Title: Enhancing the 'parallel' Package
Description: Utility functions that enhance the 'parallel' package and support the built-in parallel backends of the 'future' package. For example, availableCores() gives the number of CPU cores available to your R process as given by the operating system, 'cgroups' and Linux containers, R options, and environment variables, including those set by job schedulers on high-performance compute clusters. If none is set, it will fall back to parallel::detectCores(). Another example is makeClusterPSOCK(), which is backward compatible with parallel::makePSOCKcluster() while doing a better job in setting up remote cluster workers without the need for configuring the firewall to do port-forwarding to your local computer.
Author: Henrik Bengtsson [aut, cre, cph]
,
Mike Cheng [ctb]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between parallelly versions 1.39.0 dated 2024-11-07 and 1.40.0 dated 2024-12-02
parallelly-1.39.0/parallelly/README.md |only parallelly-1.40.0/parallelly/DESCRIPTION | 12 parallelly-1.40.0/parallelly/MD5 | 72 ++ parallelly-1.40.0/parallelly/NAMESPACE | 3 parallelly-1.40.0/parallelly/NEWS.md | 27 parallelly-1.40.0/parallelly/R/availableCores.R | 55 -- parallelly-1.40.0/parallelly/R/availableWorkers.R | 4 parallelly-1.40.0/parallelly/R/cgroups.R | 490 +++++++++++++++--- parallelly-1.40.0/parallelly/R/makeClusterPSOCK.R | 77 ++ parallelly-1.40.0/parallelly/R/utils,cluster.R | 2 parallelly-1.40.0/parallelly/R/vignette_engine.R |only parallelly-1.40.0/parallelly/R/zzz.R | 3 parallelly-1.40.0/parallelly/build |only parallelly-1.40.0/parallelly/inst/doc |only parallelly-1.40.0/parallelly/inst/test-data |only parallelly-1.40.0/parallelly/man/makeClusterPSOCK.Rd | 38 - parallelly-1.40.0/parallelly/tests/cgroups.R | 21 parallelly-1.40.0/parallelly/tests/makeClusterPSOCK.R | 2 parallelly-1.40.0/parallelly/vignettes |only 19 files changed, 627 insertions(+), 179 deletions(-)
Title: Centered Isotonic Regression and Dose-Response Utilities
Description: Isotonic regression (IR) and its improvement: centered isotonic regression (CIR). CIR is recommended in particular with small samples. Also, interval estimates for both, and additional utilities such as plotting dose-response data. For dev version and change history, see GitHub assaforon/cir.
Author: Assaf P. Oron [cre, aut]
Maintainer: Assaf P. Oron <assaf.oron@gmail.com>
Diff between cir versions 2.3.1 dated 2023-04-27 and 2.5.0 dated 2024-12-02
cir-2.3.1/cir/R/iterative.r |only cir-2.3.1/cir/man/iterCIR.Rd |only cir-2.5.0/cir/DESCRIPTION | 10 cir-2.5.0/cir/MD5 | 65 ++--- cir-2.5.0/cir/NAMESPACE | 1 cir-2.5.0/cir/R/analIntervals.r | 55 +++- cir-2.5.0/cir/R/cir.R | 35 +- cir-2.5.0/cir/R/classes.r | 2 cir-2.5.0/cir/R/invCIR.r | 61 +++- cir-2.5.0/cir/R/methods.r | 4 cir-2.5.0/cir/R/morrisCI.r | 4 cir-2.5.0/cir/R/pava.r | 11 cir-2.5.0/cir/R/utilities.r | 8 cir-2.5.0/cir/build/vignette.rds |binary cir-2.5.0/cir/inst/doc/BenHamou03.R | 2 cir-2.5.0/cir/inst/doc/BenHamou03.html | 340 +++++++++++++-------------- cir-2.5.0/cir/inst/doc/BenHamou03.rmd | 30 +- cir-2.5.0/cir/inst/examples/classExamples.r | 10 cir-2.5.0/cir/inst/examples/invCiExamples.r | 4 cir-2.5.0/cir/inst/examples/shrinkExamples.r |only cir-2.5.0/cir/man/DRshrink.Rd | 92 ++++--- cir-2.5.0/cir/man/DRtrace.Rd | 140 +++++------ cir-2.5.0/cir/man/cir-package.Rd | 5 cir-2.5.0/cir/man/cirPAVA.Rd | 214 ++++++++-------- cir-2.5.0/cir/man/deltaInverse.Rd | 213 ++++++++-------- cir-2.5.0/cir/man/doseFind.Rd | 164 ++++++------- cir-2.5.0/cir/man/isotInterval.Rd | 176 ++++++------- cir-2.5.0/cir/man/morrisCI.Rd | 190 +++++++-------- cir-2.5.0/cir/man/oldPAVA.Rd | 111 ++++---- cir-2.5.0/cir/man/plot.DRtrace.Rd | 188 +++++++------- cir-2.5.0/cir/man/quickInverse.Rd | 210 ++++++++-------- cir-2.5.0/cir/man/quickIsotone.Rd | 218 ++++++++--------- cir-2.5.0/cir/man/slope.Rd | 90 +++---- cir-2.5.0/cir/man/wilsonCI.Rd | 160 ++++++------ cir-2.5.0/cir/vignettes/BenHamou03.rmd | 30 +- 35 files changed, 1456 insertions(+), 1387 deletions(-)
Title: Fast and Simple 'MongoDB' Client for R
Description: High-performance MongoDB client based on 'mongo-c-driver' and 'jsonlite'.
Includes support for aggregation, indexing, map-reduce, streaming, encryption,
enterprise authentication, and GridFS. The online user manual provides an overview
of the available methods in the package: <https://jeroen.github.io/mongolite/>.
Author: Jeroen Ooms [aut, cre] ,
MongoDB, Inc [cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between mongolite versions 2.8.1 dated 2024-10-04 and 2.8.2 dated 2024-12-02
DESCRIPTION | 10 +++++----- MD5 | 22 ++++++++++++---------- NAMESPACE | 2 ++ NEWS | 3 +++ R/mongo.R | 6 +++--- R/reader.R |only inst/WORDLIST | 4 ++-- man/gridfs.Rd | 2 +- man/mongo.Rd | 6 +++--- man/read_bson.Rd |only src/mongolite.h | 2 +- src/reader.c | 43 +++++++++++++++++++++++++++++++++++++++++++ src/utils.c | 2 +- 13 files changed, 76 insertions(+), 26 deletions(-)
Title: R Interface for Apache Sedona
Description: R interface for 'Apache Sedona' based on 'sparklyr'
(<https://sedona.apache.org>).
Author: Apache Sedona [aut, cre],
Jia Yu [ctb, cph],
Yitao Li [aut, cph] ,
The Apache Software Foundation [cph],
RStudio [cph]
Maintainer: Apache Sedona <private@sedona.apache.org>
Diff between apache.sedona versions 1.6.1 dated 2024-08-25 and 1.7.0 dated 2024-12-02
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/dependencies.R | 12 ++++++------ README.md | 2 +- man/figures/logo.png |binary 5 files changed, 14 insertions(+), 14 deletions(-)
Title: NNG (Nanomsg Next Gen) Lightweight Messaging Library
Description: R binding for NNG (Nanomsg Next Gen), a successor to ZeroMQ. NNG is
a socket library implementing 'Scalability Protocols', a reliable,
high-performance standard for common communications patterns including
publish/subscribe, request/reply and service discovery, over in-process,
IPC, TCP, WebSocket and secure TLS transports. As its own threaded
concurrency framework, provides a toolkit for asynchronous programming and
distributed computing, with intuitive 'aio' objects which resolve
automatically upon completion of asynchronous operations, and
synchronisation primitives allowing R to wait upon events signalled by
concurrent threads.
Author: Charlie Gao [aut, cre] ,
Hibiki AI Limited [cph],
R Consortium [fnd]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between nanonext versions 1.3.2 dated 2024-11-14 and 1.4.0 dated 2024-12-02
nanonext-1.3.2/nanonext/man/collect_pipe.Rd |only nanonext-1.4.0/nanonext/DESCRIPTION | 6 nanonext-1.4.0/nanonext/MD5 | 57 ++++----- nanonext-1.4.0/nanonext/NAMESPACE | 7 - nanonext-1.4.0/nanonext/NEWS.md | 16 ++ nanonext-1.4.0/nanonext/R/aio.R | 10 - nanonext-1.4.0/nanonext/R/nano.R | 4 nanonext-1.4.0/nanonext/R/sendrecv.R | 6 nanonext-1.4.0/nanonext/R/socket.R | 88 +++++++------- nanonext-1.4.0/nanonext/R/sync.R | 7 - nanonext-1.4.0/nanonext/R/utils.R | 20 +++ nanonext-1.4.0/nanonext/inst/doc/nanonext.html | 2 nanonext-1.4.0/nanonext/man/close.Rd | 9 - nanonext-1.4.0/nanonext/man/dot-dispatcher.Rd | 3 nanonext-1.4.0/nanonext/man/dot-interrupt.Rd |only nanonext-1.4.0/nanonext/man/dot-online.Rd | 4 nanonext-1.4.0/nanonext/man/is_aio.Rd | 2 nanonext-1.4.0/nanonext/man/monitor.Rd |only nanonext-1.4.0/nanonext/man/send.Rd | 5 nanonext-1.4.0/nanonext/man/send_aio.Rd | 7 - nanonext-1.4.0/nanonext/src/aio.c | 78 +++++------- nanonext-1.4.0/nanonext/src/comms.c | 59 +++------ nanonext-1.4.0/nanonext/src/core.c | 39 +++++- nanonext-1.4.0/nanonext/src/init.c | 14 +- nanonext-1.4.0/nanonext/src/nanonext.h | 23 ++- nanonext-1.4.0/nanonext/src/nng-190.tar.xz |binary nanonext-1.4.0/nanonext/src/proto.c | 73 ------------ nanonext-1.4.0/nanonext/src/sync.c | 128 +++++++++++++++++++-- nanonext-1.4.0/nanonext/src/thread.c | 152 ++++++++++++------------- nanonext-1.4.0/nanonext/src/utils.c | 13 +- nanonext-1.4.0/nanonext/tests/tests.R | 49 ++++---- 31 files changed, 492 insertions(+), 389 deletions(-)
Title: Tools for Customer Lifetime Value Estimation
Description: A set of state-of-the-art probabilistic modeling approaches to derive estimates of individual customer lifetime values (CLV).
Commonly, probabilistic approaches focus on modelling 3 processes, i.e. individuals' attrition, transaction, and spending process.
Latent customer attrition models, which are also known as "buy-'til-you-die models", model the attrition as well as the transaction process.
They are used to make inferences and predictions about transactional patterns of individual customers such as their future purchase behavior.
Moreover, these models have also been used to predict individuals’ long-term engagement in activities such as playing an online game or
posting to a social media platform. The spending process is usually modelled by a separate probabilistic model. Combining these results yields in
lifetime values estimates for individual customers.
This package includes fast and accurate implementations of various probabilistic models for non-contractual settings
(e.g., gr [...truncated...]
Author: Patrick Bachmann [cre, aut],
Niels Kuebler [aut],
Markus Meierer [aut],
Jeffrey Naef [aut],
E. Shin Oblander [aut],
Patrik Schilter [aut]
Maintainer: Patrick Bachmann <pbachma@ethz.ch>
Diff between CLVTools versions 0.11.1 dated 2024-10-13 and 0.11.2 dated 2024-12-02
DESCRIPTION | 8 +- MD5 | 54 ++++++++-------- NAMESPACE | 1 NEWS.md | 8 ++ R/all_generics.R | 8 +- R/class_clv_model_bgnbd.R | 6 - R/class_clv_model_bgnbd_staticcov.R | 6 - R/class_clv_model_gg.R | 12 +++ R/class_clv_model_ggomnbd_nocov.R | 6 - R/class_clv_model_ggomnbd_staticcov.R | 6 - R/class_clv_model_pnbd.R | 6 - R/class_clv_model_pnbd_dynamiccov.R | 8 +- R/class_clv_model_pnbd_staticcov.R | 6 - R/f_clvfitted_inputchecks.R | 2 R/f_generics_clvfittedspending.R | 17 +++++ R/f_generics_clvfittedtransactions.R | 7 -- R/f_generics_clvfittedtransactionsdyncov.R | 3 R/f_generics_clvfittedtransactionsstaticcov.R | 5 - R/f_interface_newcustomer.R | 83 ++++++++++++++++++++----- R/f_interface_predict_clvfittedspending.R | 50 +++++++++++++-- R/f_interface_predict_clvfittedtransactions.R | 51 ++++++--------- inst/doc/CLVTools.pdf |binary man/newcustomer.Rd | 39 +++++++++-- man/predict.clv.fitted.spending.Rd | 51 ++++++++++++++- man/predict.clv.fitted.transactions.Rd | 8 +- tests/testthat/test_inputchecks_newcustomer.R | 33 ++++++++- tests/testthat/test_runability_bootstrapping.R | 56 +++++++++++++++- tests/testthat/test_runability_newcustomer.R | 10 +++ 28 files changed, 409 insertions(+), 141 deletions(-)
Title: Tidy Dataframes and Expressions with Statistical Details
Description: Utilities for producing dataframes with rich details for the
most common types of statistical approaches and tests: parametric,
nonparametric, robust, and Bayesian t-test, one-way ANOVA, correlation
analyses, contingency table analyses, and meta-analyses. The functions
are pipe-friendly and provide a consistent syntax to work with tidy
data. These dataframes additionally contain expressions with
statistical details, and can be used in graphing packages. This
package also forms the statistical processing backend for
'ggstatsplot'. References: Patil (2021) <doi:10.21105/joss.03236>.
Author: Indrajeet Patil [cre, aut, cph]
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between statsExpressions versions 1.6.1 dated 2024-10-30 and 1.6.2 dated 2024-12-02
DESCRIPTION | 15 MD5 | 44 - NAMESPACE | 5 NEWS.md | 5 R/add-expression-col.R | 359 +++++------ R/centrality-description.R | 155 ++-- R/contingency-table.R | 307 ++++----- R/corr-test.R | 115 +-- R/long-to-wide-converter.R | 191 +++--- R/meta-analysis.R | 193 +++--- R/one-sample-test.R | 207 +++--- R/oneway-anova.R | 575 +++++++++--------- R/pairwise-comparisons.R | 617 +++++++++---------- R/reexports.R | 8 R/statsExpressions-package.R | 1 R/tidy-model-expressions.R | 233 +++---- R/two-sample-test.R | 273 ++++---- build/vignette.rds |binary man/reexports.Rd | 4 man/tidy_model_parameters.Rd | 26 tests/testthat/_snaps/tidy-model-expressions.md | 23 tests/testthat/helper.R | 6 tests/testthat/test-pairwise-comparisons.R | 747 +++++++++++------------- 23 files changed, 2067 insertions(+), 2042 deletions(-)
More information about statsExpressions at CRAN
Permanent link
Title: Principal Components Analysis using NIPALS or Weighted EMPCA,
with Gram-Schmidt Orthogonalization
Description: Principal Components Analysis of a matrix using Non-linear
Iterative Partial Least Squares or weighted Expectation Maximization
PCA with Gram-Schmidt orthogonalization of the scores and loadings.
Optimized for speed. See Andrecut (2009) <doi:10.1089/cmb.2008.0221>.
Author: Kevin Wright [aut, cre, cph]
Maintainer: Kevin Wright <kw.stat@gmail.com>
Diff between nipals versions 0.8 dated 2021-09-15 and 1.0 dated 2024-12-02
DESCRIPTION | 30 - LICENSE |only MD5 | 56 +-- NAMESPACE | 1 NEWS.md | 33 + R/nipals.R | 68 +++ build/vignette.rds |binary inst/doc/empca_notes.R | 78 ++-- inst/doc/empca_notes.Rmd | 19 - inst/doc/empca_notes.html | 477 +++++++++++++++++++------- inst/doc/nipals_algorithm.Rmd | 1 inst/doc/nipals_algorithm.html | 501 +++++++++++++++++++++------- inst/doc/nipals_comparisons.R | 294 ++++++++-------- inst/doc/nipals_comparisons.Rmd | 1 inst/doc/nipals_comparisons.html | 629 ++++++++++++++++++++++++----------- inst/doc/nipals_optimization.R | 235 ++++++------- inst/doc/nipals_optimization.Rmd | 6 inst/doc/nipals_optimization.html | 639 +++++++++++++++++++++++++----------- man/avg_angular_distance.Rd |only man/empca.Rd | 180 +++++----- man/nipals.Rd | 223 ++++++------ man/uscrime.Rd | 118 +++--- tests/testthat/setup-expectations.R | 24 - tests/testthat/test-empca.R | 24 - tests/testthat/test-nipals.R | 152 +++++--- tests/testthat/test-uscrime.R | 81 ++-- vignettes/empca_notes.Rmd | 19 - vignettes/nipals_algorithm.Rmd | 1 vignettes/nipals_comparisons.Rmd | 1 vignettes/nipals_optimization.Rmd | 6 30 files changed, 2471 insertions(+), 1426 deletions(-)
Title: Tools to Analyze Repertory Grid Data
Description: Analyze repertory grids, a qualitative-quantitative
data collection technique devised by George A. Kelly in the 1950s. Today, grids are used across
various domains ranging from clinical psychology to marketing. The package contains functions
to quantitatively analyze and visualize repertory grid data (e.g. 'Fransella', 'Bell', & 'Bannister',
2004, ISBN: 978-0-470-09080-0). The package is part of the The package is part of the
<https://openrepgrid.org/> project.
Author: Mark Heckmann [aut, cre, cph] ,
Alejandro Garcia Gutierrez [ctb],
Diego Vitali [ctb]
Maintainer: Mark Heckmann <heckmann.mark@gmail.com>
Diff between OpenRepGrid versions 0.1.15 dated 2024-07-20 and 0.1.16 dated 2024-12-02
DESCRIPTION | 10 +- MD5 | 19 ++-- NEWS.md | 6 + R/data-openrepgrid.r | 9 +- R/import.r | 176 +++++++++++++++++++++++--------------------- inst/extdata/boeker.xlsx |only inst/extdata/grid_01.txt |only inst/extdata/grid_02.txt |only man/data-bellmcgorry1992.Rd | 1 man/data-boeker.Rd | 4 + man/importTxt.Rd | 94 ++++++++++++----------- man/importTxtInternal.Rd | 58 +++++++------- 12 files changed, 202 insertions(+), 175 deletions(-)
Title: Fitting Deep Distributional Regression
Description: Allows for the specification of semi-structured deep distributional regression models which are fitted in a neural network as
proposed by Ruegamer et al. (2023) <doi:10.18637/jss.v105.i02>.
Predictors can be modeled using structured (penalized) linear effects, structured non-linear effects or using an unstructured deep network model.
Author: David Ruegamer [aut, cre],
Christopher Marquardt [ctb],
Laetitia Frost [ctb],
Florian Pfisterer [ctb],
Philipp Baumann [ctb],
Chris Kolb [ctb],
Lucas Kook [ctb]
Maintainer: David Ruegamer <david.ruegamer@gmail.com>
Diff between deepregression versions 1.0.0 dated 2023-01-17 and 2.2.0 dated 2024-12-02
deepregression-1.0.0/deepregression/R/aaa.R |only deepregression-1.0.0/deepregression/R/rstudio |only deepregression-1.0.0/deepregression/inst/python/distributions/__pycache__/__init__.cpython-36.pyc |only deepregression-1.0.0/deepregression/inst/python/distributions/__pycache__/convlasso.cpython-310.pyc |only deepregression-1.0.0/deepregression/inst/python/distributions/__pycache__/convlasso.cpython-36.pyc |only deepregression-1.0.0/deepregression/inst/python/distributions/__pycache__/lasso.cpython-310.pyc |only deepregression-1.0.0/deepregression/inst/python/distributions/__pycache__/lasso.cpython-36.pyc |only deepregression-1.0.0/deepregression/inst/python/generators/__pycache__/__init__.cpython-36.pyc |only deepregression-1.0.0/deepregression/inst/python/generators/__pycache__/keras_generators.cpython-36.pyc |only deepregression-1.0.0/deepregression/inst/python/layers/__pycache__/__init__.cpython-36.pyc |only 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|only deepregression-2.2.0/deepregression/DESCRIPTION | 21 deepregression-2.2.0/deepregression/MD5 | 242 ++- deepregression-2.2.0/deepregression/NAMESPACE | 40 deepregression-2.2.0/deepregression/R/cross-validation.R | 36 deepregression-2.2.0/deepregression/R/data_handler.R | 58 deepregression-2.2.0/deepregression/R/data_handler_torch.R |only deepregression-2.2.0/deepregression/R/deep-ensembles.R | 167 +- deepregression-2.2.0/deepregression/R/deepregression.R | 106 - deepregression-2.2.0/deepregression/R/deepregression_torch.R |only deepregression-2.2.0/deepregression/R/families.R | 148 +- deepregression-2.2.0/deepregression/R/families_torch.R |only deepregression-2.2.0/deepregression/R/formula_helpers.R | 8 deepregression-2.2.0/deepregression/R/generator.R | 61 deepregression-2.2.0/deepregression/R/helperfuns.R | 63 deepregression-2.2.0/deepregression/R/layers.R | 49 deepregression-2.2.0/deepregression/R/layers_torch.R |only deepregression-2.2.0/deepregression/R/methods.R | 340 +++- deepregression-2.2.0/deepregression/R/nodelayer.R |only deepregression-2.2.0/deepregression/R/orthogonalization.R | 124 + deepregression-2.2.0/deepregression/R/psplinelayer.R | 52 deepregression-2.2.0/deepregression/R/psplinelayer_torch.R |only deepregression-2.2.0/deepregression/R/special_processing.R | 716 ++++++---- deepregression-2.2.0/deepregression/R/subnetwork_init_torch.R |only deepregression-2.2.0/deepregression/R/torch_helpers.R |only deepregression-2.2.0/deepregression/R/zzz.R | 72 - deepregression-2.2.0/deepregression/build/partial.rdb |binary deepregression-2.2.0/deepregression/inst/python/activations |only deepregression-2.2.0/deepregression/inst/python/distributions/__init__.py | 1 deepregression-2.2.0/deepregression/inst/python/distributions/__pycache__/__init__.cpython-310.pyc |binary deepregression-2.2.0/deepregression/inst/python/distributions/__pycache__/__init__.cpython-39.pyc |only 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More information about deepregression at CRAN
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Title: Generalized Dissimilarity Modeling
Description: A toolkit with functions to fit, plot, summarize, and apply Generalized Dissimilarity Models. Mokany K, Ware C, Woolley SNC, Ferrier S, Fitzpatrick MC (2022) <doi:10.1111/geb.13459> Ferrier S, Manion G, Elith J, Richardson K (2007) <doi:10.1111/j.1472-4642.2007.00341.x>.
Author: Matt Fitzpatrick [aut, cre] ,
Karel Mokany [aut] ,
Glenn Manion [aut],
Diego Nieto-Lugilde [aut] ,
Simon Ferrier [aut] ,
Roozbeh Valavi [ctb],
Matthew Lisk [ctb],
Chris Ware [ctb],
Skip Woolley [ctb],
Tom Harwood [ctb]
Maintainer: Matt Fitzpatrick <mfitzpatrick@umces.edu>
Diff between gdm versions 1.6.0-3 dated 2024-11-01 and 1.6.0-4 dated 2024-12-02
gdm-1.6.0-3/gdm/inst/extdata/test_data/gdm_trans_vars.grd.aux.xml |only gdm-1.6.0-4/gdm/DESCRIPTION | 8 - gdm-1.6.0-4/gdm/MD5 | 21 +-- gdm-1.6.0-4/gdm/R/gdm.fit.R | 4 gdm-1.6.0-4/gdm/R/gdm.formatsitepair.R | 4 gdm-1.6.0-4/gdm/R/gdm.partition.deviance.R | 4 gdm-1.6.0-4/gdm/R/gdm.plot.R | 4 gdm-1.6.0-4/gdm/R/gdm.plot.uncertainty.R | 4 gdm-1.6.0-4/gdm/R/gdm.subsample.sitepair.R | 4 gdm-1.6.0-4/gdm/R/gdm.variable.importance.R | 4 gdm-1.6.0-4/gdm/README.md | 6 gdm-1.6.0-4/gdm/inst/tinytest/test_gdm.R | 62 +++++----- 12 files changed, 61 insertions(+), 64 deletions(-)
Title: Interact with Data Type Registries and Create Machine-Readable
Data
Description: You can load a schema from a DTR (data type registry) as an R
object. Use this schema to write your data in JSON-LD (JavaScript
Object Notation for Linked Data) format to make it machine readable.
Author: Olga Lezhnina [aut, cre] ,
Manuel Prinz [aut] ,
Markus Stocker [aut] ,
Open Research Knowledge Graph Project and Contributors [cph]
Maintainer: Olga Lezhnina <olga.lezhnina@tib.eu>
Diff between dtreg versions 1.0.0 dated 2024-09-16 and 1.1.0 dated 2024-12-02
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Title: Extending Base 'R' Lists
Description: Extends the functionality of base 'R' lists and
provides specialized data structures 'deque',
'set', 'dict', and 'dict.table', the latter to extend the 'data.table'
package.
Author: Roman Pahl [aut, cre]
Maintainer: Roman Pahl <roman.pahl@gmail.com>
Diff between container versions 1.0.4 dated 2022-12-11 and 1.0.5 dated 2024-12-02
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Title: Nonlinear Nonparametric Statistics
Description: Nonlinear nonparametric statistics using partial moments. Partial moments are the elements of variance and asymptotically approximate the area of f(x). These robust statistics provide the basis for nonlinear analysis while retaining linear equivalences. NNS offers: Numerical integration, Numerical differentiation, Clustering, Correlation, Dependence, Causal analysis, ANOVA, Regression, Classification, Seasonality, Autoregressive modeling, Normalization, Stochastic dominance and Advanced Monte Carlo sampling. All routines based on: Viole, F. and Nawrocki, D. (2013), Nonlinear Nonparametric Statistics: Using Partial Moments (ISBN: 1490523995).
Author: Fred Viole [aut, cre],
Roberto Spadim [ctb]
Maintainer: Fred Viole <ovvo.financial.systems@gmail.com>
Diff between NNS versions 10.9.3 dated 2024-10-14 and 10.9.4 dated 2024-12-02
DESCRIPTION | 8 - MD5 | 27 ++--- R/NNS_MC.R | 19 ++- R/NNS_meboot.R | 138 +++++++++++++++++----------- R/Normalization.R | 2 README.md | 4 inst/doc/NNSvignette_Sampling.R | 37 ++++--- inst/doc/NNSvignette_Sampling.Rmd | 47 ++++++--- inst/doc/NNSvignette_Sampling.html | 159 +++++++++++++++++---------------- man/NNS.MC.Rd | 5 - man/NNS.meboot.Rd | 33 +++++- man/NNS.norm.Rd | 2 vignettes/NNSvignette_Sampling.Rmd | 47 ++++++--- vignettes/images/NNSmc_1.png |binary vignettes/images/NNSmc_1_tgt_drift.png |only 15 files changed, 315 insertions(+), 213 deletions(-)
Title: Group-Based Multivariate Trajectory Modeling
Description: Estimation and analysis of group-based multivariate trajectory models (Nagin, 2018 <doi:10.1177/0962280216673085>; Magrini, 2022 <doi:10.1007/s10182-022-00437-9>). The package implements an Expectation-Maximization (EM) algorithm allowing unbalanced panel and missing values, and provides several functionalities for prediction and graphical representation.
Author: Alessandro Magrini [aut, cre]
Maintainer: Alessandro Magrini <alessandro.magrini@unifi.it>
Diff between gbmt versions 0.1.3 dated 2022-03-05 and 0.1.4 dated 2024-12-02
Changelog | 8 +- DESCRIPTION | 11 +- MD5 | 21 +++-- NAMESPACE | 2 R/gbmt.R | 190 ++++++++++++++++++++++++++++----------------------- data/achievement.rda |only inst |only man/achievement.Rd |only man/agrisus.Rd | 2 man/agrisus2.Rd | 2 man/gbmt-package.Rd | 14 +-- man/gbmt.Rd | 57 ++++++++------- man/plot.gbmt.Rd | 13 +-- 13 files changed, 182 insertions(+), 138 deletions(-)
Title: Adds Subtotals to Data Reports
Description: Adds subtotal rows / sections (a la the 'SAS' 'Proc Tabulate' All option) to a Group By output by running a series of Group By functions with partial sets of the same variables and combining the results with the original. Can be used to add comprehensive information to a data report or to quickly aggregate Group By outputs used to gain a greater understanding of data.
Author: Yoni Aboody [aut, cre, cph]
Maintainer: Yoni Aboody <yoniaboody@gmail.com>
Diff between ReportSubtotal versions 0.1 dated 2024-11-15 and 0.1.2 dated 2024-12-02
DESCRIPTION | 8 - MD5 | 18 +- NAMESPACE | 1 NEWS.md | 11 - R/ReportSubtotal-package.R | 47 +++--- R/subtotal_dupe_removal.R | 33 ++-- R/subtotal_row.R | 3 R/subtotal_section.R | 319 +++++++++++++++++++++--------------------- man/ReportSubtotal-package.Rd | 2 man/subtotal_dupe_removal.Rd | 4 10 files changed, 230 insertions(+), 216 deletions(-)
More information about ReportSubtotal at CRAN
Permanent link
Title: A Toolkit for Recursive Partytioning
Description: A toolkit with infrastructure for representing, summarizing, and
visualizing tree-structured regression and classification models. This
unified infrastructure can be used for reading/coercing tree models from
different sources ('rpart', 'RWeka', 'PMML') yielding objects that share
functionality for print()/plot()/predict() methods. Furthermore, new and improved
reimplementations of conditional inference trees (ctree()) and model-based
recursive partitioning (mob()) from the 'party' package are provided based
on the new infrastructure. A description of this package was published
by Hothorn and Zeileis (2015) <https://jmlr.org/papers/v16/hothorn15a.html>.
Author: Torsten Hothorn [aut, cre] ,
Heidi Seibold [ctb] ,
Achim Zeileis [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between partykit versions 1.2-22 dated 2024-08-17 and 1.2-23 dated 2024-12-02
partykit-1.2-22/partykit/tests/Rplots.pdf |only partykit-1.2-23/partykit/DESCRIPTION | 8 +- partykit-1.2-23/partykit/MD5 | 25 ++++---- partykit-1.2-23/partykit/R/extree.R | 2 partykit-1.2-23/partykit/R/party.R | 5 + partykit-1.2-23/partykit/build/partial.rdb |binary partykit-1.2-23/partykit/build/vignette.rds |binary partykit-1.2-23/partykit/inst/NEWS.Rd | 8 ++ partykit-1.2-23/partykit/inst/doc/constparty.pdf |binary partykit-1.2-23/partykit/inst/doc/ctree.pdf |binary partykit-1.2-23/partykit/inst/doc/mob.pdf |binary partykit-1.2-23/partykit/inst/doc/partykit.pdf |binary partykit-1.2-23/partykit/tests/bugfixes.R | 10 +++ partykit-1.2-23/partykit/tests/bugfixes.Rout.save | 62 ++++++++++++++++++++-- 14 files changed, 97 insertions(+), 23 deletions(-)
Title: Multimodal Automated Phenotyping
Description: Electronic health records (EHR) linked with biorepositories are
a powerful platform for translational studies. A major bottleneck exists
in the ability to phenotype patients accurately and efficiently.
Towards that end, we developed an automated high-throughput
phenotyping method integrating International
Classification of Diseases (ICD) codes and narrative data extracted
using natural language processing (NLP). Specifically, our proposed method,
called MAP (Map Automated Phenotyping algorithm), fits an ensemble of latent
mixture models on aggregated ICD and NLP counts along with healthcare
utilization. The MAP algorithm yields a predicted probability of phenotype
for each patient and a threshold for classifying subjects with phenotype
yes/no (See Katherine P. Liao, et al. (2019) <doi:10.1093/jamia/ocz066>.).
Author: Thomas Charlon [aut, cre] ,
Chuan Hong [aut],
Jiehuan Sun [aut],
Katherine Liao [aut],
Sheng Yu [aut],
Tianxi Cai [aut],
PARSE Health [aut] ,
CELEHS [aut]
Maintainer: Thomas Charlon <charlon@protonmail.com>
Diff between MAP versions 0.1.3 dated 2019-04-01 and 1.0.0 dated 2024-12-02
DESCRIPTION | 41 ++++- MD5 | 27 ++- NAMESPACE | 22 ++ R/MAP.R | 373 +++++++++++++++++++++++++++-------------------- R/MAP_project.R |only R/package.R |only README.md |only build |only data |only inst |only man/MAP.Rd | 33 +++- man/compound.Rd |only man/exposition.Rd |only man/phecode.cuis.list.Rd |only man/pipe.Rd |only tests |only vignettes |only 17 files changed, 316 insertions(+), 180 deletions(-)
Title: Flexible and General Mediation Analysis Using Riesz Representers
Description: Implements a modern, unified estimation strategy for common
mediation estimands (natural effects, organic effects, interventional effects,
and recanting twins) in combination with modified treatment policies as
described in Liu, Williams, Rudolph, and Díaz (2024)
<doi:10.48550/arXiv.2408.14620>. Estimation makes use of recent advancements
in Riesz-learning to estimate a set of required nuisance parameters with
deep learning. The result is the capability to estimate mediation effects with
binary, categorical, continuous, or multivariate exposures with
high-dimensional mediators and mediator-outcome confounders using machine
learning.
Author: Nicholas Williams [aut, cre, cph]
,
Richard Liu [ctb],
Ivan Diaz [aut, cph]
Maintainer: Nicholas Williams <ntwilliams.personal@gmail.com>
Diff between crumble versions 0.1.1 dated 2024-11-14 and 0.1.2 dated 2024-12-02
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 6 ++++++ R/crumble_data.R | 4 ++-- README.md | 3 +++ 5 files changed, 18 insertions(+), 9 deletions(-)
Title: Anything to 'POSIXct' or 'Date' Converter
Description: Convert input in any one of character, integer, numeric, factor,
or ordered type into 'POSIXct' (or 'Date') objects, using one of a number of
predefined formats, and relying on Boost facilities for date and time parsing.
Author: Dirk Eddelbuettel [aut, cre]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between anytime versions 0.3.9 dated 2020-08-27 and 0.3.10 dated 2024-12-02
anytime-0.3.10/anytime/ChangeLog | 157 +++++++++++++++ anytime-0.3.10/anytime/DESCRIPTION | 17 - anytime-0.3.10/anytime/MD5 | 35 +-- anytime-0.3.10/anytime/R/anytime.R | 12 - anytime-0.3.10/anytime/R/formats.R | 6 anytime-0.3.10/anytime/README.md | 27 ++ anytime-0.3.10/anytime/build/partial.rdb |binary anytime-0.3.10/anytime/build/vignette.rds |binary anytime-0.3.10/anytime/cleanup | 1 anytime-0.3.10/anytime/inst/NEWS.Rd | 18 + anytime-0.3.10/anytime/inst/doc/anytime-introduction.pdf |binary anytime-0.3.10/anytime/inst/tinytest/test_all_formats.R | 21 +- anytime-0.3.10/anytime/inst/tinytest/test_gh_issue_129.R |only anytime-0.3.10/anytime/inst/tinytest/test_simple.R | 38 +-- anytime-0.3.10/anytime/man/anytime.Rd | 12 + anytime-0.3.10/anytime/man/iso8601.Rd | 4 anytime-0.3.10/anytime/src/anytime.cpp | 35 ++- anytime-0.3.10/anytime/tests/tinytest.R | 9 anytime-0.3.9/anytime/src/Makevars |only anytime-0.3.9/anytime/src/Makevars.win |only 20 files changed, 306 insertions(+), 86 deletions(-)
Title: Process Stream Temperature, Intermittency, and Conductivity
(STIC) Sensor Data
Description: A collection of functions for processing raw data from Stream Temperature, Intermittency, and Conductivity (STIC) loggers. 'STICr' (pronounced "sticker") includes functions for tidying, calibrating, classifying, and doing quality checks on data from STIC sensors. Some package functionality is described in Wheeler/Zipper et al. (2023) <doi:10.31223/X5636K>.
Author: Sam Zipper [aut, cre, cph] ,
Christopher T. Wheeler [aut] ,
Stephen Cook [ctb] ,
Delaney Peterson [ctb] ,
Sarah Godsey [ctb]
Maintainer: Sam Zipper <samzipper@ku.edu>
Diff between STICr versions 1.0 dated 2024-09-30 and 1.1 dated 2024-12-02
DESCRIPTION | 6 - MD5 | 27 +++---- NEWS.md | 8 +- R/apply_calibration.R | 2 R/qaqc_stic_data.R | 71 ++++++++++--------- R/validate_stic_data.R | 109 ++++++++++++++++++----------- README.md | 48 +++++++++++- inst/doc/intro-to-STICr.R | 44 ++++++++++- inst/doc/intro-to-STICr.Rmd | 57 ++++++++++++--- inst/doc/intro-to-STICr.html | 122 ++++++++++++++++++++++++--------- man/apply_calibration.Rd | 2 man/figures/README-validate-data-1.png |only man/qaqc_stic_data.Rd | 26 ++----- man/validate_stic_data.Rd | 31 ++++++-- vignettes/intro-to-STICr.Rmd | 57 ++++++++++++--- 15 files changed, 433 insertions(+), 177 deletions(-)
Title: Generate Samples with a Variety of Probability Distributions
Description: Simplifies the process of generating samples from a variety of probability distributions, allowing users to quickly create data frames for demonstrations, troubleshooting, or teaching purposes. Data is available in multiple sizes—small, medium, and large. For more information, refer to the package documentation.
Author: Nicholas Vietto [aut, cre, cph]
Maintainer: Nicholas Vietto <nicholasvietto@gmail.com>
Diff between samplezoo versions 1.1.0 dated 2024-11-28 and 1.1.1 dated 2024-12-02
DESCRIPTION | 8 ++-- MD5 | 14 +++---- NEWS.md | 6 +++ README.md | 22 ++++++++---- inst/doc/Example.Rmd | 2 - inst/doc/Example.html | 84 +++++++++++++++++++++++------------------------ man/samplezoo-package.Rd | 2 - vignettes/Example.Rmd | 2 - 8 files changed, 77 insertions(+), 63 deletions(-)
Title: Rational Approximations of Fractional Stochastic Partial
Differential Equations
Description: Functions that compute rational approximations of fractional elliptic stochastic partial differential equations. The package also contains functions for common statistical usage of these approximations. The main references for rSPDE are Bolin, Simas and Xiong (2023) <doi:10.1080/10618600.2023.2231051> for the covariance-based method and Bolin and Kirchner (2020) <doi:10.1080/10618600.2019.1665537> for the operator-based rational approximation. These can be generated by the citation function in R.
Author: David Bolin [cre, aut],
Alexandre Simas [aut],
Finn Lindgren [ctb]
Maintainer: David Bolin <davidbolin@gmail.com>
Diff between rSPDE versions 2.3.3 dated 2023-11-05 and 2.4.0 dated 2024-12-02
rSPDE-2.3.3/rSPDE/R/rSPDE.R |only rSPDE-2.3.3/rSPDE/man/rSPDE.Rd |only rSPDE-2.4.0/rSPDE/DESCRIPTION | 18 rSPDE-2.4.0/rSPDE/MD5 | 163 rSPDE-2.4.0/rSPDE/NAMESPACE | 64 rSPDE-2.4.0/rSPDE/NEWS.md | 15 rSPDE-2.4.0/rSPDE/R/covariance.functions.R |only rSPDE-2.4.0/rSPDE/R/fractional.computations.R | 2521 ++++--- rSPDE-2.4.0/rSPDE/R/fractional.operators.R | 1057 ++- rSPDE-2.4.0/rSPDE/R/inla_rspde.R | 3215 +++++----- rSPDE-2.4.0/rSPDE/R/inla_rspde_1d.R |only rSPDE-2.4.0/rSPDE/R/inla_rspde_anisotropic.R |only rSPDE-2.4.0/rSPDE/R/inla_rspde_intrinsic.R |only rSPDE-2.4.0/rSPDE/R/inla_rspde_spacetime.R |only rSPDE-2.4.0/rSPDE/R/inlabru_rspde.R | 2699 +++++--- rSPDE-2.4.0/rSPDE/R/intrinsic.R | 645 +- rSPDE-2.4.0/rSPDE/R/markov.approx.R | 54 rSPDE-2.4.0/rSPDE/R/operator.operations.R | 36 rSPDE-2.4.0/rSPDE/R/print.summary.R |only rSPDE-2.4.0/rSPDE/R/rSPDE-package.R |only rSPDE-2.4.0/rSPDE/R/rspde_lme.R | 2339 ++++--- rSPDE-2.4.0/rSPDE/R/spacetime.R |only rSPDE-2.4.0/rSPDE/R/stationary1d.R |only rSPDE-2.4.0/rSPDE/R/sysdata.rda |binary rSPDE-2.4.0/rSPDE/R/util.R | 2528 ++++--- rSPDE-2.4.0/rSPDE/build/vignette.rds |binary rSPDE-2.4.0/rSPDE/inst/CITATION | 10 rSPDE-2.4.0/rSPDE/inst/doc/rSPDE_package.Rmd | 105 rSPDE-2.4.0/rSPDE/inst/doc/rSPDE_package.html | 27 rSPDE-2.4.0/rSPDE/man/augment.rspde_lme.Rd | 11 rSPDE-2.4.0/rSPDE/man/bru_get_mapper.inla_rspde.Rd | 95 rSPDE-2.4.0/rSPDE/man/bru_get_mapper.inla_rspde_anisotropic2d.Rd |only rSPDE-2.4.0/rSPDE/man/bru_get_mapper.inla_rspde_matern1d.Rd |only rSPDE-2.4.0/rSPDE/man/bru_get_mapper.inla_rspde_spacetime.Rd |only rSPDE-2.4.0/rSPDE/man/construct.spde.matern.loglike.Rd | 32 rSPDE-2.4.0/rSPDE/man/create_train_test_indices.Rd |only rSPDE-2.4.0/rSPDE/man/cross_validation.Rd | 10 rSPDE-2.4.0/rSPDE/man/folded.matern.covariance.1d.Rd | 7 rSPDE-2.4.0/rSPDE/man/folded.matern.covariance.2d.Rd | 2 rSPDE-2.4.0/rSPDE/man/graph_data_rspde.Rd | 16 rSPDE-2.4.0/rSPDE/man/group_predict.Rd |only rSPDE-2.4.0/rSPDE/man/intrinsic.matern.operators.Rd | 37 rSPDE-2.4.0/rSPDE/man/matern.covariance.Rd | 2 rSPDE-2.4.0/rSPDE/man/matern.operators.Rd | 20 rSPDE-2.4.0/rSPDE/man/matern.rational.Rd |only rSPDE-2.4.0/rSPDE/man/matern.rational.cov.Rd |only rSPDE-2.4.0/rSPDE/man/matern2d.operators.Rd |only rSPDE-2.4.0/rSPDE/man/precision.CBrSPDEobj.Rd | 26 rSPDE-2.4.0/rSPDE/man/precision.CBrSPDEobj2d.Rd |only rSPDE-2.4.0/rSPDE/man/precision.rSPDEobj1d.Rd |only rSPDE-2.4.0/rSPDE/man/precision.spacetimeobj.Rd |only rSPDE-2.4.0/rSPDE/man/predict.CBrSPDEobj.Rd | 2 rSPDE-2.4.0/rSPDE/man/predict.CBrSPDEobj2d.Rd |only rSPDE-2.4.0/rSPDE/man/predict.inla_rspde_matern1d.Rd |only rSPDE-2.4.0/rSPDE/man/predict.rSPDEobj.Rd | 2 rSPDE-2.4.0/rSPDE/man/predict.rspde_lme.Rd | 42 rSPDE-2.4.0/rSPDE/man/predict.spacetimeobj.Rd |only rSPDE-2.4.0/rSPDE/man/rSPDE-package.Rd |only rSPDE-2.4.0/rSPDE/man/rSPDE.Ast.Rd |only rSPDE-2.4.0/rSPDE/man/rSPDE.construct.matern.loglike.Rd | 35 rSPDE-2.4.0/rSPDE/man/rSPDE.fem1d.Rd | 6 rSPDE-2.4.0/rSPDE/man/rSPDE.fem2d.Rd | 8 rSPDE-2.4.0/rSPDE/man/rSPDE.loglike.Rd | 3 rSPDE-2.4.0/rSPDE/man/rSPDE.matern.loglike.Rd | 35 rSPDE-2.4.0/rSPDE/man/rspde.anistropic2d.Rd |only rSPDE-2.4.0/rSPDE/man/rspde.make.A.Rd | 22 rSPDE-2.4.0/rSPDE/man/rspde.make.index.Rd | 94 rSPDE-2.4.0/rSPDE/man/rspde.matern.Rd | 8 rSPDE-2.4.0/rSPDE/man/rspde.matern.intrinsic.Rd |only rSPDE-2.4.0/rSPDE/man/rspde.matern.precision.Rd | 4 rSPDE-2.4.0/rSPDE/man/rspde.matern.precision.integer.Rd | 4 rSPDE-2.4.0/rSPDE/man/rspde.matern1d.Rd |only rSPDE-2.4.0/rSPDE/man/rspde.mesh.project.Rd | 6 rSPDE-2.4.0/rSPDE/man/rspde.metric_graph.Rd | 4 rSPDE-2.4.0/rSPDE/man/rspde.result.Rd | 92 rSPDE-2.4.0/rSPDE/man/rspde.spacetime.Rd |only rSPDE-2.4.0/rSPDE/man/rspde_lme.Rd | 93 rSPDE-2.4.0/rSPDE/man/simulate.CBrSPDEobj.Rd | 32 rSPDE-2.4.0/rSPDE/man/simulate.CBrSPDEobj2d.Rd |only rSPDE-2.4.0/rSPDE/man/simulate.intrinsicCBrSPDEobj.Rd |only rSPDE-2.4.0/rSPDE/man/simulate.rSPDEobj.Rd | 2 rSPDE-2.4.0/rSPDE/man/simulate.rSPDEobj1d.Rd |only rSPDE-2.4.0/rSPDE/man/simulate.spacetimeobj.Rd |only rSPDE-2.4.0/rSPDE/man/spacetime.operators.Rd |only rSPDE-2.4.0/rSPDE/man/spde.make.A.Rd | 20 rSPDE-2.4.0/rSPDE/man/spde.matern.loglike.Rd | 32 rSPDE-2.4.0/rSPDE/man/spde.matern.operators.Rd | 2 rSPDE-2.4.0/rSPDE/man/summary.CBrSPDEobj.Rd | 6 rSPDE-2.4.0/rSPDE/man/summary.CBrSPDEobj2d.Rd |only rSPDE-2.4.0/rSPDE/man/summary.rSPDEobj.Rd | 2 rSPDE-2.4.0/rSPDE/man/summary.rSPDEobj1d.Rd |only rSPDE-2.4.0/rSPDE/man/summary.rspde_result.Rd | 92 rSPDE-2.4.0/rSPDE/man/summary.spacetimeobj.Rd |only rSPDE-2.4.0/rSPDE/man/transform_parameters_anisotropic.Rd |only rSPDE-2.4.0/rSPDE/man/transform_parameters_spacetime.Rd |only rSPDE-2.4.0/rSPDE/man/update.CBrSPDEobj.Rd | 36 rSPDE-2.4.0/rSPDE/man/update.CBrSPDEobj2d.Rd |only rSPDE-2.4.0/rSPDE/man/update.rSPDEobj.Rd | 36 rSPDE-2.4.0/rSPDE/man/update.rSPDEobj1d.Rd |only rSPDE-2.4.0/rSPDE/man/update.spacetimeobj.Rd |only rSPDE-2.4.0/rSPDE/man/variogram.intrinsic.spde.Rd | 37 rSPDE-2.4.0/rSPDE/tests/testthat/test.CBrSPDE.R | 6 rSPDE-2.4.0/rSPDE/tests/testthat/test.fractional.operators.R | 4 rSPDE-2.4.0/rSPDE/tests/testthat/test.rational.R |only rSPDE-2.4.0/rSPDE/vignettes/rSPDE_package.Rmd | 105 105 files changed, 9491 insertions(+), 7135 deletions(-)
Title: Fitting Periodic Coefficients Linear Regression Models
Description: Provides tools for fitting periodic coefficients regression models to data where periodicity plays a crucial role. It allows users to model and analyze relationships between variables that exhibit cyclical or seasonal patterns, offering functions for estimating parameters and testing the periodicity of coefficients in linear regression models. For simple periodic coefficient regression model see Regui et al. (2024) <doi:10.1080/03610918.2024.2314662>.
Author: Slimane Regui [aut, cre] ,
Abdelhadi Akharif [aut],
Amal Mellouk [aut]
Maintainer: Slimane Regui <slimaneregui111997@gmail.com>
Diff between PerRegMod versions 4.4.2 dated 2024-11-26 and 4.4.3 dated 2024-12-02
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/PerRegMod.R | 4 +++- tests/test.R | 7 ++++--- 4 files changed, 13 insertions(+), 10 deletions(-)
Title: Analysis and Visualisation of Benchmark Experiments
Description: Implements methods for post-hoc analysis and
visualisation of benchmark experiments, for 'mlr3' and beyond.
Author: Sonabend Raphael [aut] ,
Florian Pfisterer [aut] ,
Michel Lang [ctb] ,
Bernd Bischl [ctb] ,
Sebastian Fischer [cre, ctb]
Maintainer: Sebastian Fischer <sebf.fischer@gmail.com>
Diff between mlr3benchmark versions 0.1.6 dated 2023-05-30 and 0.1.7 dated 2024-12-02
DESCRIPTION | 8 ++-- MD5 | 20 +++++----- NEWS.md | 5 ++ R/BenchmarkAggr.R | 22 +++++------ R/autoplot.BenchmarkAggr.R | 11 +++-- R/plots_cd.R | 70 ++++++++++++++++++++++-------------- man/BenchmarkAggr.Rd | 13 ++++-- man/as.BenchmarkAggr.Rd | 6 +-- man/as_benchmark_aggr.Rd | 6 +-- man/autoplot.BenchmarkAggr.Rd | 3 + tests/testthat/test_BenchmarkAggr.R | 10 ++--- 11 files changed, 100 insertions(+), 74 deletions(-)
Title: Fast Alternatives to 'tidyverse' Functions
Description: A full set of fast data manipulation tools with a tidy
front-end and a fast back-end using 'collapse' and 'cheapr'.
Author: Nick Christofides [aut, cre]
Maintainer: Nick Christofides <nick.christofides.r@gmail.com>
Diff between fastplyr versions 0.4.0 dated 2024-11-15 and 0.5.0 dated 2024-12-02
DESCRIPTION | 8 - MD5 | 86 ++++++------ NAMESPACE | 4 NEWS.md | 28 ++++ R/GRP_utils.R | 2 R/abc.R | 63 ++++----- R/add_id.R | 29 ---- R/cpp11.R | 4 R/df_utils.R | 77 +++++------ R/f_arrange.R | 9 - R/f_bind.R | 20 +- R/f_count.R | 40 +---- R/f_distinct.R | 21 --- R/f_duplicates.R | 12 - R/f_expand.R | 75 ++++++----- R/f_fill.R | 4 R/f_group_by.R | 10 - R/f_nest_by.R | 134 +++++++++---------- R/f_select.R | 16 ++ R/f_slice.R | 37 ----- R/f_summarise.R | 97 ++++++++------ R/f_tibble.R | 212 ++++++++++++++++--------------- R/fastplyr.R | 55 ++++---- R/group_collapse.R | 18 +- R/list_tidy.R |only R/remove_na.R |only R/tidy_quantiles.R | 6 R/tidy_utils.R | 259 +++++++++++++++++++++++++++++--------- man/add_id.Rd | 7 - man/duplicate_rows.Rd | 3 man/f_arrange.Rd | 78 ++++++----- man/f_count.Rd | 4 man/f_distinct.Rd | 8 - man/f_expand.Rd | 20 -- man/f_group_by.Rd | 3 man/f_select.Rd | 5 man/f_slice.Rd | 6 man/list_tidy.Rd |only man/new_tbl.Rd | 99 +++++++------- man/remove_na.Rd |only src/cpp11.cpp | 8 - src/fastplyr.cpp | 72 ---------- tests/testthat/test-f_arrange.R | 54 +++---- tests/testthat/test-f_bind.R |only tests/testthat/test-f_slice.R | 63 ++------- tests/testthat/test-f_summarise.R | 51 +++++++ tests/testthat/test-list_tidy.R |only 47 files changed, 926 insertions(+), 881 deletions(-)
Title: A Toolbox for Clinical Significance Analyses in Intervention
Studies
Description: A clinical significance analysis can be used to determine if an
intervention has a meaningful or practical effect for patients. You provide
a tidy data set plus a few more metrics and this package will take care of
it to make your results publication ready. Accompanying package to
Claus et al. <doi:10.18637/jss.v111.i01>.
Author: Benedikt Claus [aut, cre]
Maintainer: Benedikt Claus <b.claus@pedscience.de>
Diff between clinicalsignificance versions 2.0.0 dated 2023-11-16 and 2.1.0 dated 2024-12-02
DESCRIPTION | 11 MD5 | 25 - NEWS.md | 3 build/vignette.rds |binary inst/CITATION |only inst/doc/anchor-based-approach.html | 30 - inst/doc/combined-approach.html | 16 inst/doc/distribution-based-approach.html | 18 inst/doc/percentage-change-approach.html | 14 inst/doc/statistical-approach.html | 12 tests/testthat/_snaps/cs_combined.md | 362 +++++++++---------- tests/testthat/_snaps/cs_distribution.md | 314 ++++++++-------- tests/testthat/_snaps/cs_percentage.md | 80 ++-- tests/testthat/_snaps/plot/distribution-hlm-plot.svg | 2 14 files changed, 448 insertions(+), 439 deletions(-)
More information about clinicalsignificance at CRAN
Permanent link
Title: Generate Visual Predictive Checks (VPC) Using 'shiny'
Description: Utilize the 'shiny' interface to parameterize a Visual Predictive Check (VPC),
including selecting from different binning or binless methods and performing stratification,
censoring, and prediction correction. Generate the underlying 'tidyvpc' and 'ggplot2' code
directly from the user interface and download R or Rmd scripts to reproduce the VPCs in R.
Author: James Craig [aut, cre],
Mike Talley [aut],
Certara USA, Inc [cph, fnd]
Maintainer: James Craig <james.craig@certara.com>
Diff between Certara.VPCResults versions 3.0.1 dated 2024-10-10 and 3.0.2 dated 2024-12-02
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/create_rmd.R | 6 +++++- 3 files changed, 10 insertions(+), 6 deletions(-)
More information about Certara.VPCResults at CRAN
Permanent link
Title: Generalized Ridge Trace Plots for Ridge Regression
Description: The genridge package introduces generalizations of the standard univariate
ridge trace plot used in ridge regression and related methods. These graphical methods
show both bias (actually, shrinkage) and precision, by plotting the covariance ellipsoids of the estimated
coefficients, rather than just the estimates themselves. 2D and 3D plotting methods are provided,
both in the space of the predictor variables and in the transformed space of the PCA/SVD of the
predictors.
Author: Michael Friendly [aut, cre]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between genridge versions 0.7.1 dated 2024-11-13 and 0.8.0 dated 2024-12-02
DESCRIPTION | 10 - MD5 | 36 +++--- NAMESPACE | 3 NEWS.md | 14 ++ R/data.R | 51 +++++++++ R/plot.precision.R | 2 R/plot.ridge.R | 9 + R/precision.R | 56 ++++++++-- R/ridge.R | 45 ++++++++ R/traceplot.R | 4 R/vif.ridge.R | 162 +++++++++++++++++++++++-------- data/diab.RData |only man/diab.Rd |only man/figures/README-plot-vif-1.png |only man/figures/README-precision-plot2-1.png |only man/plot.precision.Rd | 2 man/plot.ridge.Rd | 9 + man/precision.Rd | 29 ++++- man/ridge.Rd | 23 ++++ man/traceplot.Rd | 2 man/vif.ridge.Rd | 111 ++++++++++++++------- 21 files changed, 449 insertions(+), 119 deletions(-)
Title: Multidimensional Penalized Splines for (Excess) Hazard Models,
Relative Mortality Ratio Models and Marginal Intensity Models
Description: Fits (excess) hazard, relative mortality ratio or marginal intensity models with multidimensional penalized splines allowing for
time-dependent effects, non-linear effects and interactions between several continuous covariates. In survival and net survival analysis, in addition to modelling the effect of time (via the baseline hazard), one has often to deal with several continuous covariates and model their functional forms, their time-dependent effects, and their interactions. Model specification becomes therefore a complex problem and penalized regression splines represent an appealing solution to that problem as splines offer the required flexibility while penalization limits overfitting issues. Current implementations of penalized survival models can be slow or unstable and sometimes lack some key features like taking into account expected mortality to provide net survival and excess hazard estimates. In contrast, survPen provides an automated, fast, and stable implementation (than [...truncated...]
Author: Mathieu Fauvernier [aut, cre],
Laurent Roche [aut],
Laurent Remontet [aut],
Zoe Uhry [ctb],
Nadine Bossard [ctb],
Elsa Coz [ctb]
Maintainer: Mathieu Fauvernier <mathieu.fauvernier@gmail.com>
Diff between survPen versions 1.6.0 dated 2023-09-13 and 2.0.0 dated 2024-12-02
survPen-1.6.0/survPen/R/survPenV1_60.r |only survPen-2.0.0/survPen/DESCRIPTION | 46 survPen-2.0.0/survPen/MD5 | 102 survPen-2.0.0/survPen/NAMESPACE | 7 survPen-2.0.0/survPen/NEWS | 19 survPen-2.0.0/survPen/R/RcppExports.R | 120 + survPen-2.0.0/survPen/R/survPenV2_00.r |only survPen-2.0.0/survPen/build/vignette.rds |binary survPen-2.0.0/survPen/data/HeartFailure.RData |only survPen-2.0.0/survPen/data/expected.table.RData |only survPen-2.0.0/survPen/data/list.wicss.rdata |only survPen-2.0.0/survPen/inst/doc/survival_analysis_with_survPen.R | 237 +- survPen-2.0.0/survPen/inst/doc/survival_analysis_with_survPen.Rmd | 202 + survPen-2.0.0/survPen/inst/doc/survival_analysis_with_survPen.html | 1135 +++------- survPen-2.0.0/survPen/man/CumulHazard.Rd |only survPen-2.0.0/survPen/man/DerivCumulHazard.Rd |only survPen-2.0.0/survPen/man/HazGL.Rd |only survPen-2.0.0/survPen/man/HeartFailure.Rd |only survPen-2.0.0/survPen/man/Hess_rho_mult.Rd |only survPen-2.0.0/survPen/man/NR.beta.Rd | 5 survPen-2.0.0/survPen/man/NR.rho.Rd | 2 survPen-2.0.0/survPen/man/constraint.Rd | 2 survPen-2.0.0/survPen/man/cor.var.Rd | 2 survPen-2.0.0/survPen/man/crs.FP.Rd | 2 survPen-2.0.0/survPen/man/crs.Rd | 2 survPen-2.0.0/survPen/man/datCancer.Rd | 2 survPen-2.0.0/survPen/man/design.matrix.Rd | 4 survPen-2.0.0/survPen/man/expected.table.Rd |only survPen-2.0.0/survPen/man/grad_rho_mult.Rd |only survPen-2.0.0/survPen/man/instr.Rd | 2 survPen-2.0.0/survPen/man/inv.repam.Rd | 2 survPen-2.0.0/survPen/man/list.wicss.Rd |only survPen-2.0.0/survPen/man/model.cons.Rd | 6 survPen-2.0.0/survPen/man/predSNS.Rd |only survPen-2.0.0/survPen/man/predict.survPen.Rd | 40 survPen-2.0.0/survPen/man/print.summary.survPen.Rd | 2 survPen-2.0.0/survPen/man/pwcst.Rd | 2 survPen-2.0.0/survPen/man/rd.Rd | 2 survPen-2.0.0/survPen/man/repam.Rd | 4 survPen-2.0.0/survPen/man/robust.var.Rd |only survPen-2.0.0/survPen/man/smf.Rd | 2 survPen-2.0.0/survPen/man/smooth.cons.Rd | 2 survPen-2.0.0/survPen/man/smooth.cons.integral.Rd | 2 survPen-2.0.0/survPen/man/smooth.spec.Rd | 2 survPen-2.0.0/survPen/man/splitmult.Rd |only survPen-2.0.0/survPen/man/summary.survPen.Rd | 3 survPen-2.0.0/survPen/man/survPen.Rd | 94 survPen-2.0.0/survPen/man/survPen.fit.Rd | 4 survPen-2.0.0/survPen/man/survPenObject.Rd | 5 survPen-2.0.0/survPen/man/tensor.in.Rd | 2 survPen-2.0.0/survPen/man/tensor.prod.S.Rd | 2 survPen-2.0.0/survPen/man/tensor.prod.X.Rd | 2 survPen-2.0.0/survPen/src/RcppExports.cpp | 129 + survPen-2.0.0/survPen/src/rcpp_survPen.cpp | 422 +++ survPen-2.0.0/survPen/tests/testthat/test_error.R | 2 survPen-2.0.0/survPen/tests/testthat/test_marginal_intensity.R |only survPen-2.0.0/survPen/tests/testthat/test_relative_mortality_ratio.R |only survPen-2.0.0/survPen/vignettes/survival_analysis_with_survPen.Rmd | 202 + survPen-2.0.0/survPen/vignettes/survival_analysis_with_survPen_files/figure-html/unnamed-chunk-10-1.png |binary survPen-2.0.0/survPen/vignettes/survival_analysis_with_survPen_files/figure-html/unnamed-chunk-51-1.png |binary survPen-2.0.0/survPen/vignettes/survival_analysis_with_survPen_files/figure-html/unnamed-chunk-52-1.png |only survPen-2.0.0/survPen/vignettes/survival_analysis_with_survPen_files/figure-html/unnamed-chunk-53-1.png |only 62 files changed, 1946 insertions(+), 878 deletions(-)
Title: Spatial Dependence: Weighting Schemes, Statistics
Description: A collection of functions to create spatial weights matrix
objects from polygon 'contiguities', from point patterns by distance and
tessellations, for summarizing these objects, and for permitting their
use in spatial data analysis, including regional aggregation by minimum
spanning tree; a collection of tests for spatial 'autocorrelation',
including global 'Morans I' and 'Gearys C' proposed by 'Cliff' and 'Ord'
(1973, ISBN: 0850860369) and (1981, ISBN: 0850860814), 'Hubert/Mantel'
general cross product statistic, Empirical Bayes estimates and
'Assunção/Reis' (1999) <doi:10.1002/(SICI)1097-0258(19990830)18:16%3C2147::AID-SIM179%3E3.0.CO;2-I> Index, 'Getis/Ord' G ('Getis' and 'Ord' 1992)
<doi:10.1111/j.1538-4632.1992.tb00261.x> and multicoloured
join count statistics, 'APLE' ('Li 'et al.' )
<doi:10.1111/j.1538-4632.2007.00708.x>, local 'Moran's I', 'Gearys C'
('Anselin' 1995) <doi:10.1111/j.1538-4632.1995.tb00338.x> and
'Getis/Ord' G ('Ord' and 'Getis' 1995)
< [...truncated...]
Author: Roger Bivand [cre, aut] ,
Micah Altman [ctb],
Luc Anselin [ctb],
Renato Assuncao [ctb],
Anil Bera [ctb],
Olaf Berke [ctb],
F. Guillaume Blanchet [ctb],
Marilia Carvalho [ctb],
Bjarke Christensen [ctb],
Yongwan Chun [ctb],
Carsten Dormann [ctb],
Steph [...truncated...]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between spdep versions 1.3-7 dated 2024-11-25 and 1.3-8 dated 2024-12-02
DESCRIPTION | 11 +++++++---- MD5 | 20 ++++++++++---------- NEWS.md | 5 ++++- inst/doc/CO69.html | 6 +++--- inst/doc/nb_sf.html | 28 ++++++++++++++-------------- inst/doc/sids.R | 5 +---- inst/doc/sids.Rmd | 8 ++------ inst/doc/sids.html | 32 +++++++++++++++++++++++++------- inst/doc/subgraphs.html | 6 +++--- man/moran.plot.Rd | 2 +- vignettes/sids.Rmd | 8 ++------ 11 files changed, 72 insertions(+), 59 deletions(-)
Title: Double Constrained Correspondence Analysis for Trait-Environment
Analysis in Ecology
Description: Double constrained correspondence analysis (dc-CA) analyzes
(multi-)trait (multi-)environment ecological data by using the 'vegan'
package and native R code. Throughout the two step algorithm of ter Braak
et al. (2018) is used. This algorithm combines and extends community-
(sample-) and species-level analyses, i.e. the usual community weighted
means (CWM)-based regression analysis and the species-level analysis of
species-niche centroids (SNC)-based regression analysis. The two steps use
canonical correspondence analysis to regress the abundance data on to the
traits and (weighted) redundancy analysis to regress the CWM of the
orthonormalized traits on to the environmental predictors. The function
dc_CA() has an option to divide the abundance data of a site by the site
total, giving equal site weights. This division has the advantage that the
multivariate analysis corresponds with an unweighted (multi-trait)
community-level analysis, instead of being weighted. The first step of
the al [...truncated...]
Author: Cajo J.F ter Braak [aut] ,
Bart-Jan van Rossum [aut, cre]
Maintainer: Bart-Jan van Rossum <bart-jan.vanrossum@wur.nl>
Diff between douconca versions 1.2.1 dated 2024-09-25 and 1.2.2 dated 2024-12-02
douconca-1.2.1/douconca/inst/tinytest/anova_dcca |only douconca-1.2.1/douconca/inst/tinytest/predict_env_dcca |only douconca-1.2.1/douconca/inst/tinytest/predict_regEnv_dcca |only douconca-1.2.1/douconca/inst/tinytest/predict_regTraits_dcca |only douconca-1.2.1/douconca/inst/tinytest/predict_response_dcca |only douconca-1.2.1/douconca/inst/tinytest/predict_traits_dcca |only douconca-1.2.1/douconca/inst/tinytest/scores_dcca |only douconca-1.2.2/douconca/DESCRIPTION | 11 douconca-1.2.2/douconca/MD5 | 166 ++-- douconca-1.2.2/douconca/NAMESPACE | 2 douconca-1.2.2/douconca/NEWS.md | 10 douconca-1.2.2/douconca/R/anova.dcca.R | 24 douconca-1.2.2/douconca/R/anova.wrda.R | 44 - douconca-1.2.2/douconca/R/anova_sites.R | 68 - douconca-1.2.2/douconca/R/anova_species.R | 275 +++++-- douconca-1.2.2/douconca/R/coef.dcca.R |only douconca-1.2.2/douconca/R/dc_CA.R | 137 --- douconca-1.2.2/douconca/R/fCWM_SNC.R | 388 +++++----- douconca-1.2.2/douconca/R/f_dc_CA.R | 18 douconca-1.2.2/douconca/R/f_env_axes.R | 6 douconca-1.2.2/douconca/R/f_trait_axes.R | 4 douconca-1.2.2/douconca/R/fitted.dcca.R |only douconca-1.2.2/douconca/R/functions_using_cca_object_internals.R | 29 douconca-1.2.2/douconca/R/getPlotdata.R | 31 douconca-1.2.2/douconca/R/get_Z_X_XZ_formula.R | 14 douconca-1.2.2/douconca/R/plot.dcCA.R | 34 douconca-1.2.2/douconca/R/plot_dcCA_CWM_SNC.R | 22 douconca-1.2.2/douconca/R/plot_species_scores_bk.R | 2 douconca-1.2.2/douconca/R/predict.dcca.R | 122 ++- douconca-1.2.2/douconca/R/predict_functions.R | 292 +++++-- douconca-1.2.2/douconca/R/print.dcca.R | 2 douconca-1.2.2/douconca/R/print.wrda.R | 2 douconca-1.2.2/douconca/R/scores.dcca.R | 10 douconca-1.2.2/douconca/R/scores.wrda.R | 10 douconca-1.2.2/douconca/R/scores_dcca.R | 98 +- douconca-1.2.2/douconca/R/wrda.R | 2 douconca-1.2.2/douconca/README.md | 9 douconca-1.2.2/douconca/build/partial.rdb |binary douconca-1.2.2/douconca/build/vignette.rds |binary douconca-1.2.2/douconca/demo/00Index | 2 douconca-1.2.2/douconca/demo/dune_dcCA.R | 10 douconca-1.2.2/douconca/demo/dune_dcCA_coef.R |only douconca-1.2.2/douconca/demo/dune_dcCA_fitted.R |only douconca-1.2.2/douconca/demo/dune_dcCA_predict.R | 43 - douconca-1.2.2/douconca/demo/dune_test.R | 2 douconca-1.2.2/douconca/inst/doc/douconca.html | 106 +- douconca-1.2.2/douconca/inst/tinytest/anova_byaxis_wrda |only douconca-1.2.2/douconca/inst/tinytest/anova_dccaDivF |only douconca-1.2.2/douconca/inst/tinytest/anova_dccaDivT |only douconca-1.2.2/douconca/inst/tinytest/anova_wrda |only douconca-1.2.2/douconca/inst/tinytest/modDivF1a_an |only douconca-1.2.2/douconca/inst/tinytest/modDivFq11_an |only douconca-1.2.2/douconca/inst/tinytest/modDivT1a_an |only douconca-1.2.2/douconca/inst/tinytest/modDivTq11_an |only douconca-1.2.2/douconca/inst/tinytest/modq11_predDivFenv |only douconca-1.2.2/douconca/inst/tinytest/modq11_predDivFtraits |only douconca-1.2.2/douconca/inst/tinytest/modq11_predDivTenv |only douconca-1.2.2/douconca/inst/tinytest/modq11_predDivTtraits |only douconca-1.2.2/douconca/inst/tinytest/plotdat_dcca |binary douconca-1.2.2/douconca/inst/tinytest/predDivF1a_env |only douconca-1.2.2/douconca/inst/tinytest/predDivF1a_env1 |only douconca-1.2.2/douconca/inst/tinytest/predDivF1a_reg |only douconca-1.2.2/douconca/inst/tinytest/predDivF1a_reg1 |only douconca-1.2.2/douconca/inst/tinytest/predDivF1a_reg_traits |only douconca-1.2.2/douconca/inst/tinytest/predDivF1a_reg_traits1 |only douconca-1.2.2/douconca/inst/tinytest/predDivF1a_response |only douconca-1.2.2/douconca/inst/tinytest/predDivF1a_response1 |only douconca-1.2.2/douconca/inst/tinytest/predDivF1a_traits |only douconca-1.2.2/douconca/inst/tinytest/predDivF1a_traits1 |only douconca-1.2.2/douconca/inst/tinytest/predDivT1a_env |only douconca-1.2.2/douconca/inst/tinytest/predDivT1a_env1 |only douconca-1.2.2/douconca/inst/tinytest/predDivT1a_reg |only douconca-1.2.2/douconca/inst/tinytest/predDivT1a_reg1 |only douconca-1.2.2/douconca/inst/tinytest/predDivT1a_reg_traits |only douconca-1.2.2/douconca/inst/tinytest/predDivT1a_reg_traits1 |only douconca-1.2.2/douconca/inst/tinytest/predDivT1a_response |only douconca-1.2.2/douconca/inst/tinytest/predDivT1a_response1 |only douconca-1.2.2/douconca/inst/tinytest/predDivT1a_traits |only douconca-1.2.2/douconca/inst/tinytest/predDivT1a_traits1 |only douconca-1.2.2/douconca/inst/tinytest/scores_dccaA11DivF_abs |only douconca-1.2.2/douconca/inst/tinytest/scores_dccav_abs |only douconca-1.2.2/douconca/inst/tinytest/scores_mod_DivF1a_abs |only douconca-1.2.2/douconca/inst/tinytest/scores_mod_DivF_fact_abs |only douconca-1.2.2/douconca/inst/tinytest/scores_mod_DivFc_abs |only douconca-1.2.2/douconca/inst/tinytest/scores_mod_DivFq11_abs |only douconca-1.2.2/douconca/inst/tinytest/scores_mod_DivT1a_abs |only douconca-1.2.2/douconca/inst/tinytest/scores_mod_DivT_fact_abs |only douconca-1.2.2/douconca/inst/tinytest/scores_mod_DivTc_abs |only douconca-1.2.2/douconca/inst/tinytest/scores_mod_DivTq11_abs |only douconca-1.2.2/douconca/inst/tinytest/scores_wrda_abs |binary douconca-1.2.2/douconca/inst/tinytest/test_anova.dcca.R |only douconca-1.2.2/douconca/inst/tinytest/test_anova.dccav.R |only douconca-1.2.2/douconca/inst/tinytest/test_dcca.R | 329 +++++++- douconca-1.2.2/douconca/inst/tinytest/test_dccav.R |only douconca-1.2.2/douconca/inst/tinytest/test_fCWMSNC.R | 228 ++++- douconca-1.2.2/douconca/inst/tinytest/test_fCWMSNCv.R |only douconca-1.2.2/douconca/inst/tinytest/test_plot.dcca.R | 121 +-- douconca-1.2.2/douconca/inst/tinytest/test_predict.dcca.R | 374 +++++++-- douconca-1.2.2/douconca/inst/tinytest/test_predict.dccav.R |only douconca-1.2.2/douconca/inst/tinytest/test_wrda.R | 14 douconca-1.2.2/douconca/man/anova.dcca.Rd | 4 douconca-1.2.2/douconca/man/anova_sites.Rd | 2 douconca-1.2.2/douconca/man/anova_species.Rd | 2 douconca-1.2.2/douconca/man/coef.dcca.Rd |only douconca-1.2.2/douconca/man/dc_CA.Rd | 45 - douconca-1.2.2/douconca/man/fCWM_SNC.Rd | 7 douconca-1.2.2/douconca/man/fitted.dcca.Rd |only douconca-1.2.2/douconca/man/getPlotdata.Rd | 8 douconca-1.2.2/douconca/man/plot.dcca.Rd | 273 +++---- douconca-1.2.2/douconca/man/plot_dcCA_CWM_SNC.Rd | 18 douconca-1.2.2/douconca/man/predict.dcca.Rd | 109 +- douconca-1.2.2/douconca/man/print.dcca.Rd | 10 douconca-1.2.2/douconca/man/scores.dcca.Rd | 15 douconca-1.2.2/douconca/man/scores.wrda.Rd | 5 114 files changed, 2280 insertions(+), 1279 deletions(-)
Title: R Wrapper for 'pikchr' (PIC) Diagram Language
Description: An 'R' interface to 'pikchr' (<https://pikchr.org>, pronounced “picture”), a 'PIC'-like markup language for creating diagrams within technical documentation. Originally developed by Brian Kernighan, 'PIC' has been adapted into 'pikchr' by D. Richard Hipp, the creator of 'SQLite'. 'pikchr' is designed to be embedded in fenced code blocks of Markdown or other documentation markup languages, making it ideal for generating diagrams in text-based formats. This package allows R users to seamlessly integrate the descriptive syntax of 'pikchr' for diagram creation directly within the 'R' environment.
Author: Andre Leite [aut, cre],
Hugo Vaconcelos [aut],
Richard Hipp [ctb],
Brian Kernighan [ctb]
Maintainer: Andre Leite <leite@castlab.org>
Diff between pikchr versions 0.97 dated 2024-09-30 and 1.0 dated 2024-12-02
DESCRIPTION | 14 MD5 | 38 NAMESPACE | 1 NEWS.md |only R/engine.R | 87 +- R/pikchrWrappers.R | 48 + R/zzz.R | 1 README.md |only build/vignette.rds |binary data |only inst/doc/Examples.R | 4 inst/doc/Examples.Rmd | 226 ++++- inst/doc/Examples.html | 2007 ++++++++++++++++++++++++++++--------------------- inst/doc/userman.R |only inst/doc/userman.Rmd |only inst/doc/userman.html |only man/eng_pikchr.Rd | 3 man/figures |only man/google_fonts.Rd |only man/pikchr.Rd | 8 vignettes/Examples.Rmd | 226 ++++- vignettes/userman.Rmd |only 22 files changed, 1721 insertions(+), 942 deletions(-)
Title: A Simple Interface for Interacting with 'WebDAV' Servers
Description: An easy-to-use interface for interacting with 'WebDAV' servers,
including 'OwnCloud'. It simplifies the use of 'WebDAV' methods such as COPY, MKCOL, MOVE, and others.
With built-in authentication and request handling, it allows for easy
management of files and directories over the 'WebDAV' protocol.
Author: Andre Leite [aut, cre],
Hugo Vaconcelos [aut],
Diogo Bezerra [aut]
Maintainer: Andre Leite <leite@castlab.org>
Diff between webdav versions 0.1.1 dated 2024-10-08 and 0.1.2 dated 2024-12-02
DESCRIPTION | 11 - MD5 | 19 ++- NEWS.md |only README.md | 270 +++----------------------------------------- build/vignette.rds |binary inst/doc/env_variables.Rmd | 8 - inst/doc/env_variables.html | 26 ++-- inst/doc/webdav.R |only inst/doc/webdav.Rmd |only inst/doc/webdav.html |only man/figures |only vignettes/env_variables.Rmd | 8 - vignettes/webdav.Rmd |only 13 files changed, 62 insertions(+), 280 deletions(-)
Title: Spatial Regression Analysis
Description: A collection of all the estimation functions for spatial cross-sectional models (on lattice/areal data using spatial weights matrices) contained up to now in 'spdep'. These model fitting functions include maximum likelihood methods for cross-sectional models proposed by 'Cliff' and 'Ord' (1973, ISBN:0850860369) and (1981, ISBN:0850860814), fitting methods initially described by 'Ord' (1975) <doi:10.1080/01621459.1975.10480272>. The models are further described by 'Anselin' (1988) <doi:10.1007/978-94-015-7799-1>. Spatial two stage least squares and spatial general method of moment models initially proposed by 'Kelejian' and 'Prucha' (1998) <doi:10.1023/A:1007707430416> and (1999) <doi:10.1111/1468-2354.00027> are provided. Impact methods and MCMC fitting methods proposed by 'LeSage' and 'Pace' (2009) <doi:10.1201/9781420064254> are implemented for the family of cross-sectional spatial regression models. Methods for fitting the log determinant term in maximu [...truncated...]
Author: Roger Bivand [cre, aut] ,
Gianfranco Piras [aut],
Luc Anselin [ctb],
Andrew Bernat [ctb],
Eric Blankmeyer [ctb],
Yongwan Chun [ctb],
Virgilio Gomez-Rubio [ctb],
Daniel Griffith [ctb],
Martin Gubri [ctb],
Rein Halbersma [ctb],
James LeSage [ctb],
Ange [...truncated...]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between spatialreg versions 1.3-5 dated 2024-08-19 and 1.3-6 dated 2024-12-02
DESCRIPTION | 12 MD5 | 26 - NAMESPACE | 2 NEWS.md | 8 R/kpgm_new.R | 10 R/s2sls.R | 766 ++++++++++++++++++++------------------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/SpatialFiltering.html | 57 +- inst/doc/nb_igraph.html | 7 inst/doc/sids_models.html | 5 inst/tinytest/test_TR_20_07_20.R | 3 man/gstsls.Rd | 3 man/stsls.Rd | 17 14 files changed, 481 insertions(+), 435 deletions(-)
Title: REDCap Metadata Casting and Castellated Data Handling
Description: Casting metadata for REDCap database creation and handling of
castellated data using repeated instruments and longitudinal projects in
'REDCap'. Keeps a focused data export approach, by allowing to only export
required data from the database. Also for casting new REDCap databases based
on datasets from other sources.
Originally forked from the R part of 'REDCapRITS' by Paul Egeler.
See <https://github.com/pegeler/REDCapRITS>.
'REDCap' (Research Electronic Data Capture) is a secure, web-based software
platform designed to support data capture for research studies, providing
1) an intuitive interface for validated data capture; 2) audit trails for
tracking data manipulation and export procedures; 3) automated export
procedures for seamless data downloads to common statistical packages; and
4) procedures for data integration and interoperability with external
sources (Harris et al (2009) <doi:10.1016/j.jbi.2008.08.010>;
Harris et al (2019) <doi:10.1016/j.jbi.2019.103208> [...truncated...]
Author: Andreas Gammelgaard Damsbo [aut, cre]
,
Paul Egeler [aut]
Maintainer: Andreas Gammelgaard Damsbo <agdamsbo@clin.au.dk>
Diff between REDCapCAST versions 24.11.2 dated 2024-11-22 and 24.12.1 dated 2024-12-02
REDCapCAST-24.11.2/REDCapCAST/R/ds2dd.R |only REDCapCAST-24.11.2/REDCapCAST/inst/shiny-examples/casting/server.R |only REDCapCAST-24.11.2/REDCapCAST/inst/shiny-examples/casting/ui.R |only REDCapCAST-24.12.1/REDCapCAST/DESCRIPTION | 14 REDCapCAST-24.12.1/REDCapCAST/MD5 | 104 REDCapCAST-24.12.1/REDCapCAST/NAMESPACE | 11 REDCapCAST-24.12.1/REDCapCAST/NEWS.md | 17 REDCapCAST-24.12.1/REDCapCAST/R/REDCap_split.r | 11 REDCapCAST-24.12.1/REDCapCAST/R/as_factor.R | 136 - REDCapCAST-24.12.1/REDCapCAST/R/ds2dd_detailed.R | 110 - REDCapCAST-24.12.1/REDCapCAST/R/easy_redcap.R | 28 REDCapCAST-24.12.1/REDCapCAST/R/export_redcap_instrument.R | 22 REDCapCAST-24.12.1/REDCapCAST/R/fct_drop.R |only REDCapCAST-24.12.1/REDCapCAST/R/read_redcap_tables.R | 141 + REDCapCAST-24.12.1/REDCapCAST/R/redcap_wider.R | 112 - REDCapCAST-24.12.1/REDCapCAST/R/redcapcast_meta.R | 2 REDCapCAST-24.12.1/REDCapCAST/R/sysdata.rda |binary REDCapCAST-24.12.1/REDCapCAST/R/utils.r | 34 REDCapCAST-24.12.1/REDCapCAST/build/vignette.rds |binary REDCapCAST-24.12.1/REDCapCAST/inst/WORDLIST | 8 REDCapCAST-24.12.1/REDCapCAST/inst/doc/Database-creation.R | 14 REDCapCAST-24.12.1/REDCapCAST/inst/doc/Database-creation.Rmd | 2 REDCapCAST-24.12.1/REDCapCAST/inst/doc/Database-creation.html | 641 ------ REDCapCAST-24.12.1/REDCapCAST/inst/doc/REDCapCAST.R | 39 REDCapCAST-24.12.1/REDCapCAST/inst/doc/REDCapCAST.Rmd | 78 REDCapCAST-24.12.1/REDCapCAST/inst/doc/REDCapCAST.html | 1043 +++++++--- REDCapCAST-24.12.1/REDCapCAST/inst/doc/Shiny-app.R |only REDCapCAST-24.12.1/REDCapCAST/inst/doc/Shiny-app.Rmd |only REDCapCAST-24.12.1/REDCapCAST/inst/doc/Shiny-app.html |only REDCapCAST-24.12.1/REDCapCAST/inst/shiny-examples/casting/app.R |only REDCapCAST-24.12.1/REDCapCAST/inst/shiny-examples/casting/rsconnect |only REDCapCAST-24.12.1/REDCapCAST/man/REDCapCAST-package.Rd | 2 REDCapCAST-24.12.1/REDCapCAST/man/REDCap_split.Rd | 11 REDCapCAST-24.12.1/REDCapCAST/man/all_na.Rd | 2 REDCapCAST-24.12.1/REDCapCAST/man/apply_factor_labels.Rd |only REDCapCAST-24.12.1/REDCapCAST/man/apply_field_label.Rd |only REDCapCAST-24.12.1/REDCapCAST/man/as_factor.Rd | 10 REDCapCAST-24.12.1/REDCapCAST/man/clean_field_label.Rd |only REDCapCAST-24.12.1/REDCapCAST/man/create_instrument_meta.Rd | 8 REDCapCAST-24.12.1/REDCapCAST/man/ds2dd.Rd | 6 REDCapCAST-24.12.1/REDCapCAST/man/ds2dd_detailed.Rd | 5 REDCapCAST-24.12.1/REDCapCAST/man/easy_redcap.Rd | 9 REDCapCAST-24.12.1/REDCapCAST/man/export_redcap_instrument.Rd | 4 REDCapCAST-24.12.1/REDCapCAST/man/fct2num.Rd | 16 REDCapCAST-24.12.1/REDCapCAST/man/fct_drop.Rd |only REDCapCAST-24.12.1/REDCapCAST/man/format_redcap_factor.Rd |only REDCapCAST-24.12.1/REDCapCAST/man/get_api_key.Rd | 8 REDCapCAST-24.12.1/REDCapCAST/man/is.labelled.Rd |only REDCapCAST-24.12.1/REDCapCAST/man/named_levels.Rd | 18 REDCapCAST-24.12.1/REDCapCAST/man/possibly_numeric.Rd |only REDCapCAST-24.12.1/REDCapCAST/man/possibly_roman.Rd | 8 REDCapCAST-24.12.1/REDCapCAST/man/read_redcap_tables.Rd | 25 REDCapCAST-24.12.1/REDCapCAST/man/redcap_wider.Rd | 20 REDCapCAST-24.12.1/REDCapCAST/man/redcapcast_meta.Rd | 2 REDCapCAST-24.12.1/REDCapCAST/man/sanitize_split.Rd | 9 REDCapCAST-24.12.1/REDCapCAST/man/suffix2label.Rd |only REDCapCAST-24.12.1/REDCapCAST/tests/testthat/test-as_factor.R |only REDCapCAST-24.12.1/REDCapCAST/tests/testthat/test-ds2dd.R | 31 REDCapCAST-24.12.1/REDCapCAST/tests/testthat/test-redcap_wider.R | 16 REDCapCAST-24.12.1/REDCapCAST/vignettes/Database-creation.Rmd | 2 REDCapCAST-24.12.1/REDCapCAST/vignettes/REDCapCAST.Rmd | 78 REDCapCAST-24.12.1/REDCapCAST/vignettes/Shiny-app.Rmd |only 62 files changed, 1711 insertions(+), 1146 deletions(-)
Title: Client for 'LaminDB'
Description: Interact with 'LaminDB'. 'LaminDB' is an open-source data
framework for biology. This package allows you to query and download
data from 'LaminDB' instances.
Author: Robrecht Cannoodt [aut, cre] ,
Luke Zappia [aut] ,
Data Intuitive [aut],
Lamin Labs [aut, cph]
Maintainer: Robrecht Cannoodt <robrecht@data-intuitive.com>
Diff between laminr versions 0.2.0 dated 2024-11-20 and 0.3.0 dated 2024-12-02
laminr-0.2.0/laminr/tests/testthat/helper-setup_lamindata_instance.R |only laminr-0.2.0/laminr/tests/testthat/test-connect_lamindata.R |only laminr-0.2.0/laminr/vignettes/example_workflow.Rmd |only laminr-0.3.0/laminr/DESCRIPTION | 15 laminr-0.3.0/laminr/MD5 | 52 +- laminr-0.3.0/laminr/R/Artifact.R | 52 +- laminr-0.3.0/laminr/R/Instance.R | 58 +- laminr-0.3.0/laminr/R/InstanceAPI.R | 64 -- laminr-0.3.0/laminr/R/connect.R | 5 laminr-0.3.0/laminr/R/save_active_file.R |only laminr-0.3.0/laminr/R/settings_store.R | 3 laminr-0.3.0/laminr/R/utils.R | 125 ++++ laminr-0.3.0/laminr/README.md | 71 +- laminr-0.3.0/laminr/inst/doc/architecture.R | 1 laminr-0.3.0/laminr/inst/doc/architecture.html | 1 laminr-0.3.0/laminr/inst/doc/architecture.qmd | 1 laminr-0.3.0/laminr/inst/doc/development.html | 20 laminr-0.3.0/laminr/inst/doc/development.qmd | 14 laminr-0.3.0/laminr/inst/rstudio |only laminr-0.3.0/laminr/man/laminr-package.Rd | 2 laminr-0.3.0/laminr/tests/testthat/helper-skip_if_not_logged_in.R |only laminr-0.3.0/laminr/tests/testthat/test-Artifact.R | 8 laminr-0.3.0/laminr/tests/testthat/test-Registry.R | 6 laminr-0.3.0/laminr/tests/testthat/test-RelatedRecords.R | 2 laminr-0.3.0/laminr/tests/testthat/test-connect.R |only laminr-0.3.0/laminr/tests/testthat/test-instance_api.R | 10 laminr-0.3.0/laminr/tests/testthat/test-utils.R | 15 laminr-0.3.0/laminr/vignettes/architecture.qmd | 1 laminr-0.3.0/laminr/vignettes/concepts_features.Rmd |only laminr-0.3.0/laminr/vignettes/development.qmd | 14 laminr-0.3.0/laminr/vignettes/laminr.Rmd | 260 ++++++---- 31 files changed, 530 insertions(+), 270 deletions(-)
Title: Harrell Miscellaneous
Description: Contains many functions useful for data
analysis, high-level graphics, utility operations, functions for
computing sample size and power, simulation, importing and annotating datasets,
imputing missing values, advanced table making, variable clustering,
character string manipulation, conversion of R objects to LaTeX and html code,
recoding variables, caching, simplified parallel computing, encrypting and decrypting data using a safe workflow, general moving window statistical estimation, and assistance in interpreting principal component analysis.
Author: Frank E Harrell Jr [aut, cre] ,
Charles Dupont [ctb]
Maintainer: Frank E Harrell Jr <fh@fharrell.com>
Diff between Hmisc versions 5.2-0 dated 2024-10-28 and 5.2-1 dated 2024-12-02
DESCRIPTION | 8 +-- MD5 | 18 ++++--- NAMESPACE | 2 NEWS | 6 ++ R/label.s | 8 +-- R/qrxcenter.r |only R/rcorr.s | 2 man/qrxcenter.Rd |only man/rcorr.Rd | 2 man/varclus.Rd | 5 ++ src/rcorr.f90 | 125 ++++++++++++++----------------------------------------- 11 files changed, 65 insertions(+), 111 deletions(-)
Title: Efficient Serialization of R Objects
Description: Streamlines and accelerates the process of saving and loading R objects, improving speed and compression compared to other methods. The package provides two compression formats: the 'qs2' format, which uses R serialization via the C API while optimizing compression and disk I/O, and the 'qdata' format, featuring custom serialization for slightly faster performance and better compression. Additionally, the 'qs2' format can be directly converted to the standard 'RDS' format, ensuring long-term compatibility with future versions of R.
Author: Travers Ching [aut, cre, cph],
Yann Collet [ctb, cph] ,
Facebook, Inc. [cph] ,
Reichardt Tino [ctb, cph] ,
Skibinski Przemyslaw [ctb, cph] ,
Mori Yuta [ctb, cph] ,
Francesc Alted [ctb, cph]
Maintainer: Travers Ching <traversc@gmail.com>
Diff between qs2 versions 0.1.2 dated 2024-11-24 and 0.1.3 dated 2024-12-02
ChangeLog | 5 ++++- DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- src/qs_unwind_protect.h | 12 ++++++++++-- src/qx_file_headers.h | 1 + src/qx_functions.cpp | 29 ++++++++++++++--------------- 6 files changed, 38 insertions(+), 27 deletions(-)
Title: A Way to Perform Code Review or QA on Other Packages
Description: Reviews other packages during code review by looking at their
dependencies, code style, code complexity, and how internally defined
functions interact with one another.
Author: Maarten van Kessel [aut, cre]
Maintainer: Maarten van Kessel <m.l.vankessel@erasmusmc.nl>
Diff between PaRe versions 0.1.14 dated 2024-11-29 and 0.1.15 dated 2024-12-02
PaRe-0.1.14/PaRe/tests/testthat/helper-makeRepo.R |only PaRe-0.1.15/PaRe/DESCRIPTION | 8 - PaRe-0.1.15/PaRe/MD5 | 28 ++-- PaRe-0.1.15/PaRe/build/vignette.rds |binary PaRe-0.1.15/PaRe/inst/doc/Documentation.R | 84 +++++++------- PaRe-0.1.15/PaRe/inst/doc/Documentation.html | 26 ++-- PaRe-0.1.15/PaRe/tests/testthat/helper-checkSuggests.R | 3 PaRe-0.1.15/PaRe/tests/testthat/setup.R |only PaRe-0.1.15/PaRe/tests/testthat/test-addPareArticle.R | 6 - PaRe-0.1.15/PaRe/tests/testthat/test-checkDependencies.R | 17 +- PaRe-0.1.15/PaRe/tests/testthat/test-getApplyCall.R | 11 - PaRe-0.1.15/PaRe/tests/testthat/test-getDlplyCall.R | 11 - PaRe-0.1.15/PaRe/tests/testthat/test-getDoCall.R | 11 - PaRe-0.1.15/PaRe/tests/testthat/test-getDoCallFromLines.R | 3 PaRe-0.1.15/PaRe/tests/testthat/test-getFunCall.R | 8 - PaRe-0.1.15/PaRe/tests/testthat/test-getMultiLineFun.R | 8 - 16 files changed, 111 insertions(+), 113 deletions(-)
Title: Global Envelopes
Description: Implementation of global envelopes for a set of general d-dimensional vectors T
in various applications. A 100(1-alpha)% global envelope is a band bounded by two
vectors such that the probability that T falls outside this envelope in any of the d
points is equal to alpha. Global means that the probability is controlled simultaneously
for all the d elements of the vectors. The global envelopes can be used for graphical
Monte Carlo and permutation tests where the test statistic is a multivariate vector or
function (e.g. goodness-of-fit testing for point patterns and random sets, functional
analysis of variance, functional general linear model, n-sample test of correspondence
of distribution functions), for central regions of functional or multivariate data (e.g.
outlier detection, functional boxplot) and for global confidence and prediction bands
(e.g. confidence band in polynomial regression, Bayesian posterior prediction). See
Myllymäki and Mrkvička (2024) <doi:10.18637/jss.v111.i03 [...truncated...]
Author: Mari Myllymaeki [aut, cre],
Tomas Mrkvicka [aut],
Mikko Kuronen [ctb],
Jiri Dvorak [ctb],
Pavel Grabarnik [ctb],
Ute Hahn [ctb],
Michael Rost [ctb],
Henri Seijo [ctb]
Maintainer: Mari Myllymaeki <mari.myllymaki@luke.fi>
Diff between GET versions 1.0-3 dated 2024-08-19 and 1.0-4 dated 2024-12-02
DESCRIPTION | 12 +- MD5 | 58 +++++----- NEWS | 4 R/GET-package.r | 10 + R/adjusted_envelopes.r | 4 R/combined_envelope_tests.R | 4 R/deviation.r | 17 ++- R/deviation_test.r | 35 ++++-- R/envelopes.r | 17 +-- R/forder.r | 8 + R/glm.R | 4 R/graphfanova.r | 2 R/rq.R | 2 README.md | 7 - inst/CITATION | 169 +++++++++++-------------------- inst/doc/FDRenvelopes.pdf |binary inst/doc/GET.pdf |binary inst/doc/HotSpots.pdf |binary inst/doc/QuantileRegression.pdf |binary inst/doc/pointpatterns.pdf |binary man/GET-package.Rd | 10 + man/GET.composite.Rd | 4 man/central_region.Rd | 2 man/combined_scaled_MAD_envelope_test.Rd | 4 man/deviation_test.Rd | 25 +++- man/global_envelope_test.Rd | 4 man/global_rq.Rd | 2 man/graph.fanova.Rd | 2 man/graph.flm.Rd | 4 tests/testthat/test-MAD.R | 7 + 30 files changed, 221 insertions(+), 196 deletions(-)
Title: Diagnostic Index Expectation Maximisation in R
Description: Likelihood-based genome polarisation finds which alleles of genomic markers
belong to which side of the barrier.
Co-estimates which individuals belong to either side of the barrier and barrier strength.
Uses expectation maximisation in likelihood framework. The method is described in
Baird et al. (2023) <doi:10.1111/2041-210X.14010>.
Author: Natalia Martinkova [aut, cre] ,
Stuart Baird [aut]
Maintainer: Natalia Martinkova <martinkova@ivb.cz>
Diff between diemr versions 1.4.1 dated 2024-09-23 and 1.4.2 dated 2024-12-02
DESCRIPTION | 6 MD5 | 34 +- NAMESPACE | 1 NEWS.md | 8 R/internal.r | 122 +++++++--- R/rank2map.r | 11 R/smoothPolarizedGenotypes.r | 64 +++-- R/vcf2diem.r | 11 inst/doc/Importing-data-for-genome-polarisation.html | 4 inst/doc/Understanding-genome-polarisation-output-files.html | 4 inst/doc/diemr-diagnostic-index-expecation-maximisation-in-r.R | 2 inst/doc/diemr-diagnostic-index-expecation-maximisation-in-r.Rmd | 2 inst/doc/diemr-diagnostic-index-expecation-maximisation-in-r.html | 6 man/rank2map.Rd | 7 man/smoothPolarizedGenotypes.Rd | 39 ++- man/truncatedLaplace.Rd |only man/unbiasedWeightedStateChoice.Rd |only tests/testthat/test_internal.r | 59 ++++ vignettes/diemr-diagnostic-index-expecation-maximisation-in-r.Rmd | 2 19 files changed, 281 insertions(+), 101 deletions(-)
Title: Bayesian partial least squares regression
Description: Fits the Bayesian partial least squares regression model
introduced in Urbas et al. (2024) <doi:10.1214/24-AOAS1947>. Suitable
for univariate and multivariate regression with high-dimensional data.
Author: Szymon Urbas [aut, cre],
Pierre Lovera [ctb],
Robert Daly [ctb],
Alan O'Riordan [ctb],
Donagh Berry [ctb],
Isobel Claire Gormley [ctb]
Maintainer: Szymon Urbas <szymon.urbas@mu.ie>
Diff between bplsr versions 1.0.0 dated 2024-11-12 and 1.0.1 dated 2024-12-02
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/BPLSR.R | 4 ++-- README.md | 8 ++++++++ man/bplsr.Rd | 6 +++--- 5 files changed, 21 insertions(+), 13 deletions(-)
Title: Tidy Finance Helper Functions
Description: Helper functions for empirical research in financial
economics, addressing a variety of topics covered in Scheuch, Voigt,
and Weiss (2023) <doi:10.1201/b23237>. The package is designed to
provide shortcuts for issues extensively discussed in the book,
facilitating easier application of its concepts. For more information
and resources related to the book, visit
<https://www.tidy-finance.org/r/index.html>.
Author: Christoph Scheuch [aut, cre, cph]
,
Stefan Voigt [aut, cph] ,
Patrick Weiss [aut, cph] ,
Maximilian Muecke [ctb]
Maintainer: Christoph Scheuch <christoph@tidy-intelligence.com>
Diff between tidyfinance versions 0.4.1 dated 2024-09-04 and 0.4.2 dated 2024-12-02
DESCRIPTION | 23 - MD5 | 59 ++-- NAMESPACE | 4 NEWS.md | 16 + R/add_lag_columns.R |only R/compute_long_short_returns.R | 2 R/data_options.R | 8 R/download_data_factors.R | 29 ++ R/download_data_macro_predictors.R | 30 ++ R/download_data_osap.R | 13 - R/download_data_wrds_ccm_links.R | 23 - R/global_variables.R | 2 R/handle_download_error.R |only R/lag_column.R | 2 R/tidyfinance-package.R | 2 R/winsorize.R | 7 README.md | 14 - inst/doc/dates-in-tidyfinance.R | 92 +++---- inst/doc/dates-in-tidyfinance.html | 230 +++++++++---------- inst/doc/using-tidyfinance.R | 16 - inst/doc/using-tidyfinance.Rmd | 3 inst/doc/using-tidyfinance.html | 35 -- man/add_lag_columns.Rd |only man/data_options.Rd | 3 man/download_data_factors_q.Rd | 1 man/download_data_macro_predictors.Rd | 2 man/download_data_wrds_ccm_links.Rd | 17 - man/lag_column.Rd | 2 man/tidyfinance-package.Rd | 6 tests/testthat/test-add_lag_columns.R |only tests/testthat/test-download_data_factors.R |only tests/testthat/test-download_data_macro_predictors.R |only tests/testthat/test-download_data_osap.R |only vignettes/using-tidyfinance.Rmd | 3 34 files changed, 360 insertions(+), 284 deletions(-)
Title: Sparse Multi-Type Regularized Feature Modeling
Description: Implementation of the SMuRF algorithm of Devriendt et al. (2021) <doi:10.1016/j.insmatheco.2020.11.010> to fit generalized linear models (GLMs) with multiple types of predictors via regularized maximum likelihood.
Author: Tom Reynkens [aut, cre] ,
Sander Devriendt [aut],
Katrien Antonio [aut]
Maintainer: Tom Reynkens <tomreynkens.r@gmail.com>
Diff between smurf versions 1.1.5 dated 2023-03-22 and 1.1.6 dated 2024-12-02
DESCRIPTION | 14 ++--- MD5 | 14 ++--- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 9 +++ inst/doc/smurf.R | 124 +++++++++++++++++++++++++-------------------------- inst/doc/smurf.html | 15 +++--- man/smurf-package.Rd | 2 8 files changed, 94 insertions(+), 84 deletions(-)
Title: Robust Sparse PCA using the ROSPCA Algorithm
Description: Implementation of robust sparse PCA using the ROSPCA algorithm
of Hubert et al. (2016) <DOI:10.1080/00401706.2015.1093962>.
Author: Tom Reynkens [aut, cre] ,
Valentin Todorov [ctb] ,
Mia Hubert [ctb],
Eric Schmitt [ctb],
Tim Verdonck [ctb]
Maintainer: Tom Reynkens <tomreynkens.r@gmail.com>
Diff between rospca versions 1.1.0 dated 2024-03-31 and 1.1.1 dated 2024-12-02
DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- R/Robpca.R | 2 +- R/Rospca.R | 2 +- inst/NEWS.Rd | 10 +++++++++- 5 files changed, 21 insertions(+), 13 deletions(-)
Title: Functions from "Reinsurance: Actuarial and Statistical Aspects"
Description: Functions from the book "Reinsurance: Actuarial and Statistical Aspects" (2017) by Hansjoerg Albrecher, Jan Beirlant and Jef Teugels <https://www.wiley.com/en-us/Reinsurance%3A+Actuarial+and+Statistical+Aspects-p-9780470772683>.
Author: Tom Reynkens [aut, cre] ,
Roel Verbelen [aut] ,
Anastasios Bardoutsos [ctb] ,
Dries Cornilly [ctb] ,
Yuri Goegebeur [ctb] ,
Klaus Herrmann [ctb]
Maintainer: Tom Reynkens <tomreynkens.r@gmail.com>
Diff between ReIns versions 1.0.14 dated 2023-11-03 and 1.0.15 dated 2024-12-02
DESCRIPTION | 12 ++++---- MD5 | 10 +++--- build/vignette.rds |binary inst/NEWS.Rd | 9 ++++-- inst/doc/ReIns.R | 8 ++--- inst/doc/ReIns.html | 77 ++++++++++++++++++++++++++-------------------------- 6 files changed, 61 insertions(+), 55 deletions(-)
Title: Professional Comprehensive Omics Data Analysis
Description: Provides a comprehensive suite of tools for analyzing omics data. It includes functionalities for alpha diversity analysis, beta
diversity analysis, differential abundance analysis, community assembly analysis, visualization of phylogenetic tree, and
functional enrichment analysis. With a progressive approach, the package offers a range of analysis methods to explore and
understand the complex communities. It is designed to support researchers and practitioners in conducting in-depth and
professional omics data analysis.
Author: Chen Peng [aut, cre]
Maintainer: Chen Peng <pengchen2001@zju.edu.cn>
Diff between pctax versions 0.1.1 dated 2024-04-10 and 0.1.3 dated 2024-12-02
pctax-0.1.1/pctax/vignettes/pctax_cache/html/lib_bec07e0751cc99eaa0386bda0f0304cb.rdb |only pctax-0.1.1/pctax/vignettes/pctax_cache/html/lib_bec07e0751cc99eaa0386bda0f0304cb.rdx |only pctax-0.1.1/pctax/vignettes/pctax_cache/html/setup_a4314fb22343ed0d94f461570354dd3f.rdb |only pctax-0.1.1/pctax/vignettes/pctax_cache/html/setup_a4314fb22343ed0d94f461570354dd3f.rdx |only pctax-0.1.1/pctax/vignettes/pctax_cache/html/unnamed-chunk-2_41a4a46e9455db91e15ad66260bed593.rdb |only pctax-0.1.1/pctax/vignettes/pctax_cache/html/unnamed-chunk-2_41a4a46e9455db91e15ad66260bed593.rdx |only pctax-0.1.3/pctax/DESCRIPTION | 28 pctax-0.1.3/pctax/MD5 | 87 +- pctax-0.1.3/pctax/NAMESPACE | 3 pctax-0.1.3/pctax/NEWS.md | 17 pctax-0.1.3/pctax/R/Rtaxonkit.R | 50 - pctax-0.1.3/pctax/R/a_diversity.R | 4 pctax-0.1.3/pctax/R/b_analyse.R | 14 pctax-0.1.3/pctax/R/data.R | 12 pctax-0.1.3/pctax/R/diff_analyse.R | 8 pctax-0.1.3/pctax/R/eco_micro.R | 11 pctax-0.1.3/pctax/R/functional.R | 27 pctax-0.1.3/pctax/R/other_software.R | 60 + pctax-0.1.3/pctax/R/pctax-package.R | 2 pctax-0.1.3/pctax/R/phylogenetic.R | 434 +++++++++- pctax-0.1.3/pctax/README.md | 27 pctax-0.1.3/pctax/data/all_ec_info.rda |binary pctax-0.1.3/pctax/data/all_sp_la_zh_name.rda |only pctax-0.1.3/pctax/inst/doc/pctax.html | 2 pctax-0.1.3/pctax/man/all_sp_la_zh_name.Rd |only pctax-0.1.3/pctax/man/ann_tree.Rd | 3 pctax-0.1.3/pctax/man/b_analyse.Rd | 2 pctax-0.1.3/pctax/man/check_taxonkit.Rd | 13 pctax-0.1.3/pctax/man/convert_taxon_name.Rd |only pctax-0.1.3/pctax/man/download_taxonkit_dataset.Rd | 13 pctax-0.1.3/pctax/man/figures/README-unnamed-chunk-2-1.png |binary pctax-0.1.3/pctax/man/figures/README-unnamed-chunk-3-1.png |only pctax-0.1.3/pctax/man/geo_sim.Rd | 3 pctax-0.1.3/pctax/man/get_all_sp_la_zh_name.Rd |only pctax-0.1.3/pctax/man/install_taxonkit.Rd | 13 pctax-0.1.3/pctax/man/name_or_id2df.Rd | 13 pctax-0.1.3/pctax/man/ncm.Rd | 3 pctax-0.1.3/pctax/man/plot.a_res.Rd | 2 pctax-0.1.3/pctax/man/plot_element_cycle.Rd | 3 pctax-0.1.3/pctax/man/plot_two_tree.Rd |only pctax-0.1.3/pctax/man/tax_lca.Rd |only pctax-0.1.3/pctax/man/taxonkit_filter.Rd | 13 pctax-0.1.3/pctax/man/taxonkit_lca.Rd | 13 pctax-0.1.3/pctax/man/taxonkit_lineage.Rd | 13 pctax-0.1.3/pctax/man/taxonkit_list.Rd | 13 pctax-0.1.3/pctax/man/taxonkit_name2taxid.Rd | 13 pctax-0.1.3/pctax/man/taxonkit_reformat.Rd | 13 pctax-0.1.3/pctax/man/z_diversity.Rd | 2 pctax-0.1.3/pctax/vignettes/pctax_cache/html/lib_edaa109a9155baa43419851f33b3cf81.rdb |only pctax-0.1.3/pctax/vignettes/pctax_cache/html/lib_edaa109a9155baa43419851f33b3cf81.rdx |only pctax-0.1.3/pctax/vignettes/pctax_cache/html/setup_8ae11416e5c5639c1c730c1286b53fc5.rdb |only pctax-0.1.3/pctax/vignettes/pctax_cache/html/setup_8ae11416e5c5639c1c730c1286b53fc5.rdx |only pctax-0.1.3/pctax/vignettes/pctax_cache/html/unnamed-chunk-2_a4c6eae63fe4b35c079f4cfe25d48d88.rdb |only pctax-0.1.3/pctax/vignettes/pctax_cache/html/unnamed-chunk-2_a4c6eae63fe4b35c079f4cfe25d48d88.rdx |only 54 files changed, 810 insertions(+), 124 deletions(-)
Title: Multiple Imputation Through 'XGBoost'
Description: Multiple imputation using 'XGBoost', subsampling, and predictive mean
matching as described in Deng and Lumley (2023)
<doi:10.1080/10618600.2023.2252501>. The package supports various types of
variables, offers flexible settings, and enables saving an imputation model to impute
new data. Data processing and memory usage have been optimised to speed up
the imputation process.
Author: Yongshi Deng [aut, cre] ,
Thomas Lumley [ths]
Maintainer: Yongshi Deng <agnes.yongshideng@gmail.com>
Diff between mixgb versions 1.0.2 dated 2023-02-16 and 1.5.2 dated 2024-12-02
mixgb-1.0.2/mixgb/R/plot_1var.R |only mixgb-1.0.2/mixgb/R/plot_2vars.R |only mixgb-1.0.2/mixgb/R/plot_3vars.R |only mixgb-1.0.2/mixgb/man/plot_1num1fac.Rd |only mixgb-1.0.2/mixgb/man/plot_1num2fac.Rd |only mixgb-1.0.2/mixgb/man/plot_2fac.Rd |only mixgb-1.0.2/mixgb/man/plot_2num.Rd |only mixgb-1.0.2/mixgb/man/plot_2num1fac.Rd |only mixgb-1.0.2/mixgb/man/plot_bar.Rd |only mixgb-1.0.2/mixgb/man/plot_box.Rd |only mixgb-1.0.2/mixgb/man/plot_hist.Rd |only mixgb-1.0.2/mixgb/vignettes/web |only mixgb-1.5.2/mixgb/DESCRIPTION | 39 mixgb-1.5.2/mixgb/MD5 | 131 - mixgb-1.5.2/mixgb/NAMESPACE | 99 - mixgb-1.5.2/mixgb/NEWS.md |only mixgb-1.5.2/mixgb/R/RcppExports.R |only mixgb-1.5.2/mixgb/R/createNA.R | 140 - mixgb-1.5.2/mixgb/R/data_clean.R | 308 +-- mixgb-1.5.2/mixgb/R/data_preprocess.R | 194 +- mixgb-1.5.2/mixgb/R/globals.R | 14 mixgb-1.5.2/mixgb/R/impute_new.R | 438 ++-- mixgb-1.5.2/mixgb/R/initial_imp.R | 492 ++--- mixgb-1.5.2/mixgb/R/initial_impnew.R | 508 ++--- mixgb-1.5.2/mixgb/R/mixgb-package.R | 61 mixgb-1.5.2/mixgb/R/mixgb.R | 921 ++++++---- mixgb-1.5.2/mixgb/R/mixgb_boot.R | 382 ++-- mixgb-1.5.2/mixgb/R/mixgb_boot_xgb_save.R |only mixgb-1.5.2/mixgb/R/mixgb_bootsave.R | 624 +++--- mixgb-1.5.2/mixgb/R/mixgb_cv.R | 203 +- mixgb-1.5.2/mixgb/R/mixgb_load_use.R |only mixgb-1.5.2/mixgb/R/mixgb_null.R | 426 +++- mixgb-1.5.2/mixgb/R/mixgb_save.R | 783 ++++++-- mixgb-1.5.2/mixgb/R/mixgb_use.R | 256 +- mixgb-1.5.2/mixgb/R/mixgb_xgb_save.R |only mixgb-1.5.2/mixgb/R/nhanes3.R | 48 mixgb-1.5.2/mixgb/R/nhanes3_newborn.R | 68 mixgb-1.5.2/mixgb/R/pmm.R | 82 mixgb-1.5.2/mixgb/R/save_vars.R | 98 - mixgb-1.5.2/mixgb/R/save_yhatobs.R | 687 +++++-- mixgb-1.5.2/mixgb/R/show_var.R | 55 mixgb-1.5.2/mixgb/R/utils-pipe.R |only mixgb-1.5.2/mixgb/R/validation.R | 149 - mixgb-1.5.2/mixgb/build/partial.rdb |only mixgb-1.5.2/mixgb/build/vignette.rds |binary mixgb-1.5.2/mixgb/inst/CITATION |only mixgb-1.5.2/mixgb/inst/doc/Imputing-newdata.R | 67 mixgb-1.5.2/mixgb/inst/doc/Imputing-newdata.Rmd | 152 - mixgb-1.5.2/mixgb/inst/doc/Imputing-newdata.html | 885 ++++----- mixgb-1.5.2/mixgb/inst/doc/Using-mixgb.R | 108 - mixgb-1.5.2/mixgb/inst/doc/Using-mixgb.Rmd | 313 +-- mixgb-1.5.2/mixgb/inst/doc/Using-mixgb.html | 1098 ++++++------ mixgb-1.5.2/mixgb/man/createNA.Rd | 70 mixgb-1.5.2/mixgb/man/data_clean.Rd | 56 mixgb-1.5.2/mixgb/man/default_params.Rd |only mixgb-1.5.2/mixgb/man/default_params_cran.Rd |only mixgb-1.5.2/mixgb/man/figures/README-unnamed-chunk-14-1.png |binary mixgb-1.5.2/mixgb/man/figures/README-unnamed-chunk-14-2.png |binary mixgb-1.5.2/mixgb/man/figures/README-unnamed-chunk-14-3.png |binary mixgb-1.5.2/mixgb/man/figures/README-unnamed-chunk-14-4.png |binary mixgb-1.5.2/mixgb/man/figures/README-unnamed-chunk-16-1.png |only mixgb-1.5.2/mixgb/man/figures/README-unnamed-chunk-16-2.png |only mixgb-1.5.2/mixgb/man/figures/README-unnamed-chunk-16-3.png |only mixgb-1.5.2/mixgb/man/figures/README-unnamed-chunk-16-4.png |only mixgb-1.5.2/mixgb/man/impute_new.Rd | 105 - mixgb-1.5.2/mixgb/man/mixgb-package.Rd | 55 mixgb-1.5.2/mixgb/man/mixgb.Rd | 223 +- mixgb-1.5.2/mixgb/man/mixgb_cv.Rd | 109 - mixgb-1.5.2/mixgb/man/nhanes3.Rd | 72 mixgb-1.5.2/mixgb/man/nhanes3_newborn.Rd | 92 - mixgb-1.5.2/mixgb/man/pipe.Rd |only mixgb-1.5.2/mixgb/man/pmm.Rd | 48 mixgb-1.5.2/mixgb/man/pmm.multiclass.Rd | 48 mixgb-1.5.2/mixgb/man/show_var.Rd | 65 mixgb-1.5.2/mixgb/man/sortNA.Rd | 24 mixgb-1.5.2/mixgb/src |only mixgb-1.5.2/mixgb/vignettes/Imputing-newdata.Rmd | 152 - mixgb-1.5.2/mixgb/vignettes/Using-mixgb.Rmd | 313 +-- 78 files changed, 6242 insertions(+), 5019 deletions(-)
Title: Univariate and Multivariate Tests for Multimodal and Other
Networks
Description: A set of tools for testing networks.
It includes functions for univariate and multivariate
conditional uniform graph and quadratic assignment procedure testing,
and network regression.
The package is a complement to
'Multimodal Political Networks' (2021, ISBN:9781108985000),
and includes various datasets used in the book.
Built on the 'manynet' package, all functions operate with matrices,
edge lists, and 'igraph', 'network', and 'tidygraph' objects,
and on one-mode and two-mode (bipartite) networks.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb] ,
Jael Tan [ctb] ,
Bernhard Bieri [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between migraph versions 1.4.3 dated 2024-11-06 and 1.4.5 dated 2024-12-02
DESCRIPTION | 14 ++++++------ MD5 | 14 ++++++------ NAMESPACE | 2 + NEWS.md | 25 ++++++++++++++++++++++ R/class_models.R | 16 ++++++++++++++ R/data_mpn.R | 2 - R/model_regression.R | 56 ++++++++++++++++++++++++++++++++++++++------------- man/mpn_elite_usa.Rd | 2 - 8 files changed, 101 insertions(+), 30 deletions(-)
Title: Kirill's Miscellaneous Functions
Description: A collection of useful functions not found anywhere else,
mainly for programming: Pretty intervals, generalized lagged
differences, checking containment in an interval, and an alternative
interface to assign().
Author: Kirill Mueller [aut, cre]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between kimisc versions 0.4 dated 2017-12-18 and 1.0.0 dated 2024-12-02
kimisc-0.4/kimisc/tests/testthat/test-kimisc.R |only kimisc-1.0.0/kimisc/DESCRIPTION | 36 ++--- kimisc-1.0.0/kimisc/LICENSE |only kimisc-1.0.0/kimisc/MD5 | 91 +++++++------- kimisc-1.0.0/kimisc/NEWS.md | 11 + kimisc-1.0.0/kimisc/R/coalesce_na.R | 8 - kimisc-1.0.0/kimisc/R/cut.R | 11 + kimisc-1.0.0/kimisc/R/export.R | 16 +- kimisc-1.0.0/kimisc/R/gdiff.R | 27 ++-- kimisc-1.0.0/kimisc/R/hms_to_seconds.R | 4 kimisc-1.0.0/kimisc/R/in_interval.R | 20 +-- kimisc-1.0.0/kimisc/R/kimisc-package.R | 6 kimisc-1.0.0/kimisc/R/list_to_df.R | 10 + kimisc-1.0.0/kimisc/R/nlist.R | 29 ++-- kimisc-1.0.0/kimisc/R/ofactor.R | 12 + kimisc-1.0.0/kimisc/R/sample_data_frame.R | 9 + kimisc-1.0.0/kimisc/R/seconds_to_hms.R | 4 kimisc-1.0.0/kimisc/R/thisfile.R | 55 +++++--- kimisc-1.0.0/kimisc/R/tll.R | 13 +- kimisc-1.0.0/kimisc/R/vswitch.R | 4 kimisc-1.0.0/kimisc/man/coalesce.na-deprecated.Rd | 31 ++-- kimisc-1.0.0/kimisc/man/cut_format.Rd | 24 ++- kimisc-1.0.0/kimisc/man/df_to_list-deprecated.Rd | 29 ++-- kimisc-1.0.0/kimisc/man/export.Rd | 4 kimisc-1.0.0/kimisc/man/export.list.Rd | 6 kimisc-1.0.0/kimisc/man/hms.to.seconds-deprecated.Rd | 27 ++-- kimisc-1.0.0/kimisc/man/in.interval.lo.Rd | 4 kimisc-1.0.0/kimisc/man/in.interval.ro.Rd | 4 kimisc-1.0.0/kimisc/man/kimisc-deprecated.Rd | 26 ++-- kimisc-1.0.0/kimisc/man/kimisc-package.Rd | 12 - kimisc-1.0.0/kimisc/man/list_to_df-deprecated.Rd | 27 ++-- kimisc-1.0.0/kimisc/man/nc-deprecated.Rd | 38 +++-- kimisc-1.0.0/kimisc/man/nin.interval.lo.Rd | 4 kimisc-1.0.0/kimisc/man/nin.interval.ro.Rd | 4 kimisc-1.0.0/kimisc/man/nlist-deprecated.Rd | 38 +++-- kimisc-1.0.0/kimisc/man/ofactor-deprecated.Rd | 31 ++-- kimisc-1.0.0/kimisc/man/sample.rows-deprecated.Rd | 33 +++-- kimisc-1.0.0/kimisc/man/seconds.to.hms-deprecated.Rd | 29 ++-- kimisc-1.0.0/kimisc/man/thisfile-deprecated.Rd | 33 ++--- kimisc-1.0.0/kimisc/man/tll-deprecated.Rd | 31 ++-- kimisc-1.0.0/kimisc/man/vswitch-deprecated.Rd | 27 ++-- kimisc-1.0.0/kimisc/tests/testthat.R |only kimisc-1.0.0/kimisc/tests/testthat/scripts/thisfile-cat.R | 2 kimisc-1.0.0/kimisc/tests/testthat/test-cut.R | 28 ++-- kimisc-1.0.0/kimisc/tests/testthat/test-gdiff.R | 20 +-- kimisc-1.0.0/kimisc/tests/testthat/test-list_to_df.R | 2 kimisc-1.0.0/kimisc/tests/testthat/test-thisfile.R | 2 kimisc-1.0.0/kimisc/tests/testthat/test-vswitch.R | 24 ++- 48 files changed, 519 insertions(+), 387 deletions(-)
Title: High Dimensional Time Series Analysis Tools
Description: An implementation for high-dimensional time series analysis methods, including factor model for vector time series
proposed by Lam and Yao (2012) <doi:10.1214/12-AOS970> and Chang, Guo and Yao (2015)
<doi:10.1016/j.jeconom.2015.03.024>, martingale difference test proposed by
Chang, Jiang and Shao (2023) <doi:10.1016/j.jeconom.2022.09.001>, principal
component analysis for vector time series proposed by Chang, Guo and Yao (2018) <doi:10.1214/17-AOS1613>,
cointegration analysis proposed by Zhang, Robinson and Yao (2019)
<doi:10.1080/01621459.2018.1458620>, unit root test proposed by Chang, Cheng and Yao (2022)
<doi:10.1093/biomet/asab034>, white noise test proposed by Chang, Yao and Zhou (2017)
<doi:10.1093/biomet/asw066>, CP-decomposition for matrix time
series proposed by Chang et al. (2023) <doi:10.1093/jrsssb/qkac011> and
Chang et al. (2024) <doi:10.48550/arXiv.2410.05634>, and statistical inference for
spectral density matrix pro [...truncated...]
Author: Jinyuan Chang [aut],
Jing He [aut],
Chen Lin [aut, cre],
Qiwei Yao [aut]
Maintainer: Chen Lin <linchen@smail.swufe.edu.cn>
Diff between HDTSA versions 1.0.4 dated 2024-09-03 and 1.0.5 dated 2024-12-02
DESCRIPTION | 47 +- MD5 | 88 ++- NAMESPACE | 8 R/CP_functions_unified.R | 718 ++++++++++++++++++++------------ R/HDSreg.R | 134 +++-- R/HDTSA-package.R |only R/PCA4_TS.R | 327 ++++++-------- R/RcppExports.R | 24 - R/Tools_SpecTest.R | 395 ++++++----------- R/Tools_martingale.R | 169 ++++--- R/coint.R | 232 +++++----- R/data.R |only R/factors.R | 124 +++-- R/permutationFDR.R | 33 - R/permutationMax.R | 24 - R/predict.R |only R/print.R | 148 ++++-- R/segmentTS.R | 123 +---- R/tools_wntest.R | 143 +++--- R/urtest.R | 80 +-- build |only data |only man/CP_MTS.Rd | 209 +++++++-- man/Coint.Rd | 124 +++-- man/DGP.CP.Rd | 72 +-- man/Factors.Rd | 82 ++- man/Fama-French-data.Rd |only man/HDSReg.Rd | 129 +++-- man/HDTSA-package.Rd |only man/MartG_test.Rd | 115 ++--- man/PCA_TS.Rd | 276 +++++------- man/QWIdata.Rd |only man/SpecMulTest.Rd | 52 +- man/SpecTest.Rd | 60 +- man/UR_test.Rd | 74 +-- man/US-Industrial-Production-indices.Rd |only man/WN_test.Rd | 116 ++--- man/predict.factors.Rd |only man/predict.mtscp.Rd |only man/predict.tspca.Rd |only src/Makevars | 22 src/Makevars.win | 22 src/Martingale.cpp | 4 src/PCAtools.cpp | 25 - src/RcppExports.cpp | 98 +++- src/WNtest.cpp | 16 src/testtools.cpp | 28 - src/testtools.h | 2 src/tool4specTest.cpp | 121 +++++ src/tools4cp.cpp | 5 50 files changed, 2505 insertions(+), 1964 deletions(-)
Title: FAIR Data - Workflow Management
Description: Tools, methods and processes for the management
of analysis workflows. These lightweight solutions facilitate
structuring R&D activities. These solutions were developed to comply
with Good Documentation Practice (GDP),
with FAIR principles as discussed by Jacobsen et al. (2017) <doi:10.1162/dint_r_00024>,
and with ALCOA+ principles as proposed by the U.S. FDA.
Author: Gregoire Thomas [aut, cre]
Maintainer: Gregoire Thomas <gregoire.thomas@SQU4RE.com>
Diff between D4TAlink.light versions 2.1.14 dated 2023-10-04 and 2.1.17 dated 2024-12-02
DESCRIPTION | 23 + MD5 | 103 ++++---- NAMESPACE | 155 +++++++------ NEWS | 20 + R/D4TAlink-common-args-doc.R | 56 ++-- R/D4TAlink-doc.R | 6 R/createTask.R | 66 ++--- R/init.R | 58 ++-- R/initTask.R | 76 +++--- R/listTasks.R | 138 +++++------ R/loadTask.R | 16 - R/pathGenerators.R | 156 ++++++------- R/pythonio.R |only R/taskArchive.R | 186 +++++++-------- R/taskFiles.R | 17 - R/taskGlobals.R | 2 R/taskID.R | 14 - R/taskPaths.R | 298 ++++++++++++------------- R/taskRmarkdown.R | 16 - R/taskRscript.R | 66 ++--- build/vignette.rds |binary inst/doc/D4TAlink_basics.R | 388 ++++++++++++++++----------------- inst/doc/D4TAlink_basics.Rmd | 9 inst/doc/D4TAlink_basics.html | 24 +- inst/doc/D4TAlink_quickstart.R | 110 ++++----- inst/doc/D4TAlink_quickstart.Rmd | 194 ++++++++-------- inst/doc/D4TAlink_quickstart.html | 6 inst/template/SQU4REtemplate.Rmd | 4 inst/template/template.R | 88 +++---- inst/template/template.Rmd | 444 +++++++++++++++++++------------------- man/D4TAlink-common-args.Rd | 82 +++---- man/D4TAlinkTask.Rd | 154 ++++++------- man/catReport.Rd | 3 man/createTask.Rd | 64 ++--- man/initTask.Rd | 98 ++++---- man/jpegReport.Rd | 16 - man/loadTask.Rd | 68 ++--- man/pdfReport.Rd | 44 ++- man/pngReport.Rd | 14 - man/readFeather.Rd |only man/readPickle.Rd |only man/readReportTable.Rd | 109 +++++++++ man/renderTaskRmd.Rd | 1 man/saveFeather.Rd |only man/savePickle.Rd |only man/saveReportJSON.Rd | 12 - man/saveReportTable.Rd | 40 +++ man/saveReportXls.Rd | 3 man/scanReport.Rd | 14 - tests/testthat.R | 5 tests/testthat/test01.R | 10 vignettes/D4TAlink_basics.Rmd | 9 vignettes/D4TAlink_basics.md | 10 vignettes/D4TAlink_quickstart.Rmd | 194 ++++++++-------- vignettes/D4TAlink_quickstart.md | 206 ++++++++--------- 55 files changed, 2039 insertions(+), 1856 deletions(-)
More information about D4TAlink.light at CRAN
Permanent link
Title: 'cpt-city' Colour Gradients
Description: Incorporates colour gradients from the 'cpt-city' web archive available at <http://seaviewsensing.com/pub/cpt-city/>.
Author: Sergio Ibarra-Espinosa [aut, cre]
Maintainer: Sergio Ibarra-Espinosa <zergioibarra@gmail.com>
Diff between cptcity versions 1.0.6 dated 2020-10-02 and 1.1.1 dated 2024-12-02
DESCRIPTION | 17 +++--- MD5 | 24 +++++---- NAMESPACE | 4 + NEWS.md | 93 +++++++++++++++++++------------------ R/cpt.R | 115 ++++++++++++++++++++-------------------------- R/cpt_names.R | 4 - R/show_cpt.R |only data/cpt_names.rda |binary inst/CITATION | 10 ++-- man/cpt.Rd | 7 -- man/cpt_names.Rd | 4 - man/cptcity.Rd | 13 +++++ man/show_cpt.Rd |only tests/testthat/test-cpt.R | 40 +++++++--------- 14 files changed, 167 insertions(+), 164 deletions(-)
Title: Client for the Deutsche Bundesbank and European Central Bank
APIs
Description: Download data and metadata from the 'Bundesbank SDMX Web
Service API' found at
<https://www.bundesbank.de/en/statistics/time-series-databases/help-for-sdmx-web-service/web-service-interface-data>
and the 'ECB Data Portal API' found at
<https://data.ecb.europa.eu/help/api/overview>.
Author: Maximilian Muecke [aut, cre]
Maintainer: Maximilian Muecke <muecke.maximilian@gmail.com>
Diff between bbk versions 0.4.0 dated 2024-07-08 and 0.5.0 dated 2024-12-02
DESCRIPTION | 16 ++++++++-------- MD5 | 25 ++++++++++++++----------- NAMESPACE | 2 ++ NEWS.md | 5 +++++ R/bbk-package.R | 3 +++ R/bbk.R | 17 ++++++++++------- R/ecb-euro-rates.R |only R/ecb.R | 6 +++--- R/utils.R | 6 +----- README.md | 4 ++-- man/bbk-package.Rd | 2 +- man/ecb_euro_rates.Rd |only man/figures/README-plotting-1.png |binary tests/testthat/test-bbk.R | 1 + tests/testthat/test-ecb-euro-rates.R |only 15 files changed, 50 insertions(+), 37 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-11-19 0.9.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-11-26 2024.11.19
2024-11-18 2024.11.15
2024-10-11 2024.10.5
2024-10-04 2024.10.3
2024-09-27 2024.9.25
2024-04-29 2024.4.23
2024-04-22 2024.4.17
2024-04-13 2024.4.12
2024-03-08 2024.3.5
Title: Simultaneous Multi-Bias Adjustment
Description: Quantify the causal effect of a binary exposure on a binary
outcome with adjustment for multiple biases. The functions can
simultaneously adjust for any combination of uncontrolled confounding,
exposure/outcome misclassification, and selection bias.
The underlying method generalizes the concept of combining inverse
probability of selection weighting with predictive value weighting.
Simultaneous multi-bias analysis can be used to enhance the validity
and transparency of real-world evidence obtained from observational,
longitudinal studies. Based on the work from Paul Brendel, Aracelis Torres,
and Onyebuchi Arah (2023) <doi:10.1093/ije/dyad001>.
Author: Paul Brendel [aut, cre, cph]
Maintainer: Paul Brendel <pcbrendel@gmail.com>
Diff between multibias versions 1.6 dated 2024-10-26 and 1.6.1 dated 2024-12-02
DESCRIPTION | 6 MD5 | 36 +-- NEWS.md | 9 R/adjust_em.R | 65 +++--- R/adjust_em_om.R | 240 ++++++++++++++++++------ R/adjust_em_sel.R | 360 +++++++++++++++++++++++++++--------- R/adjust_om.R | 66 +++--- R/adjust_sel.R | 51 ++--- R/adjust_uc.R | 55 +++-- R/causal_data.R | 37 ++- R/utils.R | 42 ++++ man/adjust_em.Rd | 5 man/adjust_em_om.Rd | 43 +++- man/adjust_em_sel.Rd | 42 +++- man/adjust_om.Rd | 5 man/adjust_sel.Rd | 5 man/adjust_uc.Rd | 5 tests/testthat/test-adjust_em_om.R | 24 ++ tests/testthat/test-adjust_em_sel.R | 24 ++ 19 files changed, 830 insertions(+), 290 deletions(-)
Title: A Finer Way to Render 3D Illustrated Objects in 'grid' Using
Affine Transformations
Description: Dilate, permute, project, reflect, rotate, shear, and translate 2D and 3D points. Supports parallel projections including oblique projections such as the cabinet projection as well as axonometric projections such as the isometric projection. Use 'grid's "affine transformation" feature to render illustrated flat surfaces.
Author: Trevor L. Davis [aut, cre]
Maintainer: Trevor L. Davis <trevor.l.davis@gmail.com>
Diff between affiner versions 0.1.1 dated 2024-10-14 and 0.1.3 dated 2024-12-02
DESCRIPTION | 11 ++- MD5 | 30 +++++----- NEWS.md | 6 ++ R/affineGrob.r | 7 ++ R/isocubeGrob.r | 27 ++++++++- README.md | 33 ++++++----- build/vignette.rds |binary inst/doc/affiner.R | 18 ++++-- inst/doc/affiner.Rmd | 25 +++++--- inst/doc/affiner.html | 111 +++++++++++++++++++------------------ man/affineGrob.Rd | 11 +++ man/figures/README-hex-logo2-1.png |binary man/isocubeGrob.Rd | 31 ++++++++++ tests/testthat/test-affineGrob.r | 2 tests/testthat/test-isocubeGrob.r | 4 - vignettes/affiner.Rmd | 25 +++++--- 16 files changed, 224 insertions(+), 117 deletions(-)