Title: Quick and Essential 'R' Tricks for Better Scripts
Description: The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to improve your scripts. Improve the quality and reproducibility of 'R' scripts.
Author: Obinna Obianom [aut, cre],
Brice Richard [aut]
Maintainer: Obinna Obianom <idonshayo@gmail.com>
Diff between quickcode versions 1.0.2 dated 2024-11-06 and 1.0.3 dated 2024-12-01
DESCRIPTION | 8 +- MD5 | 20 +++---- NEWS.md | 4 + R/OR.R | 26 +++++++-- R/pairDist.R | 17 ++++-- inst/doc/add_today_date_to_filenames_quickcode.html | 54 ++++++++++---------- inst/doc/nullish_coalescing_operator_r.html | 4 - inst/doc/quickcode_r_introduction.html | 4 - inst/doc/track_function_usage_r.html | 4 - man/machine_learning.Rd | 17 ++++-- man/orsign.Rd | 21 +++++-- 11 files changed, 112 insertions(+), 67 deletions(-)
Title: Cyclic Coordinate Descent for Logistic, Poisson and Survival
Analysis
Description: This model fitting tool incorporates cyclic coordinate descent and
majorization-minimization approaches to fit a variety of regression models
found in large-scale observational healthcare data. Implementations focus
on computational optimization and fine-scale parallelization to yield
efficient inference in massive datasets. Please see:
Suchard, Simpson, Zorych, Ryan and Madigan (2013) <doi:10.1145/2414416.2414791>.
Author: Marc A. Suchard [aut, cre],
Martijn J. Schuemie [aut],
Trevor R. Shaddox [aut],
Yuxi Tian [aut],
Jianxiao Yang [aut],
Eric Kawaguchi [aut],
Sushil Mittal [ctb],
Observational Health Data Sciences and Informatics [cph],
Marcus Geelnard [cph, ctb] ,
Ru [...truncated...]
Maintainer: Marc A. Suchard <msuchard@ucla.edu>
Diff between Cyclops versions 3.4.1 dated 2024-06-06 and 3.5.0 dated 2024-12-01
DESCRIPTION | 8 ++++---- MD5 | 18 ++++++++++-------- NEWS.md | 7 +++++++ R/DataManagement.R | 6 +++--- R/ModelFit.R | 22 +++++++++++++++++----- R/cyclops.R | 3 +-- man/createCyclopsData.Rd | 6 +++--- man/cyclops.Rd | 30 ++++++++++++++++++++++++++++++ man/getCyclopsProfileLogLikelihood.Rd | 9 ++++++++- tests/testthat/save.R |only tests/testthat/test-recenter.R |only 11 files changed, 83 insertions(+), 26 deletions(-)
Title: Forest Mensuration and Management
Description: Processing forest inventory data with methods such as simple random sampling, stratified random sampling and systematic sampling. There are also functions for yield and growth predictions and model fitting, linear and nonlinear grouped data fitting, and statistical tests. References: Kershaw Jr., Ducey, Beers and Husch (2016). <doi:10.1002/9781118902028>.
Author: Sollano Rabelo Braga [aut, cre, cph],
Marcio Leles Romarco de Oliveira [aut],
Eric Bastos Gorgens [aut]
Maintainer: Sollano Rabelo Braga <sollanorb@gmail.com>
Diff between forestmangr versions 0.9.7 dated 2024-09-14 and 0.9.8 dated 2024-12-01
forestmangr-0.9.7/forestmangr/R/Graybill_F.R |only forestmangr-0.9.7/forestmangr/man/Graybill_F.Rd |only forestmangr-0.9.8/forestmangr/DESCRIPTION | 10 +- forestmangr-0.9.8/forestmangr/MD5 | 36 +++++----- forestmangr-0.9.8/forestmangr/NEWS.md | 3 forestmangr-0.9.8/forestmangr/R/graybill_f.R |only forestmangr-0.9.8/forestmangr/R/na_to_0.R | 13 +-- forestmangr-0.9.8/forestmangr/inst/doc/eq_group_fit_en.html | 8 +- forestmangr-0.9.8/forestmangr/inst/doc/eq_group_fit_ptbr.html | 8 +- forestmangr-0.9.8/forestmangr/inst/doc/invent_vol_plot_en.html | 4 - forestmangr-0.9.8/forestmangr/inst/doc/invent_vol_plot_ptbr.html | 4 - forestmangr-0.9.8/forestmangr/inst/doc/phyto_ana_en.html | 4 - forestmangr-0.9.8/forestmangr/inst/doc/phyto_ana_ptbr.html | 4 - forestmangr-0.9.8/forestmangr/inst/doc/sampling_en.html | 2 forestmangr-0.9.8/forestmangr/inst/doc/sampling_ptbr.html | 2 forestmangr-0.9.8/forestmangr/inst/doc/volume_est_en.html | 6 - forestmangr-0.9.8/forestmangr/inst/doc/volume_est_ptbr.html | 6 - forestmangr-0.9.8/forestmangr/inst/doc/yield_growth_en.html | 4 - forestmangr-0.9.8/forestmangr/inst/doc/yield_growth_ptbr.html | 4 - forestmangr-0.9.8/forestmangr/man/graybill_f.Rd |only forestmangr-0.9.8/forestmangr/man/na_to_0.Rd | 7 - 21 files changed, 61 insertions(+), 64 deletions(-)
Title: Fast Time Series Modeling for Seasonal Series with Exogenous
Variables
Description: An implementation of sparsity-ranked lasso and related methods
for time series data. This methodology is especially useful for
large time series with exogenous features and/or complex
seasonality. Originally described in Peterson and Cavanaugh
(2022) <doi:10.1007/s10182-021-00431-7> in the context of variable
selection with interactions and/or polynomials, ranked sparsity is
a philosophy with methods useful for variable selection in the
presence of prior informational asymmetry. This situation exists for time
series data with complex seasonality, as shown in Peterson and Cavanaugh
(2024) <doi:10.1177/1471082X231225307>, which also describes this package
in greater detail. The sparsity-ranked penalization methods for time series
implemented in 'fastTS' can fit large/complex/high-frequency time series
quickly, even with a high-dimensional exogenous feature set. The method is
considerably faster than its competitors, while often producing more
accurate predictions. Also includ [...truncated...]
Author: Ryan Andrew Peterson [aut, cre, cph]
Maintainer: Ryan Andrew Peterson <ryan.a.peterson@cuanschutz.edu>
Diff between fastTS versions 1.0.1 dated 2024-03-28 and 1.0.2 dated 2024-12-01
DESCRIPTION | 8 MD5 | 14 - NEWS.md | 5 build/vignette.rds |binary inst/doc/case_studies.html | 430 +++++++++++++++++++------------------- inst/doc/forecasting.html | 86 +++---- inst/doc/hourly_er_visits.html | 166 +++++++------- tests/testthat/test-predictions.R | 4 8 files changed, 359 insertions(+), 354 deletions(-)
Title: Customisable Ranking of Numerical and Categorical Data
Description: Provides a flexible alternative to the built-in rank() function called smartrank().
Optionally rank categorical variables by frequency (instead of in alphabetical order), and control whether ranking is based on descending/ascending order.
smartrank() is suitable for both numerical and categorical data.
Author: Sam El-Kamand [aut, cre, cph]
Maintainer: Sam El-Kamand <sam.elkamand@gmail.com>
Diff between rank versions 0.1.0 dated 2024-07-09 and 0.1.1 dated 2024-12-01
DESCRIPTION | 11 +-- MD5 | 17 +++- NEWS.md | 15 ++++ R/smartrank.R | 80 +++++++++++++-------- README.md | 104 +++++++++++++++++++++------- build |only inst |only man/smartrank.Rd | 40 ++++++++-- tests/testthat/test-smartrank.R | 146 +++++++++++++++++++++++++++++++++++++--- vignettes |only 10 files changed, 329 insertions(+), 84 deletions(-)
Title: Read Spectrometric Data and Metadata
Description: Parse various reflectance/transmittance/absorbance spectra file
formats to extract spectral data and metadata, as described in Gruson, White
& Maia (2019) <doi:10.21105/joss.01857>. Among other formats, it can import
files from 'Avantes' <https://www.avantes.com/>, 'CRAIC'
<https://www.microspectra.com/>, and 'OceanOptics'/'OceanInsight'
<https://www.oceanoptics.com/> brands.
Author: Hugo Gruson [cre, aut, cph] ,
Rafael Maia [aut, cph] ,
Thomas White [aut, cph] ,
Kotya Karapetyan [ctb, cph] )
Maintainer: Hugo Gruson <hugo.gruson+R@normalesup.org>
Diff between lightr versions 1.7.1 dated 2024-03-21 and 1.8.0 dated 2024-12-01
DESCRIPTION | 18 ++++++------ MD5 | 60 ++++++++++++++++++++-------------------- NEWS.md | 16 +++++++++- R/convert_tocsv.R | 4 +- R/get_metadata.R | 4 +- R/get_spec.R | 26 +++++++++-------- R/parse_avantes_binary.R | 14 ++++----- R/parse_avantes_converted.R | 12 ++++---- R/parse_generic.R | 14 ++++----- R/parse_jdx.R | 8 ++--- R/parse_oceanoptics_converted.R | 21 ++++++++------ R/parse_procspec.R | 10 +++--- R/parse_spc.R | 10 +++--- R/utils.R | 15 ++++++++++ README.md | 2 - build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 4 ++ inst/doc/batch_import.R | 2 - inst/doc/batch_import.html | 10 +++--- inst/doc/renormalise.Rmd | 13 ++------ inst/doc/renormalise.html | 18 ++++++------ inst/doc/true_example.Rmd | 4 +- inst/doc/true_example.html | 21 +++++++------- man/lightr-package.Rd | 2 - man/lr_parse_jaz.Rd | 6 ++-- man/lr_parse_jdx.Rd | 6 ++-- man/lr_parse_procspec.Rd | 8 ++--- man/lr_parse_spc.Rd | 2 - vignettes/renormalise.Rmd | 13 ++------ vignettes/true_example.Rmd | 4 +- 31 files changed, 184 insertions(+), 163 deletions(-)
Title: Functions Useful in the Design and ANOVA of Experiments
Description: The content falls into the following groupings: (i) Data, (ii)
Factor manipulation functions, (iii) Design functions, (iv) ANOVA functions, (v)
Matrix functions, (vi) Projector and canonical efficiency functions, and (vii)
Miscellaneous functions. There is a vignette describing how to use the
design functions for randomizing and assessing designs available as a
vignette called 'DesignNotes'. The ANOVA functions facilitate the extraction of
information when the 'Error' function has been used in the call to 'aov'.
The package 'dae' can also be installed from
<http://chris.brien.name/rpackages/>.
Author: Chris Brien [aut, cre]
Maintainer: Chris Brien <chris.brien@adelaide.edu.au>
Diff between dae versions 3.2.28 dated 2024-06-12 and 3.2.30 dated 2024-12-01
dae-3.2.28/dae/tests/testthat/testthat-problems.rds |only dae-3.2.30/dae/DESCRIPTION | 8 - dae-3.2.30/dae/MD5 | 48 ++++--- dae-3.2.30/dae/NAMESPACE | 2 dae-3.2.30/dae/R/fac.functions.r | 65 +++++++++- dae-3.2.30/dae/build/partial.rdb |binary dae-3.2.30/dae/build/vignette.rds |binary dae-3.2.30/dae/inst/NEWS.Rd | 10 + dae-3.2.30/dae/inst/doc/DesignNotes.pdf |binary dae-3.2.30/dae/inst/doc/dae-manual.pdf |binary dae-3.2.30/dae/man/as.numfac.Rd | 41 +++++- dae-3.2.30/dae/man/dae-package.Rd | 23 +-- dae-3.2.30/dae/man/designBlocksGGPlot.Rd | 2 dae-3.2.30/dae/man/designGGPlot.Rd | 11 - dae-3.2.30/dae/man/designPlotlabels.Rd | 8 - dae-3.2.30/dae/man/fac.multinested.Rd | 2 dae-3.2.30/dae/man/interaction.ABC.plot.Rd | 6 dae-3.2.30/dae/tests/testthat/_snaps/testDesignGGPlot/colfacets-bottom-switch-placement.new.svg |only dae-3.2.30/dae/tests/testthat/_snaps/testDesignGGPlot/colfacets-bottom.new.svg |only dae-3.2.30/dae/tests/testthat/_snaps/testDesignGGPlot/colfacets-placement.new.svg |only dae-3.2.30/dae/tests/testthat/_snaps/testDesignGGPlot/rowfacets-switch-placement.new.svg |only dae-3.2.30/dae/tests/testthat/_snaps/testDesignGGPlot/rowfacets-switch.new.svg |only dae-3.2.30/dae/tests/testthat/_snaps/testDesignGGPlot/rows-and-columns-indexed-by-2-factors.new.svg |only dae-3.2.30/dae/tests/testthat/_snaps/testDesignGGPlot/using-facetstrips-place-from-designblocksggplot.new.svg |only dae-3.2.30/dae/tests/testthat/testCanon.r | 6 dae-3.2.30/dae/tests/testthat/testFac.r | 49 +++++++ dae-3.2.30/dae/tests/testthat/testInteractionABCplot.r | 6 dae-3.2.30/dae/tests/testthat/testOneStructure.r | 2 dae-3.2.30/dae/tests/testthat/testSources.r | 14 -- 29 files changed, 224 insertions(+), 79 deletions(-)
Title: A Collection of Scoring Functions for Assessing Point Forecasts
Description: Implements multiple consistent scoring functions
(Gneiting T (2011) <doi:10.1198/jasa.2011.r10138>) for assessing point
forecasts and point predictions. Detailed documentation of scoring
functions' properties is included for facilitating interpretation of
results.
Author: Hristos Tyralis [aut, cre] ,
Georgia Papacharalampous [aut]
Maintainer: Hristos Tyralis <montchrister@gmail.com>
Diff between scoringfunctions versions 0.0.7 dated 2024-11-10 and 1.0 dated 2024-12-01
DESCRIPTION | 8 +- MD5 | 140 +++++++++++++++++++++++--------------- NAMESPACE | 17 ++++ R/aerr_sf.R | 20 ----- R/aperr_sf.R | 20 ----- R/bmedian_sf.R | 21 ----- R/bregman1_sf.R | 26 ------- R/bregman2_sf.R | 30 -------- R/bregman3_sf.R | 28 ------- R/bregman4_sf.R | 28 ------- R/capping_function.R | 17 ---- R/errorspread_sf.R |only R/expectile_rs.R |only R/expectile_sf.R | 24 ------ R/ghuber_sf.R | 24 ------ R/gpl1_sf.R | 28 ------- R/gpl2_sf.R | 26 ------- R/huber_rs.R |only R/huber_sf.R | 20 ----- R/hubermean_if.R |only R/huberquantile_if.R |only R/linex_sf.R |only R/lqmean_sf.R |only R/lqquantile_sf.R |only R/mae.R |only R/maelog_sf.R | 19 ----- R/maesd_sf.R | 19 ----- R/mape.R |only R/mre.R |only R/mse.R |only R/mspe.R |only R/msre.R |only R/nse.R |only R/obsweighted_sf.R | 20 ----- R/quantile_if.R | 2 R/quantile_level.R |only R/quantile_rs.R |only R/quantile_sf.R | 24 ------ R/relerr_sf.R | 20 ----- R/serr_sf.R | 19 ----- R/sperr_sf.R | 21 ----- R/srelerr_sf.R | 20 ----- man/aerr_sf.Rd | 4 - man/aperr_sf.Rd | 4 - man/bmedian_sf.Rd | 4 - man/bregman1_sf.Rd | 4 - man/bregman2_sf.Rd | 4 - man/bregman3_sf.Rd | 4 - man/bregman4_sf.Rd | 4 - man/errorspread_sf.Rd |only man/expectile_if.Rd | 4 - man/expectile_rs.Rd |only man/expectile_sf.Rd | 4 - man/ghuber_sf.Rd | 4 - man/gpl1_sf.Rd | 4 - man/gpl2_sf.Rd | 4 - man/huber_rs.Rd |only man/huber_sf.Rd | 4 - man/hubermean_if.Rd |only man/huberquantile_if.Rd |only man/interval_sf.Rd | 4 - man/linex_sf.Rd |only man/lqmean_sf.Rd |only man/lqquantile_sf.Rd |only man/mae.Rd |only man/maelog_sf.Rd | 4 - man/maesd_sf.Rd | 4 - man/mape.Rd |only man/mean_if.Rd | 4 - man/mre.Rd |only man/mse.Rd |only man/mspe.Rd |only man/msre.Rd |only man/mv_if.Rd | 6 - man/mv_sf.Rd | 6 - man/nmoment_if.Rd | 4 - man/nmoment_sf.Rd | 4 - man/nse.Rd |only man/obsweighted_sf.Rd | 4 - man/quantile_if.Rd | 4 - man/quantile_level.Rd |only man/quantile_rs.Rd |only man/quantile_sf.Rd | 4 - man/relerr_sf.Rd | 4 - man/scoringfunctions-package.Rd | 147 ++++++++++++++++++++++++++++++++++------ man/serr_sf.Rd | 4 - man/sperr_sf.Rd | 4 - man/srelerr_sf.Rd | 4 - 88 files changed, 293 insertions(+), 611 deletions(-)
More information about scoringfunctions at CRAN
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