Title: REDCap Metadata Casting and Castellated Data Handling
Description: Casting metadata for REDCap database creation and handling of
castellated data using repeated instruments and longitudinal projects in
'REDCap'. Keeps a focused data export approach, by allowing to only export
required data from the database. Also for casting new REDCap databases based
on datasets from other sources.
Originally forked from the R part of 'REDCapRITS' by Paul Egeler.
See <https://github.com/pegeler/REDCapRITS>.
'REDCap' (Research Electronic Data Capture) is a secure, web-based software
platform designed to support data capture for research studies, providing
1) an intuitive interface for validated data capture; 2) audit trails for
tracking data manipulation and export procedures; 3) automated export
procedures for seamless data downloads to common statistical packages; and
4) procedures for data integration and interoperability with external
sources (Harris et al (2009) <doi:10.1016/j.jbi.2008.08.010>;
Harris et al (2019) <doi:10.1016/j.jbi.2019.103208> [...truncated...]
Author: Andreas Gammelgaard Damsbo [aut, cre]
,
Paul Egeler [aut]
Maintainer: Andreas Gammelgaard Damsbo <agdamsbo@clin.au.dk>
Diff between REDCapCAST versions 24.10.3 dated 2024-10-03 and 24.11.2 dated 2024-11-22
REDCapCAST-24.10.3/REDCapCAST/R/create_instrument_meta.R |only REDCapCAST-24.10.3/REDCapCAST/inst/doc/Introduction.R |only REDCapCAST-24.10.3/REDCapCAST/inst/doc/Introduction.Rmd |only REDCapCAST-24.10.3/REDCapCAST/inst/doc/Introduction.html |only REDCapCAST-24.10.3/REDCapCAST/man/server_factory.Rd |only REDCapCAST-24.10.3/REDCapCAST/man/ui_factory.Rd |only REDCapCAST-24.10.3/REDCapCAST/vignettes/Introduction.Rmd |only REDCapCAST-24.11.2/REDCapCAST/DESCRIPTION | 32 REDCapCAST-24.11.2/REDCapCAST/MD5 | 79 REDCapCAST-24.11.2/REDCapCAST/NAMESPACE | 27 REDCapCAST-24.11.2/REDCapCAST/NEWS.md | 34 REDCapCAST-24.11.2/REDCapCAST/R/as_factor.R |only REDCapCAST-24.11.2/REDCapCAST/R/ds2dd_detailed.R | 439 +++-- REDCapCAST-24.11.2/REDCapCAST/R/export_redcap_instrument.R |only REDCapCAST-24.11.2/REDCapCAST/R/redcapcast_data.R | 3 REDCapCAST-24.11.2/REDCapCAST/R/shiny_cast.R | 268 ++- REDCapCAST-24.11.2/REDCapCAST/README.md | 51 REDCapCAST-24.11.2/REDCapCAST/build/vignette.rds |binary REDCapCAST-24.11.2/REDCapCAST/data/redcapcast_data.csv |only REDCapCAST-24.11.2/REDCapCAST/data/redcapcast_data.rda |binary REDCapCAST-24.11.2/REDCapCAST/data/redcapcast_meta.rda |binary REDCapCAST-24.11.2/REDCapCAST/inst/WORDLIST | 26 REDCapCAST-24.11.2/REDCapCAST/inst/doc/Database-creation.R | 54 REDCapCAST-24.11.2/REDCapCAST/inst/doc/Database-creation.Rmd | 2 REDCapCAST-24.11.2/REDCapCAST/inst/doc/Database-creation.html | 859 ---------- REDCapCAST-24.11.2/REDCapCAST/inst/doc/REDCapCAST.R |only REDCapCAST-24.11.2/REDCapCAST/inst/doc/REDCapCAST.Rmd |only REDCapCAST-24.11.2/REDCapCAST/inst/doc/REDCapCAST.html |only REDCapCAST-24.11.2/REDCapCAST/inst/shiny-examples |only REDCapCAST-24.11.2/REDCapCAST/man/REDCapCAST-package.Rd | 4 REDCapCAST-24.11.2/REDCapCAST/man/all_na.Rd |only REDCapCAST-24.11.2/REDCapCAST/man/as_factor.Rd |only REDCapCAST-24.11.2/REDCapCAST/man/cast_data_overview.Rd |only REDCapCAST-24.11.2/REDCapCAST/man/cast_meta_overview.Rd |only REDCapCAST-24.11.2/REDCapCAST/man/compact_vec.Rd |only REDCapCAST-24.11.2/REDCapCAST/man/create_instrument_meta.Rd | 25 REDCapCAST-24.11.2/REDCapCAST/man/ds2dd_detailed.Rd | 35 REDCapCAST-24.11.2/REDCapCAST/man/export_redcap_instrument.Rd |only REDCapCAST-24.11.2/REDCapCAST/man/fct2num.Rd |only REDCapCAST-24.11.2/REDCapCAST/man/file_extension.Rd | 6 REDCapCAST-24.11.2/REDCapCAST/man/get_attr.Rd |only REDCapCAST-24.11.2/REDCapCAST/man/guess_time_only.Rd |only REDCapCAST-24.11.2/REDCapCAST/man/haven_all_levels.Rd |only REDCapCAST-24.11.2/REDCapCAST/man/named_levels.Rd |only REDCapCAST-24.11.2/REDCapCAST/man/nav_bar_page.Rd |only REDCapCAST-24.11.2/REDCapCAST/man/numchar2fct.Rd |only REDCapCAST-24.11.2/REDCapCAST/man/parse_data.Rd |only REDCapCAST-24.11.2/REDCapCAST/man/possibly_roman.Rd |only REDCapCAST-24.11.2/REDCapCAST/man/redcapcast_data.Rd | 3 REDCapCAST-24.11.2/REDCapCAST/man/set_attr.Rd |only REDCapCAST-24.11.2/REDCapCAST/man/shiny_cast.Rd | 7 REDCapCAST-24.11.2/REDCapCAST/man/var2fct.Rd |only REDCapCAST-24.11.2/REDCapCAST/man/vec2choice.Rd |only REDCapCAST-24.11.2/REDCapCAST/tests/testthat/test-ds2dd.R |only REDCapCAST-24.11.2/REDCapCAST/vignettes/Database-creation.Rmd | 2 REDCapCAST-24.11.2/REDCapCAST/vignettes/REDCapCAST.Rmd |only 56 files changed, 864 insertions(+), 1092 deletions(-)
Title: Neutrosophic Statistics
Description: Analyzes data involving imprecise and vague information. Provides summary statistics and describes the characteristics of neutrosophic data, as defined by Florentin Smarandache (2013).<ISBN:9781599732749>.
Author: Zahid Khan [aut],
Zsolt T. Kosztyan [aut, cre]
Maintainer: Zsolt T. Kosztyan <kosztyan.zsolt@gtk.uni-pannon.hu>
Diff between neutrostat versions 0.0.1 dated 2024-10-11 and 0.0.2 dated 2024-11-22
DESCRIPTION | 7 ++++--- MD5 | 18 ++++++++++++++++-- NAMESPACE | 40 ++++++++++++++++++++++++++++++++++++++++ R/nexp.R |only R/ngam.R |only R/nlap.R |only R/nnorm.R |only R/nray.R |only R/nwbl.R |only inst |only man/nexp.Rd |only man/ngam.Rd |only man/nlap.Rd |only man/nnorm.Rd |only man/nray.Rd |only man/nwbl.Rd |only 16 files changed, 60 insertions(+), 5 deletions(-)
Title: Diagnostics for OMOP Common Data Model Drug Records
Description: Ingredient specific diagnostics for drug exposure records in the Observational Medical Outcomes Partnership (OMOP) common data model.
Author: Ger Inberg [aut, cre] ,
Edward Burn [aut] ,
Theresa Burkard [aut] ,
Yuchen Guo [ctb] ,
Marti Catala [ctb] ,
Mike Du [ctb] ,
Xintong Li [ctb] ,
Ross Williams [ctb] ,
Erasmus MC [cph]
Maintainer: Ger Inberg <g.inberg@erasmusmc.nl>
Diff between DrugExposureDiagnostics versions 1.0.9 dated 2024-09-25 and 1.0.10 dated 2024-11-22
DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/DESCRIPTION | 9 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/MD5 | 205 ++-- DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/NAMESPACE | 1 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/NEWS.md | 5 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/R/checkDaysSupply.R | 117 +- DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/R/checkDrugDose.R | 104 +- DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/R/checkDrugExposureDuration.R | 33 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/R/checkDrugQuantity.R | 28 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/R/checkDrugRoutes.R | 47 - DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/R/checkDrugSig.R | 40 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/R/checkDrugSourceConcepts.R | 42 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/R/checkDrugType.R | 48 - DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/R/checkDrugsMissing.R | 72 + DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/R/checkVerbatimEndDate.R | 38 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/R/executeChecks.R | 181 ++-- DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/R/getDrugRecords.R | 18 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/R/getDrugStrength.R | 21 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/R/ingredientDescendantsInDb.R | 103 +- DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/R/mockDrugExposure.R | 423 +++++----- DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/R/obscureCounts.R | 13 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/R/runBenchmark.R |only DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/R/shiny.R | 1 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/R/summariseChecks.R | 128 +-- DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/R/utils.R | 59 - DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/README.md | 166 ++- DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/build/vignette.rds |binary DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/doc/DaysSupply.R | 10 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/doc/DaysSupply.Rmd | 8 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/doc/DaysSupply.html | 126 ++ DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/doc/DiagnosticsSummary.R | 10 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/doc/DiagnosticsSummary.Rmd | 8 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/doc/DiagnosticsSummary.html | 122 +- DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/doc/DrugDose.R | 10 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/doc/DrugDose.Rmd | 8 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/doc/DrugDose.html | 122 +- DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/doc/DrugDuration.R | 10 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/doc/DrugDuration.Rmd | 8 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/doc/DrugDuration.html | 126 ++ DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/doc/DrugSig.R | 10 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/doc/DrugSig.Rmd | 8 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/doc/DrugSig.html | 126 ++ DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/doc/DrugSourceConcepts.R | 10 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/doc/DrugSourceConcepts.Rmd | 8 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/doc/DrugSourceConcepts.html | 122 +- DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/doc/DrugTypes.R | 10 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/doc/DrugTypes.Rmd | 8 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/doc/DrugTypes.html | 126 ++ DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/doc/IntroductionToDrugExposureDiagnostics.R | 48 - DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/doc/IntroductionToDrugExposureDiagnostics.Rmd | 42 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/doc/IntroductionToDrugExposureDiagnostics.html | 180 ++-- DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/doc/Missingness.R | 10 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/doc/Missingness.Rmd | 8 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/doc/Missingness.html | 126 ++ DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/doc/Quantity.R | 10 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/doc/Quantity.Rmd | 8 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/doc/Quantity.html | 126 ++ DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/doc/Routes.R | 10 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/doc/Routes.Rmd | 8 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/doc/Routes.html | 126 ++ DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/doc/VerbatimEndDate.R | 10 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/doc/VerbatimEndDate.Rmd | 8 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/doc/VerbatimEndDate.html | 126 ++ DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/shiny/ResultsExplorer/data/eunomia.zip |only DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/shiny/ResultsExplorer/dataPlotPanel.R | 235 +++-- DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/shiny/ResultsExplorer/global.R | 17 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/shiny/ResultsExplorer/metaDataPanel.R |only DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/shiny/ResultsExplorer/mock.zip |only DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/shiny/ResultsExplorer/plots.R | 93 +- DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/shiny/ResultsExplorer/server.R | 165 ++- DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/shiny/ResultsExplorer/tests/testthat/test-shinytest2.R | 8 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/shiny/ResultsExplorer/ui.R | 21 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/inst/shiny/ResultsExplorer/utils.R | 57 - DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/man/executeChecks.Rd | 3 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/man/executeChecksSingleIngredient.Rd | 2 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/man/runBenchmarkExecuteSingleIngredient.Rd |only DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/man/writeResultToDisk.Rd | 3 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/tests/testthat/test-CheckDrugSig.R |only DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/tests/testthat/test-CheckVerbatimEndDate.R |only DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/tests/testthat/test-GetDrugRecords.R |only DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/tests/testthat/test-MockDrugExposure.R |only DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/tests/testthat/test-ObscureCounts.R | 42 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/tests/testthat/test-SummariseChecks.R |only DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/tests/testthat/test-SyntheaSqlServer.R | 17 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/tests/testthat/test-checkDaysSupply.R | 58 - DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/tests/testthat/test-checkDrugDose.R | 84 + DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/tests/testthat/test-checkDrugExposureDuration.R | 49 - DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/tests/testthat/test-checkDrugMissings.R | 56 - DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/tests/testthat/test-checkDrugQuantity.R | 27 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/tests/testthat/test-checkDrugRoutes.R | 48 - DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/tests/testthat/test-checkDrugSourceConcepts.R | 48 - DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/tests/testthat/test-checkDrugTypes.R | 52 - DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/tests/testthat/test-executeChecks.R | 266 ++++-- DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/tests/testthat/test-runBenchmark.R |only DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/tests/testthat/test-utils.R | 42 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/vignettes/DaysSupply.Rmd | 8 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/vignettes/DiagnosticsSummary.Rmd | 8 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/vignettes/DrugDose.Rmd | 8 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/vignettes/DrugDuration.Rmd | 8 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/vignettes/DrugSig.Rmd | 8 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/vignettes/DrugSourceConcepts.Rmd | 8 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/vignettes/DrugTypes.Rmd | 8 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/vignettes/IntroductionToDrugExposureDiagnostics.Rmd | 42 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/vignettes/Missingness.Rmd | 8 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/vignettes/Quantity.Rmd | 8 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/vignettes/Routes.Rmd | 8 DrugExposureDiagnostics-1.0.10/DrugExposureDiagnostics/vignettes/VerbatimEndDate.Rmd | 8 DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/inst/shiny/ResultsExplorer/data/mock.zip |only DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/tests/testthat/test-checkDrugSig.R |only DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/tests/testthat/test-checkVerbatimEndDate.R |only DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/tests/testthat/test-getDrugRecords.R |only DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/tests/testthat/test-mockDrugExposure.R |only DrugExposureDiagnostics-1.0.9/DrugExposureDiagnostics/tests/testthat/test-summariseChecks.R |only 112 files changed, 3242 insertions(+), 2025 deletions(-)
More information about DrugExposureDiagnostics at CRAN
Permanent link
Title: Document a Universe of Packages
Description: Creates a data frame containing the metadata associated with
the documentation of a collection of R packages. It allows for linking
topic names to their corresponding documentation online. If you
maintain a universe meta-package, it helps create a comprehensive
reference for its website.
Author: Mauro Lepore [aut, cre, cph]
Maintainer: Mauro Lepore <maurolepore@gmail.com>
Diff between dverse versions 0.0.1 dated 2024-11-05 and 0.1.0 dated 2024-11-22
DESCRIPTION | 8 +- MD5 | 20 ++--- NEWS.md | 26 ++++++- R/document_universe.R | 103 ++++++++++------------------ R/s3_strip_class.R | 3 R/search_documentation.R | 13 +-- README.md | 104 +++++++++++++++++++++-------- inst/WORDLIST | 11 +-- man/document_universe.Rd | 6 + tests/testthat/test-document_universe.R | 38 ++++++++-- tests/testthat/test-search_documentation.R | 12 --- 11 files changed, 201 insertions(+), 143 deletions(-)
Title: Bootstrapping in Different One-Way and Two-Way ANOVA
Description: To address the violation of the assumption of normally distributed variables, researchers frequently employ bootstrapping. Building upon established packages for R (Sigmann et al. (2024) <doi:10.32614/CRAN.package.afex>, Lenth (2024) <doi:10.32614/CRAN.package.emmeans>), we provide bootstrapping functions to approximate a normal distribution of the parameter estimates for between-subject, within-subject, and mixed one-way and two-way ANOVA.
Author: Lisa-Marie Segbert [aut],
Christian Bloetner [aut, cre]
Maintainer: Christian Bloetner <c.bloetner@gmail.com>
Diff between AOboot versions 0.1.0 dated 2024-09-03 and 0.1.1 dated 2024-11-22
DESCRIPTION | 8 MD5 | 8 R/AObootMixed.R | 1338 ++++++++++++++++++++++++++-------------------------- man/AObootMixed.Rd | 4 man/AObootWithin.Rd | 4 5 files changed, 685 insertions(+), 677 deletions(-)
Title: Matching Adjusted Indirect Comparison
Description: Facilitates performing matching adjusted indirect comparison
(MAIC) analysis where the endpoint of interest is either time-to-event
(e.g. overall survival) or binary (e.g. objective tumor response). The method
is described by Signorovitch et al (2012) <doi:10.1016/j.jval.2012.05.004>.
Author: Gregory Chen [aut],
Michael Seo [aut],
Isaac Gravestock [aut, cre],
Miranta Antoniou [ctb],
Chrysostomos Kalyvas [ctb],
MSD, Inc. [cph, fnd],
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Isaac Gravestock <isaac.gravestock@roche.com>
Diff between maicplus versions 0.1.0 dated 2024-11-10 and 0.1.1 dated 2024-11-22
maicplus-0.1.0/maicplus/tests/testthat/Rplots.pdf |only maicplus-0.1.1/maicplus/DESCRIPTION | 10 +- maicplus-0.1.1/maicplus/MD5 | 37 ++++------ maicplus-0.1.1/maicplus/NEWS.md | 4 + maicplus-0.1.1/maicplus/R/maic_anchored.R | 24 +++--- maicplus-0.1.1/maicplus/R/maic_unanchored.R | 4 - maicplus-0.1.1/maicplus/inst/doc/anchored_binary.R | 2 maicplus-0.1.1/maicplus/inst/doc/anchored_binary.Rmd | 2 maicplus-0.1.1/maicplus/inst/doc/anchored_binary.html | 12 +-- maicplus-0.1.1/maicplus/inst/doc/anchored_survival.html | 4 - maicplus-0.1.1/maicplus/inst/doc/calculating_weights.html | 6 - maicplus-0.1.1/maicplus/inst/doc/introduction.html | 4 - maicplus-0.1.1/maicplus/inst/doc/kaplan_meier_plots.html | 16 ++-- maicplus-0.1.1/maicplus/inst/doc/unanchored_binary.R | 10 +- maicplus-0.1.1/maicplus/inst/doc/unanchored_binary.Rmd | 10 +- maicplus-0.1.1/maicplus/inst/doc/unanchored_binary.html | 4 - maicplus-0.1.1/maicplus/inst/doc/unanchored_survival.html | 4 - maicplus-0.1.1/maicplus/tests/testthat/_snaps/maic_anchored.md | 16 ++-- maicplus-0.1.1/maicplus/vignettes/anchored_binary.Rmd | 2 maicplus-0.1.1/maicplus/vignettes/unanchored_binary.Rmd | 10 +- 20 files changed, 95 insertions(+), 86 deletions(-)
Title: Access Finnish Geospatial Data
Description: Designed to simplify geospatial data access from the Statistics Finland Web Feature Service API <https://geo.stat.fi/geoserver/index.html>, the geofi package offers researchers and analysts a set of tools to obtain and harmonize administrative spatial data for a wide range of applications, from urban planning to environmental research. The package contains annually updated time series of municipality key datasets that can be used for data aggregation and language translations.
Author: Markus Kainu [aut, cre] ,
Joona Lehtomaki [aut] ,
Juuso Parkkinen [ctb] ,
Jani Miettinen [ctb],
Pyry Kantanen [ctb],
Sampo Vesanen [ctb],
Leo Lahti [aut]
Maintainer: Markus Kainu <markus.kainu@kapsi.fi>
Diff between geofi versions 1.0.16 dated 2024-08-19 and 1.0.17 dated 2024-11-22
DESCRIPTION | 8 ++-- MD5 | 52 ++++++++++++++--------------- NEWS.md | 5 ++ R/data.R | 4 ++ build/vignette.rds |binary data/municipality_key.rda |binary data/municipality_key_2013.rda |binary data/municipality_key_2014.rda |binary data/municipality_key_2015.rda |binary data/municipality_key_2016.rda |binary data/municipality_key_2017.rda |binary data/municipality_key_2018.rda |binary data/municipality_key_2019.rda |binary data/municipality_key_2020.rda |binary data/municipality_key_2021.rda |binary data/municipality_key_2022.rda |binary data/municipality_key_2023.rda |binary data/municipality_key_2024.rda |binary inst/doc/geofi_datasets.R | 10 ++--- inst/doc/geofi_datasets.html | 30 ++++++++-------- inst/doc/geofi_joining_attribute_data.R | 10 ++--- inst/doc/geofi_joining_attribute_data.html | 4 +- inst/doc/geofi_making_maps.R | 10 ++--- inst/doc/geofi_making_maps.html | 32 ++++++++--------- inst/doc/geofi_spatial_analysis.R | 10 ++--- inst/doc/geofi_spatial_analysis.html | 18 +++++----- man/municipality_key_2024.Rd | 4 ++ 27 files changed, 105 insertions(+), 92 deletions(-)
Title: Bayesian Meta-Analysis of Diagnostic Test Data
Description: Provides a new class of Bayesian meta-analysis models that incorporates a model for internal and external validity bias. In this way, it is possible to combine studies of diverse quality and different types. For example, we can combine the results of randomized control trials (RCTs) with the results of observational studies (OS).
Author: Pablo Emilio Verde [aut, cre]
Maintainer: Pablo Emilio Verde <pabloemilio.verde@hhu.de>
Diff between bamdit versions 3.4.2 dated 2024-09-20 and 3.4.3 dated 2024-11-22
ChangeLog | 14 ++++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/bsroc.R | 1 + R/plot.metadiag.R | 4 +++- R/plotcompare.R | 3 ++- R/plotcredibility.R | 3 ++- 7 files changed, 32 insertions(+), 13 deletions(-)
Title: Compute, Handle and Plot Incidence of Dated Events
Description: Provides functions and classes to compute, handle and visualise
incidence from dated events for a defined time interval. Dates can be
provided in various standard formats. The class 'incidence2' is used to store
computed incidence and can be easily manipulated, subsetted, and plotted.
This package is part of the RECON (<https://www.repidemicsconsortium.org/>)
toolkit for outbreak analysis (<https://www.reconverse.org>).
Author: Tim Taylor [aut, cre] ,
Thibaut Jombart [ctb]
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>
Diff between incidence2 versions 2.5.0 dated 2024-10-06 and 2.6.0 dated 2024-11-22
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 29 +++++++++++++++++++++++++++++ R/incidence.R | 24 +++++++++++++++--------- R/plot.R | 6 +++++- R/utils.R | 2 ++ build/vignette.rds |binary inst/doc/incidence2.html | 34 +++++++++++++++++----------------- 8 files changed, 79 insertions(+), 38 deletions(-)
Title: Visualization of Viral Protein Sequence Diversity Dynamics
Description: To ease the visualization of outputs from Diversity Motif Analyser ('DiMA';
<https://github.com/BVU-BILSAB/DiMA>). 'vDiveR' allows visualization of the diversity
motifs (index and its variants – major, minor and unique) for elucidation of
the underlying inherent dynamics. Please refer <https://vdiver-manual.readthedocs.io/en/latest/>
for more information.
Author: Pendy Tok [aut, cre],
Li Chuin Chong [aut],
Evgenia Chikina [aut],
Yin Cheng Chen [aut],
Mohammad Asif Khan [aut]
Maintainer: Pendy Tok <pendytok0518@gmail.com>
Diff between vDiveR versions 2.0.0 dated 2024-09-12 and 2.0.1 dated 2024-11-22
vDiveR-2.0.0/vDiveR/R/plot_conservationLevel.R |only vDiveR-2.0.0/vDiveR/R/plot_worldmap.R |only vDiveR-2.0.0/vDiveR/man/plot_conservationLevel.Rd |only vDiveR-2.0.0/vDiveR/man/plot_worldmap.Rd |only vDiveR-2.0.1/vDiveR/DESCRIPTION | 14 vDiveR-2.0.1/vDiveR/MD5 | 50 vDiveR-2.0.1/vDiveR/NAMESPACE | 11 vDiveR-2.0.1/vDiveR/NEWS.md | 5 vDiveR-2.0.1/vDiveR/R/json2csv.R | 3 vDiveR-2.0.1/vDiveR/R/metadata_extraction.R | 2 vDiveR-2.0.1/vDiveR/R/plot_conservation_level.R |only vDiveR-2.0.1/vDiveR/R/plot_correlation.R | 2 vDiveR-2.0.1/vDiveR/R/plot_dynamics_protein.R | 68 vDiveR-2.0.1/vDiveR/R/plot_dynamics_proteome.R | 116 vDiveR-2.0.1/vDiveR/R/plot_entropy.R | 31 vDiveR-2.0.1/vDiveR/R/plot_time.R | 2 vDiveR-2.0.1/vDiveR/R/plot_world_map.R |only vDiveR-2.0.1/vDiveR/R/sample_data.R | 2 vDiveR-2.0.1/vDiveR/data/metadata.rda |binary vDiveR-2.0.1/vDiveR/data/protein_2hosts.rda |binary vDiveR-2.0.1/vDiveR/inst/extdata/city_mapper.csv |87098 ++++++++++----------- vDiveR-2.0.1/vDiveR/man/metadata.Rd | 2 vDiveR-2.0.1/vDiveR/man/metadata_extraction.Rd | 2 vDiveR-2.0.1/vDiveR/man/plot_conservation_level.Rd |only vDiveR-2.0.1/vDiveR/man/plot_dynamics_protein.Rd | 2 vDiveR-2.0.1/vDiveR/man/plot_dynamics_proteome.Rd | 2 vDiveR-2.0.1/vDiveR/man/plot_entropy.Rd | 4 vDiveR-2.0.1/vDiveR/man/plot_time.Rd | 2 vDiveR-2.0.1/vDiveR/man/plot_world_map.Rd |only vDiveR-2.0.1/vDiveR/tests/testthat/test-json2csv.R | 4 30 files changed, 42621 insertions(+), 44801 deletions(-)
Title: Robust Score Testing in GLMs, by Sign-Flip Contributions
Description: Provides robust tests for testing in GLMs, by sign-flipping score contributions. The tests are robust against overdispersion, heteroscedasticity and, in some cases, ignored nuisance variables. See Hemerik, Goeman and Finos (2020) <doi:10.1111/rssb.12369>.
Author: Livio Finos [cre, aut] ,
Jelle J. Goeman [ctb],
Jesse Hemerik [ctb],
Riccardo De Santis [ctb]
Maintainer: Livio Finos <livio.finos@unipd.it>
Diff between flipscores versions 1.2.0 dated 2022-08-15 and 1.3.1 dated 2024-11-22
DESCRIPTION | 22 +++- MD5 | 31 ++++-- NAMESPACE | 37 ++++---- R/anova_flipscores.R | 7 - R/compute_flips.R |only R/compute_scores.R | 201 +++++++++++++++++++++++++++++---------------- R/flipscores-package.R |only R/flipscores.R | 107 +++++++++++++++++------ R/flipscores_package.R | 6 - R/make_flips.R |only R/utility_functions.R | 23 +++-- R/utiliy_score_functions.R | 119 +++++++++++++------------- build |only man/anova.flipscores.Rd | 84 +++++++++--------- man/compute_scores.Rd | 4 man/flipscores-method.Rd | 50 +++++------ man/flipscores-package.Rd | 20 +++- man/flipscores.Rd | 40 +++++--- man/make_flips.Rd |only 19 files changed, 459 insertions(+), 292 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-10-15 1.6.6
2022-04-10 1.6.5
2022-03-29 1.6.4
2021-10-07 1.6.3
2021-03-22 1.6.2
2020-10-01 1.6.0
2019-10-22 1.5.2
2019-08-06 1.5.1
2019-06-05 1.5.0
2018-09-19 1.4.9
2018-05-07 1.4.8
2017-07-08 1.4.6
2017-06-09 1.4.5
2017-03-12 1.4.3
2017-02-11 1.4.1
2016-12-19 1.3.9
2016-11-30 1.3.8
2016-04-20 1.0.7-1
2016-01-06 1.0.7
2015-07-21 1.0.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-08-22 2.4.6
2022-04-28 2.4.5
2021-03-20 2.4.4
2020-12-10 2.4.3
2020-10-01 2.4.2
2020-07-27 2.4.1
2020-07-09 2.4.0
2019-11-15 2.3.0
2019-01-31 2.2.0
2018-12-05 2.1.3
2018-10-17 2.1.2
2018-08-17 2.1.1
2018-03-14 2.1.0
2017-05-23 2.0.8
2017-02-11 2.0.4
2016-12-01 2.0.2
2015-09-16 1.0.1
2015-08-02 1.0.0
Title: Dynamic Extensions for Network Objects
Description: Simple interface routines to facilitate the handling of network objects with complex intertemporal data. This is a part of the "statnet" suite of packages for network analysis.
Author: Carter T. Butts [aut],
Ayn Leslie-Cook [aut],
Pavel N. Krivitsky [aut],
Skye Bender-deMoll [aut, cre],
Zack Almquist [ctb],
David R. Hunter [ctb],
Li Wang [ctb],
Kirk Li [ctb],
Steven M. Goodreau [ctb],
Jeffrey Horner [ctb],
Martina Morris [ctb]
Maintainer: Skye Bender-deMoll <skyebend@uw.edu>
Diff between networkDynamic versions 0.11.4 dated 2023-12-10 and 0.11.5 dated 2024-11-22
ChangeLog | 2 ++ DESCRIPTION | 8 ++++---- MD5 | 30 +++++++++++++++--------------- inst/doc/networkDynamic.R | 2 +- inst/doc/networkDynamic.Rnw | 2 +- inst/doc/networkDynamic.pdf |binary man/Newcomb.Rd | 4 ++-- man/add.active.Rd | 12 ++++++------ man/age.at.Rd | 2 +- man/as.networkDynamic.Rd | 4 ++-- man/is.active.Rd | 4 ++-- man/network.extensions.Rd | 2 +- man/persistent_ids.Rd | 2 +- man/print.networkDynamic.Rd | 2 +- man/tea_functions.Rd | 2 +- vignettes/networkDynamic.Rnw | 2 +- 16 files changed, 41 insertions(+), 39 deletions(-)
More information about networkDynamic at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-29 0.1.0
2020-01-15 0.0.2
2018-08-16 0.0.1