Title: Download Forestry Data
Description: Functions for downloading forestry and land use data for use in spatial analysis. This packages offers a user-friendly solution to quickly obtain datasets such as forest height, forest types, tree species under various climate change scenarios, or land use data among others.
Author: Adrian Cidre Gonzalez [aut, cre]
Maintainer: Adrian Cidre Gonzalez <adrian.cidre@gmail.com>
Diff between forestdata versions 0.2.0 dated 2024-11-23 and 0.2.1 dated 2024-11-25
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 7 ++++++- R/canopy-height.R | 3 +-- README.md | 2 +- 5 files changed, 16 insertions(+), 12 deletions(-)
Title: Clustering
Description: A tool that implements the clustering algorithms from 'mothur' (Schloss PD et al. (2009) <doi:10.1128/AEM.01541-09>). 'clustur' make use of the cluster() and make.shared() command from 'mothur'. Our cluster() function has five different algorithms implemented: 'OptiClust', 'furthest', 'nearest', 'average', and 'weighted'. 'OptiClust' is an optimized clustering method for Operational Taxonomic Units, and you can learn more here, (Westcott SL, Schloss PD (2017) <doi:10.1128/mspheredirect.00073-17>). The make.shared() command is always applied at the end of the clustering command. This functionality allows us to generate and create clustering and abundance data efficiently.
Author: Gregory Johnson [aut] ,
Sarah Westcott [aut],
Patrick Schloss [aut, cre, cph]
Maintainer: Patrick Schloss <pschloss@umich.edu>
Diff between clustur versions 0.1.0 dated 2024-11-14 and 0.1.1 dated 2024-11-25
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/cluster.R | 2 +- src/ClusterCommand.cpp | 1 - src/main.cpp | 10 +++++----- 5 files changed, 14 insertions(+), 15 deletions(-)
Title: Black Marble Data and Statistics
Description: Geographically referenced data and statistics of nighttime lights from NASA Black Marble <https://blackmarble.gsfc.nasa.gov/>.
Author: Robert Marty [aut, cre] ,
Gabriel Stefanini Vicente [aut]
Maintainer: Robert Marty <rmarty@worldbank.org>
Diff between blackmarbler versions 0.2.0 dated 2024-04-26 and 0.2.2 dated 2024-11-25
DESCRIPTION | 8 MD5 | 21 - NAMESPACE | 2 R/blackmarbler.R | 550 ++++++++++++++++++++++----------------- README.md | 50 ++- man/bm_extract.Rd | 4 man/bm_raster.Rd | 4 man/figures/_archive |only man/figures/nasa_laads_login.png |binary man/figures/nasa_login_1.png |only man/figures/nasa_login_2.png |only man/figures/nasa_login_3.png |only man/get_nasa_token.Rd |only tests/testthat/test-bm_raster.R | 64 ++-- 14 files changed, 416 insertions(+), 287 deletions(-)
Title: Smooth Effects on Response Penalty for CLM
Description: Implements a regularization method for cumulative link models using the
Smooth-Effect-on-Response Penalty (SERP). This method allows flexible
modeling of ordinal data by enabling a smooth transition from a general
cumulative link model to a simplified version of the same model. As the
tuning parameter increases from zero to infinity, the subject-specific
effects for each variable converge to a single global effect.
The approach addresses common issues in cumulative link models, such as
parameter unidentifiability and numerical instability, by maximizing a
penalized log-likelihood instead of the standard non-penalized version.
Fitting is performed using a modified Newton's method. Additionally, the
package includes various model performance metrics and descriptive tools.
For details on the implemented penalty method, see
Ugba (2021) <doi:10.21105/joss.03705> and
Ugba et al. (2021) <doi:10.3390/stats4030037>.
Author: Ejike R. Ugba [aut, cre, cph]
Maintainer: Ejike R. Ugba <ejike.ugba@outlook.com>
Diff between serp versions 0.2.4 dated 2022-02-16 and 0.2.5 dated 2024-11-25
DESCRIPTION | 40 ++++++------- MD5 | 12 ++-- NAMESPACE | 76 +++++++++++++------------- NEWS.md | 172 +++++++++++++++++++++++++++++++++-------------------------- R/serp.fit.R | 2 README.md | 7 +- man/wine.Rd | 132 ++++++++++++++++++++++----------------------- 7 files changed, 230 insertions(+), 211 deletions(-)
Title: Predictions, Comparisons, Slopes, Marginal Means, and Hypothesis
Tests
Description: Compute and plot predictions, slopes, marginal means, and comparisons (contrasts, risk ratios, odds, etc.) for over 100 classes of statistical and machine learning models in R. Conduct linear and non-linear hypothesis tests, or equivalence tests. Calculate uncertainty estimates using the delta method, bootstrapping, or simulation-based inference. Details can be found in Arel-Bundock, Greifer, and Heiss (2024) <doi:10.18637/jss.v111.i09>.
Author: Vincent Arel-Bundock [aut, cre, cph]
,
Noah Greifer [ctb] ,
Etienne Bacher [ctb] ,
Grant McDermott [ctb] ,
Andrew Heiss [ctb]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between marginaleffects versions 0.23.0 dated 2024-10-05 and 0.24.0 dated 2024-11-25
marginaleffects-0.23.0/marginaleffects/R/posterior_draws.R |only marginaleffects-0.23.0/marginaleffects/man/posteriordraws.Rd |only marginaleffects-0.23.0/marginaleffects/man/specify_hypothesis.Rd |only marginaleffects-0.24.0/marginaleffects/DESCRIPTION | 43 marginaleffects-0.24.0/marginaleffects/MD5 | 95 marginaleffects-0.24.0/marginaleffects/NAMESPACE | 5 marginaleffects-0.24.0/marginaleffects/NEWS.md | 25 marginaleffects-0.24.0/marginaleffects/R/broom.R | 81 marginaleffects-0.24.0/marginaleffects/R/by.R | 8 marginaleffects-0.24.0/marginaleffects/R/comparisons.R | 723 +++---- marginaleffects-0.24.0/marginaleffects/R/config.R |only marginaleffects-0.24.0/marginaleffects/R/get_coef.R | 20 marginaleffects-0.24.0/marginaleffects/R/get_contrast_data.R | 6 marginaleffects-0.24.0/marginaleffects/R/get_draws.R |only marginaleffects-0.24.0/marginaleffects/R/get_hypothesis.R | 26 marginaleffects-0.24.0/marginaleffects/R/get_vcov.R | 242 +- marginaleffects-0.24.0/marginaleffects/R/hypotheses.R | 573 ++--- marginaleffects-0.24.0/marginaleffects/R/hypothesis_helper.R | 2 marginaleffects-0.24.0/marginaleffects/R/imputation.R | 101 - marginaleffects-0.24.0/marginaleffects/R/inferences.R | 2 marginaleffects-0.24.0/marginaleffects/R/methods_glmmTMB.R | 7 marginaleffects-0.24.0/marginaleffects/R/methods_lme4.R | 7 marginaleffects-0.24.0/marginaleffects/R/methods_systemfit.R |only marginaleffects-0.24.0/marginaleffects/R/package.R | 147 - marginaleffects-0.24.0/marginaleffects/R/plot_build.R | 10 marginaleffects-0.24.0/marginaleffects/R/plot_comparisons.R | 241 +- marginaleffects-0.24.0/marginaleffects/R/plot_predictions.R | 269 +- marginaleffects-0.24.0/marginaleffects/R/plot_slopes.R | 100 - marginaleffects-0.24.0/marginaleffects/R/predictions.R | 967 +++++----- marginaleffects-0.24.0/marginaleffects/R/print.R | 547 ++--- marginaleffects-0.24.0/marginaleffects/R/sanitize_comparison.R | 28 marginaleffects-0.24.0/marginaleffects/R/sanitize_newdata.R | 3 marginaleffects-0.24.0/marginaleffects/R/sanitize_variables.R | 695 +++---- marginaleffects-0.24.0/marginaleffects/R/slopes.R | 271 +- marginaleffects-0.24.0/marginaleffects/R/utils.R | 5 marginaleffects-0.24.0/marginaleffects/R/zzz.R |only marginaleffects-0.24.0/marginaleffects/README.md | 176 - marginaleffects-0.24.0/marginaleffects/build |only marginaleffects-0.24.0/marginaleffects/inst/CITATION | 39 marginaleffects-0.24.0/marginaleffects/inst/WORDLIST | 9 marginaleffects-0.24.0/marginaleffects/man/comparisons.Rd | 88 marginaleffects-0.24.0/marginaleffects/man/get_coef.Rd | 9 marginaleffects-0.24.0/marginaleffects/man/get_draws.Rd |only marginaleffects-0.24.0/marginaleffects/man/get_vcov.Rd | 9 marginaleffects-0.24.0/marginaleffects/man/hypotheses.Rd | 18 marginaleffects-0.24.0/marginaleffects/man/inferences.Rd | 2 marginaleffects-0.24.0/marginaleffects/man/plot_comparisons.Rd | 4 marginaleffects-0.24.0/marginaleffects/man/plot_predictions.Rd | 4 marginaleffects-0.24.0/marginaleffects/man/plot_slopes.Rd | 4 marginaleffects-0.24.0/marginaleffects/man/posterior_draws.Rd | 21 marginaleffects-0.24.0/marginaleffects/man/predictions.Rd | 76 marginaleffects-0.24.0/marginaleffects/man/sanitize_model_specific.Rd | 4 marginaleffects-0.24.0/marginaleffects/man/slopes.Rd | 77 53 files changed, 2903 insertions(+), 2886 deletions(-)
More information about marginaleffects at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-10 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-02-11 0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-07-08 0.2.6
2022-11-23 0.2.5
2022-09-03 0.2.4
2022-02-03 0.2.3
2022-01-18 0.2.2
2020-08-30 0.2.1
2020-01-10 0.1.1
2019-10-25 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-01-18 1.1.1
2016-01-16 1.1.0
2015-12-01 1.0.4
2015-10-15 1.0.3
2015-10-14 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-08-09 1.6.0
2023-06-24 1.5.1
2023-06-17 1.5.0
2023-05-19 1.4.0
2022-01-13 1.3.1
2021-12-23 1.3.0
2020-08-06 1.2.0
2020-02-24 1.1.0
2020-02-11 1.0.0
Title: Statistical Analysis in Epidemiology
Description: Functions for demographic and epidemiological analysis in
the Lexis diagram, i.e. register and cohort follow-up data. In
particular representation, manipulation, rate estimation and
simulation for multistate data - the Lexis suite of functions, which
includes interfaces to 'mstate', 'etm' and 'cmprsk' packages.
Contains functions for Age-Period-Cohort and Lee-Carter modeling and
a function for interval censored data and some useful functions for
tabulation and plotting, as well as a number of epidemiological data
sets.
Author: Bendix Carstensen [aut, cre],
Martyn Plummer [aut],
Esa Laara [ctb],
Michael Hills [ctb]
Maintainer: Bendix Carstensen <b@bxc.dk>
Diff between Epi versions 2.57 dated 2024-11-16 and 2.58 dated 2024-11-25
Epi-2.57/Epi/inst/doc/flup.R |only Epi-2.57/Epi/inst/doc/flup.pdf |only Epi-2.57/Epi/inst/doc/flup.rnw |only Epi-2.57/Epi/vignettes/flup.rnw |only Epi-2.58/Epi/CHANGES | 4 ++ Epi-2.58/Epi/DESCRIPTION | 8 ++--- Epi-2.58/Epi/MD5 | 38 ++++++++++++------------ Epi-2.58/Epi/build/vignette.rds |binary Epi-2.58/Epi/inst/doc/aaflup.R |only Epi-2.58/Epi/inst/doc/aaflup.pdf |only Epi-2.58/Epi/inst/doc/aaflup.rnw |only Epi-2.58/Epi/inst/doc/addLexis.R | 57 +++++++++++++++++------------------- Epi-2.58/Epi/inst/doc/addLexis.pdf |binary Epi-2.58/Epi/inst/doc/addLexis.rnw | 1 Epi-2.58/Epi/inst/doc/crisk.pdf |binary Epi-2.58/Epi/inst/doc/index.html | 6 +-- Epi-2.58/Epi/inst/doc/simLexis.pdf |binary Epi-2.58/Epi/inst/doc/yll.pdf |binary Epi-2.58/Epi/man/ci.lin.Rd | 7 ++-- Epi-2.58/Epi/vignettes/aaflup.rnw |only Epi-2.58/Epi/vignettes/addLexis.rnw | 1 Epi-2.58/Epi/vignettes/fixall.bat | 26 +++++++++------- Epi-2.58/Epi/vignettes/mvall.bat | 8 ++--- Epi-2.58/Epi/vignettes/rwall.bat | 3 + 24 files changed, 83 insertions(+), 76 deletions(-)
Title: Time Series and Econometric Modeling
Description: Time series analysis, (dis)aggregation and manipulation, e.g. time series extension, merge, projection, lag, lead, delta, moving and cumulative average and product, selection by index, date and year-period, conversion to daily, monthly, quarterly, (semi)annually. Simultaneous equation models definition, estimation, simulation and forecasting with coefficient restrictions, error autocorrelation, exogenization, add-factors, impact and interim multipliers analysis, conditional equation evaluation, rational expectations, endogenous targeting and model renormalization, structural stability, stochastic simulation and forecast, optimal control.
Author: Andrea Luciani [aut, cre] ,
Roberto Stok [aut],
Bank of Italy [cph]
Maintainer: Andrea Luciani <andrea.luciani@bancaditalia.it>
Diff between bimets versions 4.0.2 dated 2024-08-16 and 4.0.3 dated 2024-11-25
DESCRIPTION | 8 ++++---- MD5 | 27 ++++++++++++++------------- NEWS.md | 7 +++++++ R/bimets_model_functions.R | 10 +++++----- R/bimets_ts_functions.R | 4 +--- R/sysdata.rda |binary build/vignette.rds |binary data/FRB__MCAP__WP__MODEL.rda |binary data/FRB__MODEL.rda |binary data/LONGBASE.rda |binary inst/doc/bimets.pdf |binary inst/doc/frb2bimets.Rnw | 4 ++-- inst/doc/frb2bimets.pdf |binary vignettes/Thumbs.db |only vignettes/frb2bimets.Rnw | 4 ++-- 15 files changed, 35 insertions(+), 29 deletions(-)
Title: Worldwide or Coordinates-Based Heat Maps
Description: Easily plot heat maps of the world, based on continuous or categorical data. Country labels can also be added to the map.
Author: Luigi Annicchiarico [cre, aut]
Maintainer: Luigi Annicchiarico <luigi.annic@gmail.com>
Diff between WorldMapR versions 0.1.3 dated 2024-11-13 and 1.0.1 dated 2024-11-25
DESCRIPTION | 6 MD5 | 34 ++--- NAMESPACE | 2 NEWS.md | 8 + R/WorldMapR-package.R |only R/geometries_data.R | 6 R/globals.R | 1 R/worldplot.R | 49 +++++-- R/worldplotCat.R | 31 ++-- README.md | 11 - inst/doc/WorldMapR_Vignette.R | 50 +++++-- inst/doc/WorldMapR_Vignette.Rmd | 103 +++++++++++----- inst/doc/WorldMapR_Vignette.html | 247 ++++++++++++++++++++++++--------------- man/WorldMapR-package.Rd |only man/worldplot.Rd | 12 + man/worldplotCat.Rd | 12 + tests/testthat/test1.R | 14 +- tests/testthat/testCat2.R | 14 +- vignettes/WorldMapR_Vignette.Rmd | 103 +++++++++++----- 19 files changed, 467 insertions(+), 236 deletions(-)
Title: Estimation of the Structural Topic and Sentiment-Discourse Model
for Text Analysis
Description: The Structural Topic and Sentiment-Discourse (STS) model allows researchers to estimate topic models with document-level metadata that determines both topic prevalence and sentiment-discourse. The sentiment-discourse is modeled as a document-level latent variable for each topic that modulates the word frequency within a topic. These latent topic sentiment-discourse variables are controlled by the document-level metadata. The STS model can be useful for regression analysis with text data in addition to topic modeling’s traditional use of descriptive analysis. The method was developed in Chen and Mankad (2024) <doi:10.1287/mnsc.2022.00261>.
Author: Shawn Mankad [aut, cre],
Li Chen [aut]
Maintainer: Shawn Mankad <smankad@ncsu.edu>
Diff between sts versions 1.1 dated 2024-11-06 and 1.2 dated 2024-11-25
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- R/heldoutLikelihood.R | 22 ++++++++++------------ R/sts.R | 2 +- R/topicExclusivity.R | 14 +++++++------- R/topicSemanticCoherence.R | 30 +++++++++++++++++++----------- man/heldoutLikelihood.Rd | 20 +++++++------------- man/sts.Rd | 2 +- man/topicExclusivity.Rd | 10 +++------- man/topicSemanticCoherence.Rd | 24 +++++++++++++----------- 10 files changed, 74 insertions(+), 76 deletions(-)
Title: Conditional Predictive Impact
Description: A general test for conditional independence in supervised learning
algorithms as proposed by Watson & Wright (2021) <doi:10.1007/s10994-021-06030-6>.
Implements a conditional variable importance measure which can be applied to any supervised
learning algorithm and loss function. Provides statistical inference procedures without
parametric assumptions and applies equally well to continuous and categorical predictors
and outcomes.
Author: Marvin N. Wright [aut, cre] ,
David S. Watson [aut]
Maintainer: Marvin N. Wright <cran@wrig.de>
Diff between cpi versions 0.1.4 dated 2022-03-03 and 0.1.5 dated 2024-11-25
DESCRIPTION | 14 - MD5 | 24 +- NEWS.md | 4 R/cpi.R | 86 +++++++--- R/fit_learner.R | 4 README.md | 10 - build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 29 +-- inst/doc/intro.R | 4 inst/doc/intro.html | 317 +++++++++++++++++++-------------------- man/cpi.Rd | 10 - tests/testthat/test-check_args.R | 12 - 13 files changed, 281 insertions(+), 233 deletions(-)
Title: Spatial Dependence: Weighting Schemes, Statistics
Description: A collection of functions to create spatial weights matrix
objects from polygon 'contiguities', from point patterns by distance and
tessellations, for summarizing these objects, and for permitting their
use in spatial data analysis, including regional aggregation by minimum
spanning tree; a collection of tests for spatial 'autocorrelation',
including global 'Morans I' and 'Gearys C' proposed by 'Cliff' and 'Ord'
(1973, ISBN: 0850860369) and (1981, ISBN: 0850860814), 'Hubert/Mantel'
general cross product statistic, Empirical Bayes estimates and
'Assunção/Reis' (1999) <doi:10.1002/(SICI)1097-0258(19990830)18:16%3C2147::AID-SIM179%3E3.0.CO;2-I> Index, 'Getis/Ord' G ('Getis' and 'Ord' 1992)
<doi:10.1111/j.1538-4632.1992.tb00261.x> and multicoloured
join count statistics, 'APLE' ('Li 'et al.' )
<doi:10.1111/j.1538-4632.2007.00708.x>, local 'Moran's I', 'Gearys C'
('Anselin' 1995) <doi:10.1111/j.1538-4632.1995.tb00338.x> and
'Getis/Ord' G ('Ord' and 'Getis' 1995)
< [...truncated...]
Author: Roger Bivand [cre, aut] ,
Micah Altman [ctb],
Luc Anselin [ctb],
Renato Assuncao [ctb],
Anil Bera [ctb],
Olaf Berke [ctb],
F. Guillaume Blanchet [ctb],
Marilia Carvalho [ctb],
Bjarke Christensen [ctb],
Yongwan Chun [ctb],
Carsten Dormann [ctb],
Steph [...truncated...]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between spdep versions 1.3-6 dated 2024-09-13 and 1.3-7 dated 2024-11-25
DESCRIPTION | 11 - MD5 | 52 ++-- NAMESPACE | 2 NEWS.md | 13 + R/licd_boots.R | 514 +++++++++++++++++++++++++++++++++++------------- R/read.gwt2nb.R | 317 ++++++++++++++++++----------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/CO69.R | 128 +++++------ inst/doc/CO69.html | 14 - inst/doc/nb.R | 114 +++++----- inst/doc/nb.html | 3 inst/doc/nb_sf.R | 20 - inst/doc/nb_sf.Rmd | 2 inst/doc/nb_sf.html | 36 +-- inst/doc/sids.R | 10 inst/doc/sids.html | 7 inst/doc/subgraphs.R | 2 inst/doc/subgraphs.Rmd | 2 inst/doc/subgraphs.html | 13 - man/hotspotmap.Rd | 2 man/licd_multi.Rd | 5 man/localC.Rd | 467 ------------------------------------------- man/read.gwt2nb.Rd | 5 man/skater.Rd | 7 vignettes/nb_sf.Rmd | 2 vignettes/subgraphs.Rmd | 2 27 files changed, 812 insertions(+), 938 deletions(-)
Title: Panel Vector Autoregression
Description: We extend two general methods of moment estimators to panel vector
autoregression models (PVAR) with p lags of endogenous variables, predetermined
and strictly exogenous variables. This general PVAR model contains the first
difference GMM estimator by Holtz-Eakin et al. (1988) <doi:10.2307/1913103>,
Arellano and Bond (1991) <doi:10.2307/2297968> and the system GMM estimator
by Blundell and Bond (1998) <doi:10.1016/S0304-4076(98)00009-8>. We also
provide specification tests (Hansen overidentification test, lag selection
criterion and stability test of the PVAR polynomial) and classical structural
analysis for PVAR models such as orthogonal and generalized impulse response
functions, bootstrapped confidence intervals for impulse response analysis and
forecast error variance decompositions.
Author: Michael Sigmund [aut],
Robert Ferstl [aut, cre]
Maintainer: Robert Ferstl <robert.ferstl@ur.de>
Diff between panelvar versions 0.5.5 dated 2023-01-05 and 0.5.6 dated 2024-11-25
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- R/pvar-methods.R | 4 ++-- R/pvar.R | 14 ++++++++++---- R/pvarfeols-methods.R | 2 ++ R/pvarhk-methods.R | 2 ++ build/partial.rdb |binary inst/CITATION | 2 +- man/pvargmm.Rd | 4 ++-- 9 files changed, 32 insertions(+), 22 deletions(-)
Title: Markdown-Based Surveys Using 'Quarto' and 'shiny'
Description: Generate surveys using markdown and R code chunks. Surveys are composed of two files: a survey.qmd 'Quarto' file defining the survey content (pages, questions, etc), and an app.R file defining a 'shiny' app with global settings (libraries, database configuration, etc.) and server configuration options (e.g., conditional skipping / display, etc.). Survey data collected from respondents is stored in a 'PostgreSQL' database. Features include controls for conditional skip logic (skip to a page based on an answer to a question), conditional display logic (display a question based on an answer to a question), a customizable progress bar, and a wide variety of question types, including multiple choice (single choice and multiple choices), select, text, numeric, multiple choice buttons, text area, and dates. Because the surveys render into a 'shiny' app, designers can also leverage the reactive capabilities of 'shiny' to create dynamic and interactive surveys.
Author: John Paul Helveston [aut, cre, cph]
,
Pingfan Hu [aut, cph] ,
Bogdan Bunea [aut, cph] ,
Stefan Munnes [ctb]
Maintainer: John Paul Helveston <john.helveston@gmail.com>
Diff between surveydown versions 0.4.0 dated 2024-11-01 and 0.5.0 dated 2024-11-25
DESCRIPTION | 21 MD5 | 39 - NAMESPACE | 1 NEWS.md | 22 R/config.R | 489 ++++++++++++++--- R/db.R | 27 R/server.R | 1130 ++++++++++++++++++++++++----------------- R/translation.R |only R/ui.R | 101 ++- R/util.R | 113 +++- README.md | 29 - inst/doc/surveydown.R | 6 inst/doc/surveydown.Rmd | 18 inst/doc/surveydown.html | 34 - inst/js/cookies.js |only man/rmdchunks/installation.Rmd | 18 man/sd_close.Rd | 5 man/sd_create_translations.Rd |only man/sd_next.Rd | 5 man/sd_redirect.Rd | 4 man/sd_server.Rd | 24 vignettes/surveydown.Rmd | 18 22 files changed, 1426 insertions(+), 678 deletions(-)
Title: Confidence Intervals for a Binomial Proportion
Description: Twelve confidence intervals for one binomial proportion or a vector of binomial proportions are computed. The confidence intervals are: Jeffreys, Wald, Wald corrected, Wald, Blyth and Still, Agresti and Coull, Wilson, Score, Score corrected, Wald logit, Wald logit corrected, Arcsine and Exact binomial. References include, among others: Vollset, S. E. (1993). "Confidence intervals for a binomial proportion". Statistics in Medicine, 12(9): 809-824. <doi:10.1002/sim.4780120902>.
Author: Michail Tsagris [aut, cre]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between binomCI versions 1.1 dated 2023-10-02 and 1.2 dated 2024-11-25
DESCRIPTION | 9 +++++---- MD5 | 4 ++-- man/binomCI-package.Rd | 4 ++-- 3 files changed, 9 insertions(+), 8 deletions(-)
Title: Prais-Winsten Estimator for AR(1) Serial Correlation
Description: The Prais-Winsten estimator (Prais & Winsten, 1954) takes into account AR(1) serial correlation of the errors in a linear regression model. The procedure recursively estimates the coefficients and the error autocorrelation of the specified model until sufficient convergence of the AR(1) coefficient is attained.
Author: Franz X. Mohr [aut, cre]
Maintainer: Franz X. Mohr <franz.x.mohr@outlook.com>
Diff between prais versions 1.1.2 dated 2021-11-01 and 1.1.3 dated 2024-11-25
prais-1.1.2/prais/R/zzz.R |only prais-1.1.3/prais/DESCRIPTION | 26 +++++++++++++++----------- prais-1.1.3/prais/MD5 | 17 +++++++++++------ prais-1.1.3/prais/NAMESPACE | 1 - prais-1.1.3/prais/NEWS.md | 5 +++++ prais-1.1.3/prais/R/data.R |only prais-1.1.3/prais/R/prais-package.R |only prais-1.1.3/prais/R/prais_winsten.R | 3 +++ prais-1.1.3/prais/R/pw_transform.R | 2 +- prais-1.1.3/prais/build |only prais-1.1.3/prais/data |only prais-1.1.3/prais/man/barium.Rd |only prais-1.1.3/prais/man/prais-package.Rd |only 13 files changed, 35 insertions(+), 19 deletions(-)
Title: Compute Summary Measures of Health Inequality
Description: Compute 21 summary measures of health inequality and its
corresponding confidence intervals for ordered and non-ordered
dimensions using disaggregated data. Measures for ordered dimensions
(e.g., Slope Index of Inequality, Absolute Concentration Index) also
accept individual and survey data.
Author: Daniel A. Antiporta [aut] ,
Patricia Menendez [aut] ,
Katherine Kirkby [aut, cre] ,
Ahmad Hosseinpoor [aut] ,
World Health Organization [cph]
Maintainer: Katherine Kirkby <kirkbyk@who.int>
Diff between healthequal versions 1.0.0 dated 2024-05-02 and 1.0.1 dated 2024-11-25
DESCRIPTION | 6 MD5 | 134 ++++---- NEWS.md | 25 + R/aci.R | 397 ++++++++++++------------ R/bgsd.R | 214 +++++++----- R/bgv.R | 125 +++---- R/covar.R | 226 ++++++++----- R/d.R | 218 +++++++------ R/idisu.R | 240 ++++++++------ R/idisw.R | 209 +++++++----- R/mdbu.R | 227 ++++++++----- R/mdbw.R | 229 ++++++++----- R/mdmu.R | 250 ++++++++------- R/mdmw.R | 208 +++++++----- R/mdru.R | 244 ++++++++------ R/mdrw.R | 245 ++++++++------ R/mld.R | 141 ++++---- R/paf.R | 234 ++++++++------ R/parisk.R | 249 ++++++++------- R/r.R | 229 +++++++------ R/rci.R | 332 ++++++++++---------- R/rii.R | 544 +++++++++++++++++---------------- R/sii.R | 370 ++++++++++++---------- R/ti.R | 145 ++++---- README.md | 27 - build/vignette.rds |binary data/IndividualSample.rda |binary data/NonorderedSample.rda |binary data/NonorderedSampleMultipleind.rda |binary inst/doc/healthequal-package-demo.R | 65 +-- inst/doc/healthequal-package-demo.Rmd | 71 +--- inst/doc/healthequal-package-demo.html | 192 +++++------ man/aci.Rd | 79 ++-- man/bgsd.Rd | 82 +++- man/bgv.Rd | 58 +-- man/covar.Rd | 95 +++-- man/d.Rd | 92 +++-- man/idisu.Rd | 87 ++--- man/idisw.Rd | 85 +++-- man/mdbu.Rd | 94 +++-- man/mdbw.Rd | 95 +++-- man/mdmu.Rd | 96 +++-- man/mdmw.Rd | 88 +++-- man/mdru.Rd | 79 ++-- man/mdrw.Rd | 85 ++--- man/mld.Rd | 67 ++-- man/paf.Rd | 135 ++++---- man/parisk.Rd | 121 +++---- man/r.Rd | 96 +++-- man/rci.Rd | 110 +++--- man/rii.Rd | 124 +++---- man/sii.Rd | 109 +++--- man/ti.Rd | 69 ++-- tests/testthat/test-idisu.R | 6 tests/testthat/test-idisw.R | 10 tests/testthat/test-mdbu.R | 3 tests/testthat/test-mdbw.R | 3 tests/testthat/test-mdru.R | 3 tests/testthat/test-mdrw.R | 3 tests/testthat/test-mld.R | 2 tests/testthat/test-paf-nonordered.R | 4 tests/testthat/test-paf.R | 2 tests/testthat/test-par-nonordered.R | 4 tests/testthat/test-parisk.R | 2 tests/testthat/test-rci.R | 2 tests/testthat/test-rii.R | 2 tests/testthat/test-sii.R | 4 vignettes/healthequal-package-demo.Rmd | 71 +--- 68 files changed, 4358 insertions(+), 3505 deletions(-)
Title: Easy Study of Patient DICOM Data in Oncology
Description: Exploitation, processing and 2D-3D visualization of DICOM-RT files (structures, dosimetry, imagery) for medical physics and clinical research, in a patient-oriented perspective.
Author: Cathy Fontbonne [aut, cre] ,
Jean-Marc Fontbonne [aut] ,
Nathan Azemar [ctb]
Maintainer: Cathy Fontbonne <contact.espadon@lpccaen.in2p3.fr>
Diff between espadon versions 1.8.0 dated 2024-09-26 and 1.9.0 dated 2024-11-25
DESCRIPTION | 6 MD5 | 38 ++- NAMESPACE | 1 R/bin_shape.R | 178 ++++++++++++------ R/espadon_hidden.R | 2 R/export.R | 6 R/obj_create.R | 2 R/struct_create.R |only R/struct_from_mesh.R | 2 R/vol_copy.R | 1 build/partial.rdb |binary build/stage23.rdb |binary build/vignette.rds |binary inst/doc/espadon_overview.R | 404 ++++++++++++++++++++--------------------- inst/doc/espadon_overview.html | 4 man/bin.cuboid.Rd | 65 ++---- man/obj.create.Rd | 3 man/struct.create.Rd |only man/struct.from.mesh.Rd | 3 man/vol.copy.Rd | 3 src/getvaluefromijkC.cpp | 22 ++ 21 files changed, 413 insertions(+), 327 deletions(-)
More information about ClinTrialPredict at CRAN
Permanent link
Title: Genotype Imputation and Population Genomics Efficiently from
Variant Call Formatted (VCF) Files
Description: Tools for efficient processing of large, whole genome genotype data sets in variant call format (VCF). It includes several functions to calculate commonly used population genomic metrics and a method for reference panel free genotype imputation, which is described in the preprint Gurke & Mayer (2024) <doi:10.22541/au.172515591.10119928/v1>.
Author: Marie Gurke [aut, cre]
Maintainer: Marie Gurke <margurke@gmail.com>
Diff between GenoPop versions 0.9.3 dated 2024-09-11 and 1.0.0 dated 2024-11-25
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/convert_gt_data.R | 7 +++++-- R/pop_genomics.R | 21 ++++++++++----------- README.md | 29 ----------------------------- man/Dxy.Rd | 4 ++-- man/Pi.Rd | 4 ++-- man/TajimasD.Rd | 4 ++-- man/WattersonsTheta.Rd | 4 ++-- 9 files changed, 35 insertions(+), 62 deletions(-)
Title: Spatial Data Science Complementary Features
Description: Wrapping and supplementing commonly used functions in the R ecosystem related to spatial data science,
while serving as a basis for other packages maintained by Wenbo Lv.
Author: Wenbo Lv [aut, cre, cph]
Maintainer: Wenbo Lv <lyu.geosocial@gmail.com>
Diff between sdsfun versions 0.4.3 dated 2024-11-15 and 0.5.0 dated 2024-11-25
DESCRIPTION | 8 MD5 | 52 ++--- NAMESPACE | 3 NEWS.md | 146 +++++++------- R/RcppExports.R | 8 R/sf_helpers.R | 387 +++++++++++++++++++++----------------- R/spdep_helpers.R | 437 +++++++++++++++++++++----------------------- R/spvar.R | 22 ++ R/stratification.R |only R/utils.R | 6 R/vector_toolkits.R | 46 ---- man/discretize_vector.Rd | 2 man/formula_varname.Rd | 6 man/hclustgeo_disc.Rd |only man/sf_coordinates.Rd | 3 man/sf_distance_matrix.Rd | 3 man/sf_geometry_name.Rd | 3 man/sf_geometry_type.Rd | 3 man/sf_gk_proj_cgcs2000.Rd |only man/sf_utm_proj_wgs84.Rd | 6 man/sf_voronoi_diagram.Rd | 3 man/spade_psd.Rd |only man/spdep_contiguity_swm.Rd | 4 man/spdep_distance_swm.Rd | 4 man/spdep_lmtest.Rd | 4 man/spdep_nb.Rd | 4 man/spdep_skater.Rd | 3 src/HClustGeo.cpp |only src/RcppExports.cpp | 30 +++ src/SPADE_PSD.cpp |only 30 files changed, 618 insertions(+), 575 deletions(-)
Title: Batch Experiments for 'mlr3'
Description: Extends the 'mlr3' package with a connector to the package
'batchtools'. This allows to run large-scale benchmark experiments on
scheduled high-performance computing clusters.
Author: Marc Becker [cre, aut] ,
Michel Lang [aut] ,
Toby Hocking [ctb]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3batchmark versions 0.1.1 dated 2023-11-17 and 0.2.0 dated 2024-11-25
DESCRIPTION | 19 +++++--- MD5 | 23 +++++----- NEWS.md | 10 ++++ R/assertions.R |only R/batchmark.R | 49 +++++++++++++++++----- R/reduceResultsBatchmark.R | 25 +++++++++-- R/worker.R | 11 ++++- R/zzz.R | 5 ++ man/batchmark.Rd | 13 +++++ man/mlr3batchmark-package.Rd | 5 ++ man/reduceResultsBatchmark.Rd | 16 +++++-- tests/testthat/test_batchmark.R | 59 +++++++++++++++++++++++++++ tests/testthat/test_reduceResultsBatchmark.R | 29 ++++++++++++- 13 files changed, 223 insertions(+), 41 deletions(-)
Title: Download and Visualize Essential Climate Change Data
Description: Provides easy access to essential climate change datasets to non-climate experts. Users can download the latest raw data from authoritative sources and view it via pre-defined 'ggplot2' charts. Datasets include atmospheric CO2, methane, emissions, instrumental and proxy temperature records, sea levels, Arctic/Antarctic sea-ice, Hurricanes, and Paleoclimate data. Sources include: NOAA Mauna Loa Laboratory <https://gml.noaa.gov/ccgg/trends/data.html>, Global Carbon Project <https://www.globalcarbonproject.org/carbonbudget/>, NASA GISTEMP <https://data.giss.nasa.gov/gistemp/>, National Snow and Sea Ice Data Center <https://nsidc.org/home>, CSIRO <https://research.csiro.au/slrwavescoast/sea-level/measurements-and-data/sea-level-data/>, NOAA Laboratory for Satellite Altimetry <https://www.star.nesdis.noaa.gov/socd/lsa/SeaLevelRise/> and HURDAT Atlantic Hurricane Database <https://www.aoml.noaa.gov/hrd/hurdat/Data_Storm.html>, Vostok Paleo carbon dio [...truncated...]
Author: Hernando Cortina [aut, cre]
Maintainer: Hernando Cortina <hch@alum.mit.edu>
Diff between hockeystick versions 0.8.4 dated 2024-03-10 and 0.8.5 dated 2024-11-25
DESCRIPTION | 8 LICENSE | 4 MD5 | 118 ++--- NAMESPACE | 156 +++---- NEWS.md | 155 +++---- R/2kyears_temp.R | 258 ++++++------ R/carbon.R | 4 R/daily_temp.R | 692 +++++++++++++++++++--------------- R/emissions.R | 448 +++++++++++----------- R/extra_viz.R | 476 ++++++++++++++--------- R/globalvars.R | 10 R/hurricanes.R | 364 ++++++++--------- R/icecurves.R | 320 +++++++-------- R/instrumental_temp.R | 500 ++++++++++++------------ R/methane.R | 254 ++++++------ R/paleo.R | 276 ++++++------- R/seaice.R | 280 ++++++------- R/zzz.R | 10 README.md | 584 ++++++++++++++-------------- build/partial.rdb |binary inst/WORDLIST | 2 man/emissions_map.Rd | 98 ++-- man/figures/README-carbon-1.png |binary man/figures/README-dailytemp-1.png |binary man/figures/README-emissions-1.png |binary man/figures/README-emissions-2.png |binary man/figures/README-emissionsmap-1.png |binary man/figures/README-hurricanes-1.png |binary man/figures/README-hurricanes-2.png |binary man/figures/README-icecurves-1.png |binary man/figures/README-methane-1.png |binary man/figures/README-si-1.png |binary man/figures/README-stripes-1.png |binary man/figures/README-stripes2-1.png |binary man/figures/README-temp-1.png |binary man/figures/README-tempcarbon-1.png |only man/get_dailytemp.Rd | 140 +++--- man/get_dailytempcop.Rd |only man/get_emissions.Rd | 96 ++-- man/get_icecurves.Rd | 2 man/get_paleo.Rd | 102 ++--- man/get_seaice.Rd | 2 man/get_temp2k.Rd | 2 man/hockeystick-package.Rd | 52 +- man/merge_carbontemp.Rd |only man/plot_carbon.Rd | 86 ++-- man/plot_carbontemp.Rd |only man/plot_dailytemp.Rd | 121 +++-- man/plot_emissions.Rd | 136 +++--- man/plot_emissions_with_land.Rd | 126 +++--- man/plot_hurricane_nrg.Rd | 86 ++-- man/plot_hurricanes.Rd | 88 ++-- man/plot_icecurves.Rd | 84 ++-- man/plot_methane.Rd | 86 ++-- man/plot_paleo.Rd | 90 ++-- man/plot_seaice.Rd | 86 ++-- man/plot_sealevel.Rd | 82 ++-- man/plot_temp.Rd | 82 ++-- man/plot_temp2k.Rd | 100 ++-- man/plot_temp_monthly.Rd | 82 ++-- man/plot_temp_scatter.Rd | 91 ++-- tests/spelling.R | 6 62 files changed, 3528 insertions(+), 3317 deletions(-)
Title: Evaluation of 3D Meteorological and Air Quality Models
Description: Provides tools for post-process, evaluate and visualize results from 3d Meteorological and Air Quality models against point observations (i.e. surface stations) and grid (i.e. satellite) observations.
Author: Daniel Schuch [aut, cre]
Maintainer: Daniel Schuch <underschuch@gmail.com>
Diff between eva3dm versions 0.99 dated 2024-11-21 and 0.99.1 dated 2024-11-25
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 19 +++++++++++-------- R/cate.R | 3 ++- R/extract_mean.R | 4 ++-- man/cate.Rd | 2 +- tests/testthat/test-rast.R | 9 +++++++-- tests/testthat/test-utils.R | 10 ++++++++-- 8 files changed, 42 insertions(+), 27 deletions(-)
Title: Relational Data Models
Description: Provides tools for working with multiple related
tables, stored as data frames or in a relational database. Multiple
tables (data and metadata) are stored in a compound object, which can
then be manipulated with a pipe-friendly syntax.
Author: Tobias Schieferdecker [aut],
Kirill Mueller [aut, cre] ,
Antoine Fabri [ctb],
Darko Bergant [aut],
Katharina Brunner [ctb],
James Wondrasek [ctb],
Indrajeet Patil [ctb] ,
Maelle Salmon [ctb] ,
energie360 AG [fnd],
cynkra GmbH [fnd, cph]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between dm versions 1.0.10 dated 2024-01-21 and 1.0.11 dated 2024-11-25
DESCRIPTION | 26 +-- MD5 | 216 +++++++++++++++--------------- NEWS.md | 25 +++ R/build_copy_queries.R | 2 R/db-helpers.R | 19 ++ R/db-interface.R | 8 - R/dm_from_con.R | 10 - R/dm_sql.R | 4 R/draw-dm.R | 2 R/financial-db-con.R | 8 - R/financial.R | 2 R/learn.R | 2 R/meta.R | 11 + R/mssql.R | 2 R/schema.R | 4 R/select.R | 11 - R/validate.R | 2 R/zzx-deprecated.R | 3 README.md | 263 ++++++++++++++++++++++--------------- build/vignette.rds |binary demo/milano.R | 4 demo/neuchatel.R | 4 inst/cheatsheet.css | 41 ++--- inst/doc/dm.R | 126 ++++++++--------- inst/doc/dm.Rmd | 4 inst/doc/dm.html | 12 - inst/doc/howto-dm-copy.R | 196 +++++++++++++-------------- inst/doc/howto-dm-copy.Rmd | 2 inst/doc/howto-dm-copy.html | 10 - inst/doc/howto-dm-db.R | 230 ++++++++++++++++---------------- inst/doc/howto-dm-db.Rmd | 14 - inst/doc/howto-dm-db.html | 22 +-- inst/doc/howto-dm-df.R | 116 ++++++++-------- inst/doc/howto-dm-df.html | 8 - inst/doc/howto-dm-rows.R | 186 +++++++++++++------------- inst/doc/howto-dm-rows.html | 8 - inst/doc/howto-dm-theory.R | 96 ++++++------- inst/doc/howto-dm-theory.html | 8 - inst/doc/tech-dm-cdm.R | 12 - inst/doc/tech-dm-cdm.html | 8 - inst/doc/tech-dm-class.R | 144 ++++++++++---------- inst/doc/tech-dm-class.html | 8 - inst/doc/tech-dm-draw.R | 50 +++---- inst/doc/tech-dm-draw.html | 8 - inst/doc/tech-dm-filter.R | 100 +++++++------- inst/doc/tech-dm-filter.html | 8 - inst/doc/tech-dm-join.R | 70 ++++----- inst/doc/tech-dm-join.html | 8 - inst/doc/tech-dm-keyed.R | 224 +++++++++++++++---------------- inst/doc/tech-dm-keyed.html | 4 inst/doc/tech-dm-low-level.R | 108 ++++++++------- inst/doc/tech-dm-low-level.html | 8 - inst/doc/tech-dm-zoom.R | 218 +++++++++++++++--------------- inst/doc/tech-dm-zoom.html | 4 man/copy_dm_to.Rd | 8 - man/db_schema_drop.Rd | 2 man/deprecated.Rd | 5 man/dm.Rd | 4 man/dm_add_fk.Rd | 2 man/dm_add_pk.Rd | 2 man/dm_add_uk.Rd | 2 man/dm_deconstruct.Rd | 2 man/dm_disambiguate_cols.Rd | 2 man/dm_draw.Rd | 2 man/dm_enum_fk_candidates.Rd | 2 man/dm_enum_pk_candidates.Rd | 4 man/dm_examine_cardinalities.Rd | 4 man/dm_examine_constraints.Rd | 4 man/dm_filter.Rd | 2 man/dm_financial.Rd | 4 man/dm_flatten_to_tbl.Rd | 2 man/dm_from_con.Rd | 14 - man/dm_from_src.Rd | 6 man/dm_get_all_fks.Rd | 2 man/dm_get_all_pks.Rd | 2 man/dm_get_all_uks.Rd | 2 man/dm_get_con.Rd | 2 man/dm_has_pk.Rd | 2 man/dm_mutate_tbl.Rd | 2 man/dm_nrow.Rd | 2 man/dm_nycflights13.Rd | 2 man/dm_paste.Rd | 2 man/dm_pixarfilms.Rd | 2 man/dm_ptype.Rd | 2 man/dm_rename.Rd | 10 - man/dm_rm_fk.Rd | 2 man/dm_rm_pk.Rd | 2 man/dm_select.Rd | 10 - man/dm_select_tbl.Rd | 4 man/dm_set_colors.Rd | 4 man/dm_set_table_description.Rd | 2 man/dm_sql.Rd | 2 man/dm_zoom_to.Rd | 4 man/dplyr_join.Rd | 2 man/dplyr_table_manipulation.Rd | 2 man/json_nest.Rd | 2 man/json_pack.Rd | 2 man/materialize.Rd | 2 man/pull_tbl.Rd | 2 man/rows-dm.Rd | 2 man/tidyr_table_manipulation.Rd | 2 man/utils_table_manipulation.Rd | 2 tests/testthat/helper-src.R | 2 tests/testthat/test-db-interface.R | 17 -- tests/testthat/test-learn.R | 5 tests/testthat/test_dm_from_con.R | 2 vignettes/dm.Rmd | 4 vignettes/howto-dm-copy.Rmd | 2 vignettes/howto-dm-db.Rmd | 14 - 109 files changed, 1504 insertions(+), 1384 deletions(-)
Title: Multivariate Conditional Volatility Modelling and Forecasting
Description: Methods and tools for estimating, simulating and forecasting of so-called BEKK-models (named after Baba, Engle, Kraft and Kroner) based on the fast Berndt–Hall–Hall–Hausman (BHHH) algorithm described in Hafner and Herwartz (2008) <doi:10.1007/s00184-007-0130-y>. For an overview, we refer the reader to Fülle et al. (2024) <doi:10.18637/jss.v111.i04>.
Author: Markus J. Fuelle [aut, cre],
Alexander Lange [aut],
Christian M. Hafner [aut],
Helmut Herwartz [aut]
Maintainer: Markus J. Fuelle <markus.fuelle@gmail.com>
Diff between BEKKs versions 1.4.4 dated 2024-01-14 and 1.4.5 dated 2024-11-25
BEKKs-1.4.4/BEKKs/build/BEKKs.pdf |only BEKKs-1.4.5/BEKKs/DESCRIPTION | 14 BEKKs-1.4.5/BEKKs/LICENSE | 4 BEKKs-1.4.5/BEKKs/MD5 | 127 BEKKs-1.4.5/BEKKs/NAMESPACE | 136 BEKKs-1.4.5/BEKKs/R/BEKKs.R | 92 BEKKs-1.4.5/BEKKs/R/Portmanteau_test.R | 158 BEKKs-1.4.5/BEKKs/R/RcppExports.R | 494 +- BEKKs-1.4.5/BEKKs/R/VaR.R | 664 +-- BEKKs-1.4.5/BEKKs/R/backtest.R | 430 +- BEKKs-1.4.5/BEKKs/R/bekk_fit.R | 1843 ++++---- BEKKs-1.4.5/BEKKs/R/bekk_fit_methods.R | 418 +- BEKKs-1.4.5/BEKKs/R/bekk_forecast.R | 2064 +++++----- BEKKs-1.4.5/BEKKs/R/bekk_functions.R | 383 - BEKKs-1.4.5/BEKKs/R/bekk_mc_eval.R | 90 BEKKs-1.4.5/BEKKs/R/bekk_sim.R | 304 - BEKKs-1.4.5/BEKKs/R/bekk_spec.R | 190 BEKKs-1.4.5/BEKKs/R/bekk_starting_values.R | 812 +-- BEKKs-1.4.5/BEKKs/R/extract_csd.R | 32 BEKKs-1.4.5/BEKKs/R/matrix_stuff.R | 198 BEKKs-1.4.5/BEKKs/R/plot.backtest.R | 172 BEKKs-1.4.5/BEKKs/R/plot.bekk.R | 150 BEKKs-1.4.5/BEKKs/R/plot.var.R | 276 - BEKKs-1.4.5/BEKKs/R/plot.virf.R | 130 BEKKs-1.4.5/BEKKs/R/summary.backtest.R | 266 - BEKKs-1.4.5/BEKKs/R/summary.bekk.R | 426 +- BEKKs-1.4.5/BEKKs/R/summary.var.R | 68 BEKKs-1.4.5/BEKKs/R/virf.R | 706 +-- BEKKs-1.4.5/BEKKs/R/zzz.R | 20 BEKKs-1.4.5/BEKKs/build/stage23.rdb |only BEKKs-1.4.5/BEKKs/inst |only BEKKs-1.4.5/BEKKs/man/BEKKs.Rd | 106 BEKKs-1.4.5/BEKKs/man/GoldStocksBonds.Rd | 54 BEKKs-1.4.5/BEKKs/man/StocksBonds.Rd | 50 BEKKs-1.4.5/BEKKs/man/VaR.Rd | 94 BEKKs-1.4.5/BEKKs/man/backtest.Rd | 112 BEKKs-1.4.5/BEKKs/man/bekk_fit.Rd | 149 BEKKs-1.4.5/BEKKs/man/bekk_spec.Rd | 124 BEKKs-1.4.5/BEKKs/man/portmanteau.test.Rd | 50 BEKKs-1.4.5/BEKKs/man/predict.Rd | 98 BEKKs-1.4.5/BEKKs/man/simulate.Rd | 102 BEKKs-1.4.5/BEKKs/man/virf.Rd | 106 BEKKs-1.4.5/BEKKs/src/BekkFunctions.cpp | 14 BEKKs-1.4.5/BEKKs/src/ScalarBEKK.cpp | 8 BEKKs-1.4.5/BEKKs/tests/testthat.R | 8 BEKKs-1.4.5/BEKKs/tests/testthat/test-Grid_Search.R | 16 BEKKs-1.4.5/BEKKs/tests/testthat/test-asymmetric_grid_search.R | 40 BEKKs-1.4.5/BEKKs/tests/testthat/test-bekk_fit.R | 198 BEKKs-1.4.5/BEKKs/tests/testthat/test-bekk_forecast.R | 294 - BEKKs-1.4.5/BEKKs/tests/testthat/test-bekk_sim.R | 118 BEKKs-1.4.5/BEKKs/tests/testthat/test-bhh_bekk.R | 18 BEKKs-1.4.5/BEKKs/tests/testthat/test-commutation_mat.R | 52 BEKKs-1.4.5/BEKKs/tests/testthat/test-duplication_mat.R | 52 BEKKs-1.4.5/BEKKs/tests/testthat/test-elimination_mat.R | 80 BEKKs-1.4.5/BEKKs/tests/testthat/test-inv_gen.R | 24 BEKKs-1.4.5/BEKKs/tests/testthat/test-loglike_bekk.R | 46 BEKKs-1.4.5/BEKKs/tests/testthat/test-loglike_bekk_asymm.R | 74 BEKKs-1.4.5/BEKKs/tests/testthat/test-score_bekk.R | 38 BEKKs-1.4.5/BEKKs/tests/testthat/test-score_dbekk.R | 34 BEKKs-1.4.5/BEKKs/tests/testthat/test-score_sbekk.R | 34 BEKKs-1.4.5/BEKKs/tests/testthat/test-valid_asymm_bekk.R | 78 BEKKs-1.4.5/BEKKs/tests/testthat/test-valid_bekk.R | 126 BEKKs-1.4.5/BEKKs/tests/testthat/test-virf.R | 32 BEKKs-1.4.5/BEKKs/tests/testthat/test_score_bekk_asymm.R | 48 BEKKs-1.4.5/BEKKs/tests/testthat/test_score_dbekk_asymm.R | 44 BEKKs-1.4.5/BEKKs/tests/testthat/test_score_sbekk_asymm.R | 38 66 files changed, 6619 insertions(+), 6607 deletions(-)
Title: Computing MSPE Estimates in Small Area Estimation
Description: Compute various common mean squared predictive error (MSPE) estimators, as well as several existing variance component predictors as a byproduct, for FH model (Fay and Herriot, 1979) and NER model (Battese et al., 1988) in small area estimation.
Author: Peiwen Xiao [aut, cre],
Xiaohui Liu [aut],
Yu Zhang [aut],
Yuzi Liu [aut],
Jiming Jiang [ths]
Maintainer: Peiwen Xiao <2569613200@qq.com>
Diff between saeMSPE versions 1.3 dated 2024-11-18 and 1.4 dated 2024-11-25
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/mspeNERlin.R | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: In-Text Resize for Images, Tables and Fancy Resize Containers in
'shiny', 'rmarkdown' and 'quarto' Documents
Description: Automatic resizing toolbar for containers, images and tables. Various resizer or expandable container functionalities are also included. Most suitable to include in 'shiny', 'markdown' and 'quarto' documents.
Author: Obinna Obianom [aut, cre]
Maintainer: Obinna Obianom <idonshayo@gmail.com>
Diff between r2resize versions 1.9.1 dated 2024-07-29 and 1.9.2 dated 2024-11-25
DESCRIPTION | 6 +-- MD5 | 20 +++++++----- R/containerResizer.R | 25 ++++++++++++++- build/vignette.rds |binary inst/doc/example_frequently_asked_r2resize.html | 4 +- inst/doc/introduction_r2resize.html | 4 +- inst/doc/resizable_containers_split_screen_r2resize.html | 4 +- inst/doc/split_card_html_r2resize.R |only inst/doc/split_card_html_r2resize.Rmd |only inst/doc/split_card_html_r2resize.html |only inst/themes/splitCard.css | 2 - man/splitCard.Rd | 23 +++++++++++++ vignettes/split_card_html_r2resize.Rmd |only 13 files changed, 68 insertions(+), 20 deletions(-)
Title: Bayesian Spectral Inference for Time Series
Description: Implementations of Bayesian parametric, nonparametric and semiparametric procedures for univariate and multivariate time series. The package is based on the methods presented in C. Kirch et al (2018) <doi:10.1214/18-BA1126>, A. Meier (2018) <https://opendata.uni-halle.de//handle/1981185920/13470> and Y. Tang et al (2023) <doi:10.48550/arXiv.2303.11561>. It was supported by DFG grants KI 1443/3-1 and KI 1443/3-2.
Author: Alexander Meier [aut],
Claudia Kirch [aut],
Matthew C. Edwards [aut],
Renate Meyer [aut, cre],
Yifu Tang [aut]
Maintainer: Renate Meyer <renate.meyer@auckland.ac.nz>
Diff between beyondWhittle versions 1.2.1 dated 2024-03-13 and 1.3.0 dated 2024-11-25
DESCRIPTION | 12 MD5 | 22 - NAMESPACE | 2 R/dynamicWhittle_MCMC_zigzag.R | 554 ++++++++++++++++--------------- R/dynamicWhittle_S3method.R | 8 R/dynamicWhittle_miscellanea_zigzag.R | 44 +- R/dynamicWhittle_prior_and_mcmc_params.R | 129 +++---- man/bdp_dw_prior_params_gen.Rd | 4 man/gibbs_bdp_dw.Rd | 17 man/llike_dw.Rd | 2 man/lprior_dw.Rd | 7 tests/testthat/testGibbsBDPDW.R | 2 12 files changed, 429 insertions(+), 374 deletions(-)
Title: Species Distribution Modeling
Description: Methods for species distribution modeling, that is, predicting the environmental similarity of any site to that of the locations of known occurrences of a species.
Author: Robert J. Hijmans [cre, aut] ,
Steven Phillips [aut],
John Leathwick [aut],
Jane Elith [aut]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between dismo versions 1.3-14 dated 2023-05-21 and 1.3-16 dated 2024-11-25
DESCRIPTION | 19 ++++++++++++++----- MD5 | 22 +++++++++++----------- R/maxent.predict.R | 4 +++- build/partial.rdb |binary build/vignette.rds |binary inst/doc/sdm.pdf |binary man/gbif.Rd | 2 +- man/gmap.Rd | 2 +- man/maxent.Rd | 4 +--- man/mess.Rd | 4 ++-- man/predict.Rd | 2 +- man/randomPoints.Rd | 2 +- 12 files changed, 35 insertions(+), 26 deletions(-)
Title: Leveraging Experiment Lines to Data Analytics
Description: The natural increase in the complexity of current research experiments and data demands better tools to enhance productivity in Data Analytics. The package is a framework designed to address the modern challenges in data analytics workflows. The package is inspired by Experiment Line concepts. It aims to provide seamless support for users in developing their data mining workflows by offering a uniform data model and method API. It enables the integration of various data mining activities, including data preprocessing, classification, regression, clustering, and time series prediction. It also offers options for hyper-parameter tuning and supports integration with existing libraries and languages. Overall, the package provides researchers with a comprehensive set of functionalities for data science, promoting ease of use, extensibility, and integration with various tools and libraries. Information on Experiment Line is based on Ogasawara et al. (2009) <doi:10.1007/978-3-642-02279-1_2 [...truncated...]
Author: Eduardo Ogasawara [aut, ths, cre]
,
Antonio Castro [aut, ctb],
Heraldo Borges [aut, ths],
Janio Lima [aut, ths],
Lucas Tavares [aut, ths],
Diego Carvalho [aut, ths],
Eduardo Bezerra [aut, ths],
Joel Santos [aut, ths],
Rafaelli Coutinho [aut, ths],
Fe [...truncated...]
Maintainer: Eduardo Ogasawara <eogasawara@ieee.org>
Diff between daltoolbox versions 1.0.787 dated 2024-11-03 and 1.1.727 dated 2024-11-25
DESCRIPTION | 14 ++++-- MD5 | 65 +++++++++++++++++++++++------ NAMESPACE | 45 ++++++++++++++++++++ R/cla_tune.R | 3 - R/clu_tune.R | 3 - R/globals.R | 2 R/reg_tune.R | 3 - R/trans_aae_encode.R |only R/trans_aae_encode_decode.R |only R/trans_c2den_encode.R |only R/trans_c2den_encode_decode.R |only R/trans_cae2d_encode.R |only R/trans_cae2d_encode_decode.R |only R/trans_cae_encode.R |only R/trans_cae_encode_decode.R |only R/trans_dns_encode.R |only R/trans_dns_encode_decode.R |only R/trans_lae_encode.R |only R/trans_lae_encode_decode.R |only R/trans_sae_encode.R |only R/trans_sae_encode_decode.R |only R/trans_sample_strat.R | 7 --- R/trans_van_enc_decode.R | 2 R/trans_van_encode.R | 2 R/trans_varae_encode.R |only R/trans_varae_encode_decode.R |only README.md | 12 ++--- inst/python/adv_autoencoder.py |only inst/python/autoencoder.py | 79 ++++++++++++++++++++++++------------ inst/python/conv2d_autoencoder.py |only inst/python/conv2den_autoencoder.py |only inst/python/conv_autoencoder.py |only inst/python/dns_autoencoder.py |only inst/python/lstm_autoencoder.py |only inst/python/sae_autoencoder.py |only inst/python/ts_conv1d.py | 2 inst/python/ts_lstm.py | 4 - inst/python/varae_autoencoder.py |only man/aae_encode.Rd |only man/aae_encode_decode.Rd |only man/cae2d_encode_decode.Rd |only man/cae2den_encode.Rd |only man/cae2den_encode_decode.Rd |only man/cae_encode.Rd |only man/cae_encode_decode.Rd |only man/dns_encode.Rd |only man/dns_encode_decode.Rd |only man/lae_encode.Rd |only man/lae_encode_decode.Rd |only man/sae_encode.Rd |only man/sae_encode_decode.Rd |only man/varae_encode.Rd |only man/varae_encode_decode.Rd |only 53 files changed, 168 insertions(+), 75 deletions(-)