Title: Interface to 'MLflow'
Description: R interface to 'MLflow', open source platform for
the complete machine learning life cycle, see <https://mlflow.org/>.
This package supports installing 'MLflow', tracking experiments,
creating and running projects, and saving and serving models.
Author: Matei Zaharia [aut, cre],
Javier Luraschi [aut],
Kevin Kuo [aut] ,
RStudio [cph]
Maintainer: Matei Zaharia <matei@databricks.com>
Diff between mlflow versions 2.17.2 dated 2024-10-31 and 2.18.0 dated 2024-11-24
DESCRIPTION | 6 +++--- MD5 | 2 +- 2 files changed, 4 insertions(+), 4 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-11-08 1.7.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-09-16 1.1.5-1
2023-02-25 1.1.4
2021-12-14 1.1.3
2021-11-23 1.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-12-17 1.1.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-02-27 1.0.1
2021-11-30 1.0.0
Title: Identification of Cell Types, Inference of Lineage Trees, and
Prediction of Noise Dynamics from Single-Cell RNA-Seq Data
Description: Application of 'RaceID' allows inference of cell types and prediction of lineage trees by the 'StemID2' algorithm (Herman, J.S., Sagar, Grun D. (2018) <DOI:10.1038/nmeth.4662>). 'VarID2' is part of this package and allows quantification of biological gene expression noise at single-cell resolution (Rosales-Alvarez, R.E., Rettkowski, J., Herman, J.S., Dumbovic, G., Cabezas-Wallscheid, N., Grun, D. (2023) <DOI:10.1186/s13059-023-02974-1>).
Author: Dominic Gruen [aut, cre]
Maintainer: Dominic Gruen <dominic.gruen@gmail.com>
Diff between RaceID versions 0.3.8 dated 2024-11-05 and 0.3.9 dated 2024-11-24
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/VarID_functions.R | 7 +++---- inst/doc/RaceID.html | 4 ++-- 4 files changed, 12 insertions(+), 13 deletions(-)
Title: Tools for Plant Ecophysiology & Modeling
Description: Contains modeling and analytical tools for plant ecophysiology.
MODELING: Simulate C3 photosynthesis using the Farquhar, von Caemmerer,
Berry (1980) <doi:10.1007/BF00386231> model as described in Buckley and
Diaz-Espejo (2015) <doi:10.1111/pce.12459>. It uses units to ensure that
parameters are properly specified and transformed before calculations.
Temperature response functions get automatically "baked" into all
parameters based on leaf temperature following Bernacchi et al. (2002)
<doi:10.1104/pp.008250>. The package includes boundary layer, cuticular,
stomatal, and mesophyll conductances to CO2, which each can vary on the
upper and lower portions of the leaf. Use straightforward functions to
simulate photosynthesis over environmental gradients such as Photosynthetic
Photon Flux Density (PPFD) and leaf temperature, or over trait gradients
such as CO2 conductance or photochemistry.
ANALYTICAL TOOLS: Fit ACi (Farquhar et al. (1980) <doi:10.1007/BF00386231>)
and [...truncated...]
Author: Joseph Stinziano [aut] ,
Cassaundra Roback [aut],
Demi Sargent [aut],
Bridget Murphy [aut],
Patrick Hudson [aut, dtc],
Chris Muir [aut, cre]
Maintainer: Chris Muir <cdmuir@wisc.edu>
Diff between photosynthesis versions 2.1.4 dated 2023-08-15 and 2.1.5 dated 2024-11-24
DESCRIPTION | 10 - LICENSE | 2 MD5 | 82 ++++++------ NAMESPACE | 1 NEWS.md | 4 R/fit_aci_response.R | 2 R/fit_aq_response.R | 103 ++++++++++++++- R/models.R | 13 +- R/photosynthesis-package.R | 3 build/vignette.rds |binary inst/doc/co2-response.R | 3 inst/doc/co2-response.Rmd | 2 inst/doc/co2-response.html | 17 +- inst/doc/hydraulic-vulnerability.R | 2 inst/doc/hydraulic-vulnerability.html | 4 inst/doc/light-respiration.R | 194 +++++++++++++++--------------- inst/doc/light-respiration.html | 4 inst/doc/light-response.R | 105 +++++++++++++--- inst/doc/light-response.Rmd | 86 +++++++++++++ inst/doc/light-response.html | 116 +++++++++++++++++ inst/doc/mesophyll-conductance.R | 2 inst/doc/mesophyll-conductance.html | 4 inst/doc/modeling-recommendations.R | 6 inst/doc/modeling-recommendations.html | 8 - inst/doc/photosynthesis-introduction.R | 178 +++++++++++++-------------- inst/doc/photosynthesis-introduction.html | 12 - inst/doc/pressure-volume.R | 2 inst/doc/pressure-volume.html | 4 inst/doc/sensitivity-analysis.R | 132 ++++++++++---------- inst/doc/sensitivity-analysis.html | 4 inst/doc/stomatal-conductance.R | 2 inst/doc/stomatal-conductance.html | 4 inst/doc/temperature-response.R | 2 inst/doc/temperature-response.html | 12 - man/fit_aci_response.Rd | 2 man/models.Rd | 6 man/photosynthesis-package.Rd | 22 +++ man/photosynthesis.Rd | 6 man/simulate_error.Rd | 2 tests/testthat/test-fit_aq_response2.R | 25 +++ vignettes/co2-response.Rmd | 2 vignettes/light-response.Rmd | 86 +++++++++++++ 42 files changed, 889 insertions(+), 387 deletions(-)
More information about photosynthesis at CRAN
Permanent link
Title: Explicitly Qualifying Namespaces by Automatically Adding 'pkg::'
to Functions
Description: Automatically adding 'pkg::' to a function, i.e. mutate()
becomes dplyr::mutate(). It is up to the user to determine which
packages should be used explicitly, whether to include base R packages
or use the functionality on selected text, a file, or a complete
directory. User friendly logging is provided in the 'RStudio' Markers
pane. Lives in the spirit of 'lintr' and 'styler'. Can also be used
for checking which packages are actually used in a project.
Author: Matthias Nistler [aut, cre]
Maintainer: Matthias Nistler <m_nistler@web.de>
Diff between origin versions 1.1.2 dated 2024-04-21 and 1.2.0 dated 2024-11-24
DESCRIPTION | 16 +++- MD5 | 52 ++++++++------- NEWS.md | 17 +++-- R/check_pkg_usage.R | 116 +++++++++++++++++------------------ R/get_parsed_data.R | 15 ++++ R/get_pkgs_from_description.R | 2 R/originize.R | 17 +++-- R/originize_dir.R | 22 ++++++ R/originize_file.R | 55 ++++++++++++---- R/originize_pkg.R | 18 ++++- R/originize_selection.R | 24 ++++--- R/originize_wrap.R | 17 +++-- R/revert_parse_data.R | 63 ++++++++++++------- R/rmd_utils.R |only R/zzz.R | 3 README.md | 1 build/vignette.rds |binary inst/doc/origin.R | 34 +++++----- inst/doc/origin.Rmd | 2 inst/doc/origin.html | 12 ++- inst/testdata/testscript_rmd.csv |only man/get_pkgs_from_description.Rd | 2 man/originize_dir.Rd | 9 ++ man/originize_file.Rd | 13 ++- man/originize_pkg.Rd | 8 ++ tests/testthat/test-originize_dir.R | 116 ++++++++++++++++++++++------------- tests/testthat/test-originize_file.R | 64 ++++++++++++++++++- vignettes/origin.Rmd | 2 28 files changed, 466 insertions(+), 234 deletions(-)
Title: Knock Errors Off Nice Guesses
Description: Miscellaneous functions and data used in Qingyao's psychological research and teaching.
Keng currently has a built-in dataset depress, and could (1) scale a vector,
(2) test the significance and compute the cut-off values of Pearson's r without raw data,
(3) compare lm()'s fitted outputs using R-squared, f_squared, post-hoc power,
and PRE (Proportional Reduction in Error, also called partial R-squared or partial Eta-squared).
(4) Calculate PRE from partial correlation, Cohen's f, or f_squared.
(5) Compute the post-hoc power for one or a set of predictors in regression analysis without raw data,
(6) Plan the sample size for one or a set of predictors in regression analysis.
Author: Qingyao Zhang [aut, cre]
Maintainer: Qingyao Zhang <qingyaozhang@outlook.com>
Diff between Keng versions 2024.11.17 dated 2024-11-17 and 2024.11.25 dated 2024-11-24
DESCRIPTION | 16 ++- MD5 | 54 ++++++---- NAMESPACE | 2 NEWS.md | 11 +- R/Scale.R | 40 ++++---- R/calc_PRE.R |only R/compare_lm.R | 193 +++++++++++++++++++++++++++++++-------- R/power_lm.R |only R/test_r.R | 73 ++++++++++++-- README.md | 14 ++ build/vignette.rds |binary inst/doc/PRE.R | 6 - inst/doc/PRE.Rmd | 8 - inst/doc/PRE.html | 68 ++++++++----- inst/doc/PartialRegression.R | 4 inst/doc/PartialRegression.Rmd | 186 ++++++++++++++++++------------------- inst/doc/PartialRegression.html | 44 +++++--- inst/doc/PlanSampleSize.R |only inst/doc/PlanSampleSize.Rmd |only inst/doc/PlanSampleSize.html |only man/Scale.Rd | 28 ++--- man/calc_PRE.Rd |only man/compare_lm.Rd | 40 ++++++-- man/power_lm.Rd |only man/test_r.Rd | 29 ++++- tests/testthat/test-Scale.R | 10 +- tests/testthat/test-calc_PRE.R |only tests/testthat/test-compare_lm.R | 19 ++- tests/testthat/test-power_lm.R |only tests/testthat/test-test_r.R | 3 vignettes/PRE.Rmd | 8 - vignettes/PartialRegression.Rmd | 186 ++++++++++++++++++------------------- vignettes/PlanSampleSize.Rmd |only 33 files changed, 658 insertions(+), 384 deletions(-)
Title: Model Evaluation and Analysis
Description: Analyses species distribution models and evaluates their performance. It includes functions for variation partitioning, extracting variable importance, computing several metrics of model discrimination and calibration performance, optimizing prediction thresholds based on a number of criteria, performing multivariate environmental similarity surface (MESS) analysis, and displaying various analytical plots. Initially described in Barbosa et al. (2013) <doi:10.1111/ddi.12100>.
Author: A. Marcia Barbosa [aut, cre],
Jennifer A. Brown [aut],
Alberto Jimenez-Valverde [aut],
Raimundo Real [aut],
Oswald van Ginkel [ctb],
Jurica Levatic [ctb],
Victoria Formoso-Freire [ctb],
Andres Baselga [ctb],
Carola Gomez-Rodriguez [ctb],
Jose Carlos [...truncated...]
Maintainer: A. Marcia Barbosa <ana.marcia.barbosa@gmail.com>
Diff between modEvA versions 3.20 dated 2024-10-29 and 3.23 dated 2024-11-24
DESCRIPTION | 8 - MD5 | 80 ++++++++--------- NEWS | 47 ++++++++++ R/Boyce.R | 226 ++++++++++++++++++++++++------------------------- R/Dsquared.R | 229 +++++++++++++++++++++++++------------------------- R/HLfit.R | 176 +++++++++++++++++++------------------- R/MillerCalib.R | 88 +++++++++---------- R/RMSE.R | 22 ++-- R/RsqGLM.R | 8 + R/confusionLabel.R | 82 ++++++++--------- R/confusionMatrix.R | 98 ++++++++++----------- R/errorMeasures.R | 30 +++--- R/getBins.R | 188 ++++++++++++++++++++--------------------- R/getThreshold.R | 86 +++++++++--------- R/logLike.R | 53 +++++------ R/lollipop.R | 19 ++-- R/multModEv.R | 4 R/optiPair.R | 142 +++++++++++++++---------------- R/optiThresh.R | 17 +-- R/plotGLM.R | 162 +++++++++++++++++------------------ R/predDensity.R | 225 ++++++++++++++++++++++++------------------------- R/predPlot.R | 80 ++++++++--------- R/similarity.R | 31 +++--- R/threshMeasures.R | 59 +++++++----- R/varImp.R | 9 + man/Boyce.Rd | 158 +++++++++++++++++----------------- man/Dsquared.Rd | 145 +++++++++++++++---------------- man/MillerCalib.Rd | 183 ++++++++++++++++++++------------------- man/RMSE.Rd | 112 ++++++++++++------------ man/confusionLabel.Rd | 112 ++++++++++++------------ man/errorMeasures.Rd | 116 ++++++++++++------------- man/getThreshold.Rd | 189 ++++++++++++++++++++--------------------- man/logLike.Rd | 131 ++++++++++++++-------------- man/lollipop.Rd | 7 - man/modEvA-package.Rd | 4 man/optiPair.Rd | 161 +++++++++++++++++------------------ man/optiThresh.Rd | 173 ++++++++++++++++++------------------- man/plotGLM.Rd | 127 +++++++++++++-------------- man/predPlot.Rd | 161 +++++++++++++++++------------------ man/threshMeasures.Rd | 5 - man/varImp.Rd | 4 41 files changed, 2025 insertions(+), 1932 deletions(-)
Title: Visualizing Hypothesis Tests in Multivariate Linear Models
Description: Provides HE plot and other functions for visualizing hypothesis
tests in multivariate linear models. HE plots represent sums-of-squares-and-products
matrices for linear hypotheses and for error using ellipses (in two
dimensions) and ellipsoids (in three dimensions). The related 'candisc' package
provides visualizations in a reduced-rank canonical discriminant space when
there are more than a few response variables.
Author: Michael Friendly [aut, cre] ,
John Fox [aut] ,
Georges Monette [aut] ,
Phil Chalmers [ctb] ,
Duncan Murdoch [ctb]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between heplots versions 1.7.0 dated 2024-05-02 and 1.7.1 dated 2024-11-24
DESCRIPTION | 20 - MD5 | 53 +- NEWS.md | 9 R/datasets.R | 167 ++++++++ R/heplots-package.R | 2 build/partial.rdb |binary build/vignette.rds |binary data/dogfood.RData |only data/oral.RData |only inst/WORDLIST | 5 inst/doc/HE_manova.R | 4 inst/doc/HE_manova.Rmd | 8 inst/doc/HE_manova.html | 60 +-- inst/doc/HE_mmra.R | 10 inst/doc/HE_mmra.html | 43 +- inst/doc/datasets.R | 28 + inst/doc/datasets.Rmd | 68 ++- inst/doc/datasets.html | 757 +++++++++++++++++++++++----------------- inst/doc/repeated-JSS.pdf |only inst/doc/repeated-JSS.pdf.asis |only man/AddHealth.Rd | 1 man/MockJury.Rd | 4 man/Parenting.Rd | 2 man/dogfood.Rd |only man/figures/README-iris4-1.png |binary man/heplots-package.Rd | 1 man/oral.Rd |only vignettes/HE-examples.bib | 1 vignettes/HE_manova.Rmd | 8 vignettes/datasets.Rmd | 68 ++- vignettes/repeated-JSS.pdf.asis |only 31 files changed, 872 insertions(+), 447 deletions(-)
Title: Graphs and Tables for OMOP Results
Description: Provides methods to transform omop_result objects into
formatted tables and figures, facilitating the visualization of study
results working with the Observational Medical Outcomes Partnership
(OMOP) Common Data Model.
Author: Marti Catala [aut] ,
Nuria Mercade-Besora [aut, cre]
,
Yuchen Guo [ctb] ,
Elin Rowlands [ctb] ,
Edward Burn [ctb]
Maintainer: Nuria Mercade-Besora <nuria.mercadebesora@ndorms.ox.ac.uk>
Diff between visOmopResults versions 0.4.0 dated 2024-09-23 and 0.5.0 dated 2024-11-24
visOmopResults-0.4.0/visOmopResults/R/addSettings.R |only visOmopResults-0.4.0/visOmopResults/R/columns.R |only visOmopResults-0.4.0/visOmopResults/R/filter.R |only visOmopResults-0.4.0/visOmopResults/R/pivotEstimates.R |only visOmopResults-0.4.0/visOmopResults/R/split.R |only visOmopResults-0.4.0/visOmopResults/R/unite.R |only visOmopResults-0.4.0/visOmopResults/inst/doc/filterSummarisedResult.R |only visOmopResults-0.4.0/visOmopResults/inst/doc/filterSummarisedResult.Rmd |only visOmopResults-0.4.0/visOmopResults/inst/doc/filterSummarisedResult.html |only visOmopResults-0.4.0/visOmopResults/inst/doc/tidySummarisedResult.R |only visOmopResults-0.4.0/visOmopResults/inst/doc/tidySummarisedResult.Rmd |only visOmopResults-0.4.0/visOmopResults/inst/doc/tidySummarisedResult.html |only visOmopResults-0.4.0/visOmopResults/inst/doc/utilityFunctions.R |only visOmopResults-0.4.0/visOmopResults/inst/doc/utilityFunctions.Rmd |only visOmopResults-0.4.0/visOmopResults/inst/doc/utilityFunctions.html |only visOmopResults-0.4.0/visOmopResults/man/addSettings.Rd |only visOmopResults-0.4.0/visOmopResults/man/additionalColumns.Rd |only visOmopResults-0.4.0/visOmopResults/man/filterAdditional.Rd |only visOmopResults-0.4.0/visOmopResults/man/filterGroup.Rd |only visOmopResults-0.4.0/visOmopResults/man/filterSettings.Rd |only visOmopResults-0.4.0/visOmopResults/man/filterStrata.Rd |only visOmopResults-0.4.0/visOmopResults/man/fxTable.Rd |only visOmopResults-0.4.0/visOmopResults/man/groupColumns.Rd |only visOmopResults-0.4.0/visOmopResults/man/gtTable.Rd |only visOmopResults-0.4.0/visOmopResults/man/optionsVisOmopTable.Rd |only visOmopResults-0.4.0/visOmopResults/man/pivotEstimates.Rd |only visOmopResults-0.4.0/visOmopResults/man/settingsColumns.Rd |only visOmopResults-0.4.0/visOmopResults/man/splitAdditional.Rd |only visOmopResults-0.4.0/visOmopResults/man/splitAll.Rd |only visOmopResults-0.4.0/visOmopResults/man/splitGroup.Rd |only visOmopResults-0.4.0/visOmopResults/man/splitNameLevel.Rd |only visOmopResults-0.4.0/visOmopResults/man/splitStrata.Rd |only visOmopResults-0.4.0/visOmopResults/man/strataColumns.Rd |only visOmopResults-0.4.0/visOmopResults/man/tidy.summarised_result.Rd |only visOmopResults-0.4.0/visOmopResults/man/tidyColumns.Rd |only visOmopResults-0.4.0/visOmopResults/man/uniteAdditional.Rd |only visOmopResults-0.4.0/visOmopResults/man/uniteGroup.Rd |only visOmopResults-0.4.0/visOmopResults/man/uniteNameLevel.Rd |only visOmopResults-0.4.0/visOmopResults/man/uniteStrata.Rd |only visOmopResults-0.4.0/visOmopResults/tests/testthat/test-addSettings.R |only visOmopResults-0.4.0/visOmopResults/tests/testthat/test-columns.R |only visOmopResults-0.4.0/visOmopResults/tests/testthat/test-filter.R |only visOmopResults-0.4.0/visOmopResults/tests/testthat/test-pivotEstimates.R |only visOmopResults-0.4.0/visOmopResults/tests/testthat/test-split.R |only visOmopResults-0.4.0/visOmopResults/tests/testthat/test-unite.R |only visOmopResults-0.4.0/visOmopResults/vignettes/filterSummarisedResult.Rmd |only visOmopResults-0.4.0/visOmopResults/vignettes/tidySummarisedResult.Rmd |only visOmopResults-0.4.0/visOmopResults/vignettes/utilityFunctions.Rmd |only visOmopResults-0.5.0/visOmopResults/DESCRIPTION | 26 visOmopResults-0.5.0/visOmopResults/MD5 | 139 - visOmopResults-0.5.0/visOmopResults/NAMESPACE | 28 visOmopResults-0.5.0/visOmopResults/R/customiseText.R |only visOmopResults-0.5.0/visOmopResults/R/formatEstimateName.R | 22 visOmopResults-0.5.0/visOmopResults/R/formatEstimateValue.R | 10 visOmopResults-0.5.0/visOmopResults/R/formatHeader.R | 240 +- visOmopResults-0.5.0/visOmopResults/R/fxTable.R | 35 visOmopResults-0.5.0/visOmopResults/R/gtTable.R | 34 visOmopResults-0.5.0/visOmopResults/R/helperTableFunctions.R | 13 visOmopResults-0.5.0/visOmopResults/R/mockResults.R | 356 +-- visOmopResults-0.5.0/visOmopResults/R/plot.R | 256 +- visOmopResults-0.5.0/visOmopResults/R/plottingThemes.R |only visOmopResults-0.5.0/visOmopResults/R/reexports.R | 123 - visOmopResults-0.5.0/visOmopResults/R/tidy.R | 148 - visOmopResults-0.5.0/visOmopResults/R/utilities.R | 29 visOmopResults-0.5.0/visOmopResults/R/visOmopTable.R | 133 - visOmopResults-0.5.0/visOmopResults/R/visTable.R | 334 +-- visOmopResults-0.5.0/visOmopResults/README.md | 144 - visOmopResults-0.5.0/visOmopResults/build/vignette.rds |binary visOmopResults-0.5.0/visOmopResults/inst/doc/plots.R | 40 visOmopResults-0.5.0/visOmopResults/inst/doc/plots.Rmd | 590 ++--- visOmopResults-0.5.0/visOmopResults/inst/doc/plots.html | 174 - visOmopResults-0.5.0/visOmopResults/inst/doc/tables.R | 2 visOmopResults-0.5.0/visOmopResults/inst/doc/tables.Rmd | 886 ++++---- visOmopResults-0.5.0/visOmopResults/inst/doc/tables.html | 1060 +++++----- visOmopResults-0.5.0/visOmopResults/man/barPlot.Rd | 5 visOmopResults-0.5.0/visOmopResults/man/boxPlot.Rd | 13 visOmopResults-0.5.0/visOmopResults/man/customiseText.Rd |only visOmopResults-0.5.0/visOmopResults/man/emptyTable.Rd |only visOmopResults-0.5.0/visOmopResults/man/figures/README-unnamed-chunk-5-1.png |only visOmopResults-0.5.0/visOmopResults/man/figures/README-unnamed-chunk-6-1.png |only visOmopResults-0.5.0/visOmopResults/man/formatEstimateName.Rd | 5 visOmopResults-0.5.0/visOmopResults/man/reexports.Rd | 20 visOmopResults-0.5.0/visOmopResults/man/scatterPlot.Rd | 6 visOmopResults-0.5.0/visOmopResults/man/themeVisOmop.Rd |only visOmopResults-0.5.0/visOmopResults/man/visOmopResults-package.Rd | 9 visOmopResults-0.5.0/visOmopResults/man/visOmopTable.Rd | 22 visOmopResults-0.5.0/visOmopResults/tests/testthat/test-customiseText.R |only visOmopResults-0.5.0/visOmopResults/tests/testthat/test-formatEstimateName.R | 870 ++++---- visOmopResults-0.5.0/visOmopResults/tests/testthat/test-formatEstimateValue.R | 630 ++--- visOmopResults-0.5.0/visOmopResults/tests/testthat/test-fxTable.R | 7 visOmopResults-0.5.0/visOmopResults/tests/testthat/test-gtTable.R | 7 visOmopResults-0.5.0/visOmopResults/tests/testthat/test-mockResults.R | 2 visOmopResults-0.5.0/visOmopResults/tests/testthat/test-plot.R | 340 +-- visOmopResults-0.5.0/visOmopResults/tests/testthat/test-tidy.R | 6 visOmopResults-0.5.0/visOmopResults/tests/testthat/test-visOmopTable.R | 255 +- visOmopResults-0.5.0/visOmopResults/tests/testthat/test-visTable.R | 12 visOmopResults-0.5.0/visOmopResults/vignettes/figure8.png |only visOmopResults-0.5.0/visOmopResults/vignettes/plots.Rmd | 590 ++--- visOmopResults-0.5.0/visOmopResults/vignettes/tables.Rmd | 886 ++++---- 99 files changed, 4275 insertions(+), 4232 deletions(-)
More information about visOmopResults at CRAN
Permanent link
Title: Machine Learning in R - Next Generation
Description: Efficient, object-oriented programming on the
building blocks of machine learning. Provides 'R6' objects for tasks,
learners, resamplings, and measures. The package is geared towards
scalability and larger datasets by supporting parallelization and
out-of-memory data-backends like databases. While 'mlr3' focuses on
the core computational operations, add-on packages provide additional
functionality.
Author: Michel Lang [aut] ,
Bernd Bischl [aut] ,
Jakob Richter [aut] ,
Patrick Schratz [aut] ,
Giuseppe Casalicchio [ctb] ,
Stefan Coors [ctb] ,
Quay Au [ctb] ,
Martin Binder [aut],
Florian Pfisterer [aut] ,
Raphael Sonabend [aut] ,
Lennart Schneider [ctb] , [...truncated...]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3 versions 0.21.1 dated 2024-10-18 and 0.22.0 dated 2024-11-24
mlr3-0.21.1/mlr3/R/TaskRegr_boston_housing.R |only mlr3-0.21.1/mlr3/man/mlr_tasks_boston_housing.Rd |only mlr3-0.22.0/mlr3/DESCRIPTION | 15 + mlr3-0.22.0/mlr3/MD5 | 132 ++++++++--------- mlr3-0.22.0/mlr3/NEWS.md | 9 + mlr3-0.22.0/mlr3/R/BenchmarkResult.R | 14 + mlr3-0.22.0/mlr3/R/DataBackend.R | 3 mlr3-0.22.0/mlr3/R/Learner.R | 11 - mlr3-0.22.0/mlr3/R/Measure.R | 22 +- mlr3-0.22.0/mlr3/R/MeasureAIC.R | 12 - mlr3-0.22.0/mlr3/R/MeasureBIC.R | 10 - mlr3-0.22.0/mlr3/R/MeasureElapsedTime.R | 7 mlr3-0.22.0/mlr3/R/MeasureInternalValidScore.R | 2 mlr3-0.22.0/mlr3/R/PredictionDataRegr.R | 4 mlr3-0.22.0/mlr3/R/PredictionRegr.R | 2 mlr3-0.22.0/mlr3/R/Resampling.R | 5 mlr3-0.22.0/mlr3/R/Task.R | 27 +++ mlr3-0.22.0/mlr3/R/TaskRegr_california_housing.R |only mlr3-0.22.0/mlr3/R/assertions.R | 20 ++ mlr3-0.22.0/mlr3/R/benchmark_grid.R | 5 mlr3-0.22.0/mlr3/R/helper_exec.R | 7 mlr3-0.22.0/mlr3/R/helper_hashes.R | 14 + mlr3-0.22.0/mlr3/R/mlr_reflections.R | 2 mlr3-0.22.0/mlr3/R/partition.R | 2 mlr3-0.22.0/mlr3/R/resample.R | 1 mlr3-0.22.0/mlr3/build/partial.rdb |binary mlr3-0.22.0/mlr3/inst/extdata/california_housing.rds |only mlr3-0.22.0/mlr3/man/BenchmarkResult.Rd | 2 mlr3-0.22.0/mlr3/man/Learner.Rd | 11 - mlr3-0.22.0/mlr3/man/Measure.Rd | 4 mlr3-0.22.0/mlr3/man/PredictionRegr.Rd | 2 mlr3-0.22.0/mlr3/man/Resampling.Rd | 4 mlr3-0.22.0/mlr3/man/Task.Rd | 12 + mlr3-0.22.0/mlr3/man/TaskClassif.Rd | 2 mlr3-0.22.0/mlr3/man/TaskRegr.Rd | 2 mlr3-0.22.0/mlr3/man/TaskSupervised.Rd | 2 mlr3-0.22.0/mlr3/man/TaskUnsupervised.Rd | 2 mlr3-0.22.0/mlr3/man/california_housing.Rd |only mlr3-0.22.0/mlr3/man/mlr_assertions.Rd | 1 mlr3-0.22.0/mlr3/man/mlr_measures_elapsed_time.Rd | 7 mlr3-0.22.0/mlr3/man/mlr_tasks.Rd | 2 mlr3-0.22.0/mlr3/man/mlr_tasks_breast_cancer.Rd | 2 mlr3-0.22.0/mlr3/man/mlr_tasks_german_credit.Rd | 2 mlr3-0.22.0/mlr3/man/mlr_tasks_iris.Rd | 2 mlr3-0.22.0/mlr3/man/mlr_tasks_mtcars.Rd | 2 mlr3-0.22.0/mlr3/man/mlr_tasks_penguins.Rd | 2 mlr3-0.22.0/mlr3/man/mlr_tasks_pima.Rd | 2 mlr3-0.22.0/mlr3/man/mlr_tasks_sonar.Rd | 2 mlr3-0.22.0/mlr3/man/mlr_tasks_spam.Rd | 2 mlr3-0.22.0/mlr3/man/mlr_tasks_wine.Rd | 2 mlr3-0.22.0/mlr3/man/mlr_tasks_zoo.Rd | 2 mlr3-0.22.0/mlr3/man/partition.Rd | 2 mlr3-0.22.0/mlr3/tests/testthat/_snaps |only mlr3-0.22.0/mlr3/tests/testthat/teardown.R | 1 mlr3-0.22.0/mlr3/tests/testthat/test_Learner.R | 16 +- mlr3-0.22.0/mlr3/tests/testthat/test_Measure.R | 4 mlr3-0.22.0/mlr3/tests/testthat/test_MeasureRegr.R | 2 mlr3-0.22.0/mlr3/tests/testthat/test_PredictionRegr.R | 8 - mlr3-0.22.0/mlr3/tests/testthat/test_Resampling.R | 2 mlr3-0.22.0/mlr3/tests/testthat/test_Task.R | 84 +++++++++- mlr3-0.22.0/mlr3/tests/testthat/test_TaskRegr.R | 6 mlr3-0.22.0/mlr3/tests/testthat/test_benchmark.R | 15 + mlr3-0.22.0/mlr3/tests/testthat/test_convert_task.R | 46 ++--- mlr3-0.22.0/mlr3/tests/testthat/test_encapsulate.R | 18 -- mlr3-0.22.0/mlr3/tests/testthat/test_hotstart.R | 4 mlr3-0.22.0/mlr3/tests/testthat/test_mlr_reflections.R | 12 - mlr3-0.22.0/mlr3/tests/testthat/test_parallel.R | 2 mlr3-0.22.0/mlr3/tests/testthat/test_predict.R | 9 - mlr3-0.22.0/mlr3/tests/testthat/test_resample.R | 15 + mlr3-0.22.0/mlr3/tests/testthat/test_resultdata.R | 5 70 files changed, 408 insertions(+), 242 deletions(-)
Title: Environmental Seismology Toolbox
Description: Environmental seismology is a scientific field that studies the
seismic signals, emitted by Earth surface processes. This package
provides all relevant functions to read/write seismic data files, prepare,
analyse and visualise seismic data, and generate reports of the processing
history.
Author: Michael Dietze [cre, aut, trl],
Christoph Burow [ctb],
Sophie Lagarde [ctb, trl],
Clement Hibert [ctb, aut]
Maintainer: Michael Dietze <michael.dietze@uni-goettingen.de>
Diff between eseis versions 0.7.3 dated 2023-08-10 and 0.8.0 dated 2024-11-24
eseis-0.7.3/eseis/R/aux_getIRISdata.R |only eseis-0.7.3/eseis/R/aux_getIRISstation.R |only eseis-0.7.3/eseis/man/aux_getIRISdata.Rd |only eseis-0.7.3/eseis/man/aux_getIRISstation.Rd |only eseis-0.7.3/eseis/man/eseis.Rd |only eseis-0.8.0/eseis/DESCRIPTION | 26 eseis-0.8.0/eseis/MD5 | 280 +++++-- eseis-0.8.0/eseis/NAMESPACE | 25 eseis-0.8.0/eseis/NEWS | 49 + eseis-0.8.0/eseis/R/RcppExports.R | 12 eseis-0.8.0/eseis/R/aux_checkfiles.R |only eseis-0.8.0/eseis/R/aux_getxml.R |only eseis-0.8.0/eseis/R/aux_organisecubefiles.R | 873 ++++++++++------------- eseis-0.8.0/eseis/R/aux_picknetwork.R |only eseis-0.8.0/eseis/R/aux_picknetworkparallel.R |only eseis-0.8.0/eseis/R/aux_psdsummary.R | 66 + eseis-0.8.0/eseis/R/aux_splitcubechannels.R |only eseis-0.8.0/eseis/R/aux_stationinfofile.R | 61 - eseis-0.8.0/eseis/R/eseis-package.R | 95 +- eseis-0.8.0/eseis/R/fmi_spectra.R | 2 eseis-0.8.0/eseis/R/gui_models.R | 19 eseis-0.8.0/eseis/R/list_logger.R | 13 eseis-0.8.0/eseis/R/list_sensor.R | 111 ++ eseis-0.8.0/eseis/R/methods_eseis.R | 6 eseis-0.8.0/eseis/R/ncc_correlate.R |only eseis-0.8.0/eseis/R/ncc_stretch.R |only eseis-0.8.0/eseis/R/pick_stalta.R | 35 eseis-0.8.0/eseis/R/plot_correlogram.R |only eseis-0.8.0/eseis/R/plot_event.R |only eseis-0.8.0/eseis/R/plot_signal.R | 178 ++-- eseis-0.8.0/eseis/R/plot_spectrogram.R | 12 eseis-0.8.0/eseis/R/plot_spectrum.R | 14 eseis-0.8.0/eseis/R/read_data.R | 36 eseis-0.8.0/eseis/R/read_mseed.R | 364 +++++---- eseis-0.8.0/eseis/R/signal_aggregate.R | 3 eseis-0.8.0/eseis/R/signal_clip.R | 24 eseis-0.8.0/eseis/R/signal_correlation.R |only eseis-0.8.0/eseis/R/signal_deconvolve.R | 330 ++++++-- eseis-0.8.0/eseis/R/signal_differentiate.R |only eseis-0.8.0/eseis/R/signal_fill.R | 44 - eseis-0.8.0/eseis/R/signal_interpolate.R |only eseis-0.8.0/eseis/R/signal_kurtosis.R |only eseis-0.8.0/eseis/R/signal_merge.R |only eseis-0.8.0/eseis/R/signal_rotate.R | 28 eseis-0.8.0/eseis/R/signal_spectrum.R | 55 + eseis-0.8.0/eseis/R/signal_stalta.R |only eseis-0.8.0/eseis/R/signal_stats.R | 155 ++-- eseis-0.8.0/eseis/R/spatial_distance.R | 10 eseis-0.8.0/eseis/R/spatial_migrate.R | 8 eseis-0.8.0/eseis/R/spatial_parabola.R |only eseis-0.8.0/eseis/R/time_jd.R |only eseis-0.8.0/eseis/R/zzz.R | 2 eseis-0.8.0/eseis/inst/shiny/models/server.R | 16 eseis-0.8.0/eseis/inst/shiny/models/ui.R | 21 eseis-0.8.0/eseis/man/aux_checkfiles.Rd |only eseis-0.8.0/eseis/man/aux_getxml.Rd |only eseis-0.8.0/eseis/man/aux_organisecubefiles.Rd | 253 +++--- eseis-0.8.0/eseis/man/aux_picknetwork.Rd |only eseis-0.8.0/eseis/man/aux_picknetworkparallel.Rd |only eseis-0.8.0/eseis/man/aux_psdsummary.Rd | 18 eseis-0.8.0/eseis/man/aux_splitcubechannels.Rd |only eseis-0.8.0/eseis/man/aux_stationinfofile.Rd | 6 eseis-0.8.0/eseis/man/earthquake.Rd | 6 eseis-0.8.0/eseis/man/eseis-package.Rd |only eseis-0.8.0/eseis/man/gui_models.Rd | 11 eseis-0.8.0/eseis/man/ncc_correlate.Rd |only eseis-0.8.0/eseis/man/ncc_stretch.Rd |only eseis-0.8.0/eseis/man/plot_correlogram.Rd |only eseis-0.8.0/eseis/man/plot_event.Rd |only eseis-0.8.0/eseis/man/read_data.Rd | 7 eseis-0.8.0/eseis/man/read_mseed.Rd | 54 - eseis-0.8.0/eseis/man/rockfall.Rd | 6 eseis-0.8.0/eseis/man/signal_clip.Rd | 9 eseis-0.8.0/eseis/man/signal_correlation.Rd |only eseis-0.8.0/eseis/man/signal_deconvolve.Rd | 65 + eseis-0.8.0/eseis/man/signal_differentiate.Rd |only eseis-0.8.0/eseis/man/signal_fill.Rd | 23 eseis-0.8.0/eseis/man/signal_interpolate.Rd |only eseis-0.8.0/eseis/man/signal_kurtosis.Rd |only eseis-0.8.0/eseis/man/signal_merge.Rd |only eseis-0.8.0/eseis/man/signal_spectrum.Rd | 15 eseis-0.8.0/eseis/man/signal_stalta.Rd |only eseis-0.8.0/eseis/man/signal_stats.Rd | 136 +-- eseis-0.8.0/eseis/man/spatial_distance.Rd | 8 eseis-0.8.0/eseis/man/spatial_migrate.Rd | 8 eseis-0.8.0/eseis/man/spatial_parabola.Rd |only eseis-0.8.0/eseis/man/time_jd.Rd |only eseis-0.8.0/eseis/src/Makevars |only eseis-0.8.0/eseis/src/Makevars.win |only eseis-0.8.0/eseis/src/RcppExports.cpp | 13 eseis-0.8.0/eseis/src/eseis_init.c | 4 eseis-0.8.0/eseis/src/kurtosis_event.cpp | 10 eseis-0.8.0/eseis/src/libmseed |only eseis-0.8.0/eseis/src/parseMiniSEED.c |only eseis-0.8.0/eseis/src/run_cor.cpp |only 95 files changed, 2239 insertions(+), 1386 deletions(-)
Title: An API Wrapper for 'DAWA' - 'The Danish Address Web API'
Description: Functions for interacting with all sections of
the official 'Danish Address Web API' (also known as 'DAWA')
<https://api.dataforsyningen.dk>. The development of this package is
completely independent from the government agency, Klimadatastyrelsen,
who maintains the API.
Author: Aleksander Bang-Larsen [aut, cre, cph]
Maintainer: Aleksander Bang-Larsen <contact@aleksanderbl.dk>
Diff between dawaR versions 0.2.4 dated 2024-11-17 and 0.2.6 dated 2024-11-24
dawaR-0.2.4/dawaR/tests/testthat/test-sections.R |only dawaR-0.2.6/dawaR/DESCRIPTION | 11 - dawaR-0.2.6/dawaR/MD5 | 40 ++--- dawaR-0.2.6/dawaR/NAMESPACE | 4 dawaR-0.2.6/dawaR/NEWS.md | 13 + dawaR-0.2.6/dawaR/R/base_api.R | 77 ++++++++-- dawaR-0.2.6/dawaR/R/get_map_data.R | 20 ++ dawaR-0.2.6/dawaR/R/status_check.R | 37 ++++ dawaR-0.2.6/dawaR/inst/WORDLIST | 4 dawaR-0.2.6/dawaR/inst/doc/status.Rmd | 2 dawaR-0.2.6/dawaR/inst/doc/status.html | 3 dawaR-0.2.6/dawaR/man/connection_check.Rd |only dawaR-0.2.6/dawaR/man/status_check.Rd | 5 dawaR-0.2.6/dawaR/tests/testthat/test-1-dawa-sections.R |only dawaR-0.2.6/dawaR/tests/testthat/test-2-get_data-sections.R |only dawaR-0.2.6/dawaR/tests/testthat/test-3-get_map_data-sections.R |only dawaR-0.2.6/dawaR/tests/testthat/test-afstemningsomraader.R | 2 dawaR-0.2.6/dawaR/tests/testthat/test-autocomplete.R | 1 dawaR-0.2.6/dawaR/tests/testthat/test-base_api.R | 8 + dawaR-0.2.6/dawaR/tests/testthat/test-get_data.R | 1 dawaR-0.2.6/dawaR/tests/testthat/test-get_map_data-postnumre.R |only dawaR-0.2.6/dawaR/tests/testthat/test-get_map_data.R | 1 dawaR-0.2.6/dawaR/tests/testthat/test-reverse.R | 3 dawaR-0.2.6/dawaR/vignettes/status.Rmd | 2 24 files changed, 197 insertions(+), 37 deletions(-)
Title: Efficient Serialization of R Objects
Description: Streamlines and accelerates the process of saving and loading R objects, improving speed and compression compared to other methods. The package provides two compression formats: the 'qs2' format, which uses R serialization via the C API while optimizing compression and disk I/O, and the 'qdata' format, featuring custom serialization for slightly faster performance and better compression. Additionally, the 'qs2' format can be directly converted to the standard 'RDS' format, ensuring long-term compatibility with future versions of R.
Author: Travers Ching [aut, cre, cph],
Yann Collet [ctb, cph] ,
Facebook, Inc. [cph] ,
Reichardt Tino [ctb, cph] ,
Skibinski Przemyslaw [ctb, cph] ,
Mori Yuta [ctb, cph] ,
Francesc Alted [ctb, cph]
Maintainer: Travers Ching <traversc@gmail.com>
Diff between qs2 versions 0.1.1 dated 2024-09-16 and 0.1.2 dated 2024-11-24
qs2-0.1.1/qs2/R/documentation.R |only qs2-0.1.1/qs2/R/qs_rds_conversion.R |only qs2-0.1.2/qs2/ChangeLog | 10 qs2-0.1.2/qs2/DESCRIPTION | 13 qs2-0.1.2/qs2/MD5 | 92 +- qs2-0.1.2/qs2/NAMESPACE | 22 qs2-0.1.2/qs2/R/RcppExports.R | 44 + qs2-0.1.2/qs2/R/ascii_encoding.R |only qs2-0.1.2/qs2/R/qs_savem.R |only qs2-0.1.2/qs2/R/qs_to_rds.R |only qs2-0.1.2/qs2/R/qx_functions.R |only qs2-0.1.2/qs2/R/starnames.R |only qs2-0.1.2/qs2/README.md | 51 + qs2-0.1.2/qs2/data |only qs2-0.1.2/qs2/inst/doc/vignette.R | 9 qs2-0.1.2/qs2/inst/doc/vignette.html | 137 ++- qs2-0.1.2/qs2/inst/doc/vignette.rmd | 52 + qs2-0.1.2/qs2/inst/include |only qs2-0.1.2/qs2/man/base85_decode.Rd |only qs2-0.1.2/qs2/man/base85_encode.Rd |only qs2-0.1.2/qs2/man/base91_decode.Rd |only qs2-0.1.2/qs2/man/base91_encode.Rd |only qs2-0.1.2/qs2/man/blosc_shuffle_raw.Rd | 2 qs2-0.1.2/qs2/man/blosc_unshuffle_raw.Rd | 2 qs2-0.1.2/qs2/man/catquo.Rd |only qs2-0.1.2/qs2/man/decode_source.Rd |only qs2-0.1.2/qs2/man/encode_source.Rd |only qs2-0.1.2/qs2/man/qd_deserialize.Rd |only qs2-0.1.2/qs2/man/qd_read.Rd | 9 qs2-0.1.2/qs2/man/qd_save.Rd | 9 qs2-0.1.2/qs2/man/qd_serialize.Rd |only qs2-0.1.2/qs2/man/qs_deserialize.Rd |only qs2-0.1.2/qs2/man/qs_read.Rd | 9 qs2-0.1.2/qs2/man/qs_readm.Rd |only qs2-0.1.2/qs2/man/qs_save.Rd | 9 qs2-0.1.2/qs2/man/qs_savem.Rd |only qs2-0.1.2/qs2/man/qs_serialize.Rd |only qs2-0.1.2/qs2/man/qs_to_rds.Rd | 2 qs2-0.1.2/qs2/man/qx_dump.Rd | 2 qs2-0.1.2/qs2/man/rds_to_qs.Rd | 2 qs2-0.1.2/qs2/man/starnames.Rd |only qs2-0.1.2/qs2/man/xxhash_raw.Rd |only qs2-0.1.2/qs2/man/zstd_compress_bound.Rd | 2 qs2-0.1.2/qs2/man/zstd_compress_raw.Rd | 2 qs2-0.1.2/qs2/man/zstd_decompress_raw.Rd | 2 qs2-0.1.2/qs2/src/RcppExports.cpp | 137 +++ qs2-0.1.2/qs2/src/ascii_encoding |only qs2-0.1.2/qs2/src/io/cvector_module.h |only qs2-0.1.2/qs2/src/io/filestream_module.h | 10 qs2-0.1.2/qs2/src/io/multithreaded_block_module.h | 88 +- qs2-0.1.2/qs2/src/qd_deserializer.h | 3 qs2-0.1.2/qs2/src/qd_serializer.h | 1 qs2-0.1.2/qs2/src/qs_deserializer.h | 2 qs2-0.1.2/qs2/src/qs_serializer.h | 9 qs2-0.1.2/qs2/src/qs_unwind_protect.h | 8 qs2-0.1.2/qs2/src/qx_file_headers.h | 10 qs2-0.1.2/qs2/src/qx_functions.cpp | 815 +++++++++++++++++----- qs2-0.1.2/qs2/tests/correctness_testing.R | 10 qs2-0.1.2/qs2/tests/qs_savem_testing.R |only qs2-0.1.2/qs2/vignettes/vignette.rmd | 52 + 60 files changed, 1243 insertions(+), 384 deletions(-)