Title: Statistical Inference of Vine Copulas
Description: Provides tools for the statistical analysis of regular vine copula
models, see Aas et al. (2009) <doi:10.1016/j.insmatheco.2007.02.001> and
Dissman et al. (2013) <doi:10.1016/j.csda.2012.08.010>.
The package includes tools for parameter estimation, model selection,
simulation, goodness-of-fit tests, and visualization. Tools for estimation,
selection and exploratory data analysis of bivariate copula models are also
provided.
Author: Thomas Nagler [aut, cre],
Ulf Schepsmeier [aut],
Jakob Stoeber [aut],
Eike Christian Brechmann [aut],
Benedikt Graeler [aut],
Tobias Erhardt [aut],
Carlos Almeida [ctb],
Aleksey Min [ctb, ths],
Claudia Czado [ctb, ths],
Mathias Hofmann [ctb],
Matthia [...truncated...]
Maintainer: Thomas Nagler <mail@tnagler.com>
Diff between VineCopula versions 2.5.1 dated 2024-08-19 and 2.6.0 dated 2024-12-16
DESCRIPTION | 6 +-- MD5 | 15 ++++--- NAMESPACE | 1 NEWS.md | 12 ++++++ R/RVineLogLik.R | 102 ++++++++++++++++++++++++++++++++++++++++++++++++++++++ README.md | 4 +- build/partial.rdb |binary man/RVineCDF.Rd |only src/logderiv.c | 5 +- 9 files changed, 131 insertions(+), 14 deletions(-)
Title: An Alternative Advanced Normalization Tools ('ANTs')
Description: Provides portable access from 'R' to biomedical image processing toolbox
'ANTs' by Avants et al. (2009) <doi:10.54294/uvnhin> via seamless
integration with the 'Python' implementation 'ANTsPy'. Allows biomedical
images to be processed in 'Python' and analyzed in 'R', and vice versa
via shared memory. See 'citation("rpyANTs")' for more reference information.
Author: Zhengjia Wang [aut, cre]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between rpyANTs versions 0.0.3 dated 2023-12-21 and 0.0.4 dated 2024-12-16
DESCRIPTION | 8 MD5 | 34 ++- NAMESPACE | 2 NEWS.md | 19 + R/aaa.R | 5 R/correction.R |only R/templates.R | 52 +++++ README.md | 14 - inst/rpyants/debug.py |only inst/rpyants/rpyants/registration/__init__.py | 1 inst/rpyants/rpyants/registration/halpern.py | 10 - inst/rpyants/rpyants/registration/normalization.py |only inst/rpyants/rpyants/registration/yael.py |only inst/rpyants/rpyants/utils/internals.py |only inst/rpyants/rpyants/utils/paths.py | 142 ++++++++++++++ inst/rpyants/rpyants/utils/transforms.py |only man/correct_intensity.Rd |only man/ensure_template.Rd |only man/figures/README-load-image-into-r-1.png |binary man/install_ants.Rd | 5 tests/testthat.R | 4 tests/testthat/test-transform.R | 201 +++++++++++++++++++++ 22 files changed, 459 insertions(+), 38 deletions(-)
Title: Fetch Economic and Financial Time Series Data from Public
Sources
Description: Download economic and financial time series from public sources,
including the St Louis Fed's FRED system, Yahoo Finance, the US Bureau of Labor Statistics,
the US Energy Information Administration, the World Bank, Eurostat, the European Central Bank,
the Bank of England, the UK's Office of National Statistics, Deutsche Bundesbank, and INSEE.
Author: Abiel Reinhart [aut, cre]
Maintainer: Abiel Reinhart <abielr@gmail.com>
Diff between pdfetch versions 0.3.2 dated 2024-09-29 and 0.3.3 dated 2024-12-16
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS | 4 ++++ R/pdfetch.R | 15 ++++++++------- 4 files changed, 19 insertions(+), 14 deletions(-)
Title: Interface to the 'PubChem' Database for Chemical Data Retrieval
Description: Provides an interface to the 'PubChem' database via the PUG REST <https://pubchem.ncbi.nlm.nih.gov/docs/pug-rest> and
PUG View <https://pubchem.ncbi.nlm.nih.gov/docs/pug-view> services. This package allows users to automatically
access chemical and biological data from 'PubChem', including compounds, substances, assays, and various other data types.
Functions are available to retrieve data in different formats, perform searches, and access detailed annotations.
Author: Selcuk Korkmaz [aut, cre] ,
Bilge Eren Yamasan [aut] ,
Dincer Goksuluk [aut]
Maintainer: Selcuk Korkmaz <selcukorkmaz@gmail.com>
Diff between PubChemR versions 2.1.1 dated 2024-10-01 and 2.1.3 dated 2024-12-16
DESCRIPTION | 6 MD5 | 12 R/get_pug_rest.R | 36 inst/doc/Enhancing_Chemical_Data_Access_with_PubChemR.html | 25 inst/doc/Exploring_Chemical_Data_with_PubChemR.html | 109 inst/doc/Working_with_PubChemR_to_Access_Chemical_Data.html | 1591 ++++++------ tests/testthat/test-get_substances.R | 1 7 files changed, 903 insertions(+), 877 deletions(-)
Title: High Performance Remote File System, Database and 'Geospatial'
Access Using 'duckdb'
Description: Provides friendly wrappers for creating 'duckdb'-backed connections
to tabular datasets ('csv', parquet, etc) on local or remote file systems.
This mimics the behaviour of "open_dataset" in the 'arrow' package,
but in addition to 'S3' file system also generalizes to any list of 'http' URLs.
Author: Carl Boettiger [aut, cre] ,
Michael D. Sumner [ctb]
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between duckdbfs versions 0.0.8 dated 2024-12-09 and 0.0.9 dated 2024-12-16
DESCRIPTION | 6 +-- MD5 | 11 +++-- NEWS.md | 4 ++ R/duckdb_config.R | 65 ++++++++++++++++++++++++----------- README.md | 4 +- man/load_spatial.Rd | 5 ++ tests/testthat/test-load_extension.R |only 7 files changed, 65 insertions(+), 30 deletions(-)
Title: Tools for Reading SDMX Data and Metadata
Description: Set of classes and methods to read data and metadata documents
exchanged through the Statistical Data and Metadata Exchange (SDMX) framework,
currently focusing on the SDMX XML standard format (SDMX-ML).
Author: Emmanuel Blondel [aut, cre] ,
Matthieu Stigler [ctb] ,
Eric Persson [ctb]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between rsdmx versions 0.6-3 dated 2023-08-28 and 0.6-4 dated 2024-12-16
rsdmx-0.6-3/rsdmx/man/getNamespaces.Rd |only rsdmx-0.6-3/rsdmx/man/getStructureType-methods.Rd |only rsdmx-0.6-3/rsdmx/man/namespaces.SDMX.Rd |only rsdmx-0.6-3/rsdmx/man/setDSD.Rd |only rsdmx-0.6-4/rsdmx/DESCRIPTION | 10 rsdmx-0.6-4/rsdmx/MD5 | 235 +++---- rsdmx-0.6-4/rsdmx/NAMESPACE | 208 ++---- rsdmx-0.6-4/rsdmx/R/SDMX-methods.R | 26 rsdmx-0.6-4/rsdmx/R/SDMXAgency-methods.R | 3 rsdmx-0.6-4/rsdmx/R/SDMXAgencyScheme-methods.R | 3 rsdmx-0.6-4/rsdmx/R/SDMXAttribute-methods.R | 3 rsdmx-0.6-4/rsdmx/R/SDMXCode-methods.R | 3 rsdmx-0.6-4/rsdmx/R/SDMXCodelist-methods.R | 3 rsdmx-0.6-4/rsdmx/R/SDMXCodelists-methods.R | 4 rsdmx-0.6-4/rsdmx/R/SDMXCompactData-methods.R | 5 rsdmx-0.6-4/rsdmx/R/SDMXComponents-methods.R | 4 rsdmx-0.6-4/rsdmx/R/SDMXConcept-methods.R | 3 rsdmx-0.6-4/rsdmx/R/SDMXConceptScheme-methods.R | 3 rsdmx-0.6-4/rsdmx/R/SDMXConcepts-methods.R | 8 rsdmx-0.6-4/rsdmx/R/SDMXCrossSectionalData-methods.R | 5 rsdmx-0.6-4/rsdmx/R/SDMXData-methods.R | 19 rsdmx-0.6-4/rsdmx/R/SDMXDataFlow-methods.R | 3 rsdmx-0.6-4/rsdmx/R/SDMXDataFlows-methods.R | 4 rsdmx-0.6-4/rsdmx/R/SDMXDataStructure-methods.R | 3 rsdmx-0.6-4/rsdmx/R/SDMXDataStructureDefinition-methods.R | 3 rsdmx-0.6-4/rsdmx/R/SDMXDataStructures-methods.R | 4 rsdmx-0.6-4/rsdmx/R/SDMXDimension-methods.R | 3 rsdmx-0.6-4/rsdmx/R/SDMXDotStatRequestBuilder-methods.R | 7 rsdmx-0.6-4/rsdmx/R/SDMXFooter-methods.R | 3 rsdmx-0.6-4/rsdmx/R/SDMXFooterMessage-methods.R | 3 rsdmx-0.6-4/rsdmx/R/SDMXGenericData-methods.R | 4 rsdmx-0.6-4/rsdmx/R/SDMXHeader-methods.R | 3 rsdmx-0.6-4/rsdmx/R/SDMXMessageGroup-methods.R | 4 rsdmx-0.6-4/rsdmx/R/SDMXOrganisation-methods.R | 3 rsdmx-0.6-4/rsdmx/R/SDMXOrganisationSchemes-methods.R | 4 rsdmx-0.6-4/rsdmx/R/SDMXPrimaryMeasure-methods.R | 3 rsdmx-0.6-4/rsdmx/R/SDMXREST20RequestBuilder-methods.R | 3 rsdmx-0.6-4/rsdmx/R/SDMXREST21RequestBuilder-methods.R | 3 rsdmx-0.6-4/rsdmx/R/SDMXRequestBuilder-methods.R | 3 rsdmx-0.6-4/rsdmx/R/SDMXRequestParams-methods.R | 3 rsdmx-0.6-4/rsdmx/R/SDMXSchema-methods.R | 1 rsdmx-0.6-4/rsdmx/R/SDMXServiceProvider-methods.R | 89 +- rsdmx-0.6-4/rsdmx/R/SDMXServiceProviders-methods.R | 3 rsdmx-0.6-4/rsdmx/R/SDMXStructureSpecificData-methods.R | 4 rsdmx-0.6-4/rsdmx/R/SDMXStructureSpecificTimeSeriesData-methods.R | 4 rsdmx-0.6-4/rsdmx/R/SDMXStructureType-methods.R | 14 rsdmx-0.6-4/rsdmx/R/SDMXTimeDimension-methods.R | 2 rsdmx-0.6-4/rsdmx/R/SDMXType-methods.R | 2 rsdmx-0.6-4/rsdmx/R/SDMXUtilityData-methods.R | 3 rsdmx-0.6-4/rsdmx/R/readSDMX.R | 4 rsdmx-0.6-4/rsdmx/R/rsdmx.R | 10 rsdmx-0.6-4/rsdmx/R/rsdmx_logger.R | 6 rsdmx-0.6-4/rsdmx/R/saveSDMX.R | 5 rsdmx-0.6-4/rsdmx/README.md | 43 - rsdmx-0.6-4/rsdmx/build/vignette.rds |binary rsdmx-0.6-4/rsdmx/inst/doc/quickstart.R | 58 - rsdmx-0.6-4/rsdmx/inst/doc/quickstart.Rmd | 38 - rsdmx-0.6-4/rsdmx/inst/doc/quickstart.html | 319 ++++++--- rsdmx-0.6-4/rsdmx/man/SDMX-methods.Rd |only rsdmx-0.6-4/rsdmx/man/SDMX.Rd | 106 +-- rsdmx-0.6-4/rsdmx/man/SDMXAgency.Rd | 56 - rsdmx-0.6-4/rsdmx/man/SDMXAgencyScheme.Rd | 114 +-- rsdmx-0.6-4/rsdmx/man/SDMXAttribute.Rd | 160 ++-- rsdmx-0.6-4/rsdmx/man/SDMXCode.Rd | 108 +-- rsdmx-0.6-4/rsdmx/man/SDMXCodelist.Rd | 124 +-- rsdmx-0.6-4/rsdmx/man/SDMXCodelists.Rd | 82 +- rsdmx-0.6-4/rsdmx/man/SDMXCompactData.Rd | 58 - rsdmx-0.6-4/rsdmx/man/SDMXComponents.Rd | 96 +- rsdmx-0.6-4/rsdmx/man/SDMXConcept.Rd | 126 +-- rsdmx-0.6-4/rsdmx/man/SDMXConceptScheme.Rd | 128 +-- rsdmx-0.6-4/rsdmx/man/SDMXConcepts.Rd | 92 +- rsdmx-0.6-4/rsdmx/man/SDMXCrossSectionalData.Rd | 58 - rsdmx-0.6-4/rsdmx/man/SDMXData-method.Rd |only rsdmx-0.6-4/rsdmx/man/SDMXData.Rd | 82 +- rsdmx-0.6-4/rsdmx/man/SDMXDataFlow.Rd | 130 ++-- rsdmx-0.6-4/rsdmx/man/SDMXDataFlows.Rd | 86 +- rsdmx-0.6-4/rsdmx/man/SDMXDataStructure.Rd | 128 +-- rsdmx-0.6-4/rsdmx/man/SDMXDataStructureDefinition.Rd | 104 +-- rsdmx-0.6-4/rsdmx/man/SDMXDataStructures.Rd | 86 +- rsdmx-0.6-4/rsdmx/man/SDMXDimension.Rd | 152 ++-- rsdmx-0.6-4/rsdmx/man/SDMXDotStatRequestBuilder.Rd | 136 ++-- rsdmx-0.6-4/rsdmx/man/SDMXFooter.Rd | 100 +-- rsdmx-0.6-4/rsdmx/man/SDMXFooterMessage.Rd | 104 +-- rsdmx-0.6-4/rsdmx/man/SDMXGenericData.Rd | 70 +- rsdmx-0.6-4/rsdmx/man/SDMXHeader.Rd | 146 ++-- rsdmx-0.6-4/rsdmx/man/SDMXItemScheme.Rd | 40 - rsdmx-0.6-4/rsdmx/man/SDMXMessageGroup.Rd | 70 +- rsdmx-0.6-4/rsdmx/man/SDMXOrganisation.Rd | 98 +-- rsdmx-0.6-4/rsdmx/man/SDMXOrganisationScheme.Rd | 42 - rsdmx-0.6-4/rsdmx/man/SDMXOrganisationSchemes.Rd | 82 +- rsdmx-0.6-4/rsdmx/man/SDMXPrimaryMeasure.Rd | 110 +-- rsdmx-0.6-4/rsdmx/man/SDMXREST20RequestBuilder.Rd | 147 ++-- rsdmx-0.6-4/rsdmx/man/SDMXREST21RequestBuilder.Rd | 149 ++-- rsdmx-0.6-4/rsdmx/man/SDMXRequestBuilder.Rd | 237 +++---- rsdmx-0.6-4/rsdmx/man/SDMXRequestParams.Rd | 189 ++--- rsdmx-0.6-4/rsdmx/man/SDMXSchema.Rd | 80 +- rsdmx-0.6-4/rsdmx/man/SDMXServiceProvider.Rd | 128 +-- rsdmx-0.6-4/rsdmx/man/SDMXServiceProviders.Rd | 76 +- rsdmx-0.6-4/rsdmx/man/SDMXStructureSpecificData.Rd | 70 +- rsdmx-0.6-4/rsdmx/man/SDMXStructureSpecificTimeSeriesData.Rd | 70 +- rsdmx-0.6-4/rsdmx/man/SDMXStructureType-methods.Rd |only rsdmx-0.6-4/rsdmx/man/SDMXStructureType.Rd | 78 +- rsdmx-0.6-4/rsdmx/man/SDMXTimeDimension.Rd | 126 +-- rsdmx-0.6-4/rsdmx/man/SDMXType.Rd | 96 +- rsdmx-0.6-4/rsdmx/man/SDMXUtilityData.Rd | 70 +- rsdmx-0.6-4/rsdmx/man/addSDMXServiceProvider.Rd | 80 +- rsdmx-0.6-4/rsdmx/man/findNamespace.Rd | 68 +- rsdmx-0.6-4/rsdmx/man/findSDMXServiceProvider.Rd | 66 +- rsdmx-0.6-4/rsdmx/man/getRegistryInterfaceResult.Rd | 58 - rsdmx-0.6-4/rsdmx/man/getSDMXServiceProviders.Rd | 50 - rsdmx-0.6-4/rsdmx/man/getSoapRequestResult.Rd | 58 - rsdmx-0.6-4/rsdmx/man/isRegistryInterfaceEnvelope.Rd | 62 - rsdmx-0.6-4/rsdmx/man/isSoapRequestEnvelope.Rd | 62 - rsdmx-0.6-4/rsdmx/man/readSDMX.Rd | 324 +++++----- rsdmx-0.6-4/rsdmx/man/rsdmx.Rd | 43 - rsdmx-0.6-4/rsdmx/man/rsdmxLogger.Rd | 5 rsdmx-0.6-4/rsdmx/man/saveSDMX.Rd | 55 - rsdmx-0.6-4/rsdmx/man/setSDMXServiceProviders.Rd | 56 - rsdmx-0.6-4/rsdmx/tests/testthat/test_Concepts.R | 6 rsdmx-0.6-4/rsdmx/tests/testthat/test_Main.R | 28 rsdmx-0.6-4/rsdmx/tests/testthat/test_Main_Helpers.R | 89 +- rsdmx-0.6-4/rsdmx/vignettes/quickstart.Rmd | 38 - 122 files changed, 3538 insertions(+), 3416 deletions(-)
Title: Fast Machine Learning Model Training and Evaluation
Description: Streamlines the training, evaluation, and comparison of multiple machine learning models with minimal code by providing
comprehensive data preprocessing and support for a wide range of algorithms with hyperparameter tuning.
It offers performance metrics and visualization tools to facilitate efficient and effective machine learning workflows.
Author: Selcuk Korkmaz [aut, cre] ,
Dincer Goksuluk [aut]
Maintainer: Selcuk Korkmaz <selcukorkmaz@gmail.com>
Diff between fastml versions 0.2.0 dated 2024-11-30 and 0.3.0 dated 2024-12-16
fastml-0.2.0/fastml/man/define_bagging_spec.Rd |only fastml-0.2.0/fastml/man/define_bayes_glm_spec.Rd |only fastml-0.2.0/fastml/man/define_c5_0_spec.Rd |only fastml-0.2.0/fastml/man/define_decision_tree_spec.Rd |only fastml-0.2.0/fastml/man/define_deep_learning_spec.Rd |only fastml-0.2.0/fastml/man/define_elastic_net_spec.Rd |only fastml-0.2.0/fastml/man/define_knn_spec.Rd |only fastml-0.2.0/fastml/man/define_lasso_regression_spec.Rd |only fastml-0.2.0/fastml/man/define_lda_spec.Rd |only fastml-0.2.0/fastml/man/define_lightgbm_spec.Rd |only fastml-0.2.0/fastml/man/define_linear_regression_spec.Rd |only fastml-0.2.0/fastml/man/define_logistic_regression_spec.Rd |only fastml-0.2.0/fastml/man/define_naive_bayes_spec.Rd |only fastml-0.2.0/fastml/man/define_neural_network_spec.Rd |only fastml-0.2.0/fastml/man/define_penalized_logistic_regression_spec.Rd |only fastml-0.2.0/fastml/man/define_pls_spec.Rd |only fastml-0.2.0/fastml/man/define_qda_spec.Rd |only fastml-0.2.0/fastml/man/define_random_forest_spec.Rd |only fastml-0.2.0/fastml/man/define_ranger_spec.Rd |only fastml-0.2.0/fastml/man/define_ridge_regression_spec.Rd |only fastml-0.2.0/fastml/man/define_svm_linear_spec.Rd |only fastml-0.2.0/fastml/man/define_svm_radial_spec.Rd |only fastml-0.2.0/fastml/man/define_xgboost_spec.Rd |only fastml-0.3.0/fastml/DESCRIPTION | 16 fastml-0.3.0/fastml/MD5 | 48 fastml-0.3.0/fastml/NAMESPACE | 41 fastml-0.3.0/fastml/R/evaluate_models.R | 15 fastml-0.3.0/fastml/R/explain.fastml_model.R |only fastml-0.3.0/fastml/R/fastml.R | 317 +--- fastml-0.3.0/fastml/R/models.R |only fastml-0.3.0/fastml/R/plot.fastml_model.R | 14 fastml-0.3.0/fastml/R/summary.fastml_model.R | 393 ++++- fastml-0.3.0/fastml/R/train_models.R | 756 +--------- fastml-0.3.0/fastml/man/evaluate_models.Rd | 6 fastml-0.3.0/fastml/man/explain.Rd |only fastml-0.3.0/fastml/man/fastml.Rd | 52 fastml-0.3.0/fastml/man/summary.fastml_model.Rd | 39 fastml-0.3.0/fastml/man/train_models.Rd | 16 38 files changed, 715 insertions(+), 998 deletions(-)
Title: Extended Two-Way Fixed Effects
Description: Convenience functions for implementing extended two-way
fixed effect regressions a la Wooldridge (2021, 2023)
<doi:10.2139/ssrn.3906345>, <doi:10.1093/ectj/utad016>.
Author: Grant McDermott [aut, cre] ,
Frederic Kluser [ctb]
Maintainer: Grant McDermott <gmcd@amazon.com>
Diff between etwfe versions 0.4.0 dated 2024-02-26 and 0.5.0 dated 2024-12-16
DESCRIPTION | 19 MD5 | 32 NAMESPACE | 6 NEWS.md | 33 R/emfx.R | 205 + R/etwfe.R | 457 ++- R/plot.R |only README.md | 78 build/vignette.rds |binary inst/doc/etwfe.R | 180 - inst/doc/etwfe.Rmd | 254 +- inst/doc/etwfe.html | 5392 ++++++++++++++++------------------------------ inst/tinytest/test_emfx.R | 22 inst/tinytest/test_xvar.R | 3 man/emfx.Rd | 150 - man/etwfe.Rd | 76 man/plot.emfx.Rd |only vignettes/etwfe.Rmd | 254 +- 18 files changed, 3027 insertions(+), 4134 deletions(-)
Title: Interpreted String Literals
Description: An implementation of interpreted string literals. Based on the
'glue' package by Hester & Bryan (2024) <doi:10.32614/CRAN.package.glue> but
with a focus on efficiency and simplicity at a cost of flexibility.
Author: Tim Taylor [aut, cre] ,
Jim Hester [aut] ,
Jennifer Bryan [aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>
Diff between super versions 0.0.3 dated 2024-11-22 and 0.0.4 dated 2024-12-16
DESCRIPTION | 6 +++--- MD5 | 15 ++++++++------- NEWS.md |only build/partial.rdb |binary build/vignette.rds |binary inst/doc/super.Rmd | 2 +- inst/doc/super.html | 28 ++++++++++++++-------------- man/super-package.Rd | 1 + vignettes/super.Rmd | 2 +- 9 files changed, 28 insertions(+), 26 deletions(-)
Title: Functions to Analyze Single System Data
Description: Functions to visually and statistically analyze single system data.
Author: Charles Auerbach [aut, cre],
Wendy Zeitlin [aut]
Maintainer: Charles Auerbach <auerbach@yu.edu>
Diff between SSDforR versions 1.5.36 dated 2024-12-03 and 1.5.37 dated 2024-12-16
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/CDCabove.R | 4 ++-- R/CDCbelow.R | 4 ++-- R/RobustCDCabove.R | 4 ++-- R/RobustCDCbelow.R | 4 ++-- 6 files changed, 17 insertions(+), 17 deletions(-)
Title: Utilities for the Forest Research Institute of the State
Baden-Wuerttemberg
Description: Miscellaneous utilities, tools and helper
functions for finding and searching files on disk, searching for and
removing R objects from the workspace.
Does not import or depend on any third party package, but on core R
only (i.e. it may depend on packages with priority 'base').
Author: Andreas Dominik Cullmann [aut, cre]
Maintainer: Andreas Dominik Cullmann <fvafrcu@mailbox.org>
Diff between fritools versions 4.3.0 dated 2024-01-26 and 4.4.0 dated 2024-12-16
DESCRIPTION | 8 - MD5 | 125 +++++++++++++++------------ NAMESPACE | 6 + NEWS.md | 11 ++ R/char2factor.R |only R/get_session_string.R |only R/pause.R |only R/r.R | 2 R/relative_difference.R | 29 ++++-- R/rename_package.R | 1 R/rownames2col.R |only R/runsed.R |only R/sloboba.R | 8 - R/string2words.R |only R/test_helpers.R | 2 README.md | 11 ++ build/vignette.rds |binary inst/NEWS.rd | 13 ++ inst/doc/Not_an_Introduction_to_fritools.pdf |binary inst/tinytest/test_char2factor.R |only inst/tinytest/test_relative_difference.R |only inst/tinytest/test_rownames2col.R |only inst/tinytest/test_runsed.R |only inst/tinytest/test_string2words.R |only man/bulk_read_csv.Rd | 4 man/bulk_write_csv.Rd | 4 man/char2factor.Rd |only man/check_ascii_file.Rd | 4 man/clipboard_path.Rd | 1 man/compare_vectors.Rd | 1 man/delete_trailing_blank_lines.Rd | 1 man/delete_trailing_whitespace.Rd | 1 man/develop_test.Rd | 1 man/file_copy.Rd | 1 man/file_modified_last.Rd | 2 man/file_save.Rd | 1 man/find_files.Rd | 2 man/fritools-package.Rd | 12 ++ man/fromto.Rd | 1 man/get_lines_between_tags.Rd | 1 man/get_mtime.Rd | 1 man/get_package_version.Rd | 4 man/get_session_string.Rd |only man/get_unique_string.Rd | 1 man/golden_ratio.Rd | 4 man/grep_file.Rd | 2 man/is_difftime_less.Rd | 4 man/is_files_current.Rd | 1 man/is_path.Rd | 1 man/is_r_package_installed.Rd | 4 man/is_valid_primary_key.Rd | 4 man/is_version_sufficient.Rd | 4 man/load_internal_functions.Rd | 3 man/missing_docs.Rd | 1 man/paths.Rd | 1 man/pause.Rd |only man/r_cmd_install.Rd | 4 man/relative_difference.Rd | 7 + man/rename_package.Rd | 8 + man/rownames2col.Rd |only man/runsed.Rd |only man/search_files.Rd | 2 man/search_rows.Rd | 1 man/sloboda.Rd | 2 man/split_code_file.Rd | 1 man/str2num.Rd | 4 man/string2words.Rd |only man/strip_off_attributes.Rd | 4 man/summary.filesearch.Rd | 1 man/tapply.Rd | 4 man/throw.Rd | 4 man/touch.Rd | 1 72 files changed, 249 insertions(+), 82 deletions(-)
Title: Signal and Image Processing Toolbox for Analyzing Intracranial
Electroencephalography Data
Description: Implemented fast and memory-efficient Notch-filter,
Welch-periodogram, discrete wavelet spectrogram for minutes of
high-resolution signals, fast 3D convolution, image registration,
3D mesh manipulation; providing fundamental toolbox for intracranial
Electroencephalography (iEEG) pipelines.
Documentation and examples about 'RAVE' project are provided at
<https://rave.wiki>, and the paper by John F. Magnotti,
Zhengjia Wang, Michael S. Beauchamp (2020)
<doi:10.1016/j.neuroimage.2020.117341>; see 'citation("ravetools")' for
details.
Author: Zhengjia Wang [aut, cre],
John Magnotti [aut],
Michael Beauchamp [aut],
Trustees of the University of Pennsylvania [cph] ,
Karim Rahim [cph, ctb] ,
Thomas Possidente [cph, ctb] ,
Michael Prerau [cph, ctb] ,
Marcus Geelnard [ctb, cph] ,
Stefan Schlage [...truncated...]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between ravetools versions 0.1.9 dated 2024-11-08 and 0.2.0 dated 2024-12-16
DESCRIPTION | 6 - MD5 | 15 ++-- NAMESPACE | 1 NEWS.md | 4 + R/RcppExports.R | 4 + R/vcg.R | 89 ++++++++++++++++++++++++++++ man/vcg_raycaster.Rd |only src/RcppExports.cpp | 18 +++++ src/vcgCommon.cpp | 160 +++++++++++++++++++++++++++++++++++++++++++++++++++ 9 files changed, 287 insertions(+), 10 deletions(-)
Title: Tidy Plots for Scientific Papers
Description: The goal of 'tidyplots' is to streamline the creation of publication-ready plots for scientific papers. It allows to gradually add, remove and adjust plot components using a consistent and intuitive syntax.
Author: Jan Broder Engler [aut, cre, cph]
Maintainer: Jan Broder Engler <broder.engler@gmail.com>
Diff between tidyplots versions 0.1.2 dated 2024-11-08 and 0.2.0 dated 2024-12-16
DESCRIPTION | 12 MD5 | 139 ++++--- NAMESPACE | 2 NEWS.md | 19 R/add-general.R | 24 - R/add-heatmap.R | 2 R/add-misc.R | 12 R/add-points.R | 7 R/add-proportional.R | 8 R/adjust.R | 60 ++- R/helpers.R | 21 - R/labels.R | 16 R/plot.R | 15 R/remove.R | 4 R/themes.R | 12 R/tidycolor.R | 10 README.md | 4 inst/CITATION |only inst/doc/tidyplots.R | 3 inst/doc/tidyplots.Rmd | 13 inst/doc/tidyplots.html | 15 man/add_areastack_absolute.Rd | 2 man/add_barstack_absolute.Rd | 2 man/add_boxplot.Rd | 4 man/add_count_bar.Rd | 4 man/add_curve_fit.Rd | 12 man/add_data_points.Rd | 4 man/add_heatmap.Rd | 2 man/add_line.Rd | 4 man/add_mean_bar.Rd | 4 man/add_median_bar.Rd | 4 man/add_reference_lines.Rd | 4 man/add_sem_errorbar.Rd | 4 man/add_sem_ribbon.Rd | 14 man/add_sum_bar.Rd | 4 man/add_violin.Rd | 4 man/adjust_legend_title.Rd | 20 - man/adjust_theme_details.Rd |only man/adjust_title.Rd | 50 ++ man/adjust_x_axis.Rd | 4 man/as_tidyplot.Rd | 6 man/colors_discrete_friendly.Rd | 11 man/common_arguments.Rd | 4 man/figures/logo.svg | 194 +++------- man/flip_plot.Rd | 2 man/remove_x_axis.Rd | 4 man/remove_y_axis.Rd | 4 man/rename_x_axis_labels.Rd | 4 man/reorder_x_axis_labels.Rd | 4 man/reverse_x_axis_labels.Rd | 4 man/save_plot.Rd | 6 man/sort_x_axis_labels.Rd | 4 man/tidyplot.Rd | 6 tests/testthat/_snaps/add-general/add-error-bars-xy.svg | 128 +++--- tests/testthat/_snaps/add-general/add-error-bars-yx.svg | 128 +++--- tests/testthat/_snaps/add-general/add-error-ribbon-xy.svg | 78 ++-- tests/testthat/_snaps/add-general/add-error-ribbon-yx.svg | 78 ++-- tests/testthat/_snaps/add-general/add-grouped-error-bar-xy.svg | 128 +++--- tests/testthat/_snaps/add-general/add-grouped-error-ribbon-xy.svg | 96 ++-- tests/testthat/_snaps/add-general/no-discrete-axis-dodge-width-0-8.svg |only tests/testthat/_snaps/add-general/no-discrete-axis-dodge-width-0.svg |only tests/testthat/_snaps/add-general/no-discrete-axis-no-provided-dodge-width.svg |only tests/testthat/_snaps/add-general/no-discrete-axis-override.svg |only tests/testthat/_snaps/add-general/no-discrete-axis.svg |only tests/testthat/_snaps/add-general/one-discrete-axis-dodge-width-0-8.svg |only tests/testthat/_snaps/add-general/one-discrete-axis-dodge-width-0.svg |only tests/testthat/_snaps/add-general/one-discrete-axis-no-provided-dodge-width.svg |only tests/testthat/_snaps/add-general/one-discrete-axis-override.svg |only tests/testthat/_snaps/add-general/one-discrete-axis.svg |only tests/testthat/_snaps/adjust/adjust-axes-limits-3.svg | 8 tests/testthat/_snaps/adjust/caption-font.svg |only tests/testthat/_snaps/adjust/legend-title-font.svg |only tests/testthat/_snaps/adjust/plot-title-font.svg |only tests/testthat/_snaps/adjust/x-axis-title-font.svg |only tests/testthat/_snaps/adjust/y-axis-title-font.svg |only tests/testthat/test-add-general.R | 73 +++ tests/testthat/test-adjust.R | 29 + tests/testthat/test-helpers.R | 2 vignettes/tidyplots.Rmd | 13 79 files changed, 911 insertions(+), 647 deletions(-)
Title: Nonlinear Nonparametric Statistics
Description: Nonlinear nonparametric statistics using partial moments. Partial moments are the elements of variance and asymptotically approximate the area of f(x). These robust statistics provide the basis for nonlinear analysis while retaining linear equivalences. NNS offers: Numerical integration, Numerical differentiation, Clustering, Correlation, Dependence, Causal analysis, ANOVA, Regression, Classification, Seasonality, Autoregressive modeling, Normalization, Stochastic dominance and Advanced Monte Carlo sampling. All routines based on: Viole, F. and Nawrocki, D. (2013), Nonlinear Nonparametric Statistics: Using Partial Moments (ISBN: 1490523995).
Author: Fred Viole [aut, cre],
Roberto Spadim [ctb]
Maintainer: Fred Viole <ovvo.financial.systems@gmail.com>
Diff between NNS versions 10.9.4 dated 2024-12-02 and 10.9.5 dated 2024-12-16
DESCRIPTION | 8 - MD5 | 22 ++--- R/NNS_MC.R | 4 R/NNS_meboot.R | 5 - R/Partial_Moments.R | 3 README.md | 9 -- inst/doc/NNSvignette_Partial_Moments.R | 12 ++ inst/doc/NNSvignette_Partial_Moments.Rmd | 12 ++ inst/doc/NNSvignette_Partial_Moments.html | 132 +++++++++++++++--------------- man/NNS.MC.Rd | 3 man/NNS.meboot.Rd | 3 vignettes/NNSvignette_Partial_Moments.Rmd | 12 ++ 12 files changed, 127 insertions(+), 98 deletions(-)
Title: (Restricted) [external] Multidimensional Unfolding
Description: Functions for performing (external) multidimensional unfolding.
Restrictions (fixed coordinates or model restrictions) are available for both row and column coordinates in all combinations.
Author: Frank Busing [aut, cre],
Juan Claramunt Gonzalez [aut]
Maintainer: Frank Busing <busing@fsw.leidenuniv.nl>
Diff between fmdu versions 0.1.1 dated 2024-03-07 and 0.2.1 dated 2024-12-16
fmdu-0.1.1/fmdu/src/nnls.c |only fmdu-0.1.1/fmdu/src/uhelp.c |only fmdu-0.1.1/fmdu/src/uhelp.h |only fmdu-0.2.1/fmdu/DESCRIPTION | 8 fmdu-0.2.1/fmdu/MD5 | 50 fmdu-0.2.1/fmdu/NAMESPACE | 2 fmdu-0.2.1/fmdu/R/fastmdu.R | 73 fmdu-0.2.1/fmdu/R/ultrafastmdu.R |only fmdu-0.2.1/fmdu/man/fastmdu.Rd | 9 fmdu-0.2.1/fmdu/man/ultrafastmdu.Rd |only fmdu-0.2.1/fmdu/src/bigmdu.c |only fmdu-0.2.1/fmdu/src/colresmdu.c | 8 fmdu-0.2.1/fmdu/src/colresmduneg.c | 10 fmdu-0.2.1/fmdu/src/colreswgtmdu.c | 12 fmdu-0.2.1/fmdu/src/colreswgtmduneg.c | 12 fmdu-0.2.1/fmdu/src/external.c | 34 fmdu-0.2.1/fmdu/src/flib.c | 4687 ++++++++++++++++++++++++---------- fmdu-0.2.1/fmdu/src/flib.h | 154 - fmdu-0.2.1/fmdu/src/fmdu.h | 11 fmdu-0.2.1/fmdu/src/init.c | 19 fmdu-0.2.1/fmdu/src/pencolresmdu.c |only fmdu-0.2.1/fmdu/src/penrowresmdu.c |only fmdu-0.2.1/fmdu/src/resmdu.c | 18 fmdu-0.2.1/fmdu/src/resmduneg.c | 20 fmdu-0.2.1/fmdu/src/reswgtmdu.c | 20 fmdu-0.2.1/fmdu/src/reswgtmduneg.c | 20 fmdu-0.2.1/fmdu/src/rowresmdu.c | 8 fmdu-0.2.1/fmdu/src/rowresmduneg.c | 12 fmdu-0.2.1/fmdu/src/rowreswgtmdu.c | 12 fmdu-0.2.1/fmdu/src/rowreswgtmduneg.c | 12 30 files changed, 3670 insertions(+), 1541 deletions(-)
Title: Simple Imputation
Description: Easy to use interfaces to a number of imputation methods
that fit in the not-a-pipe operator of the 'magrittr' package.
Author: Mark van der Loo [aut, cre]
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between simputation versions 0.2.8 dated 2022-06-16 and 0.2.9 dated 2024-12-16
simputation-0.2.8/simputation/man/simputation.Rd |only simputation-0.2.8/simputation/src |only simputation-0.2.9/simputation/DESCRIPTION | 10 simputation-0.2.9/simputation/MD5 | 41 simputation-0.2.9/simputation/NAMESPACE | 1 simputation-0.2.9/simputation/NEWS | 13 simputation-0.2.9/simputation/R/hotdeck.R | 141 ++- simputation-0.2.9/simputation/R/linearmodels.R | 71 - simputation-0.2.9/simputation/R/simputation-pkg.R | 5 simputation-0.2.9/simputation/R/treemodels.R | 99 +- simputation-0.2.9/simputation/R/utils.R | 36 simputation-0.2.9/simputation/build/vignette.rds |binary simputation-0.2.9/simputation/inst/doc/intro.R | 54 - simputation-0.2.9/simputation/inst/doc/intro.html | 411 ++++++---- simputation-0.2.9/simputation/inst/tinytest/test_gh_issue_20.R |only simputation-0.2.9/simputation/inst/tinytest/test_groups.R |only simputation-0.2.9/simputation/inst/tinytest/test_hd.R | 166 +++- simputation-0.2.9/simputation/inst/tinytest/test_lm.R | 16 simputation-0.2.9/simputation/inst/tinytest/test_tree.R | 23 simputation-0.2.9/simputation/man/impute_hotdeck.Rd | 8 simputation-0.2.9/simputation/man/impute_lm.Rd | 11 simputation-0.2.9/simputation/man/impute_tree.Rd | 10 simputation-0.2.9/simputation/man/simputation-package.Rd |only 23 files changed, 717 insertions(+), 399 deletions(-)
Title: Species Distribution Model Selection
Description: User-friendly framework that enables the training and the
evaluation of species distribution models (SDMs). The package implements
functions for data driven variable selection and model tuning and includes
numerous utilities to display the results. All the functions used to select
variables or to tune model hyperparameters have an interactive real-time
chart displayed in the 'RStudio' viewer pane during their execution.
Author: Sergio Vignali [aut, cre] ,
Arnaud Barras [aut] ,
Veronika Braunisch [aut] ,
Conservation Biology - University of Bern [fnd]
Maintainer: Sergio Vignali <sdmtune@gmail.com>
Diff between SDMtune versions 1.3.1 dated 2023-07-03 and 1.3.2 dated 2024-12-16
DESCRIPTION | 12 LICENSE.note | 102 MD5 | 522 +-- NAMESPACE | 132 NEWS.md | 249 - R/ANN-class.R | 90 R/BRT-class.R | 102 R/Maxent-class.R | 114 R/Maxnet-class.R | 76 R/RF-class.R | 86 R/RcppExports.R | 14 R/SDMmodel-class.R | 136 R/SDMmodel2MaxEnt.R | 108 R/SDMmodelCV-class.R | 146 R/SDMtune-class.R | 234 - R/SDMtune-package.R | 12 R/SWD-class.R | 142 R/addSamplesToBg.R | 162 - R/aicc.R | 200 - R/auc.R | 292 - R/chart-utils.R | 314 +- R/checkMaxentInstallation.R | 118 R/combineCV.R | 138 R/confMatrix.R | 222 - R/convertFolds.R | 96 R/corVar.R | 174 - R/doJk.R | 464 +-- R/getTunableArgs.R | 120 R/gridSearch.R | 406 +- R/maxentTh.R | 108 R/maxentVarImp.R | 176 - R/mergeSWD.R | 240 - R/modelReport.R | 852 ++--- R/optimizeModel.R | 940 +++--- R/plotCor.R | 188 - R/plotJk.R | 258 - R/plotPA.R | 234 - R/plotPred.R | 158 - R/plotROC.R | 198 - R/plotResponse.R | 506 +-- R/plotVarImp.R | 148 R/predict-ANN.R | 66 R/predict-BRT.R | 74 R/predict-Maxent.R | 142 R/predict-Maxnet.R | 70 R/predict-RF.R | 66 R/predict-SDMmodel.R | 374 +- R/predict-SDMmodelCV.R | 506 +-- R/prepareSWD.R | 240 - R/randomFolds.R | 144 R/randomSearch.R | 206 - R/reduceVar.R | 598 +-- R/swd2csv.R | 138 R/thinData.R | 334 +- R/thresholds.R | 270 - R/train.R | 586 +-- R/trainANN.R | 54 R/trainBRT.R | 60 R/trainMaxent.R | 304 - R/trainMaxnet.R | 42 R/trainRF.R | 52 R/trainValTest.R | 380 +- R/tss.R | 260 - R/utils.R | 684 ++-- R/varImp.R | 334 +- R/varSel.R | 636 ++-- R/virtualSp.R | 46 R/zzz.R | 30 README.md | 472 +-- build/vignette.rds |binary inst/CITATION | 40 inst/WORDLIST | 250 - inst/doc/basic-use.R | 622 ++-- inst/doc/basic-use.Rmd | 1246 ++++---- inst/doc/basic-use.html | 2139 +++++++------- inst/doc/hyper-tuning.R | 362 +- inst/doc/hyper-tuning.Rmd | 556 +-- inst/doc/hyper-tuning.html | 1355 ++++---- inst/doc/presence-absence.R | 154 - inst/doc/presence-absence.Rmd | 244 - inst/doc/presence-absence.html | 979 +++--- inst/doc/var-selection.R | 402 +- inst/doc/var-selection.Rmd | 682 ++-- inst/doc/var-selection.html | 1473 ++++----- inst/lib/Chart.min.js | 20 inst/lib/jquery.min.js | 4 inst/lib/style.css | 30 inst/scripts/gridSearch.js | 294 - inst/scripts/optimizeModel.js | 462 +-- inst/scripts/varSelection.js | 400 +- inst/templates/chart_template.html | 48 inst/templates/modelReport.Rmd | 194 - inst/templates/report.css | 114 man/ANN-class.Rd | 76 man/BRT-class.Rd | 82 man/Maxent-class.Rd | 102 man/Maxnet-class.Rd | 64 man/RF-class.Rd | 74 man/SDMmodel-class.Rd | 60 man/SDMmodel2MaxEnt.Rd | 96 man/SDMmodelCV-class.Rd | 70 man/SDMtune-class.Rd | 176 - man/SDMtune-package.Rd | 71 man/SWD-class.Rd | 82 man/addSamplesToBg.Rd | 112 man/aicc.Rd | 126 man/auc.Rd | 202 - man/checkMaxentInstallation.Rd | 64 man/combineCV.Rd | 148 man/confMatrix.Rd | 148 man/corVar.Rd | 142 man/doJk.Rd | 244 - man/getTunableArgs.Rd | 94 man/gridSearch.Rd | 236 - man/maxentTh.Rd | 98 man/maxentVarImp.Rd | 116 man/mergeSWD.Rd | 150 man/modelReport.Rd | 210 - man/optimizeModel.Rd | 260 - man/plotCor.Rd | 126 man/plotJk.Rd | 148 man/plotPA.Rd | 136 man/plotPred.Rd | 86 man/plotROC.Rd | 120 man/plotResponse.Rd | 302 - man/plotVarImp.Rd | 116 man/predict-ANN-method.Rd | 58 man/predict-BRT-method.Rd | 64 man/predict-Maxent-method.Rd | 78 man/predict-Maxnet-method.Rd | 70 man/predict-RF-method.Rd | 58 man/predict-SDMmodel-method.Rd | 256 - man/predict-SDMmodelCV-method.Rd | 308 +- man/prepareSWD.Rd | 128 man/randomFolds.Rd | 106 man/randomSearch.Rd | 218 - man/reduceVar.Rd | 268 - man/swd2csv.Rd | 118 man/thinData.Rd | 200 - man/thresholds.Rd | 154 - man/train.Rd | 532 +-- man/trainValTest.Rd | 150 man/tss.Rd | 202 - man/varImp.Rd | 180 - man/varSel.Rd | 324 +- man/virtualSp.Rd | 70 tests/testthat.R | 8 tests/testthat/_snaps/ANN-class.md | 32 tests/testthat/_snaps/BRT-class.md | 34 tests/testthat/_snaps/Maxent-class.md | 30 tests/testthat/_snaps/Maxnet-class.md | 28 tests/testthat/_snaps/RF-class.md | 30 tests/testthat/_snaps/SDMmodel-class.md | 194 - tests/testthat/_snaps/SDMmodel2MaxEnt.md | 10 tests/testthat/_snaps/SDMmodelCV-class.md | 202 - tests/testthat/_snaps/SDMtune-class.md | 28 tests/testthat/_snaps/SWD-class.md | 104 tests/testthat/_snaps/addSamplesToBg.md | 10 tests/testthat/_snaps/aicc.md | 30 tests/testthat/_snaps/auc.md | 20 tests/testthat/_snaps/checkMaxentInstallation.md | 22 tests/testthat/_snaps/confMatrix.md | 20 tests/testthat/_snaps/convertFolds.md | 8 tests/testthat/_snaps/corVar.md | 10 tests/testthat/_snaps/doJk.md | 20 tests/testthat/_snaps/gridSearch.md | 20 tests/testthat/_snaps/maxentTh.md | 10 tests/testthat/_snaps/maxentVarImp.md | 10 tests/testthat/_snaps/mergeSWD.md | 24 tests/testthat/_snaps/modelReport.md | 146 tests/testthat/_snaps/optimizeModel.md | 74 tests/testthat/_snaps/plotJk.md | 8 tests/testthat/_snaps/plotPA.md | 28 tests/testthat/_snaps/plotPred.md | 20 tests/testthat/_snaps/predict-SDMmodel.md | 58 tests/testthat/_snaps/predict-SDMmodelCV.md | 58 tests/testthat/_snaps/prepareSWD.md | 36 tests/testthat/_snaps/randomFolds.md | 10 tests/testthat/_snaps/reduceVar.md | 28 tests/testthat/_snaps/swd2csv.md | 8 tests/testthat/_snaps/thinData.md | 21 tests/testthat/_snaps/trainMaxent.md | 10 tests/testthat/_snaps/trainValTest.md | 10 tests/testthat/_snaps/tss.md | 20 tests/testthat/_snaps/utils.md | 134 tests/testthat/_snaps/varSel.md | 28 tests/testthat/helper.R | 26 tests/testthat/setup.R | 4 tests/testthat/test-ANN-class.R | 20 tests/testthat/test-BRT-class.R | 22 tests/testthat/test-Maxent-class.R | 8 tests/testthat/test-Maxnet-class.R | 8 tests/testthat/test-RF-class.R | 22 tests/testthat/test-SDMmodel-class.R | 20 tests/testthat/test-SDMmodel2MaxEnt.R | 28 tests/testthat/test-SDMmodelCV-class.R | 20 tests/testthat/test-SDMtune-class.R | 86 tests/testthat/test-SWD-class.R | 16 tests/testthat/test-addSamplesToBg.R | 46 tests/testthat/test-aicc.R | 86 tests/testthat/test-auc.R | 52 tests/testthat/test-chart-utils.R | 136 tests/testthat/test-checkMaxentInstallation.R | 16 tests/testthat/test-clamp.R | 46 tests/testthat/test-combineCV.R | 12 tests/testthat/test-confMatrix.R | 78 tests/testthat/test-convertFolds.R | 254 - tests/testthat/test-corVar.R | 46 tests/testthat/test-doJk.R | 380 +- tests/testthat/test-getTunableArgs.R | 34 tests/testthat/test-gridSearch.R | 200 - tests/testthat/test-maxentTh.R | 16 tests/testthat/test-maxentVarImp.R | 70 tests/testthat/test-mergeSWD.R | 98 tests/testthat/test-modelReport.R | 168 - tests/testthat/test-optimizeModel.R | 310 +- tests/testthat/test-plotCor.R | 40 tests/testthat/test-plotJk.R | 88 tests/testthat/test-plotPA.R | 82 tests/testthat/test-plotPred.R | 54 tests/testthat/test-plotROC.R | 26 tests/testthat/test-plotResponse.R | 148 tests/testthat/test-plotVarImp.R | 28 tests/testthat/test-predct-Maxnet.R | 26 tests/testthat/test-predict-ANN.R | 30 tests/testthat/test-predict-BRT.R | 32 tests/testthat/test-predict-Maxent.R | 214 - tests/testthat/test-predict-RF.R | 28 tests/testthat/test-predict-SDMmodel.R | 196 - tests/testthat/test-predict-SDMmodelCV.R | 336 +- tests/testthat/test-prepareSWD.R | 158 - tests/testthat/test-randomFolds.R | 66 tests/testthat/test-randomSearch.R | 82 tests/testthat/test-reduceVar.R | 158 - tests/testthat/test-swd2csv.R | 66 tests/testthat/test-thinData.R | 182 - tests/testthat/test-thresholds.R | 60 tests/testthat/test-train.R | 100 tests/testthat/test-trainANN.R | 34 tests/testthat/test-trainBRT.R | 38 tests/testthat/test-trainMaxent.R | 308 +- tests/testthat/test-trainMaxnet.R | 28 tests/testthat/test-trainRF.R | 34 tests/testthat/test-trainValTest.R | 310 +- tests/testthat/test-tss.R | 44 tests/testthat/test-utils.R | 476 +-- tests/testthat/test-varImp.R | 84 tests/testthat/test-varSel.R | 154 - vignettes/SDMtune.bib | 366 +- vignettes/articles/evaluate-model.Rmd | 170 - vignettes/articles/evaluation-strategies.Rmd | 430 +- vignettes/articles/make-predictions.Rmd | 358 +- vignettes/articles/prepare-data.Rmd | 448 +- vignettes/articles/train-model.Rmd | 304 - vignettes/articles/train-tune-presence-absence-models.Rmd | 314 +- vignettes/articles/tune-hyperparameters.Rmd | 682 ++-- vignettes/articles/variable-importance.Rmd | 532 +-- vignettes/articles/variable-selection.Rmd | 434 +- vignettes/basic-use.Rmd | 1246 ++++---- vignettes/hyper-tuning.Rmd | 556 +-- vignettes/presence-absence.Rmd | 244 - vignettes/var-selection.Rmd | 682 ++-- 262 files changed, 25232 insertions(+), 25279 deletions(-)
Title: Robust Tuning and Training for Cross-Source Prediction
Description: Provides robust parameter tuning and model training for predictive models applied across data sources where the data distribution varies slightly from source to source. This package implements three primary tuning methods: cross-validation-based internal tuning, external tuning, and the 'RobustTuneC' method. External tuning includes a conservative option where parameters are tuned internally on the training data and validating on an external dataset, providing a slightly pessimistic estimate. It supports Lasso, Ridge, Random Forest, Boosting, and Support Vector Machine classifiers. Currently, only binary classification is supported. The response variable must be the first column of the dataset and a factor with exactly two levels. The tuning methods are based on the paper by Nicole Ellenbach, Anne-Laure Boulesteix, Bernd Bischl, Kristian Unger, and Roman Hornung (2021) "Improved Outcome Prediction Across Data Sources Through Robust Parameter Tuning" <doi:10.1007/s00357-020-09368-z&g [...truncated...]
Author: Yuting He [aut, cre],
Nicole Ellenbach [ctb],
Roman Hornung [ctb]
Maintainer: Yuting He <yutingh19@gmail.com>
Diff between RobustPrediction versions 0.1.4 dated 2024-11-14 and 0.1.7 dated 2024-12-16
DESCRIPTION | 12 +- MD5 | 68 +++++++------- NAMESPACE | 4 R/package.R | 18 ++- R/tuneandtrainExtBoost.R | 158 ++++++++++++++++++++------------ R/tuneandtrainExtLasso.R | 110 +++++++++++++--------- R/tuneandtrainExtRF.R | 151 ++++++++++++++++++++----------- R/tuneandtrainExtRidge.R | 141 +++++++++++++++++++---------- R/tuneandtrainExtSVM.R | 174 ++++++++++++++++++++++-------------- R/tuneandtrainIntBoost.R | 14 -- R/tuneandtrainIntLasso.R | 10 -- R/tuneandtrainIntRF.R | 14 -- R/tuneandtrainIntRidge.R | 16 --- R/tuneandtrainIntSVM.R | 12 -- R/tuneandtrainRobustTuneCBoost.R | 13 +- R/tuneandtrainRobustTuneCLasso.R | 16 +-- R/tuneandtrainRobustTuneCRF.R | 9 - R/tuneandtrainRobustTuneCRidge.R | 13 +- R/tuneandtrainRobustTuneCSVM.R | 10 -- man/RobustPrediction.Rd | 20 ++-- man/tuneandtrainExtBoost.Rd | 72 +++++++++----- man/tuneandtrainExtLasso.Rd | 55 ++++++++--- man/tuneandtrainExtRF.Rd | 47 ++++++--- man/tuneandtrainExtRidge.Rd | 52 +++++++--- man/tuneandtrainExtSVM.Rd | 48 ++++++--- man/tuneandtrainIntBoost.Rd | 5 - man/tuneandtrainIntLasso.Rd | 3 man/tuneandtrainIntRF.Rd | 5 - man/tuneandtrainIntRidge.Rd | 5 - man/tuneandtrainIntSVM.Rd | 4 man/tuneandtrainRobustTuneCBoost.Rd | 4 man/tuneandtrainRobustTuneCLasso.Rd | 4 man/tuneandtrainRobustTuneCRF.Rd | 4 man/tuneandtrainRobustTuneCRidge.Rd | 4 man/tuneandtrainRobustTuneCSVM.Rd | 4 35 files changed, 772 insertions(+), 527 deletions(-)
More information about RobustPrediction at CRAN
Permanent link
Title: Statistical Tools for Quantitative Genetic Analyses
Description: Provides an infrastructure for efficient processing of large-scale genetic and phenotypic data including core functions for: 1) fitting linear mixed models, 2) constructing marker-based genomic relationship matrices, 3) estimating genetic parameters (heritability and correlation), 4) performing genomic prediction and genetic risk profiling, and 5) single or multi-marker association analyses.
Rohde et al. (2019) <doi:10.1101/503631>.
Author: Peter Soerensen [aut, cre],
Palle Duun Rohde [aut],
Izel Fourie Soerensen [aut]
Maintainer: Peter Soerensen <peter.sorensen@r-qgg.org>
Diff between qgg versions 1.1.3 dated 2024-12-11 and 1.1.6 dated 2024-12-16
DESCRIPTION | 8 MD5 | 24 R/RcppExports.R | 40 - R/genomic_bayes.R | 1318 +++++++++++++++++++++++++--------------------------- src/Makevars.win | 2 src/RcppExports.cpp | 144 +---- src/bedfunc.cpp | 118 ++-- src/gbayes.cpp | 640 +++++++++++-------------- src/mtgbayes.cpp | 1 src/qgg_init.c | 74 +- src/solvebed.cpp | 9 src/sparseld.cpp | 2 src/utility.cpp | 8 13 files changed, 1085 insertions(+), 1303 deletions(-)
Title: Continuous Time Mediation
Description: Calculates standard errors and confidence intervals for effects in continuous-time mediation models. This package extends the work of
Deboeck and Preacher (2015) <doi:10.1080/10705511.2014.973960> and
Ryan and Hamaker (2021) <doi:10.1007/s11336-021-09767-0>
by providing methods to generate standard errors and confidence intervals for the total, direct, and indirect effects in these models.
Author: Ivan Jacob Agaloos Pesigan [aut, cre, cph]
Maintainer: Ivan Jacob Agaloos Pesigan <r.jeksterslab@gmail.com>
Diff between cTMed versions 1.0.2 dated 2024-11-26 and 1.0.3 dated 2024-12-16
cTMed-1.0.2/cTMed/R/cTMed-posterior-phi.R |only cTMed-1.0.2/cTMed/man/PosteriorPhi.Rd |only cTMed-1.0.3/cTMed/DESCRIPTION | 8 - cTMed-1.0.3/cTMed/MD5 | 72 +++++++-------- cTMed-1.0.3/cTMed/NAMESPACE | 1 cTMed-1.0.3/cTMed/NEWS.md | 6 + cTMed-1.0.3/cTMed/man/DeltaBeta.Rd | 1 cTMed-1.0.3/cTMed/man/DeltaBetaStd.Rd | 1 cTMed-1.0.3/cTMed/man/DeltaIndirectCentral.Rd | 1 cTMed-1.0.3/cTMed/man/DeltaMed.Rd | 1 cTMed-1.0.3/cTMed/man/DeltaMedStd.Rd | 1 cTMed-1.0.3/cTMed/man/DeltaTotalCentral.Rd | 1 cTMed-1.0.3/cTMed/man/Direct.Rd | 1 cTMed-1.0.3/cTMed/man/DirectStd.Rd | 1 cTMed-1.0.3/cTMed/man/ExpCov.Rd | 1 cTMed-1.0.3/cTMed/man/ExpMean.Rd | 1 cTMed-1.0.3/cTMed/man/Indirect.Rd | 1 cTMed-1.0.3/cTMed/man/IndirectCentral.Rd | 1 cTMed-1.0.3/cTMed/man/IndirectStd.Rd | 1 cTMed-1.0.3/cTMed/man/MCBeta.Rd | 1 cTMed-1.0.3/cTMed/man/MCBetaStd.Rd | 1 cTMed-1.0.3/cTMed/man/MCIndirectCentral.Rd | 1 cTMed-1.0.3/cTMed/man/MCMed.Rd | 1 cTMed-1.0.3/cTMed/man/MCMedStd.Rd | 1 cTMed-1.0.3/cTMed/man/MCPhi.Rd | 1 cTMed-1.0.3/cTMed/man/MCTotalCentral.Rd | 1 cTMed-1.0.3/cTMed/man/Med.Rd | 1 cTMed-1.0.3/cTMed/man/MedStd.Rd | 1 cTMed-1.0.3/cTMed/man/PosteriorBeta.Rd | 1 cTMed-1.0.3/cTMed/man/PosteriorIndirectCentral.Rd | 1 cTMed-1.0.3/cTMed/man/PosteriorMed.Rd | 1 cTMed-1.0.3/cTMed/man/PosteriorTotalCentral.Rd | 1 cTMed-1.0.3/cTMed/man/Total.Rd | 1 cTMed-1.0.3/cTMed/man/TotalCentral.Rd | 1 cTMed-1.0.3/cTMed/man/TotalStd.Rd | 1 cTMed-1.0.3/cTMed/man/Trajectory.Rd | 1 cTMed-1.0.3/cTMed/src/source.cpp | 2 cTMed-1.0.3/cTMed/tests/testthat/test-indirect-central.R | 20 ++++ 38 files changed, 66 insertions(+), 73 deletions(-)
Title: A New Format for Lossless and Lossy Image Compression
Description: Lossless webp images are 26% smaller in size compared to PNG. Lossy
webp images are 25-34% smaller in size compared to JPEG. This package reads
and writes webp images into a 3 (rgb) or 4 (rgba) channel bitmap array using
conventions from the 'jpeg' and 'png' packages.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between webp versions 1.2.1 dated 2024-10-04 and 1.3.0 dated 2024-12-16
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS | 3 +++ src/Makevars.win | 21 ++++++++++++++------- 4 files changed, 23 insertions(+), 13 deletions(-)
Title: Honest Inference in Regression Discontinuity Designs
Description: Honest and nearly-optimal confidence intervals in fuzzy and sharp
regression discontinuity designs and for inference at a point based on local
linear regression. The implementation is based on Armstrong and Kolesár (2018)
<doi:10.3982/ECTA14434>, and Kolesár and Rothe (2018)
<doi:10.1257/aer.20160945>. Supports covariates, clustering, and weighting.
Author: Michal Kolesar [aut, cre, cph]
,
Tim Armstrong [ctb]
Maintainer: Michal Kolesar <kolesarmi@googlemail.com>
Diff between RDHonest versions 1.0.0 dated 2024-03-22 and 1.0.1 dated 2024-12-16
DESCRIPTION | 8 +++---- MD5 | 40 +++++++++++++++++++-------------------- NEWS.md | 8 +++++++ R/NPRfunctions.R | 32 ++++++++++++++++++++++++------- R/RDHonest.R | 15 +++++--------- R/checks.R | 13 ++++++++---- R/documentation.R | 4 +++ build/partial.rdb |binary build/vignette.rds |binary data/rcp.rda |binary inst/WORDLIST | 1 inst/doc/RDHonest.R | 18 +++++++++++++++-- inst/doc/RDHonest.Rmd | 32 +++++++++++++++++++++++++++---- inst/doc/RDHonest.pdf |binary man/RDHonest.Rd | 2 - man/rcp.Rd | 4 +++ tests/spelling.R | 3 +- tests/testthat/test_covariates.R | 27 ++++++++++++++++++++++++++ tests/testthat/test_interface.R | 6 +---- vignettes/RDHonest.Rmd | 32 +++++++++++++++++++++++++++---- vignettes/np-testing-library.bib | 1 21 files changed, 186 insertions(+), 60 deletions(-)
Title: Extensible Style-Sheet Language Transformations
Description: An extension for the 'xml2' package to transform XML documents
by applying an 'xslt' style-sheet.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between xslt versions 1.4.6 dated 2024-10-04 and 1.5.0 dated 2024-12-16
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS | 3 +++ src/Makevars.win | 30 ++++++++++++++++++------------ tools/winlibs.R | 6 ++---- 5 files changed, 30 insertions(+), 23 deletions(-)
Title: A Modern and Easy-to-Use Crypto Library
Description: Bindings to 'libsodium' <https://doc.libsodium.org/>: a modern,
easy-to-use software library for encryption, decryption, signatures, password
hashing and more. Sodium uses curve25519, a state-of-the-art Diffie-Hellman
function by Daniel Bernstein, which has become very popular after it was
discovered that the NSA had backdoored Dual EC DRBG.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between sodium versions 1.3.2 dated 2024-10-04 and 1.4.0 dated 2024-12-16
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS | 3 +++ build/vignette.rds |binary cleanup | 1 + inst/doc/crypto101.html | 14 +++++++------- inst/doc/intro.html | 12 ++++++------ src/Makevars.win | 19 +++++++++++++------ 8 files changed, 40 insertions(+), 29 deletions(-)
Title: R Bindings for 'ZeroMQ'
Description: Interface to the 'ZeroMQ' lightweight messaging kernel (see <https://zeromq.org/> for more information).
Author: Whit Armstrong [aut],
Michael Schubert [ctb],
Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between rzmq versions 0.9.14 dated 2024-10-04 and 0.9.15 dated 2024-12-16
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS | 3 +++ src/Makevars.win | 31 ++++++++++++++++++------------- 4 files changed, 27 insertions(+), 19 deletions(-)
Title: Toolkit for Encryption, Signatures and Certificates Based on
OpenSSL
Description: Bindings to OpenSSL libssl and libcrypto, plus custom SSH key parsers.
Supports RSA, DSA and EC curves P-256, P-384, P-521, and curve25519. Cryptographic
signatures can either be created and verified manually or via x509 certificates.
AES can be used in cbc, ctr or gcm mode for symmetric encryption; RSA for asymmetric
(public key) encryption or EC for Diffie Hellman. High-level envelope functions
combine RSA and AES for encrypting arbitrary sized data. Other utilities include key
generators, hash functions (md5, sha1, sha256, etc), base64 encoder, a secure random
number generator, and 'bignum' math methods for manually performing crypto
calculations on large multibyte integers.
Author: Jeroen Ooms [aut, cre] ,
Oliver Keyes [ctb]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between openssl versions 2.2.2 dated 2024-09-20 and 2.3.0 dated 2024-12-16
DESCRIPTION | 6 ++--- MD5 | 26 +++++++++++------------ NEWS | 3 ++ R/hash.R | 8 +++++-- build/vignette.rds |binary cleanup | 1 configure | 5 ---- inst/doc/bignum.html | 32 ++++++++++++++-------------- inst/doc/crypto_hashing.html | 8 +++---- inst/doc/keys.html | 48 +++++++++++++++++++++---------------------- inst/doc/secure_rng.html | 18 ++++++++-------- man/hash.Rd | 8 +++++-- src/Makevars.win | 24 +++++++++++++-------- src/ssl.c | 4 ++- 14 files changed, 102 insertions(+), 89 deletions(-)
Title: Latent Interaction (and Moderation) Analysis in Structural
Equation Models (SEM)
Description: Estimation of interaction (i.e., moderation) effects between latent variables
in structural equation models (SEM).
The supported methods are:
The constrained approach (Algina & Moulder, 2001).
The unconstrained approach (Marsh et al., 2004).
The residual centering approach (Little et al., 2006).
The double centering approach (Lin et al., 2010).
The latent moderated structural equations (LMS) approach (Klein & Moosbrugger, 2000).
The quasi-maximum likelihood (QML) approach (Klein & Muthén, 2007) (temporarily unavailable)
The constrained- unconstrained, residual- and double centering- approaches
are estimated via 'lavaan' (Rosseel, 2012), whilst the LMS- and QML- approaches
are estimated via by modsem it self. Alternatively model can be
estimated via 'Mplus' (Muthén & Muthén, 1998-2017).
References:
Algina, J., & Moulder, B. C. (2001).
<doi:10.1207/S15328007SEM0801_3>.
"A note on estimating the Jöreskog-Yang model for latent variable interaction using 'LISREL' 8 [...truncated...]
Author: Kjell Solem Slupphaug [aut, cre]
,
Mehmet Mehmetoglu [ctb] ,
Matthias Mittner [ctb]
Maintainer: Kjell Solem Slupphaug <slupphaugkjell@gmail.com>
Diff between modsem versions 1.0.4 dated 2024-11-15 and 1.0.5 dated 2024-12-16
DESCRIPTION | 6 MD5 | 56 +++--- NAMESPACE | 10 + R/calc_se_da.R | 73 +++++--- R/est_lms.R | 3 R/est_qml.R | 3 R/method_settings_da.R | 2 R/model_da.R | 6 R/model_parameters_da.R | 8 R/modsem.R | 2 R/modsem_da.R | 15 + R/modsem_pi.R | 48 ++--- R/plot_interaction.R | 326 ++++++++++++++++++++++++++++++++++++--- R/simulate_partable.R | 7 R/utils.R | 22 ++ R/utils_da.R | 7 inst/CITATION | 13 - inst/doc/plot_interactions.R | 32 +++ inst/doc/plot_interactions.Rmd | 50 +++++ inst/doc/plot_interactions.html | 54 ++++++ man/modsem.Rd | 2 man/modsem_da.Rd | 6 man/modsem_pi.Rd | 4 man/plot_interaction.Rd | 7 man/plot_jn.Rd |only tests/testthat/test_lav_models.R | 10 + tests/testthat/test_lms.R | 2 tests/testthat/test_missing.R |only tests/testthat/test_qml.R | 10 + vignettes/plot_interactions.Rmd | 50 +++++ 30 files changed, 692 insertions(+), 142 deletions(-)
Title: Client for 'jq', a 'JSON' Processor
Description: Client for 'jq', a 'JSON' processor (<https://jqlang.github.io/jq/>),
written in C. 'jq' allows the following with 'JSON' data: index into, parse,
do calculations, cut up and filter, change key names and values, perform
conditionals and comparisons, and more.
Author: Rich FitzJohn [aut],
Jeroen Ooms [aut, cre],
Scott Chamberlain [aut],
Stefan Milton Bache [aut]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between jqr versions 1.3.5 dated 2024-10-04 and 1.4.0 dated 2024-12-16
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 5 +++++ src/Makevars.win | 22 +++++++++++++++------- 4 files changed, 26 insertions(+), 13 deletions(-)
Title: Call 'EPANET' Functions to Simulate Pipe Networks
Description: Enables simulation of water piping networks using 'EPANET'.
The package provides functions from the 'EPANET' programmer's toolkit as R
functions so that basic or customized simulations can be carried out from R.
The package uses 'EPANET' version 2.2 from Open Water Analytics
<https://github.com/OpenWaterAnalytics/EPANET/releases/tag/v2.2>.
Author: Ernesto Arandia [aut],
Bradley Eck [aut, cre],
Lew Rossman [aut],
Michael Tryby [ctb],
Sam Hatchett [ctb],
Feng Shang [ctb],
James Uber [ctb],
Tom Taxon [ctb],
Hyoungmin Woo [ctb],
Jinduan Chen [ctb],
Yunier Soad [ctb],
Mike Kane [ctb],
Demetrios Eli [...truncated...]
Maintainer: Bradley Eck <brad@bradeck.net>
Diff between epanet2toolkit versions 1.0.5 dated 2024-05-26 and 1.0.8 dated 2024-12-16
epanet2toolkit-1.0.5/epanet2toolkit/man/epanet2toolkit.Rd |only epanet2toolkit-1.0.5/epanet2toolkit/tests/testthat/Net1-getrules.rpt |only epanet2toolkit-1.0.5/epanet2toolkit/tests/testthat/Net1-ld.rpt |only epanet2toolkit-1.0.5/epanet2toolkit/tests/testthat/Net1-rt.bin |only epanet2toolkit-1.0.5/epanet2toolkit/tests/testthat/pattern-tests-cawd.rpt |only epanet2toolkit-1.0.5/epanet2toolkit/tests/testthat/pattern-tests-fqta.rpt |only epanet2toolkit-1.0.5/epanet2toolkit/tests/testthat/pattern-tests-iawb.rpt |only epanet2toolkit-1.0.5/epanet2toolkit/tests/testthat/pattern-tests-mluf.rpt |only epanet2toolkit-1.0.5/epanet2toolkit/tests/testthat/pattern-tests-szak.rpt |only epanet2toolkit-1.0.8/epanet2toolkit/DESCRIPTION | 10 epanet2toolkit-1.0.8/epanet2toolkit/MD5 | 62 +- epanet2toolkit-1.0.8/epanet2toolkit/NAMESPACE | 24 - epanet2toolkit-1.0.8/epanet2toolkit/R/Rtoolkit.R | 12 epanet2toolkit-1.0.8/epanet2toolkit/R/controls.r | 8 epanet2toolkit-1.0.8/epanet2toolkit/R/epanet2toolkit.r | 21 epanet2toolkit-1.0.8/epanet2toolkit/R/hydraulics.r | 63 +- epanet2toolkit-1.0.8/epanet2toolkit/R/links.r | 7 epanet2toolkit-1.0.8/epanet2toolkit/R/nodes.r | 7 epanet2toolkit-1.0.8/epanet2toolkit/R/patterns.r | 14 epanet2toolkit-1.0.8/epanet2toolkit/man/ENrunH.Rd | 2 epanet2toolkit-1.0.8/epanet2toolkit/man/epanet2toolkit-package.Rd |only epanet2toolkit-1.0.8/epanet2toolkit/src/Repanet2.c | 68 ++ epanet2toolkit-1.0.8/epanet2toolkit/src/Repanet2.h | 12 epanet2toolkit-1.0.8/epanet2toolkit/src/init.c | 24 - epanet2toolkit-1.0.8/epanet2toolkit/src/input2.c | 8 epanet2toolkit-1.0.8/epanet2toolkit/src/report.c | 4 epanet2toolkit-1.0.8/epanet2toolkit/src/toolkit.c | 235 ---------- epanet2toolkit-1.0.8/epanet2toolkit/src/toolkit.h | 12 epanet2toolkit-1.0.8/epanet2toolkit/tests/testthat/Net1.rpt | 6 epanet2toolkit-1.0.8/epanet2toolkit/tests/testthat/Net2.rpt | 6 epanet2toolkit-1.0.8/epanet2toolkit/tests/testthat/Net3.bin |binary epanet2toolkit-1.0.8/epanet2toolkit/tests/testthat/Net3.rpt | 6 epanet2toolkit-1.0.8/epanet2toolkit/tests/testthat/test_ENclose.r | 2 epanet2toolkit-1.0.8/epanet2toolkit/tests/testthat/test_call.r | 18 epanet2toolkit-1.0.8/epanet2toolkit/tests/testthat/test_patterns.r | 2 epanet2toolkit-1.0.8/epanet2toolkit/tests/testthat/test_report.r | 1 epanet2toolkit-1.0.8/epanet2toolkit/tests/testthat/test_times.r | 2 37 files changed, 226 insertions(+), 410 deletions(-)
More information about epanet2toolkit at CRAN
Permanent link
Title: Maximum Likelihood Estimation of Various Univariate and
Multivariate Distributions
Description: Several functions for maximum likelihood estimation of various univariate and multivariate distributions. The list includes more than 100 functions for univariate continuous and discrete distributions, distributions that lie on the real line, the positive line, interval restricted, circular distributions. Further, multivariate continuous and discrete distributions, distributions for compositional and directional data, etc. Some references include Johnson N. L., Kotz S. and Balakrishnan N. (1994). "Continuous Univariate Distributions, Volume 1" <ISBN:978-0-471-58495-7>, Johnson, Norman L. Kemp, Adrianne W. Kotz, Samuel (2005). "Univariate Discrete Distributions". <ISBN:978-0-471-71580-1> and Mardia, K. V. and Jupp, P. E. (2000). "Directional Statistics". <ISBN:978-0-471-95333-3>.
Author: Michail Tsagris [aut, cre],
Sofia Piperaki [aut],
Muhammad Imran [ctb]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between MLE versions 1.2 dated 2024-10-23 and 1.3 dated 2024-12-16
DESCRIPTION | 12 ++++++------ MD5 | 14 +++++++------- NAMESPACE | 2 ++ R/disc.mle.R | 17 +++++++++++++++++ R/positive.mle.R | 20 ++++++++++++++++++++ man/MLE-package.Rd | 4 ++-- man/disc.mle.Rd | 11 ++++++++--- man/positive.mle.Rd | 4 +++- 8 files changed, 65 insertions(+), 19 deletions(-)
Title: Estimate Vapnik-Chervonenkis Dimension and Sample Complexity
Description: We provide a suite of tools for estimating the sample complexity of a chosen model through theoretical bounds and simulation. The package incorporates methods for estimating the Vapnik-Chervonenkis dimension (VCD) of a chosen algorithm, which can be used to estimate its sample complexity. Alternatively, we provide simulation methods to estimate sample complexity directly. For more details, see Carter, P & Choi, D (2024). "Learning from Noise: Applying Sample Complexity for Political Science Research" <doi:10.31219/osf.io/evrcj>.
Author: Perry Carter [aut, cre] ,
Dahyun Choi [aut]
Maintainer: Perry Carter <pjc504@nyu.edu>
Diff between scR versions 0.1.0 dated 2024-12-02 and 0.2.0 dated 2024-12-16
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/simulations.R | 19 +++++++++++++++---- man/estimate_accuracy.Rd | 9 +++++++++ 4 files changed, 30 insertions(+), 10 deletions(-)
Title: The COR for Optimal Subset Selection in Distributed Estimation
Description: An algorithm of optimal subset selection, related to Covariance matrices, observation matrices and Response vectors (COR) to select the optimal subsets in distributed estimation. The philosophy of the package is described in Guo G. (2024) <doi:10.1007/s11222-024-10471-z>.
Author: Guangbao Guo [aut, cre] ,
Haoyue Song [aut],
Lixing Zhu [aut]
Maintainer: Guangbao Guo <ggb11111111@163.com>
Diff between COR versions 0.1.0 dated 2024-11-18 and 0.2.0 dated 2024-12-16
DESCRIPTION | 12 +++++------- MD5 | 38 +++++++++++++++++++------------------- R/COR.R | 2 ++ R/LICbeta.R | 2 ++ R/LICnew.R | 3 ++- R/MSEbeta.R | 3 ++- R/MSEcom.R | 2 ++ R/MSEver.R | 2 ++ R/beta_AD.R | 2 ++ R/beta_LW.R | 2 ++ R/beta_cor.R | 2 ++ man/COR.Rd | 3 +++ man/LICbeta.Rd | 3 +++ man/LICnew.Rd | 3 +++ man/MSEbeta.Rd | 3 +++ man/MSEcom.Rd | 3 +++ man/MSEver.Rd | 3 +++ man/beta_AD.Rd | 3 +++ man/beta_LW.Rd | 3 +++ man/beta_cor.Rd | 3 +++ 20 files changed, 69 insertions(+), 28 deletions(-)
Title: Multicountry Term Structure of Interest Rates Models
Description: Estimation routines for several classes of affine term structure of interest rates models. All the models are based on the single-country unspanned macroeconomic risk framework from Joslin, Priebsch, and Singleton (2014, JF) <doi:10.1111/jofi.12131>. Multicountry extensions such as the ones of Jotikasthira, Le, and Lundblad (2015, JFE) <doi:10.1016/j.jfineco.2014.09.004>, Candelon and Moura (2023, EM) <doi:10.1016/j.econmod.2023.106453>, and Candelon and Moura (Forthcoming, JFEC) <doi:10.1093/jjfinec/nbae008> are also available.
Author: Rubens Moura [aut, cre]
Maintainer: Rubens Moura <rubens.gtmoura@gmail.com>
Diff between MultiATSM versions 1.0.0 dated 2024-10-15 and 1.1.0 dated 2024-12-16
MultiATSM-1.0.0/MultiATSM/R/f_with_vectorized_parameters.R |only MultiATSM-1.0.0/MultiATSM/R/getx.R |only MultiATSM-1.0.0/MultiATSM/man/FitgraphsJoint.Rd |only MultiATSM-1.0.0/MultiATSM/man/FitgraphsSep.Rd |only MultiATSM-1.0.0/MultiATSM/man/GIRFSep.Rd |only MultiATSM-1.0.0/MultiATSM/man/GIRFSep_BS.Rd |only MultiATSM-1.0.0/MultiATSM/man/GIRFgraphsJLLOrtho.Rd |only MultiATSM-1.0.0/MultiATSM/man/GIRFgraphsJoint.Rd |only MultiATSM-1.0.0/MultiATSM/man/GIRFgraphsSep.Rd |only MultiATSM-1.0.0/MultiATSM/man/GIRFjoint.Rd |only MultiATSM-1.0.0/MultiATSM/man/GIRFjointOrthoJLL.Rd |only MultiATSM-1.0.0/MultiATSM/man/GIRFjointOrthoJLL_BS.Rd |only MultiATSM-1.0.0/MultiATSM/man/GIRFjoint_BS.Rd |only MultiATSM-1.0.0/MultiATSM/man/IRFgraphsJLLOrtho.Rd |only MultiATSM-1.0.0/MultiATSM/man/IRFgraphsJoint.Rd |only MultiATSM-1.0.0/MultiATSM/man/IRFgraphsSep.Rd |only MultiATSM-1.0.0/MultiATSM/man/IRFjoint.Rd |only MultiATSM-1.0.0/MultiATSM/man/IRFjointOrthoJLL.Rd |only MultiATSM-1.0.0/MultiATSM/man/IRFjointOrthoJLL_BS.Rd |only MultiATSM-1.0.0/MultiATSM/man/IRFjoint_BS.Rd |only MultiATSM-1.0.0/MultiATSM/man/IRFsep.Rd |only MultiATSM-1.0.0/MultiATSM/man/IRFsep_BS.Rd |only MultiATSM-1.0.0/MultiATSM/man/VarianceExplainedJoint.Rd |only MultiATSM-1.0.0/MultiATSM/man/VarianceExplainedSep.Rd |only MultiATSM-1.0.0/MultiATSM/man/YieldsFitJoint.Rd |only MultiATSM-1.0.0/MultiATSM/man/YieldsFitsep.Rd |only MultiATSM-1.0.0/MultiATSM/man/aux2true.Rd |only MultiATSM-1.0.0/MultiATSM/man/f_with_vectorized_parameters.Rd |only MultiATSM-1.0.0/MultiATSM/man/getx.Rd |only MultiATSM-1.0.0/MultiATSM/man/killa.Rd |only MultiATSM-1.0.0/MultiATSM/man/true2aux.Rd |only MultiATSM-1.0.0/MultiATSM/man/update_para.Rd |only MultiATSM-1.1.0/MultiATSM/DESCRIPTION | 12 MultiATSM-1.1.0/MultiATSM/MD5 | 113 MultiATSM-1.1.0/MultiATSM/NAMESPACE | 2 MultiATSM-1.1.0/MultiATSM/R/Bootstrap.R | 6 MultiATSM-1.1.0/MultiATSM/R/Buildx_xvec.R |only MultiATSM-1.1.0/MultiATSM/R/ConfidenceBoundsBootstrap.R | 2 MultiATSM-1.1.0/MultiATSM/R/DatabasePrep.R | 2 MultiATSM-1.1.0/MultiATSM/R/ForecastYields.R | 6 MultiATSM-1.1.0/MultiATSM/R/Functionf_vectorized.R |only MultiATSM-1.1.0/MultiATSM/R/GVAR.R | 33 MultiATSM-1.1.0/MultiATSM/R/GraphicalOutputs.R | 1371 ++++------ MultiATSM-1.1.0/MultiATSM/R/InputsForOpt.R | 6 MultiATSM-1.1.0/MultiATSM/R/JLL.R | 10 MultiATSM-1.1.0/MultiATSM/R/MLEdensity.R | 24 MultiATSM-1.1.0/MultiATSM/R/MinorOptimizationFunctions.R | 5 MultiATSM-1.1.0/MultiATSM/R/NumOutputs.R | 1315 ++------- MultiATSM-1.1.0/MultiATSM/R/NumOutputsBootstrap.R | 840 ------ MultiATSM-1.1.0/MultiATSM/R/Optimization.R | 41 MultiATSM-1.1.0/MultiATSM/R/Reg_K1Q.R | 9 MultiATSM-1.1.0/MultiATSM/R/RiskFactorsPrep.R | 2 MultiATSM-1.1.0/MultiATSM/inst/doc/Guidelines.html | 4 MultiATSM-1.1.0/MultiATSM/inst/doc/Paper-Replications.html | 4 MultiATSM-1.1.0/MultiATSM/man/AdjustPathIRFs.Rd |only MultiATSM-1.1.0/MultiATSM/man/Adjust_Const_Type.Rd |only MultiATSM-1.1.0/MultiATSM/man/Aux_BlockDiag.Rd |only MultiATSM-1.1.0/MultiATSM/man/Aux_BoundDiag.Rd |only MultiATSM-1.1.0/MultiATSM/man/Aux_JLLstruct.Rd |only MultiATSM-1.1.0/MultiATSM/man/Aux_Jordan.Rd |only MultiATSM-1.1.0/MultiATSM/man/Aux_PSD.Rd |only MultiATSM-1.1.0/MultiATSM/man/BuildIRFlist.Rd |only MultiATSM-1.1.0/MultiATSM/man/Build_xvec.Rd |only MultiATSM-1.1.0/MultiATSM/man/ComputeGIRFs.Rd |only MultiATSM-1.1.0/MultiATSM/man/ComputeIRFs.Rd |only MultiATSM-1.1.0/MultiATSM/man/Fit_Subplot.Rd |only MultiATSM-1.1.0/MultiATSM/man/Fitgraphs.Rd |only MultiATSM-1.1.0/MultiATSM/man/FolderPrep_IRFs.Rd |only MultiATSM-1.1.0/MultiATSM/man/Functionf_vectorized.Rd |only MultiATSM-1.1.0/MultiATSM/man/GetAuxPara.Rd |only MultiATSM-1.1.0/MultiATSM/man/GetTruePara.Rd |only MultiATSM-1.1.0/MultiATSM/man/IRFandGIRF.Rd |only MultiATSM-1.1.0/MultiATSM/man/IRFandGIRF_BS.Rd |only MultiATSM-1.1.0/MultiATSM/man/IRFandGIRFgraphs.Rd |only MultiATSM-1.1.0/MultiATSM/man/IRFandGIRFs_Format_Fac.Rd |only MultiATSM-1.1.0/MultiATSM/man/IRFandGIRFs_Format_Yields.Rd |only MultiATSM-1.1.0/MultiATSM/man/ImposeStat_Aux.Rd |only MultiATSM-1.1.0/MultiATSM/man/ImposeStat_True.Rd |only MultiATSM-1.1.0/MultiATSM/man/Jordan_JLL.Rd |only MultiATSM-1.1.0/MultiATSM/man/Optimization_PE.Rd | 4 MultiATSM-1.1.0/MultiATSM/man/Remove_at.Rd |only MultiATSM-1.1.0/MultiATSM/man/True_BlockDiag.Rd |only MultiATSM-1.1.0/MultiATSM/man/True_BoundDiag.Rd |only MultiATSM-1.1.0/MultiATSM/man/True_JLLstruct.Rd |only MultiATSM-1.1.0/MultiATSM/man/True_Jordan.Rd |only MultiATSM-1.1.0/MultiATSM/man/True_PSD.Rd |only MultiATSM-1.1.0/MultiATSM/man/Update_ParaList.Rd |only MultiATSM-1.1.0/MultiATSM/man/VarianceExplained.Rd |only MultiATSM-1.1.0/MultiATSM/man/Wished_Graphs_IRFandGIRF.Rd |only MultiATSM-1.1.0/MultiATSM/man/Y_Fit.Rd |only MultiATSM-1.1.0/MultiATSM/man/Y_ModImp.Rd |only MultiATSM-1.1.0/MultiATSM/man/YieldsFit.Rd |only MultiATSM-1.1.0/MultiATSM/man/getpara.Rd | 10 93 files changed, 1242 insertions(+), 2579 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-05-25 0.9.5
2013-07-13 0.9-4
2013-04-07 0.9-3
2012-09-22 0.9-0
2011-01-21 0.8.1
2010-10-18 0.6
2009-11-30 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-01-25 0.2.3
2024-01-08 0.2.0
2023-11-09 0.1.1
2023-08-21 0.0.9
2023-01-30 0.0.6
2023-01-18 0.0.3