Title: Web Application Framework for R
Description: Makes it incredibly easy to build interactive web
applications with R. Automatic "reactive" binding between inputs and
outputs and extensive prebuilt widgets make it possible to build
beautiful, responsive, and powerful applications with minimal effort.
Author: Winston Chang [aut, cre] ,
Joe Cheng [aut],
JJ Allaire [aut],
Carson Sievert [aut] ,
Barret Schloerke [aut] ,
Yihui Xie [aut],
Jeff Allen [aut],
Jonathan McPherson [aut],
Alan Dipert [aut],
Barbara Borges [aut],
Posit Software, PBC [cph, fnd],
jQuery [...truncated...]
Maintainer: Winston Chang <winston@posit.co>
Diff between shiny versions 1.9.1 dated 2024-08-01 and 1.10.0 dated 2024-12-13
DESCRIPTION | 15 MD5 | 63 - NEWS.md | 40 - R/bind-cache.R | 2 R/bookmark-state.R | 6 R/conditions.R | 233 ++++-- R/extended-task.R | 48 + R/react.R | 14 R/reactives.R | 2 R/runapp.R | 4 R/shiny.R | 2 inst/www/shared/busy-indicators/busy-indicators.css | 4 inst/www/shared/ionrangeslider/css/ion.rangeSlider.css | 4 inst/www/shared/ionrangeslider/scss/shiny.scss | 5 inst/www/shared/shiny-autoreload.js | 2 inst/www/shared/shiny-showcase.css | 2 inst/www/shared/shiny-showcase.js | 2 inst/www/shared/shiny-testmode.js | 2 inst/www/shared/shiny.js | 651 +++++++++-------- inst/www/shared/shiny.js.map | 8 inst/www/shared/shiny.min.css | 2 inst/www/shared/shiny.min.js | 4 inst/www/shared/shiny.min.js.map | 8 man/ExtendedTask.Rd | 50 + man/bindCache.Rd | 2 man/runExample.Rd | 4 tests/testthat/_snaps/stacks-deep.md |only tests/testthat/_snaps/stacks.md |only tests/testthat/test-inline-markdown.R | 10 tests/testthat/test-promise-domains.R |only tests/testthat/test-reactivity.r | 229 +---- tests/testthat/test-reactlog.R | 12 tests/testthat/test-stacks-deep.R | 211 +++++ tests/testthat/test-stacks.R | 96 +- 34 files changed, 1106 insertions(+), 631 deletions(-)
Title: Interface to 'Lp_solve' v. 5.5 to Solve Linear/Integer Programs
Description: Lp_solve is freely available (under LGPL 2) software for
solving linear, integer and mixed integer programs. In this
implementation we supply a "wrapper" function in C and some R
functions that solve general linear/integer problems,
assignment problems, and transportation problems. This version
calls lp_solve version 5.5.
Author: Gabor Csardi [cre],
Michel Berkelaar [aut]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between lpSolve versions 5.6.22 dated 2024-11-08 and 5.6.23 dated 2024-12-13
DESCRIPTION | 6 ++--- MD5 | 8 +++--- NEWS.md | 4 +++ src/lp_lib.c | 2 - src/myblas.c | 68 +++++++---------------------------------------------------- 5 files changed, 21 insertions(+), 67 deletions(-)
Title: Download Google Sheets Using Just the URL
Description: Simple package to download Google Sheets using just the sharing
link. Spreadsheets can be downloaded as a data frame, or as plain text to parse
manually. Google Sheets is the new name for Google Docs Spreadsheets <https://www.google.com/sheets/about>.
Author: Max Conway [aut, cre]
Maintainer: Max Conway <conway.max1@gmail.com>
Diff between gsheet versions 0.4.5 dated 2020-04-07 and 0.4.6 dated 2024-12-13
DESCRIPTION | 11 ++++++----- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/gsheet2tbl.R | 2 -- README.md | 33 ++++++++++++++++++++------------- man/gsheet2tbl.Rd | 1 - 6 files changed, 35 insertions(+), 26 deletions(-)
Title: Tool for Diagnosis of Tables Joins and Complementary Join
Features
Description: Tool for diagnosing table joins. It combines the speed of `collapse`
and `data.table`, the flexibility of `dplyr`, and the diagnosis and features
of the `merge` command in `Stata`.
Author: R.Andres Castaneda [aut, cre],
Zander Prinsloo [aut],
Rossana Tatulli [aut]
Maintainer: R.Andres Castaneda <acastanedaa@worldbank.org>
Diff between joyn versions 0.2.3 dated 2024-08-20 and 0.2.4 dated 2024-12-13
DESCRIPTION | 6 MD5 | 50 +- NEWS.md | 8 R/freq_table.R | 37 +- R/is_id.R | 50 +- R/joyn-merge.R | 53 ++ R/possible_ids.R | 477 ++++++++++++++++++++------ R/zzz.R | 11 README.md | 25 - inst/doc/adv-functionalities.html | 87 ++-- inst/doc/aux-functions.R | 6 inst/doc/aux-functions.Rmd | 6 inst/doc/aux-functions.html | 126 +++--- inst/doc/dplyr-joins.html | 31 - inst/doc/main-functionalities.R | 2 inst/doc/messages.R | 4 inst/doc/messages.html | 31 - man/create_ids.Rd |only man/freq_table.Rd | 4 man/is_id.Rd | 7 man/merge.Rd | 2 man/possible_ids.Rd | 56 ++- man/store_checked_ids.Rd |only tests/testthat/test-freq_table.R | 4 tests/testthat/test-is_id.R | 9 tests/testthat/test-possible_ids.R | 669 ++++++++++++++++++++++++++++++++++++- vignettes/aux-functions.Rmd | 6 27 files changed, 1409 insertions(+), 358 deletions(-)
Title: Correcting Misclassified Mediation Analysis
Description: Use three methods to estimate parameters from a mediation analysis
with a binary misclassified mediator. These methods correct for the problem
of "label switching" using Youden's J criteria. A detailed description of the
analysis methods is available in Webb and Wells (2024), "Effect estimation in
the presence of a misclassified binary mediator" <doi:10.48550/arXiv.2407.06970>.
Author: Kimberly Webb [aut, cre]
Maintainer: Kimberly Webb <kah343@cornell.edu>
Diff between COMMA versions 1.1.0 dated 2024-10-30 and 1.1.1 dated 2024-12-13
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- R/COMMA_EM_bootstrap_SE.R | 17 ++++++++++++++--- R/COMMA_OLS_bootstrap_SE.R | 16 ++++++++++++++-- R/COMMA_PVW_bootstrap_SE.R | 16 ++++++++++++++-- man/COMMA_EM_bootstrap_SE.Rd | 10 +++++++--- man/COMMA_OLS_bootstrap_SE.Rd | 9 +++++++-- man/COMMA_PVW_bootstrap_SE.Rd | 9 +++++++-- 8 files changed, 73 insertions(+), 24 deletions(-)
Title: Markdown-Based Surveys Using 'Quarto' and 'shiny'
Description: Generate surveys using markdown and R code chunks. Surveys are composed of two files: a survey.qmd 'Quarto' file defining the survey content (pages, questions, etc), and an app.R file defining a 'shiny' app with global settings (libraries, database configuration, etc.) and server configuration options (e.g., conditional skipping / display, etc.). Survey data collected from respondents is stored in a 'PostgreSQL' database. Features include controls for conditional skip logic (skip to a page based on an answer to a question), conditional display logic (display a question based on an answer to a question), a customizable progress bar, and a wide variety of question types, including multiple choice (single choice and multiple choices), select, text, numeric, multiple choice buttons, text area, and dates. Because the surveys render into a 'shiny' app, designers can also leverage the reactive capabilities of 'shiny' to create dynamic and interactive surveys.
Author: John Paul Helveston [aut, cre, cph]
,
Pingfan Hu [aut, cph] ,
Bogdan Bunea [aut, cph] ,
Stefan Munnes [ctb]
Maintainer: John Paul Helveston <john.helveston@gmail.com>
Diff between surveydown versions 0.5.1 dated 2024-11-27 and 0.7.2 dated 2024-12-13
DESCRIPTION | 8 MD5 | 28 NAMESPACE | 1 NEWS.md | 32 + R/config.R | 976 +++++++++++++++------------------ R/db.R | 36 - R/server.R | 1322 ++++++++++++++++++++++++++++------------------ R/ui.R | 1055 +++++++++++++++++++++--------------- R/util.R | 337 ++++++----- README.md | 81 -- inst/doc/surveydown.R | 30 - inst/js/cookies.js | 110 ++- inst/lua |only man/sd_question.Rd | 6 man/sd_question_custom.Rd |only man/sd_server.Rd | 9 16 files changed, 2228 insertions(+), 1803 deletions(-)
Title: Lattice Options and Add-Ins
Description: Various plots and functions that make use of the lattice/trellis plotting framework.
The plots, which include loaPlot(), loaMapPlot() and trianglePlot(), and use panelPal(), a function that
extends 'lattice' and 'hexbin' package methods to automate plot subscript and panel-to-panel
and panel-to-key synchronization/management.
Author: Karl Ropkins [aut, cre]
Maintainer: Karl Ropkins <karl.ropkins@gmail.com>
Diff between loa versions 0.2.49.4 dated 2024-10-26 and 0.3.0.1 dated 2024-12-13
DESCRIPTION | 18 - MD5 | 54 ++--- NAMESPACE | 14 - NEWS | 14 + R/add.functions.R | 48 +++-- R/addXYFit.functions.R | 38 ++-- R/key.handlers.R | 341 +++++++++++++++++++------------------ R/lims.and.scales.handlers.R | 10 - R/loaBarPlot.R | 16 - R/loaMapPlot.R | 33 ++- R/loaPlot.R | 24 +- R/loaShapes.R | 2 R/other.panel.functions.R | 10 - R/plot.argument.handlers.R | 37 ++-- R/plot.interactives.R | 17 + R/specialist.panels.01.R | 21 +- R/specialist.panels.02.polar.R | 6 R/specialist.panels.04.R | 6 R/stackPlot.R | 6 R/trianglePlot.R | 13 - R/working.R | 29 ++- inst/CITATION | 12 - man/1.2.loaMapPlot.Rd | 56 +++--- man/4.1.panel.pal.Rd | 2 man/4.5.plot.argument.handlers.Rd | 6 man/5.2.plot.add.functions.Rd | 8 man/5.3.plot.addXYFit.functions.Rd | 8 man/loa-package.Rd | 4 28 files changed, 472 insertions(+), 381 deletions(-)
Title: Bayesian Gaussian Graphical Models
Description: Fit Bayesian Gaussian graphical models. The methods are separated into
two Bayesian approaches for inference: hypothesis testing and estimation. There are
extensions for confirmatory hypothesis testing, comparing Gaussian graphical models,
and node wise predictability. These methods were recently introduced in the Gaussian
graphical model literature, including
Williams (2019) <doi:10.31234/osf.io/x8dpr>,
Williams and Mulder (2019) <doi:10.31234/osf.io/ypxd8>,
Williams, Rast, Pericchi, and Mulder (2019) <doi:10.31234/osf.io/yt386>.
Author: Donald Williams [aut],
Joris Mulder [aut],
Philippe Rast [aut, cre]
Maintainer: Philippe Rast <rast.ph@gmail.com>
Diff between BGGM versions 2.1.3 dated 2024-07-05 and 2.1.4 dated 2024-12-13
BGGM-2.1.3/BGGM/inst/doc/installation.R |only BGGM-2.1.3/BGGM/inst/doc/installation.Rmd |only BGGM-2.1.3/BGGM/inst/doc/installation.html |only BGGM-2.1.3/BGGM/vignettes/installation.Rmd |only BGGM-2.1.4/BGGM/DESCRIPTION | 13 ++++---- BGGM-2.1.4/BGGM/MD5 | 20 +++++-------- BGGM-2.1.4/BGGM/NEWS.md | 6 +++- BGGM-2.1.4/BGGM/R/bggm_missing.R | 43 ----------------------------- BGGM-2.1.4/BGGM/build/partial.rdb |binary BGGM-2.1.4/BGGM/build/vignette.rds |binary BGGM-2.1.4/BGGM/inst/REFERENCES.bib | 12 -------- BGGM-2.1.4/BGGM/inst/doc/ppc_custom.html | 12 ++++---- BGGM-2.1.4/BGGM/man/bggm_missing.Rd | 43 ----------------------------- 13 files changed, 27 insertions(+), 122 deletions(-)
Title: Research Project Directory Generator
Description: Create a project directory structure, along with typical
files for that project. This allows projects to be quickly and easily
created, as well as for them to be standardized. Designed specifically
with scientists in mind (mainly bio-medical researchers, but likely
applies to other fields).
Author: Luke Johnston [aut, cre]
Maintainer: Luke Johnston <lwjohnst@gmail.com>
Diff between prodigenr versions 0.6.2 dated 2022-08-29 and 0.7.0 dated 2024-12-13
prodigenr-0.6.2/prodigenr/inst/rmarkdown |only prodigenr-0.6.2/prodigenr/inst/templates/projects/basic-analysis/doc |only prodigenr-0.6.2/prodigenr/man/figures/rstudio-projects.gif |only prodigenr-0.7.0/prodigenr/DESCRIPTION | 29 - prodigenr-0.7.0/prodigenr/LICENSE | 2 prodigenr-0.7.0/prodigenr/MD5 | 63 +-- prodigenr-0.7.0/prodigenr/NAMESPACE | 1 prodigenr-0.7.0/prodigenr/NEWS.md | 146 ++++--- prodigenr-0.7.0/prodigenr/R/create_doc.R | 72 +-- prodigenr-0.7.0/prodigenr/R/rstudio_setup.R | 7 prodigenr-0.7.0/prodigenr/R/setup_project.R | 114 +++-- prodigenr-0.7.0/prodigenr/R/usethis-utils.R | 22 - prodigenr-0.7.0/prodigenr/R/utils.R | 7 prodigenr-0.7.0/prodigenr/README.md | 47 -- prodigenr-0.7.0/prodigenr/build/vignette.rds |binary prodigenr-0.7.0/prodigenr/inst/WORDLIST |only prodigenr-0.7.0/prodigenr/inst/doc/prodigenr.R | 18 prodigenr-0.7.0/prodigenr/inst/doc/prodigenr.Rmd | 150 ++++--- prodigenr-0.7.0/prodigenr/inst/doc/prodigenr.html | 191 +++++----- prodigenr-0.7.0/prodigenr/inst/templates/documents |only prodigenr-0.7.0/prodigenr/inst/templates/projects/basic-analysis/DESCRIPTION | 4 prodigenr-0.7.0/prodigenr/inst/templates/projects/basic-analysis/R/README.md | 10 prodigenr-0.7.0/prodigenr/inst/templates/projects/basic-analysis/README.md | 20 - prodigenr-0.7.0/prodigenr/inst/templates/projects/basic-analysis/TODO.md | 10 prodigenr-0.7.0/prodigenr/inst/templates/projects/basic-analysis/docs |only prodigenr-0.7.0/prodigenr/inst/templates/projects/basic-analysis/gitignore |only prodigenr-0.7.0/prodigenr/inst/templates/projects/basic-analysis/template-Rproj | 4 prodigenr-0.7.0/prodigenr/man/create_doc.Rd | 19 prodigenr-0.7.0/prodigenr/man/setup_project.Rd | 3 prodigenr-0.7.0/prodigenr/man/setup_with_git.Rd | 2 prodigenr-0.7.0/prodigenr/tests/testthat/test-files.R | 22 - prodigenr-0.7.0/prodigenr/tests/testthat/test-projects.R | 56 +- prodigenr-0.7.0/prodigenr/vignettes/prodigenr.Rmd | 150 ++++--- 33 files changed, 622 insertions(+), 547 deletions(-)
Title: Converting 'LaTeX' 'R Journal' Articles into 'RJ-web-articles'
Description: Articles in the 'R Journal' were first authored in 'LaTeX', which performs
admirably for 'PDF' files but is less than ideal for modern online interfaces.
The 'texor' package does all the transitional chores and conversions necessary
to move to the online versions.
Author: Abhishek Ulayil [aut, cre, cph]
,
Heather Turner [ctb] ,
Christophe Dervieux [ctb] ,
Mitchell O'Hara-Wild [ctb] ,
Dianne Cook [ctb] ,
Yinxiang Huang [ctb]
Maintainer: Abhishek Ulayil <perricoq@outlook.com>
Diff between texor versions 1.5.0 dated 2024-10-15 and 1.5.3 dated 2024-12-13
DESCRIPTION | 6 - MD5 | 21 ++--- NEWS.md | 8 ++ R/rnw-tools.R | 11 ++ build/vignette.rds |binary inst/doc/How-texor-convert-Sweave-to-R-Markdown.html | 4 - inst/doc/environment-handling.html | 71 +++++++++---------- inst/doc/introduction-to-texor.html | 1 inst/fig_code_chunk.lua | 2 tests/testthat/test-code-tools.R |only tests/testthat/test-file-tools.R | 9 ++ tests/testthat/test-rnw-tools.R | 2 12 files changed, 84 insertions(+), 51 deletions(-)
Title: Fuzzy Similarity in Species Distributions
Description: Functions to compute fuzzy versions of species occurrence patterns based on presence-absence data (including inverse distance interpolation, trend surface analysis, and prevalence-independent favourability obtained from probability of presence), as well as pair-wise fuzzy similarity (based on fuzzy logic versions of commonly used similarity indices) among those occurrence patterns. Includes also functions for model consensus and comparison (overlap and fuzzy similarity, fuzzy loss, fuzzy gain), and for data preparation, such as obtaining unique abbreviations of species names, defining the background region, cleaning and gridding (thinning) point occurrence data onto raster maps, selecting among (pseudo)absences to address survey bias, converting species lists (long format) to presence-absence tables (wide format), transposing part of a data frame, selecting relevant variables for models, assessing the false discovery rate, or analysing and dealing with multicollinearity. Initially desc [...truncated...]
Author: A. Marcia Barbosa [aut],
Alba Estrada [ctb],
Paul Melloy [ctb],
Jose Carlos Guerrero [fnd],
A. Marcia Barbosa [cre]
Maintainer: A. Marcia Barbosa <ana.marcia.barbosa@gmail.com>
Diff between fuzzySim versions 4.26 dated 2024-10-30 and 4.29 dated 2024-12-13
DESCRIPTION | 14 ++++++++---- MD5 | 20 +++++++++--------- NEWS | 47 ++++++++++++++++++++++++++++++++++++++---- R/cleanCoords.R | 19 ++++++++++++----- R/fuzzyOverlay.R | 8 +++++-- R/getRegion.R | 12 ++++++++-- man/cleanCoords.Rd | 7 +++--- man/fuzzySim-package.Rd | 4 +-- man/getRegion.Rd | 53 +++++++++++++++++++++++++++++++++++++++++++++--- man/gridRecords.Rd | 8 +++---- man/selectAbsences.Rd | 25 ++++++++++++++++------ 11 files changed, 168 insertions(+), 49 deletions(-)
Title: Fast Access to Large ASCII Files
Description: Methods for fast access to large ASCII files. Currently the
following file formats are supported: comma separated format (CSV) and fixed
width format. It is assumed that the files are too large to fit into memory,
although the package can also be used to efficiently access files that do
fit into memory. Methods are provided to access and process files blockwise.
Furthermore, an opened file can be accessed as one would an ordinary
data.frame. The LaF vignette gives an overview of the functionality
provided.
Author: Jan van der Laan [aut, cre]
Maintainer: Jan van der Laan <r@eoos.dds.nl>
Diff between LaF versions 0.8.4 dated 2020-03-23 and 0.8.6 dated 2024-12-13
DESCRIPTION | 21 ++++++++++++++------- MD5 | 28 +++++++++++++++------------- NEWS | 13 +++++++++++++ R/meta.R | 2 +- R/open.R | 8 +++++++- R/read_dm_blaise.R | 5 +++-- build/vignette.rds |binary inst/doc/LaF-benchmark.pdf |binary inst/doc/LaF-manual.pdf |binary man/laf_open.Rd | 2 +- man/laf_open_csv.Rd | 6 ++++++ man/laf_open_fwf.Rd | 2 +- man/read_dm_blaise.Rd | 4 +++- src/csvreader.cpp | 31 ++++++++++++++++++++++++++----- tests/testthat/test_blaise.R |only tests/testthat/test_firstlineseparator.R |only 16 files changed, 90 insertions(+), 32 deletions(-)
Title: 'ggplot2' Pattern Geoms
Description: Provides 'ggplot2' geoms filled with various patterns. Includes a patterned version of every 'ggplot2' geom that has a region that can be filled with a pattern. Provides a suite of 'ggplot2' aesthetics and scales for controlling pattern appearances. Supports over a dozen builtin patterns (every pattern implemented by 'gridpattern') as well as allowing custom user-defined patterns.
Author: Mike FC [aut],
Trevor L. Davis [aut, cre] ,
ggplot2 authors [aut]
Maintainer: Trevor L. Davis <trevor.l.davis@gmail.com>
Diff between ggpattern versions 1.1.1 dated 2024-06-04 and 1.1.3 dated 2024-12-13
DESCRIPTION | 8 ++-- MD5 | 62 +++++++++++++++++----------------- NEWS.md | 7 +++ R/geom-.R | 2 - R/scale-pattern-alpha.R | 6 +-- R/scale-pattern-brewer.R | 4 +- R/scale-pattern-linetype.R | 2 - R/scale-pattern-viridis.R | 6 +-- README.md | 36 ++++++++++--------- build/vignette.rds |binary inst/doc/developing-patterns.R | 2 - inst/doc/developing-patterns.Rmd | 2 - inst/doc/developing-patterns.html | 4 +- inst/doc/patterns-noise.R | 16 ++++---- inst/doc/patterns-noise.Rmd | 16 ++++---- inst/doc/patterns-noise.html | 16 ++++---- inst/doc/patterns-points.R | 14 +++---- inst/doc/patterns-points.Rmd | 14 +++---- inst/doc/patterns-points.html | 14 +++---- inst/doc/patterns-stripes.R | 18 ++++----- inst/doc/patterns-stripes.Rmd | 18 ++++----- inst/doc/patterns-stripes.html | 18 ++++----- man/draw_key_polygon_pattern.Rd | 2 - man/ggpattern.Rd | 2 - man/scale_pattern_alpha_continuous.Rd | 6 +-- man/scale_pattern_colour_brewer.Rd | 4 +- man/scale_pattern_colour_viridis_d.Rd | 6 +-- man/scale_pattern_linetype.Rd | 2 - vignettes/developing-patterns.Rmd | 2 - vignettes/patterns-noise.Rmd | 16 ++++---- vignettes/patterns-points.Rmd | 14 +++---- vignettes/patterns-stripes.Rmd | 18 ++++----- 32 files changed, 183 insertions(+), 174 deletions(-)
Title: Libraries, Data Dictionaries, and a Data Step for R
Description: Contains a set of functions to create data libraries,
generate data dictionaries, and simulate a data step.
The libname() function will load a directory of data into
a library in one line of code. The dictionary() function
will generate data dictionaries for individual
data frames or an entire library. And the datestep() function
will perform row-by-row data processing.
Author: David Bosak [aut, cre],
Brian Varney [ctb],
Archytas Clinical Solutions [cph]
Maintainer: David Bosak <dbosak01@gmail.com>
Diff between libr versions 1.3.7 dated 2024-11-06 and 1.3.8 dated 2024-12-13
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NAMESPACE | 1 - NEWS.md | 3 +++ R/libname.R | 1 - 5 files changed, 12 insertions(+), 11 deletions(-)
Title: Simulation of Daily and Monthly Time Series
Description: Flexible simulation of time series using time series
components, including seasonal, calendar and outlier effects. Main
algorithm described in Ollech, D. (2021) <doi:10.1515/jtse-2020-0028>.
Author: Daniel Ollech [aut, cre]
Maintainer: Daniel Ollech <daniel.ollech@bundesbank.de>
Diff between tssim versions 0.1.7 dated 2021-06-25 and 0.2.7 dated 2024-12-13
DESCRIPTION | 23 +++++++---------- MD5 | 28 +++++++++++++-------- NAMESPACE | 4 +++ NEWS.md | 14 ++++++++++ R/sim_daily.R | 63 ++++++++++++++++++++++++++++++++++-------------- R/sim_daily_hs.R |only R/sim_daily_mstl.R |only R/sim_monthly.R | 8 +++--- R/sim_monthly_hs.R |only R/sim_monthly_mstl.R |only R/sim_sfac.R | 59 +++++++++++++++++++++++++++++--------------- build/partial.rdb |binary man/sim_daily.Rd | 29 ++++++++++++---------- man/sim_daily_hs.Rd |only man/sim_daily_mstl.Rd |only man/sim_monthly.Rd | 14 +++++++--- man/sim_monthly_hs.Rd |only man/sim_monthly_mstl.Rd |only man/sim_sfac.Rd | 21 +++++++++------- 19 files changed, 173 insertions(+), 90 deletions(-)
Title: Analytics & Machine Learning Sidekick
Description: Auxiliary package for better/faster analytics, visualization, data mining, and machine
learning tasks. With a wide variety of family functions, like Machine Learning, Data Wrangling,
Marketing Mix Modeling (Robyn), Exploratory, API, and Scrapper, it helps the analyst or
data scientist to get quick and robust results, without the need of repetitive coding or
advanced R programming skills.
Author: Bernardo Lares [aut, cre]
Maintainer: Bernardo Lares <laresbernardo@gmail.com>
Diff between lares versions 5.2.9 dated 2024-09-12 and 5.2.10 dated 2024-12-13
lares-5.2.10/lares/DESCRIPTION | 11 +- lares-5.2.10/lares/MD5 | 30 ++++--- lares-5.2.10/lares/NAMESPACE | 7 + lares-5.2.10/lares/R/checks.R | 23 ++++- lares-5.2.10/lares/R/crossbrand.R |only lares-5.2.10/lares/R/crossbrand2.R |only lares-5.2.10/lares/R/family.R |only lares-5.2.10/lares/R/lares.R | 7 + lares-5.2.10/lares/R/lasso.R | 1 lares-5.2.10/lares/R/model_functions.R | 1 lares-5.2.10/lares/R/model_predict.R | 2 lares-5.2.10/lares/R/onehotencoding.R | 131 +++++++++++++++---------------- lares-5.2.10/lares/R/wrangling.R | 31 ++++--- lares-5.2.10/lares/man/checks.Rd | 56 +++++++++++++ lares-5.2.10/lares/man/format_string.Rd | 3 lares-5.2.10/lares/man/holidays.Rd | 5 - lares-5.2.10/lares/man/robyn_crossmmm.Rd |only lares-5.2.10/lares/man/seq_surnames.Rd |only lares-5.2.9/lares/man/is_url.Rd |only 19 files changed, 205 insertions(+), 103 deletions(-)
Title: Random Fields on Metric Graphs
Description: Facilitates creation and manipulation of metric graphs, such as street or river networks. Further facilitates operations and visualizations of data on metric graphs, and the creation of a large class of random fields and stochastic partial differential equations on such spaces. These random fields can be used for simulation, prediction and inference. In particular, linear mixed effects models including random field components can be fitted to data based on computationally efficient sparse matrix representations. Interfaces to the R packages 'INLA' and 'inlabru' are also provided, which facilitate working with Bayesian statistical models on metric graphs. The main references for the methods are Bolin, Simas and Wallin (2024) <doi:10.3150/23-BEJ1647>, Bolin, Kovacs, Kumar and Simas (2023) <doi:10.1090/mcom/3929> and Bolin, Simas and Wallin (2023) <doi:10.48550/arXiv.2304.03190> and <doi:10.48550/arXiv.2304.10372>.
Author: David Bolin [cre, aut],
Alexandre Simas [aut],
Jonas Wallin [aut]
Maintainer: David Bolin <davidbolin@gmail.com>
Diff between MetricGraph versions 1.3.0 dated 2024-02-27 and 1.4.0 dated 2024-12-13
MetricGraph-1.3.0/MetricGraph/tests/testthat/test_cgeneric.R |only MetricGraph-1.4.0/MetricGraph/DESCRIPTION | 17 MetricGraph-1.4.0/MetricGraph/MD5 | 91 MetricGraph-1.4.0/MetricGraph/NAMESPACE | 12 MetricGraph-1.4.0/MetricGraph/NEWS.md | 27 MetricGraph-1.4.0/MetricGraph/R/MetricGraph-package.R | 18 MetricGraph-1.4.0/MetricGraph/R/RcppExports.R | 12 MetricGraph-1.4.0/MetricGraph/R/data.R | 32 MetricGraph-1.4.0/MetricGraph/R/graph_inference.R | 13 MetricGraph-1.4.0/MetricGraph/R/graph_likelihoods.R | 13 MetricGraph-1.4.0/MetricGraph/R/graph_lme.R | 22 MetricGraph-1.4.0/MetricGraph/R/graph_spde.R | 877 +- MetricGraph-1.4.0/MetricGraph/R/metric_graph.R | 4385 +++++++--- MetricGraph-1.4.0/MetricGraph/R/spde_covariance.R | 188 MetricGraph-1.4.0/MetricGraph/R/spde_posteriors.R | 215 MetricGraph-1.4.0/MetricGraph/R/spde_precision.R | 183 MetricGraph-1.4.0/MetricGraph/R/spde_sampling.R | 69 MetricGraph-1.4.0/MetricGraph/R/util.R | 444 - MetricGraph-1.4.0/MetricGraph/build/vignette.rds |binary MetricGraph-1.4.0/MetricGraph/data/pems.rda |binary MetricGraph-1.4.0/MetricGraph/data/pems_repl.rda |only MetricGraph-1.4.0/MetricGraph/inst/CITATION | 10 MetricGraph-1.4.0/MetricGraph/inst/doc/MetricGraph_pkg.Rmd | 27 MetricGraph-1.4.0/MetricGraph/inst/doc/MetricGraph_pkg.html | 36 MetricGraph-1.4.0/MetricGraph/man/graph_components.Rd | 6 MetricGraph-1.4.0/MetricGraph/man/graph_data_spde.Rd | 13 MetricGraph-1.4.0/MetricGraph/man/graph_lme.Rd | 8 MetricGraph-1.4.0/MetricGraph/man/graph_spde.Rd | 33 MetricGraph-1.4.0/MetricGraph/man/graph_spde_basis.Rd | 2 MetricGraph-1.4.0/MetricGraph/man/graph_starting_values.Rd | 8 MetricGraph-1.4.0/MetricGraph/man/metric_graph.Rd | 712 + MetricGraph-1.4.0/MetricGraph/man/pems.Rd | 11 MetricGraph-1.4.0/MetricGraph/man/pems_repl.Rd |only MetricGraph-1.4.0/MetricGraph/man/plot.graph_bru_proc_pred.Rd |only MetricGraph-1.4.0/MetricGraph/man/predict.inla_metric_graph_spde.Rd | 20 MetricGraph-1.4.0/MetricGraph/man/process_rspde_predictions.Rd |only MetricGraph-1.4.0/MetricGraph/man/sample_spde.Rd | 3 MetricGraph-1.4.0/MetricGraph/man/spde_covariance.Rd | 4 MetricGraph-1.4.0/MetricGraph/man/spde_variance.Rd |only MetricGraph-1.4.0/MetricGraph/man/summary.metric_graph.Rd | 12 MetricGraph-1.4.0/MetricGraph/src/CB.cpp | 195 MetricGraph-1.4.0/MetricGraph/src/RcppExports.cpp | 48 MetricGraph-1.4.0/MetricGraph/src/aux_functions.cpp | 114 MetricGraph-1.4.0/MetricGraph/tests/testthat/test.alpha2.R | 10 MetricGraph-1.4.0/MetricGraph/tests/testthat/test.graph.R | 4 MetricGraph-1.4.0/MetricGraph/tests/testthat/test.variance.R | 5 MetricGraph-1.4.0/MetricGraph/tests/testthat/test_directional.R |only MetricGraph-1.4.0/MetricGraph/tests/testthat/test_exp.R | 2 MetricGraph-1.4.0/MetricGraph/tests/testthat/test_isoExp.R | 4 MetricGraph-1.4.0/MetricGraph/vignettes/MetricGraph_pkg.Rmd | 27 50 files changed, 6045 insertions(+), 1887 deletions(-)
Title: Sign-Simplicity-Regression-Solver
Description: Implementation of the SSR-Algorithm. The Sign-Simplicity-Regression model is a nonparametric statistical model which is based on residual signs and simplicity assumptions on the regression function. Goal is to calculate the most parsimonious regression function satisfying the statistical adequacy requirements. Theory and functions are specified in Metzner (2020, ISBN: 979-8-68239-420-3, "Trendbasierte Prognostik") and Metzner (2021, ISBN: 979-8-59347-027-0, "Adäquates Maschinelles Lernen").
Author: Lars Metzner [aut, cre]
Maintainer: Lars Metzner <lars.metzner@ppi.de>
Diff between sisireg versions 1.1.1 dated 2023-09-20 and 1.1.2 dated 2024-12-13
DESCRIPTION | 8 - MD5 | 20 ++-- NAMESPACE | 1 R/ssr.R | 12 ++ R/ssr3d.R | 40 +++++---- R/ssrMLP.R | 220 ++++++++++++++++++++++++++++++++++++++++++++-------- R/ssrnd.R | 9 +- man/onnx_load.Rd | 56 +++++++------ man/onnx_save.Rd | 46 +++++----- man/ssrmlp_train.Rd | 8 + src/ssrnd.c | 2 11 files changed, 303 insertions(+), 119 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-10-28 0.3.1
2024-09-12 0.2.14
Title: Bias Diagnostic for Linear Mixed Models
Description: Provides a function to perform bias diagnostics on linear mixed models fitted with lmer() from the 'lme4' package. Implements permutation tests for assessing the bias of fixed effects, as described in Karl and Zimmerman (2021) <doi:10.1016/j.jspi.2020.06.004>. Karl and Zimmerman (2020) <doi:10.17632/tmynggddfm.1> provide R code for implementing the test using 'mvglmmRank' output. Development of this package was assisted by 'GPT o1-preview' for code structure and documentation.
Author: Andrew T. Karl [cre, aut]
Maintainer: Andrew T. Karl <akarl@asu.edu>
Diff between mixedbiastest versions 0.2.1 dated 2024-12-05 and 0.3.0 dated 2024-12-13
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ R/list_fixed.R | 4 ++-- R/mixedbiastest.R | 4 ++-- R/plot.R | 30 ++++++++++++------------------ man/list_fixed_effects.Rd | 4 ++-- man/mixedbiastest.Rd | 4 ++-- 7 files changed, 31 insertions(+), 37 deletions(-)
Title: An 'Armadillo' Interface
Description: Provides function declarations and inline function definitions that
facilitate communication between R and the 'Armadillo' 'C++' library for
linear algebra and scientific computing. This implementation is detailed
in Vargas Sepulveda and Schneider Malamud (2024)
<doi:10.48550/arXiv.2408.11074>.
Author: Mauricio Vargas Sepulveda [aut, cre]
,
Jonathan Schneider Malamud [ctb],
Conrad Sanderson [aut] )
Maintainer: Mauricio Vargas Sepulveda <m.sepulveda@mail.utoronto.ca>
Diff between cpp11armadillo versions 0.3.3 dated 2024-09-02 and 0.4.0 dated 2024-12-13
cpp11armadillo-0.3.3/cpp11armadillo/inst/extdata/src/Makevars |only cpp11armadillo-0.3.3/cpp11armadillo/inst/include/armadillo/r_messages.hpp |only cpp11armadillo-0.4.0/cpp11armadillo/DESCRIPTION | 8 cpp11armadillo-0.4.0/cpp11armadillo/MD5 | 218 +- cpp11armadillo-0.4.0/cpp11armadillo/NEWS.md | 18 cpp11armadillo-0.4.0/cpp11armadillo/R/version.R | 2 cpp11armadillo-0.4.0/cpp11armadillo/README.md | 34 cpp11armadillo-0.4.0/cpp11armadillo/build/vignette.rds |binary cpp11armadillo-0.4.0/cpp11armadillo/configure |only cpp11armadillo-0.4.0/cpp11armadillo/configure.win |only cpp11armadillo-0.4.0/cpp11armadillo/inst/doc/usage.Rmd | 55 cpp11armadillo-0.4.0/cpp11armadillo/inst/doc/usage.html | 88 cpp11armadillo-0.4.0/cpp11armadillo/inst/extdata/README | 17 cpp11armadillo-0.4.0/cpp11armadillo/inst/extdata/cleanup |only cpp11armadillo-0.4.0/cpp11armadillo/inst/extdata/configure |only cpp11armadillo-0.4.0/cpp11armadillo/inst/extdata/src/Makevars.in |only cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo.hpp | 2 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/Base_bones.hpp | 12 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/Col_bones.hpp | 2 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/Col_meat.hpp | 6 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/CubeToMatOp_bones.hpp | 5 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/Cube_bones.hpp | 15 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/Cube_meat.hpp | 38 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/Gen_bones.hpp | 5 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/Glue_bones.hpp | 3 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/Glue_meat.hpp | 8 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/MapMat_meat.hpp | 65 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/Mat_bones.hpp | 18 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/Mat_meat.hpp | 14 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/Op_bones.hpp | 3 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/Op_meat.hpp | 8 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/Proxy.hpp | 16 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/Row_bones.hpp | 2 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/Row_meat.hpp | 6 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/SpBase_bones.hpp | 12 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/SpMat_meat.hpp | 25 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/SpToDGlue_bones.hpp | 5 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/SpToDOp_bones.hpp | 5 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/arma_forward.hpp | 3 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/arma_rng.hpp | 56 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/arma_rng_cxx03.hpp | 4 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/arma_version.hpp | 4 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/auxlib_bones.hpp | 46 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/auxlib_meat.hpp | 896 +++++++++- cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/compiler_check.hpp | 8 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/compiler_setup.hpp | 9 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/config.hpp | 33 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/config.hpp.cmake | 25 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/debug.hpp | 20 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/def_lapack.hpp | 198 ++ cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/diagview_bones.hpp | 3 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/diagview_meat.hpp | 48 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/eGlue_bones.hpp | 3 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/eGlue_meat.hpp | 6 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/eOp_bones.hpp | 3 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/eOp_meat.hpp | 8 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/fft_engine_fftw3.hpp | 44 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/fn_accu.hpp | 8 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/fn_misc.hpp | 57 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/fn_powext.hpp | 25 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/glue_solve_bones.hpp | 5 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/glue_solve_meat.hpp | 124 + cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/glue_times_meat.hpp | 29 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/gmm_diag_meat.hpp | 4 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/gmm_full_meat.hpp | 4 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/memory.hpp | 52 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/mp_misc.hpp | 8 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/mtGlue_bones.hpp | 3 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/mtGlue_meat.hpp | 8 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/mtOp_bones.hpp | 3 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/mtOp_meat.hpp | 8 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/mul_gemv.hpp | 4 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/mul_herk.hpp | 4 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/mul_syrk.hpp | 4 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/op_cond_meat.hpp | 12 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/op_dot_meat.hpp | 12 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/op_expmat_meat.hpp | 18 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/op_inv_gen_meat.hpp | 64 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/op_inv_spd_meat.hpp | 8 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/op_log_det_meat.hpp | 2 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/op_logmat_meat.hpp | 6 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/op_max_meat.hpp | 44 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/op_min_meat.hpp | 44 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/op_norm_meat.hpp | 8 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/op_pinv_meat.hpp | 9 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/op_powmat_meat.hpp | 42 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/op_rank_meat.hpp | 9 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/op_rcond_meat.hpp | 30 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/op_sqrtmat_meat.hpp | 6 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/operator_minus.hpp | 56 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/operator_plus.hpp | 56 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/sp_auxlib_meat.hpp | 12 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/subview_bones.hpp | 7 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/subview_cube_each_bones.hpp | 2 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/subview_each_bones.hpp | 2 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/subview_each_meat.hpp | 4 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/subview_elem1_bones.hpp | 3 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/subview_elem1_meat.hpp | 56 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/subview_elem2_bones.hpp | 3 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/subview_elem2_meat.hpp | 9 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/subview_meat.hpp | 8 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/sym_helper.hpp | 189 +- cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/traits.hpp | 10 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/translate_lapack.hpp | 208 ++ cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/typedef_elem.hpp | 5 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/armadillo/unwrap.hpp | 21 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/cpp11armadillo.hpp | 108 + cpp11armadillo-0.4.0/cpp11armadillo/inst/include/r_messages.hpp |only cpp11armadillo-0.4.0/cpp11armadillo/inst/include/wrappers/matrices.hpp | 13 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/wrappers/sparse_matrices.hpp | 34 cpp11armadillo-0.4.0/cpp11armadillo/inst/include/wrappers/vectors.hpp | 40 cpp11armadillo-0.4.0/cpp11armadillo/man/figures/logo.svg | 851 +++------ cpp11armadillo-0.4.0/cpp11armadillo/tests/testthat/test-version.R | 2 cpp11armadillo-0.4.0/cpp11armadillo/vignettes/usage.Rmd | 55 114 files changed, 2890 insertions(+), 1660 deletions(-)
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