/tests/testthat/tests_imports.R | 35 EGRET-3.0.10/EGRET/tests/testthat/tests_utils.R | 6 EGRET-3.0.10/EGRET/vignettes/EGRET.Rmd | 7 EGRET-3.0.10/EGRET/vignettes/Overview.Rmd | 62 EGRET-3.0.9/EGRET/R/readNWISSample.r |only 75 files changed, 1510 insertions(+), 1537 deletions(-)
Title: Categorical Functional Data Analysis
Description: Package for the analysis of categorical functional data.
The main purpose is to compute an encoding (real functional variable) for each state <doi:10.3390/math9233074>.
It also provides functions to perform basic statistical analysis on categorical functional data.
Author: Cristian Preda [aut],
Quentin Grimonprez [aut, cre],
Vincent Vandewalle [ctb]
Maintainer: Quentin Grimonprez <quentingrim@yahoo.fr>
Diff between cfda versions 0.11.0 dated 2023-10-07 and 0.12.0 dated 2024-11-20
DESCRIPTION | 12 MD5 | 97 ++-- NAMESPACE | 6 NEWS | 10 R/cfda-package.R | 11 R/check.R | 64 ++- R/dataPlot.R | 27 - R/datasets.R | 6 R/encoding.R | 52 +- R/estimation.R | 10 R/fmca.print.R | 8 R/generateData.R | 18 R/plotEncoding.R | 44 -- R/predict.R | 11 R/pretreatment.R | 62 +- R/reconstructData.R |only R/stat.R | 66 +-- R/zzz.R | 5 build/vignette.rds |binary inst/doc/cfda.R | 20 inst/doc/cfda.Rmd | 45 +- inst/doc/cfda.html | 506 ++++++++++++++---------- man/boxplot.timeSpent.Rd | 2 man/cfda-package.Rd | 21 man/compute_duration.Rd | 2 man/compute_number_jumps.Rd | 2 man/compute_optimal_encoding.Rd | 6 man/compute_time_spent.Rd | 2 man/convertToCfd.Rd | 20 man/estimate_Markov.Rd | 2 man/estimate_pt.Rd | 6 man/flours.Rd | 6 man/hist.duration.Rd | 2 man/hist.njump.Rd | 2 man/matrixToCfd.Rd | 13 man/plot.fmca.Rd | 2 man/plot.pt.Rd | 2 man/plotComponent.Rd | 1 man/plotEigenvalues.Rd | 1 man/plotIndicatorsReconstruction.Rd |only man/predict.fmca.Rd | 2 man/print.fmca.Rd | 2 man/reconstructIndicators.Rd |only man/summary.fmca.Rd | 2 tests/testthat/test.bootstrap.R | 3 tests/testthat/test.check.R | 74 +++ tests/testthat/test.encoding.R | 66 +-- tests/testthat/test.encoding0columnManagement.R | 2 tests/testthat/test.generate.R | 16 tests/testthat/test.stat.R | 56 +- vignettes/cfda.Rmd | 45 +- 51 files changed, 937 insertions(+), 503 deletions(-)
Title: Visualizing and Analyzing Animal Track Data
Description: Contains functions to access movement data stored in 'movebank.org'
as well as tools to visualize and statistically analyze animal movement data,
among others functions to calculate dynamic Brownian Bridge Movement Models.
Move helps addressing movement ecology questions.
Author: Bart Kranstauber [aut, cre],
Marco Smolla [aut],
Anne K Scharf [aut]
Maintainer: Bart Kranstauber <b.kranstauber@uva.nl>
Diff between move versions 4.2.5 dated 2024-09-29 and 4.2.6 dated 2024-11-20
ChangeLog | 4 DESCRIPTION | 6 MD5 | 10 inst/doc/browseMovebank.html | 753 ++++++++----- inst/doc/move.html | 1418 ++++++++++++++++---------- tests/testthat/test.getDuplicatedTimestamps.R | 2 6 files changed, 1361 insertions(+), 832 deletions(-)
Title: High Dimensional Categorical Data Visualization
Description: Easy visualization for datasets with more than two categorical variables and additional continuous variables. 'diceplot' is particularly useful for exploring complex categorical data in the context of pathway analysis across multiple conditions. For a detailed documentation please visit <https://dice-and-domino-plot.readthedocs.io/en/latest/>.
Author: Matthias Flotho [aut, cre]
Maintainer: Matthias Flotho <matthias.flotho@ccb.uni-saarland.de>
Diff between diceplot versions 0.1.3 dated 2024-11-05 and 0.1.4 dated 2024-11-20
DESCRIPTION | 6 +-- MD5 | 10 +++--- R/diceplot.R | 63 ++++++++++++++++++++++++++------------- man/dice_plot.Rd | 11 ++++++ tests/factor_df_test.R |only tests/test_diceplots.R | 3 + tests/test_reordering_diceplot.R |only 7 files changed, 63 insertions(+), 30 deletions(-)
Title: A Toolkit for Year-Quarter, Year-Month and Year-Isoweek Dates
Description: S3 classes and methods to create and work
with year-quarter, year-month and year-isoweek vectors. Basic
arithmetic operations (such as adding and subtracting) are supported,
as well as formatting and converting to and from standard R date
types.
Author: Stefan Fleck [aut, cre]
Maintainer: Stefan Fleck <stefan.b.fleck@gmail.com>
Diff between dint versions 2.1.4 dated 2022-10-17 and 2.1.5 dated 2024-11-20
DESCRIPTION | 8 MD5 | 102 ++-- NAMESPACE | 13 NEWS.md | 8 R/arithmetic.R | 5 R/format.R | 1 R/increment.R | 11 R/scale_date_xx.R | 132 ++++-- R/zoo-compat.R | 6 README.md | 6 build/vignette.rds |binary inst/doc/dint.R | 4 inst/doc/dint.html | 529 ++++++++++++------------- man/Ops.date_xx.Rd | 54 +- man/Summary.date_xx.Rd | 50 +- man/as.Date.date_xx.Rd | 130 +++--- man/as_yearqtr.Rd | 126 ++--- man/c.date_xx.Rd | 52 +- man/date_xx.Rd | 98 ++-- man/date_xx_arithmetic.Rd | 76 +-- man/date_xx_arithmetic_disabled.Rd | 76 +-- man/date_xx_breaks.Rd | 64 +-- man/date_xx_sequences.Rd | 60 +- man/date_y.Rd | 86 ++-- man/date_ym.Rd | 96 ++-- man/date_yq.Rd | 96 ++-- man/date_yw.Rd | 96 ++-- man/day_of_isoweek.Rd | 102 ++-- man/day_of_isoyear.Rd | 80 +-- man/day_of_month.Rd | 110 ++--- man/day_of_quarter.Rd | 62 +- man/day_of_year.Rd | 94 ++-- man/dint-package.Rd | 49 +- man/extract_date_xx.Rd | 183 ++++---- man/first_of_yq.Rd | 88 ++-- man/format_date_xx.Rd | 212 +++++----- man/format_ym.Rd | 122 ++--- man/format_yq.Rd | 122 ++--- man/format_yw.Rd | 119 ++--- man/getters.Rd | 130 +++--- man/increment.Rd |only man/period_bounds.Rd | 98 ++-- man/print.date_xx.Rd | 36 - man/rep.date_xx.Rd | 36 - man/round_date_xx.Rd | 80 +-- man/scale_date_xx.Rd | 269 ++++++------ man/y-plus.Rd | 98 ++-- man/year.Rd | 92 ++-- man/yq.Rd | 78 +-- tests/testthat/manual_tests/ggplot_scales.html |only tests/testthat/test_date_xx.R | 6 tests/testthat/test_first_of.R | 12 tests/testthat/test_scale_date_xx.R | 5 53 files changed, 2170 insertions(+), 2098 deletions(-)
Title: Methods for Analysing 'EQ-5D' Data and Calculating 'EQ-5D' Index
Scores
Description: EQ-5D is a popular health related quality of life instrument used
in the clinical and economic evaluation of health care. Developed by the
EuroQol group <https://euroqol.org/>, the instrument consists of two
components: health state description and evaluation. For the description
component a subject self-rates their health in terms of five dimensions;
mobility, self-care, usual activities, pain/discomfort, and
anxiety/depression using either a three-level (EQ-5D-3L,
<https://euroqol.org/information-and-support/euroqol-instruments/eq-5d-3l/>) or a five-level
(EQ-5D-5L, <https://euroqol.org/information-and-support/euroqol-instruments/eq-5d-5l/>)
scale. Frequently the scores on these five dimensions are converted to a
single utility index using country specific value sets, which can be used
in the clinical and economic evaluation of health care as well as in
population health surveys. The eq5d package provides methods to calculate
index scores from a subject's dimension [...truncated...]
Author: Fraser Morton [aut, cre],
Jagtar Singh Nijjar [aut]
Maintainer: Fraser Morton <fraser.morton@glasgow.ac.uk>
Diff between eq5d versions 0.15.4 dated 2024-09-04 and 0.15.5 dated 2024-11-20
DESCRIPTION | 12 +- MD5 | 34 +++---- NEWS.md | 6 + R/data.R | 194 +++++++++++++++++++++---------------------- R/sysdata.rda |binary inst/doc/eq5d.R | 2 inst/doc/eq5d.html | 59 +++++-------- man/CW.Rd | 16 +-- man/DSU3L.Rd | 4 man/DSU5L.Rd | 4 man/TTO.Rd | 63 +++++++------ man/VAS.Rd | 8 - man/VT.Rd | 85 +++++++++--------- man/Y3L.Rd | 20 ++-- man/eq5d-package.Rd | 2 tests/testthat/test-eq5d3l.R | 8 + tests/testthat/test-eq5d5l.R | 10 ++ tests/testthat/test-eq5dcw.R | 11 ++ 18 files changed, 287 insertions(+), 251 deletions(-)
Title: Comparing Two Diagnostic Tests with Dichotomous Results using
Paired Data
Description: Provides a method for comparing the results of two binary diagnostic tests using paired data.
Users can rapidly perform descriptive and inferential statistics in a single function call. Options permit users to select which parameters they are interested in comparing and methods for correction for multiple comparisons.
Confidence intervals are calculated using the methods with the best coverage. Hypothesis tests use the methods with the best asymptotic performance. A summary of the methods is available in Roldán-Nofuentes (2020) <doi:10.1186/s12874-020-00988-y>.
This package is targeted at clinical researchers who want to rapidly and effectively compare results from binary diagnostic tests.
Author: Kyle J. Wilson [cre, aut] ,
Marc Henrion [aut] ,
Jose Antonio Roldan Nofuentes [aut]
Maintainer: Kyle J. Wilson <kyle.jordan.wilson@googlemail.com>
Diff between testCompareR versions 1.1.0 dated 2024-10-02 and 1.1.1 dated 2024-11-20
DESCRIPTION | 6 +++--- MD5 | 11 ++++++----- NEWS.md | 8 ++++++++ R/compareR.R | 7 +++++++ README.md | 4 +++- inst/CITATION |only man/compareR.Rd | 4 ++++ 7 files changed, 31 insertions(+), 9 deletions(-)
Title: Fast Numerical Maximum Likelihood Estimation for Latent Markov
Models
Description: A variety of latent Markov models, including hidden Markov models, hidden semi-Markov models,
state-space models and continuous-time variants can be formulated and estimated within the same framework via directly maximising the likelihood function using the so-called forward algorithm.
Applied researchers often need custom models that standard software does not easily support.
Writing tailored 'R' code offers flexibility but suffers from slow estimation speeds.
We address these issues by providing easy-to-use functions (written in 'C++' for speed) for common tasks like the forward algorithm.
These functions can be combined into custom models in a Lego-type approach, offering up to 10-20 times faster estimation via standard numerical optimisers.
To aid in building fully custom likelihood functions, several vignettes are included that show how to simulate data from and estimate all the above model classes.
Author: Jan-Ole Koslik [aut, cre]
Maintainer: Jan-Ole Koslik <jan-ole.koslik@uni-bielefeld.de>
Diff between LaMa versions 2.0.1 dated 2024-11-13 and 2.0.2 dated 2024-11-20
LaMa-2.0.1/LaMa/vignettes/HSMMs_cache/html/model_muskox_77fd183fbf3a0b18e8b2fde0ac87056d.RData |only LaMa-2.0.1/LaMa/vignettes/HSMMs_cache/html/model_muskox_77fd183fbf3a0b18e8b2fde0ac87056d.rdb |only LaMa-2.0.1/LaMa/vignettes/HSMMs_cache/html/model_muskox_77fd183fbf3a0b18e8b2fde0ac87056d.rdx |only LaMa-2.0.1/LaMa/vignettes/Longitudinal_data_cache/html/model_pool_278dc24685c286b1974a9aec6899b982.RData |only LaMa-2.0.1/LaMa/vignettes/Longitudinal_data_cache/html/model_pool_278dc24685c286b1974a9aec6899b982.rdb |only LaMa-2.0.1/LaMa/vignettes/Longitudinal_data_cache/html/model_pool_278dc24685c286b1974a9aec6899b982.rdx |only LaMa-2.0.1/LaMa/vignettes/State_space_models_cache/html/model_a83c08ae12caff79d6f80b66561349bf.RData |only LaMa-2.0.1/LaMa/vignettes/State_space_models_cache/html/model_a83c08ae12caff79d6f80b66561349bf.rdb |only LaMa-2.0.1/LaMa/vignettes/State_space_models_cache/html/model_a83c08ae12caff79d6f80b66561349bf.rdx |only LaMa-2.0.2/LaMa/DESCRIPTION | 6 - LaMa-2.0.2/LaMa/MD5 | 46 +++++----- LaMa-2.0.2/LaMa/R/decoding_functions.R | 32 ++++-- LaMa-2.0.2/LaMa/README.md | 6 - LaMa-2.0.2/LaMa/inst/doc/Continuous_time_HMMs.html | 4 LaMa-2.0.2/LaMa/inst/doc/HSMMs.html | 4 LaMa-2.0.2/LaMa/inst/doc/Inhomogeneous_HMMs.html | 4 LaMa-2.0.2/LaMa/inst/doc/Intro_to_LaMa.html | 2 LaMa-2.0.2/LaMa/inst/doc/Longitudinal_data.html | 6 - LaMa-2.0.2/LaMa/inst/doc/MMMPPs.html | 4 LaMa-2.0.2/LaMa/inst/doc/Penalised_splines.html | 6 - LaMa-2.0.2/LaMa/inst/doc/Periodic_HMMs.html | 2 LaMa-2.0.2/LaMa/inst/doc/State_space_models.Rmd | 2 LaMa-2.0.2/LaMa/inst/doc/State_space_models.html | 12 +- LaMa-2.0.2/LaMa/vignettes/HSMMs_cache/html/model_muskox_bc79f9de982e1ba8aa0670dd63a810ff.RData |only LaMa-2.0.2/LaMa/vignettes/HSMMs_cache/html/model_muskox_bc79f9de982e1ba8aa0670dd63a810ff.rdb |only LaMa-2.0.2/LaMa/vignettes/HSMMs_cache/html/model_muskox_bc79f9de982e1ba8aa0670dd63a810ff.rdx |only LaMa-2.0.2/LaMa/vignettes/Longitudinal_data_cache/html/model_pool_69f7c62b62ac06046ca6f4be3205495c.RData |only LaMa-2.0.2/LaMa/vignettes/Longitudinal_data_cache/html/model_pool_69f7c62b62ac06046ca6f4be3205495c.rdb |only LaMa-2.0.2/LaMa/vignettes/Longitudinal_data_cache/html/model_pool_69f7c62b62ac06046ca6f4be3205495c.rdx |only LaMa-2.0.2/LaMa/vignettes/State_space_models.Rmd | 2 LaMa-2.0.2/LaMa/vignettes/State_space_models_cache/html/model_1cac96c46f5385620f13ae0141907771.RData |only LaMa-2.0.2/LaMa/vignettes/State_space_models_cache/html/model_1cac96c46f5385620f13ae0141907771.rdb |only LaMa-2.0.2/LaMa/vignettes/State_space_models_cache/html/model_1cac96c46f5385620f13ae0141907771.rdx |only 33 files changed, 75 insertions(+), 63 deletions(-)
Title: Geographical Detectors for Assessing Spatial Factors
Description: Geographical detectors for measuring spatial stratified heterogeneity,
as described in Jinfeng Wang (2010) <doi:10.1080/13658810802443457> and
Jinfeng Wang (2016) <doi:10.1016/j.ecolind.2016.02.052>. Includes the
optimal discretization of continuous data, four primary functions of
geographical detectors, comparison of size effects of spatial unit and
the visualizations of results. To use the package and to refer the
descriptions of the package, methods and case datasets, please cite
Yongze Song (2020) <doi:10.1080/15481603.2020.1760434>. The model has
been applied in factor exploration of road performance and multi-scale
spatial segmentation for network data, as described in
Yongze Song (2018) <doi:10.3390/rs10111696> and
Yongze Song (2020) <doi:10.1109/TITS.2020.3001193>, respectively.
Author: Yongze Song [aut, cph] ,
Wenbo Lv [aut, cre]
Maintainer: Wenbo Lv <lyu.geosocial@gmail.com>
Diff between GD versions 10.6 dated 2024-10-30 and 10.8 dated 2024-11-20
DESCRIPTION | 8 - MD5 | 14 +-- NEWS.md | 18 ++- R/zzz.R | 2 README.md | 6 - build/vignette.rds |binary inst/doc/GD.R | 244 ++++++++++++++++++++++++++--------------------------- inst/doc/GD.html | 6 - 8 files changed, 151 insertions(+), 147 deletions(-)
Title: Calculate and Visualize 'SNOTEL' Snow Data and Seasonality
Description: Programmatic interface to the 'SNOTEL' snow data
(<https://www.nrcs.usda.gov/programs-initiatives/sswsf-snow-survey-and-water-supply-forecasting-program>). Provides easy downloads of snow
data into your R work space or a local directory. Additional post-processing
routines to extract snow season indexes are provided.
Author: Koen Hufkens [aut, cre] ,
BlueGreen Labs [cph, fnd]
Maintainer: Koen Hufkens <koen.hufkens@gmail.com>
Diff between snotelr versions 1.5.1 dated 2024-10-02 and 1.5.2 dated 2024-11-20
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/snotel_download.r | 9 +++++++-- R/snotel_metric.r | 3 +++ build/vignette.rds |binary inst/doc/snotelr-vignette.html | 4 ++-- man/snotel_download.Rd | 11 ++++++++++- 7 files changed, 32 insertions(+), 15 deletions(-)
Title: Permanent Random Number Sampling
Description: Survey sampling using permanent random numbers (PRN's). A solution
to the problem of unknown overlap between survey samples, which leads to a
low precision in estimates when the survey is repeated or combined with
other surveys. The PRN solution is to supply the U(0, 1) random numbers to
the sampling procedure, instead of having the sampling procedure generate
them. In Lindblom (2014) <doi:10.2478/jos-2014-0047>, and therein cited
papers, it is shown how this is carried out and how it improves the
estimates. This package supports two common fixed-size sampling procedures
(simple random sampling and probability-proportional-to-size sampling) and
includes a function for transforming the PRN's in order to control the
sample overlap.
Author: Kira Coder Gylling [aut, cre]
Maintainer: Kira Coder Gylling <kira.gylling@gmail.com>
Diff between prnsamplr versions 0.3.0 dated 2023-03-08 and 1.0.0 dated 2024-11-20
prnsamplr-0.3.0/prnsamplr/NEWS.md |only prnsamplr-0.3.0/prnsamplr/R/transf.R |only prnsamplr-0.3.0/prnsamplr/README.md |only prnsamplr-0.3.0/prnsamplr/build |only prnsamplr-0.3.0/prnsamplr/data/ExampleData.RData |only prnsamplr-1.0.0/prnsamplr/DESCRIPTION | 42 ++-- prnsamplr-1.0.0/prnsamplr/LICENSE | 2 prnsamplr-1.0.0/prnsamplr/MD5 | 38 ++-- prnsamplr-1.0.0/prnsamplr/NAMESPACE | 25 +- prnsamplr-1.0.0/prnsamplr/R/data.R |only prnsamplr-1.0.0/prnsamplr/R/pps.R | 198 +++++++++++++-------- prnsamplr-1.0.0/prnsamplr/R/prnsamplr-package.R |only prnsamplr-1.0.0/prnsamplr/R/samp.R | 58 ++++-- prnsamplr-1.0.0/prnsamplr/R/srs.R | 131 +++++++++---- prnsamplr-1.0.0/prnsamplr/R/transformprn.R |only prnsamplr-1.0.0/prnsamplr/data/ExampleData.rda |only prnsamplr-1.0.0/prnsamplr/man/ExampleData.Rd | 40 ++-- prnsamplr-1.0.0/prnsamplr/man/pps.Rd | 60 +++--- prnsamplr-1.0.0/prnsamplr/man/prnsamplr-package.Rd | 110 +++++++---- prnsamplr-1.0.0/prnsamplr/man/samp.Rd | 91 +++++---- prnsamplr-1.0.0/prnsamplr/man/srs.Rd | 52 ++--- prnsamplr-1.0.0/prnsamplr/man/transformprn.Rd | 60 +++--- prnsamplr-1.0.0/prnsamplr/tests |only 23 files changed, 563 insertions(+), 344 deletions(-)
Title: Year-Based Time Scales
Description: Provides a consistent representation of year-based time scales as a
numeric vector with an associated 'era'. There are built-in era definitions
for many year numbering systems used in contemporary and historic calendars
(e.g. Common Era, Islamic 'Hijri' years); year-based time scales used in
archaeology, astronomy, geology, and other palaeosciences (e.g.
Before Present, SI-prefixed 'annus'); and support for arbitrary user-defined
eras. Years can converted from any one era to another using a generalised
transformation function. Methods are also provided for robust casting and
coercion between years and other numeric types, type-stable arithmetic with
years, and pretty-printing in tables.
Author: Joe Roe [aut, cre]
Maintainer: Joe Roe <joe@joeroe.io>
Diff between era versions 0.4.1 dated 2022-11-17 and 0.5.0 dated 2024-11-20
DESCRIPTION | 8 MD5 | 40 ++-- NAMESPACE | 4 NEWS.md | 5 R/yr_sort_range.R |only README.md | 20 +- build/vignette.rds |binary inst/WORDLIST | 4 inst/doc/era.R | 2 inst/doc/era.html | 294 ++++++++++++++++++------------------ man/era.Rd | 4 man/era_parameters.Rd | 6 man/era_year.Rd | 4 man/era_year_parameters.Rd | 4 man/is_era.Rd | 4 man/is_era_year.Rd | 4 man/is_yr.Rd | 6 man/this_year.Rd | 6 man/yr_era.Rd | 4 man/yr_extremes.Rd |only man/yr_sort.Rd |only man/yr_transform.Rd | 4 tests/testthat/test-yr_sort_range.R |only 23 files changed, 218 insertions(+), 205 deletions(-)
Title: Vaccines Pharmacometrics
Description: Estimate vaccine efficacy (VE) using immunogenicity data.
The inclusion of immunogenicity data in regression models can increase precision in VE.
The methods are described in the publications "Elucidating vaccine efficacy using a correlate of protection, demographics, and logistic regression" and "Improving precision of vaccine efficacy evaluation using immune correlate data in time-to-event models" by Julie Dudasova, Zdenek Valenta, and Jeffrey R. Sachs (2024).
Author: Julie Dudasova [aut, cre]
Maintainer: Julie Dudasova (MSD) <julie.dudasova@merck.com>
Diff between vaxpmx versions 0.0.3 dated 2024-02-28 and 0.0.6 dated 2024-11-20
DESCRIPTION | 14 +++--- LICENSE.note | 3 - MD5 | 31 +++++++------- NAMESPACE | 1 NEWS.md | 11 +++-- R/data.R | 1 R/ve.R | 85 +++++++++++++++++++++++++++++++++++---- README.md | 17 ++++++- data/data_temp.rda |binary inst/extdata/vaxpmx_mockupData.R | 5 +- man/EfficacyCI.Rd | 2 man/coxphParametricSampling.Rd |only man/data_temp.Rd | 1 man/glmParametricSampling.Rd | 2 man/ve.Rd | 14 +++++- tests/testthat.R | 1 tests/testthat/testve.R | 24 ++++++++++- 17 files changed, 169 insertions(+), 43 deletions(-)
More information about Certara.RsNLME at CRAN
Permanent link
Title: Grouped Date Classes
Description: Provides a coherent interface and implementation for creating
grouped date classes. This package is part of the RECON
(<https://www.repidemicsconsortium.org/>) toolkit for outbreak analysis.
Author: Tim Taylor [aut, cre]
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>
Diff between grates versions 1.2.2 dated 2024-08-29 and 1.3.0 dated 2024-11-20
grates-1.2.2/grates/R/defunct.R |only grates-1.2.2/grates/man/grates-defunct.Rd |only grates-1.3.0/grates/DESCRIPTION | 6 grates-1.3.0/grates/MD5 | 31 ++-- grates-1.3.0/grates/NAMESPACE | 33 ++++ grates-1.3.0/grates/NEWS.md | 6 grates-1.3.0/grates/R/accessors.R | 7 grates-1.3.0/grates/R/int_period.R |only grates-1.3.0/grates/R/month.R | 4 grates-1.3.0/grates/R/scale-int_period.R |only grates-1.3.0/grates/build/vignette.rds |binary grates-1.3.0/grates/inst/doc/grates.html | 74 +++------- grates-1.3.0/grates/man/as_int_period.Rd |only grates-1.3.0/grates/man/grouped_date_accessors.Rd | 3 grates-1.3.0/grates/man/new_int_period.Rd |only grates-1.3.0/grates/man/print.grates_int_period.Rd |only grates-1.3.0/grates/man/scale_x_grates_int_period.Rd |only grates-1.3.0/grates/tests/testthat/_snaps/plots/p_breaks.png |only grates-1.3.0/grates/tests/testthat/_snaps/plots/p_breaks_centred.png |only grates-1.3.0/grates/tests/testthat/_snaps/plots/p_one.png |only grates-1.3.0/grates/tests/testthat/_snaps/plots/p_two.png |only grates-1.3.0/grates/tests/testthat/test-int_period.R |only grates-1.3.0/grates/tests/testthat/test-plots.R | 60 +++++++- 23 files changed, 152 insertions(+), 72 deletions(-)
Title: Command Line Optional and Positional Argument Parser
Description: A command line parser to
be used with 'Rscript' to write "#!" shebang scripts that gracefully
accept positional and optional arguments and automatically generate usage.
Author: Trevor L. Davis [aut, cre] ,
Allen Day [ctb] ,
Python Software Foundation [ctb] ,
Paul Newell [ctb]
Maintainer: Trevor L. Davis <trevor.l.davis@gmail.com>
Diff between argparse versions 2.2.3 dated 2024-04-09 and 2.2.4 dated 2024-11-20
DESCRIPTION | 17 +++++++++-------- MD5 | 15 ++++++++------- NEWS.md | 5 +++++ R/argparse.R | 23 ++++++++++++----------- R/utils.R |only build/vignette.rds |binary inst/doc/argparse.html | 38 +++++++++++++++++++------------------- man/ArgumentParser.Rd | 22 +++++++++++----------- tests/testthat/test-argparse.R | 11 +++++++++++ 9 files changed, 75 insertions(+), 56 deletions(-)
Title: Dynamic Function-Oriented 'Make'-Like Declarative Pipelines
Description: Pipeline tools coordinate the pieces of computationally
demanding analysis projects.
The 'targets' package is a 'Make'-like pipeline tool for statistics and
data science in R. The package skips costly runtime for tasks
that are already up to date,
orchestrates the necessary computation with implicit parallel computing,
and abstracts files as R objects. If all the current output matches
the current upstream code and data, then the whole pipeline is up
to date, and the results are more trustworthy than otherwise.
The methodology in this package
borrows from GNU 'Make' (2015, ISBN:978-9881443519)
and 'drake' (2018, <doi:10.21105/joss.00550>).
Author: William Michael Landau [aut, cre]
,
Matthew T. Warkentin [ctb],
Mark Edmondson [ctb] ,
Samantha Oliver [rev] ,
Tristan Mahr [rev] ,
Eli Lilly and Company [cph, fnd]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between targets versions 1.8.0 dated 2024-10-02 and 1.9.0 dated 2024-11-20
targets-1.8.0/targets/R/class_memory.R |only targets-1.8.0/targets/R/class_pedigree.R |only targets-1.8.0/targets/tests/testthat/test-class_memory.R |only targets-1.8.0/targets/tests/testthat/test-class_pedigree.R |only targets-1.9.0/targets/DESCRIPTION | 34 targets-1.9.0/targets/LICENSE.note |only targets-1.9.0/targets/MD5 | 424 +++++----- targets-1.9.0/targets/NAMESPACE | 15 targets-1.9.0/targets/NEWS.md | 30 targets-1.9.0/targets/R/class_active.R | 19 targets-1.9.0/targets/R/class_auto.R | 4 targets-1.9.0/targets/R/class_aws.R | 46 - targets-1.9.0/targets/R/class_aws_file.R | 22 targets-1.9.0/targets/R/class_branch.R | 94 +- targets-1.9.0/targets/R/class_bud.R | 59 - targets-1.9.0/targets/R/class_build.R | 7 targets-1.9.0/targets/R/class_builder.R | 173 ++-- targets-1.9.0/targets/R/class_cloud.R | 23 targets-1.9.0/targets/R/class_clustermq.R | 14 targets-1.9.0/targets/R/class_command.R | 44 - targets-1.9.0/targets/R/class_counter.R | 15 targets-1.9.0/targets/R/class_crew.R | 14 targets-1.9.0/targets/R/class_cue.R | 31 targets-1.9.0/targets/R/class_database.R | 40 targets-1.9.0/targets/R/class_database_aws.R | 4 targets-1.9.0/targets/R/class_database_gcp.R | 4 targets-1.9.0/targets/R/class_database_local.R | 4 targets-1.9.0/targets/R/class_external.R | 4 targets-1.9.0/targets/R/class_feather.R | 4 targets-1.9.0/targets/R/class_file.R | 27 targets-1.9.0/targets/R/class_frames.R | 27 targets-1.9.0/targets/R/class_fst.R | 4 targets-1.9.0/targets/R/class_fst_dt.R | 4 targets-1.9.0/targets/R/class_fst_tbl.R | 4 targets-1.9.0/targets/R/class_future.R | 27 targets-1.9.0/targets/R/class_gcp.R | 46 - targets-1.9.0/targets/R/class_gcp_file.R | 22 targets-1.9.0/targets/R/class_group.R | 6 targets-1.9.0/targets/R/class_imports.R | 4 targets-1.9.0/targets/R/class_inspection.R | 12 targets-1.9.0/targets/R/class_inventory.R | 18 targets-1.9.0/targets/R/class_inventory_aws.R | 16 targets-1.9.0/targets/R/class_inventory_gcp.R | 16 targets-1.9.0/targets/R/class_junction.R | 60 - targets-1.9.0/targets/R/class_keras.R | 4 targets-1.9.0/targets/R/class_list.R | 6 targets-1.9.0/targets/R/class_local.R | 6 targets-1.9.0/targets/R/class_lookup.R |only targets-1.9.0/targets/R/class_meta.R | 40 targets-1.9.0/targets/R/class_metrics.R | 27 targets-1.9.0/targets/R/class_null.R | 4 targets-1.9.0/targets/R/class_options.R | 13 targets-1.9.0/targets/R/class_outdated.R | 3 targets-1.9.0/targets/R/class_parquet.R | 4 targets-1.9.0/targets/R/class_passive.R | 2 targets-1.9.0/targets/R/class_pattern.R | 139 ++- targets-1.9.0/targets/R/class_patternview.R | 10 targets-1.9.0/targets/R/class_pipeline.R | 122 ++ targets-1.9.0/targets/R/class_prelocal.R | 4 targets-1.9.0/targets/R/class_process.R | 10 targets-1.9.0/targets/R/class_progress.R | 58 - 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targets-1.9.0/targets/tests/testthat/test-class_counter.R | 9 targets-1.9.0/targets/tests/testthat/test-class_crew.R | 63 - targets-1.9.0/targets/tests/testthat/test-class_cue.R | 10 targets-1.9.0/targets/tests/testthat/test-class_database.R | 22 targets-1.9.0/targets/tests/testthat/test-class_feather.R | 12 targets-1.9.0/targets/tests/testthat/test-class_frames.R | 56 - targets-1.9.0/targets/tests/testthat/test-class_fst.R | 12 targets-1.9.0/targets/tests/testthat/test-class_fst_dt.R | 12 targets-1.9.0/targets/tests/testthat/test-class_fst_tbl.R | 14 targets-1.9.0/targets/tests/testthat/test-class_future.R | 2 targets-1.9.0/targets/tests/testthat/test-class_gcp.R | 10 targets-1.9.0/targets/tests/testthat/test-class_gcp_file.R | 10 targets-1.9.0/targets/tests/testthat/test-class_imports.R | 6 targets-1.9.0/targets/tests/testthat/test-class_junction.R | 62 - targets-1.9.0/targets/tests/testthat/test-class_keras.R | 8 targets-1.9.0/targets/tests/testthat/test-class_lookup.R |only targets-1.9.0/targets/tests/testthat/test-class_meta.R | 6 targets-1.9.0/targets/tests/testthat/test-class_options.R | 29 targets-1.9.0/targets/tests/testthat/test-class_parquet.R | 12 targets-1.9.0/targets/tests/testthat/test-class_pattern.R | 2 targets-1.9.0/targets/tests/testthat/test-class_pipeline.R | 83 + targets-1.9.0/targets/tests/testthat/test-class_progress.R | 26 targets-1.9.0/targets/tests/testthat/test-class_qs.R | 46 - 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Title: Explore Your Data with Interactive Figures
Description: A framework for creating interactive figures for data exploration.
All plots are automatically linked and support several kinds of interactive features,
including selection, zooming, panning, and parameter manipulation. The figures
can be interacted with either manually, using a mouse and a keyboard,
or by running code from inside an active R session.
Author: Adam Bartonicek [aut, cre, cph]
Maintainer: Adam Bartonicek <bartonicek@gmail.com>
Diff between plotscaper versions 0.2.3 dated 2024-10-18 and 0.2.4 dated 2024-11-20
DESCRIPTION | 10 +- MD5 | 34 +++---- NEWS.md | 4 R/message_senders.R | 11 +- inst/doc/algebra.html | 12 +- inst/doc/available-interactions.R | 6 + inst/doc/available-interactions.Rmd | 9 + inst/doc/available-interactions.html | 124 ++++++++++++++------------- inst/doc/layout.html | 16 +-- inst/doc/performance.html | 8 - inst/doc/plotscaper.R | 3 inst/doc/plotscaper.Rmd | 3 inst/doc/plotscaper.html | 39 ++++---- inst/htmlwidgets/plotscape/main.iife.js | 4 man/figures/readme1.pngunnamed-chunk-3-1.png |binary man/set_scale.Rd | 3 vignettes/available-interactions.Rmd | 9 + vignettes/plotscaper.Rmd | 3 18 files changed, 177 insertions(+), 121 deletions(-)
Title: Natural Language Processing Infrastructure
Description: Basic classes and methods for Natural Language Processing.
Author: Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between NLP versions 0.3-1 dated 2024-11-13 and 0.3-2 dated 2024-11-20
DESCRIPTION | 6 +-- MD5 | 6 +-- R/language.R | 86 ++++++++++++++++++++++++++++---------------------------- man/language.Rd | 4 +- 4 files changed, 53 insertions(+), 49 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-12-15 1.0.1
2020-12-09 1.0.0
2020-11-25 0.0.1
Title: Tide Heights
Description: Calculates tide heights based on tide station harmonics. It
includes the harmonics data for 637 US stations. The harmonics data
was converted from
<https://github.com/poissonconsulting/rtide/blob/main/data-raw/harmonics-dwf-20151227-free.tar.bz2>,
NOAA web site data processed by David Flater for 'XTide'. The code to
calculate tide heights from the harmonics is based on 'XTide'.
Author: Joe Thorley [aut] ,
Luke Miller [aut, cre],
Abram Fleishman [aut],
Poisson Consulting [cph]
Maintainer: Luke Miller <contact@lukemiller.org>
Diff between rtide versions 0.0.10 dated 2024-08-19 and 0.0.11 dated 2024-11-20
DESCRIPTION | 11 +++++------ MD5 | 14 +++++++------- NEWS.md | 6 ++++++ R/tide-height.R | 2 +- README.md | 28 +++++++++++----------------- man/rtide-package.Rd | 5 ++--- man/tide_datetimes.Rd | 2 +- tests/testthat/test-tide-height.R | 14 +++++++------- 8 files changed, 40 insertions(+), 42 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-10-14 0.2.4
2023-03-17 0.2.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-04-18 0.4.3
2023-08-08 0.4.2
2022-02-24 0.4.1
2020-09-10 0.3.0
2020-03-02 0.2.7
2020-02-15 0.2.6
2019-10-08 0.2.4
2019-07-25 0.2.3
2019-07-23 0.2.2
Title: S-Core Graph Decomposition
Description: S-Core Graph Decomposition algorithm for graphs. This is a method
for decomposition of a weighted graph, as proposed by Eidsaa and
Almaas (2013) <doi:10.1103/PhysRevE.88.062819>. The high speed and the low
memory usage make it suitable for large graphs.
Author: Christos Adam [aut, cre]
Maintainer: Christos Adam <econp266@econ.soc.uoc.gr>
Diff between scoredec versions 0.1.1 dated 2024-10-20 and 0.1.2 dated 2024-11-20
DESCRIPTION | 14 +++++++------- MD5 | 10 +++++----- NEWS.md | 6 ++++++ README.md | 7 ++++--- build/partial.rdb |binary build/vignette.rds |binary 6 files changed, 22 insertions(+), 15 deletions(-)
Title: 'Shiny' Application for Olympic Data
Description: 'Shiny' Application to visualize Olympic Data. From 1896 to
2016. Even Winter Olympics events are included. Data is from Kaggle at
<https://www.kaggle.com/heesoo37/120-years-of-olympic-history-athletes-and-results>.
Author: Amalan Mahendran [cre, aut]
Maintainer: Amalan Mahendran <amalan0595@gmail.com>
Diff between OlympicRshiny versions 1.0.1 dated 2024-02-06 and 1.0.2 dated 2024-11-20
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/app_server.R | 13 ++++++++----- 3 files changed, 14 insertions(+), 11 deletions(-)
Title: Modeling Over Dispersed Binomial Outcome Data Using BMD and ABD
Description: Contains Probability Mass Functions, Cumulative Mass
Functions, Negative Log Likelihood value, parameter estimation and
modeling data using Binomial Mixture Distributions (BMD) (Manoj et al
(2013) <doi:10.5539/ijsp.v2n2p24>) and Alternate Binomial
Distributions (ABD) (Paul (1985) <doi:10.1080/03610928508828990>),
also Journal article to use the package(<doi:10.21105/joss.01505>).
Author: Amalan Mahendran [aut, cre] ,
Pushpakanthie Wijekoon [aut, ctb]
Maintainer: Amalan Mahendran <amalan0595@gmail.com>
Diff between fitODBOD versions 1.5.3 dated 2024-10-10 and 1.5.4 dated 2024-11-20
DESCRIPTION | 6 MD5 | 251 ++++++++++++++++---------------- R/AddBin.R | 164 ++++++++------------ R/BMD_ABD.R | 3 R/Beta.R | 69 ++------ R/BetaCorrBin.R | 102 +++++-------- R/COMPBin.R | 34 +--- R/CorrBin.R | 48 +----- R/Data.R | 150 +++++++++---------- R/GHGbeta.R | 70 ++------ R/Gamma.R | 128 ++++------------ R/Gbeta1.R | 101 +++--------- R/Kumaraswamy.R | 83 ++-------- R/LMultiBin.R | 41 +---- R/MultiBin.R | 32 ---- R/Overdispersion.R | 6 R/SimulateBOD.R | 19 ++ R/Triangle.R | 112 ++++++-------- R/Uniform.R | 56 +------ R/ml.R | 1 build/partial.rdb |binary man/figures/Table-1.png |binary man/fitBin.Rd | 4 tests/testthat/test-AIC.R | 32 +--- tests/testthat/test-Alcohol_data.R | 25 ++- tests/testthat/test-BODextract.R | 23 +- tests/testthat/test-Chromosome_data.R | 20 +- tests/testthat/test-Course_data.R | 20 +- tests/testthat/test-Epidemic_Cold.R | 38 +--- tests/testthat/test-EstMGFBetaBin.R | 45 +---- tests/testthat/test-EstMLEAddBin.R | 38 ---- tests/testthat/test-EstMLEBetaBin.R | 30 +-- tests/testthat/test-EstMLEBetaCorrBin.R | 29 +-- tests/testthat/test-EstMLECOMPBin.R | 29 +-- tests/testthat/test-EstMLECorrBin.R | 26 +-- tests/testthat/test-EstMLEGHGBB.R | 31 +-- tests/testthat/test-EstMLEGammaBin.R | 29 +-- tests/testthat/test-EstMLEGrasiaIIBin.R | 29 +-- tests/testthat/test-EstMLELMBin.R | 29 +-- tests/testthat/test-EstMLEMcGBB.R | 29 +-- tests/testthat/test-EstMLEMultiBin.R | 29 +-- tests/testthat/test-EstMLETriBin.R | 46 ++--- tests/testthat/test-Exam_data.R | 20 +- tests/testthat/test-GenerateBOD.R |only tests/testthat/test-Male_Children.R | 12 + tests/testthat/test-NegLLAddBin.R | 71 +-------- tests/testthat/test-NegLLBetaBin.R | 55 ++----- tests/testthat/test-NegLLBetaCorrBin.R | 63 ++------ tests/testthat/test-NegLLCOMPBin.R | 54 ++---- tests/testthat/test-NegLLCorrBin.R | 74 ++------- tests/testthat/test-NegLLGHGBB.R | 61 ++----- tests/testthat/test-NegLLGammaBin.R | 55 ++----- tests/testthat/test-NegLLGrassiaIIBin.R | 53 +----- tests/testthat/test-NegLLKumBin.R | 64 ++------ tests/testthat/test-NegLLLMBin.R | 59 ++----- tests/testthat/test-NegLLMcGBB.R | 59 ++----- tests/testthat/test-NegLLMultiBin.R | 59 ++----- tests/testthat/test-NegLLTriBin.R | 55 ++----- tests/testthat/test-Overdispersion.R | 93 ----------- tests/testthat/test-Plant_DiseaseData.R | 20 +- tests/testthat/test-Terror_data_ARG.R | 20 +- tests/testthat/test-Terror_data_USA.R | 20 +- tests/testthat/test-dAddBin.R | 71 ++------- tests/testthat/test-dBETA.R | 45 +---- tests/testthat/test-dBetaBin.R | 51 ++---- tests/testthat/test-dBetaCorrBin.R | 54 ++---- tests/testthat/test-dCOMPBin.R | 53 ++---- tests/testthat/test-dCorrBin.R | 66 ++------ tests/testthat/test-dGAMMA.R | 48 ++---- tests/testthat/test-dGBeta1.R | 52 ++---- tests/testthat/test-dGHGBB.R | 58 ++----- tests/testthat/test-dGHGBeta.R | 56 ++----- tests/testthat/test-dGammaBin.R | 55 ++----- tests/testthat/test-dGrassiaIIBin.R | 55 ++----- tests/testthat/test-dKUM.R | 48 ++---- tests/testthat/test-dKumBin.R | 61 ++----- tests/testthat/test-dLMBin.R | 35 ++-- tests/testthat/test-dMcGBB.R | 58 ++----- tests/testthat/test-dMultiBin.R | 61 ++----- tests/testthat/test-dTRI.R | 46 ++--- tests/testthat/test-dTriBin.R | 54 ++---- tests/testthat/test-dUNI.R | 36 +--- tests/testthat/test-dUniBin.R | 42 ++--- tests/testthat/test-fitAddBin.R | 45 ++--- tests/testthat/test-fitBetaBin.R | 45 ++--- tests/testthat/test-fitBetaCorrBin.R | 45 ++--- tests/testthat/test-fitBin.R | 43 ++--- tests/testthat/test-fitCOMPBin.R | 45 ++--- tests/testthat/test-fitCorrBin.R | 45 ++--- tests/testthat/test-fitGHGBB.R | 43 +---- tests/testthat/test-fitGammaBin.R | 45 ++--- tests/testthat/test-fitGrassiaIIBin.R | 45 ++--- tests/testthat/test-fitKumBin.R | 45 ++--- tests/testthat/test-fitLMBin.R | 45 ++--- tests/testthat/test-fitMcGBB.R | 45 ++--- tests/testthat/test-fitMultiBin.R | 45 ++--- tests/testthat/test-fitTriBin.R | 45 ++--- tests/testthat/test-fitted.R | 24 --- tests/testthat/test-mazBETA.R | 39 +--- tests/testthat/test-mazGAMMA.R | 39 +--- tests/testthat/test-mazGBeta1.R | 42 +---- tests/testthat/test-mazGHGBeta.R | 51 ++---- tests/testthat/test-mazKUM.R | 39 +--- tests/testthat/test-mazTRI.R | 39 +--- tests/testthat/test-mazUNI.R | 27 +-- tests/testthat/test-pAddBin.R | 34 ++-- tests/testthat/test-pBETA.R | 49 ++---- tests/testthat/test-pBetaBin.R | 30 ++- tests/testthat/test-pBetaCorrBin.R | 35 +++- tests/testthat/test-pCOMPBin.R | 35 +++- tests/testthat/test-pCorrBin.R | 38 +++- tests/testthat/test-pGAMMA.R | 50 ++---- tests/testthat/test-pGBeta1.R | 52 ++---- tests/testthat/test-pGHGBB.R | 34 ++-- tests/testthat/test-pGHGBeta.R | 58 ++----- tests/testthat/test-pGammaBin.R | 35 +++- tests/testthat/test-pGrassiaIIBin.R | 34 ++-- tests/testthat/test-pKUM.R | 48 ++---- tests/testthat/test-pKumBin.R | 38 +++- tests/testthat/test-pLMBin.R | 34 ++-- tests/testthat/test-pMcGBB.R | 34 ++-- tests/testthat/test-pMultiBin.R | 38 +++- tests/testthat/test-pTRI.R | 48 ++---- tests/testthat/test-pTriBin.R | 34 ++-- tests/testthat/test-pUNI.R | 36 +--- tests/testthat/test-pUniBin.R | 30 ++- tests/testthat/test-residuals.R | 2 127 files changed, 2285 insertions(+), 3596 deletions(-)
Title: Corbae-Ouliaris Frequency Domain Filtering
Description: Corbae-Ouliaris frequency domain filtering. According to
Corbae and Ouliaris (2006) <doi:10.1017/CBO9781139164863.008>,
this is a solution for extracting cycles from time series, like
business cycles etc. when filtering. This method is valid for both
stationary and non-stationary time series.
Author: Christos Adam [aut, cre]
Maintainer: Christos Adam <econp266@econ.soc.uoc.gr>
Diff between corbouli versions 0.1.2 dated 2024-10-04 and 0.1.3 dated 2024-11-20
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- NEWS.md | 6 ++++++ README.md | 8 ++++---- build/partial.rdb |binary build/vignette.rds |binary inst/doc/Introduction.Rmd | 4 ++-- inst/doc/Introduction.html | 5 ++--- man/corbae_ouliaris.Rd | 2 +- man/figures/figure2.png |binary vignettes/Introduction.Rmd | 4 ++-- vignettes/figure2.png |binary 12 files changed, 32 insertions(+), 27 deletions(-)
Title: Sound Waves Onto Morphometric Data
Description: Implement a promising, and yet little explored protocol for bioacoustical analysis, the eigensound method by MacLeod, Krieger and Jones (2013) <doi:10.4404/hystrix-24.1-6299>. Eigensound is a multidisciplinary method focused on the direct comparison between stereotyped sounds from different species. 'SoundShape', in turn, provide the tools required for anyone to go from sound waves to Principal Components Analysis, using tools extracted from traditional bioacoustics (i.e. 'tuneR' and 'seewave' packages), geometric morphometrics (i.e. 'geomorph' package) and multivariate analysis (e.g. 'stats' package). For more information, please see Rocha and Romano (2021) and check 'SoundShape' repository on GitHub for news and updates <https://github.com/p-rocha/SoundShape>.
Author: Pedro Rocha [aut, cre]
Maintainer: Pedro Rocha <p.rocha1990@gmail.com>
Diff between SoundShape versions 1.3.1 dated 2024-10-02 and 1.3.2 dated 2024-11-20
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- R/eigensound.R | 4 ++-- R/hypo.surf.R | 10 +++++----- R/threeDspectro.R | 18 +++++++++--------- build/vignette.rds |binary inst/doc/Getting-started.html | 4 ++-- man/eigensound.Rd | 4 ++-- man/hypo.surf.Rd | 10 +++++----- man/threeDspectro.Rd | 18 +++++++++--------- 10 files changed, 47 insertions(+), 47 deletions(-)