Title: Tools for Supply Chain Management, Demand and Supply Planning
Description: Perform flexible and quick calculations for Demand and Supply Planning, such as projected inventories and coverages, as well as replenishment plan. For any time bucket, daily, weekly or monthly, and any granularity level, product or group of products.
Author: Nicolas Nguyen [aut, cre]
Maintainer: Nicolas Nguyen <nikonguyen@yahoo.fr>
Diff between planr versions 0.4.2 dated 2024-09-22 and 0.4.3 dated 2025-01-22
DESCRIPTION | 8 MD5 | 16 R/drp.R | 2251 +++++++++++++++++++++++++--------------------- README.md | 10 build/vignette.rds |binary inst/doc/get_started.html | 579 ----------- inst/doc/user_cases.html | 675 +------------ man/drp.Rd | 2 tests/testthat/test-drp.R | 3 9 files changed, 1357 insertions(+), 2187 deletions(-)
Title: Simple Functions to Save Time and Memory
Description: Fast and memory-efficient (or 'cheap') tools to facilitate
efficient programming, saving time and memory. It aims to provide
'cheaper' alternatives to common base R functions, as well as some
additional functions.
Author: Nick Christofides [aut, cre]
Maintainer: Nick Christofides <nick.christofides.r@gmail.com>
Diff between cheapr versions 0.9.92 dated 2024-12-10 and 1.0.0 dated 2025-01-22
DESCRIPTION | 6 LICENSE | 2 MD5 | 46 ++-- NAMESPACE | 7 NEWS.md | 9 R/cheapr_table.R |only R/extras.R | 6 R/factors.R | 17 - R/get_breaks.R | 5 R/new_df.R | 23 ++ R/overview.R | 76 +++++++- R/scalars.R | 6 R/sequences.R | 3 R/utils.R | 47 ---- README.md | 284 +++++++++++++++--------------- man/cheapr_table.Rd |only man/factors.Rd | 6 man/figures/README-unnamed-chunk-30-1.png |binary man/figures/README-unnamed-chunk-30-2.png |binary man/figures/README-unnamed-chunk-33-1.png |only man/figures/README-unnamed-chunk-33-2.png |only man/get_breaks.Rd | 159 ++++++++-------- man/new_df.Rd | 23 +- man/scalars.Rd | 3 man/sequences.Rd | 3 src/sequences.cpp | 13 + 26 files changed, 414 insertions(+), 330 deletions(-)
Title: Network Meta-Analysis using Frequentist Methods
Description: A comprehensive set of functions providing frequentist methods for network meta-analysis (Balduzzi et al., 2023) <doi:10.18637/jss.v106.i02> and supporting Schwarzer et al. (2015) <doi:10.1007/978-3-319-21416-0>, Chapter 8 "Network Meta-Analysis":
- frequentist network meta-analysis following Rücker (2012) <doi:10.1002/jrsm.1058>;
- additive network meta-analysis for combinations of treatments (Rücker et al., 2020) <doi:10.1002/bimj.201800167>;
- network meta-analysis of binary data using the Mantel-Haenszel or non-central hypergeometric distribution method (Efthimiou et al., 2019) <doi:10.1002/sim.8158>, or penalised logistic regression (Evrenoglou et al., 2022) <doi:10.1002/sim.9562>;
- rankograms and ranking of treatments by the Surface under the cumulative ranking curve (SUCRA) (Salanti et al., 2013) <doi:10.1016/j.jclinepi.2010.03.016>;
- ranking of treatments using P-scores (frequentist analogue of SUCRAs without resampling) according to [...truncated...]
Author: Gerta Ruecker [aut] ,
Ulrike Krahn [aut],
Jochem Koenig [aut] ,
Orestis Efthimiou [aut] ,
Annabel Davies [aut] ,
Theodoros Papakonstantinou [aut]
,
Theodoros Evrenoglou [ctb] ,
Guido Schwarzer [aut, cre]
Maintainer: Guido Schwarzer <guido.schwarzer@uniklinik-freiburg.de>
Diff between netmeta versions 2.9-0 dated 2024-01-11 and 3.0-2 dated 2025-01-22
netmeta-2.9-0/netmeta/R/pairwise.R |only netmeta-2.9-0/netmeta/R/subset.pairwise.R |only netmeta-2.9-0/netmeta/man/hasse.Rd |only netmeta-2.9-0/netmeta/man/pairwise.Rd |only netmeta-2.9-0/netmeta/man/subset.pairwise.Rd |only netmeta-3.0-2/netmeta/DESCRIPTION | 29 netmeta-3.0-2/netmeta/MD5 | 357 ++++---- netmeta-3.0-2/netmeta/NAMESPACE | 68 + netmeta-3.0-2/netmeta/NEWS.md | 229 +++++ netmeta-3.0-2/netmeta/R/Baker2009.R | 4 netmeta-3.0-2/netmeta/R/Dogliotti2014.R | 4 netmeta-3.0-2/netmeta/R/Dong2013.R | 18 netmeta-3.0-2/netmeta/R/Franchini2012.R | 6 netmeta-3.0-2/netmeta/R/Gurusamy2011.R | 2 netmeta-3.0-2/netmeta/R/Linde2015.R | 2 netmeta-3.0-2/netmeta/R/Stowe2010.R | 4 netmeta-3.0-2/netmeta/R/Woods2010.R | 2 netmeta-3.0-2/netmeta/R/armlab.R | 2 netmeta-3.0-2/netmeta/R/as.data.frame.netconnection.R | 9 netmeta-3.0-2/netmeta/R/as.data.frame.netmeta.R | 1 netmeta-3.0-2/netmeta/R/chkmultiarm.R | 351 ++++---- netmeta-3.0-2/netmeta/R/compmatch.R | 4 netmeta-3.0-2/netmeta/R/compsplit.R | 4 netmeta-3.0-2/netmeta/R/comptrts.R | 10 netmeta-3.0-2/netmeta/R/contribution.matrix.R | 65 - netmeta-3.0-2/netmeta/R/createC-internal.R |only netmeta-3.0-2/netmeta/R/createC.R | 406 ++++++--- netmeta-3.0-2/netmeta/R/crossnma2netmeta.R |only netmeta-3.0-2/netmeta/R/decomp.design.R | 5 netmeta-3.0-2/netmeta/R/decomp.tau.R | 2 netmeta-3.0-2/netmeta/R/dietaryfat.R | 2 netmeta-3.0-2/netmeta/R/direct.indirect.R | 29 netmeta-3.0-2/netmeta/R/discomb.R | 681 ++++++++++------ netmeta-3.0-2/netmeta/R/forest-internal.R | 8 netmeta-3.0-2/netmeta/R/forest.netbind.R | 29 netmeta-3.0-2/netmeta/R/forest.netcomb.R | 84 +- netmeta-3.0-2/netmeta/R/forest.netcomparison.R | 30 netmeta-3.0-2/netmeta/R/forest.netcomplex.R | 30 netmeta-3.0-2/netmeta/R/forest.netmeta.R | 227 +++-- netmeta-3.0-2/netmeta/R/forest.netsplit.R | 79 - netmeta-3.0-2/netmeta/R/forest.subgroup.netmeta.R |only netmeta-3.0-2/netmeta/R/formatCC.R | 23 netmeta-3.0-2/netmeta/R/formatComp.R | 23 netmeta-3.0-2/netmeta/R/funnel.netmeta.R | 13 netmeta-3.0-2/netmeta/R/hasse.R | 78 + netmeta-3.0-2/netmeta/R/hatmatrix.R | 65 - netmeta-3.0-2/netmeta/R/heatplot.R | 1 netmeta-3.0-2/netmeta/R/heatplot.netmeta.R | 29 netmeta-3.0-2/netmeta/R/invmat.R | 1 netmeta-3.0-2/netmeta/R/is.installed.package.R | 2 netmeta-3.0-2/netmeta/R/mat2dat.table.R | 40 netmeta-3.0-2/netmeta/R/merge.pairwise.R |only netmeta-3.0-2/netmeta/R/meta-aux.R | 317 ++++++- netmeta-3.0-2/netmeta/R/meta-chk.R | 25 netmeta-3.0-2/netmeta/R/meta-format.R | 12 netmeta-3.0-2/netmeta/R/meta-het.R | 16 netmeta-3.0-2/netmeta/R/meta-is.R | 18 netmeta-3.0-2/netmeta/R/meta-set.R | 10 netmeta-3.0-2/netmeta/R/meta-xlab.R | 8 netmeta-3.0-2/netmeta/R/metabias.netmeta.R | 5 netmeta-3.0-2/netmeta/R/multiarm.R | 16 netmeta-3.0-2/netmeta/R/netbind.R | 46 - netmeta-3.0-2/netmeta/R/netcomb-internal.R |only netmeta-3.0-2/netmeta/R/netcomb.R | 170 ++-- netmeta-3.0-2/netmeta/R/netcomparison.R | 135 ++- netmeta-3.0-2/netmeta/R/netcomplex.R | 61 - netmeta-3.0-2/netmeta/R/netconnection.R | 460 ++++------ netmeta-3.0-2/netmeta/R/netcontrib.R | 94 +- netmeta-3.0-2/netmeta/R/netdistance.R | 156 +++ netmeta-3.0-2/netmeta/R/netgraph-internal.R | 54 - netmeta-3.0-2/netmeta/R/netgraph.R | 6 netmeta-3.0-2/netmeta/R/netgraph.discomb.R | 68 + netmeta-3.0-2/netmeta/R/netgraph.netcomb.R | 1 netmeta-3.0-2/netmeta/R/netgraph.netconnection.R | 3 netmeta-3.0-2/netmeta/R/netgraph.netimpact.R | 26 netmeta-3.0-2/netmeta/R/netgraph.netmeta.R | 81 - netmeta-3.0-2/netmeta/R/netheat.R | 9 netmeta-3.0-2/netmeta/R/netimpact.R | 40 netmeta-3.0-2/netmeta/R/netleague.R | 567 ++++++++----- netmeta-3.0-2/netmeta/R/netmatrix.R | 9 netmeta-3.0-2/netmeta/R/netmeasures.R | 49 - netmeta-3.0-2/netmeta/R/netmeta-internal.R | 128 ++- netmeta-3.0-2/netmeta/R/netmeta-package.R | 44 - netmeta-3.0-2/netmeta/R/netmeta.R | 694 +++++++++------- netmeta-3.0-2/netmeta/R/netmetabin.R | 753 ++++++++++++------ netmeta-3.0-2/netmeta/R/netpairwise.R | 421 +++++++--- netmeta-3.0-2/netmeta/R/netposet.R | 48 - netmeta-3.0-2/netmeta/R/netrank.R | 79 + netmeta-3.0-2/netmeta/R/netsplit.R | 373 +++++--- netmeta-3.0-2/netmeta/R/nettable.R | 35 netmeta-3.0-2/netmeta/R/nma.additive.R | 36 netmeta-3.0-2/netmeta/R/nma.krahn.R | 36 netmeta-3.0-2/netmeta/R/nma.ruecker.R | 402 +++++++++ netmeta-3.0-2/netmeta/R/plot.netposet.R | 19 netmeta-3.0-2/netmeta/R/plot.netrank.R | 22 netmeta-3.0-2/netmeta/R/plot.rankogram.R | 67 - netmeta-3.0-2/netmeta/R/prepare.R | 134 +++ netmeta-3.0-2/netmeta/R/print.decomp.design.R | 21 netmeta-3.0-2/netmeta/R/print.netbind.R | 19 netmeta-3.0-2/netmeta/R/print.netcomb.R | 310 ++++--- netmeta-3.0-2/netmeta/R/print.netimpact.R | 58 + netmeta-3.0-2/netmeta/R/print.netmeta.R | 465 ++++++----- netmeta-3.0-2/netmeta/R/print.rankogram.R |only netmeta-3.0-2/netmeta/R/print.summary.netcomb.R | 70 + netmeta-3.0-2/netmeta/R/print.summary.netmeta.R | 162 ++- netmeta-3.0-2/netmeta/R/radial.netmeta.R | 7 netmeta-3.0-2/netmeta/R/rankings.R |only netmeta-3.0-2/netmeta/R/rankogram.R | 302 ------- netmeta-3.0-2/netmeta/R/rankogram.default.R |only netmeta-3.0-2/netmeta/R/rankogram.netmeta.R |only netmeta-3.0-2/netmeta/R/ranksampling.R | 105 -- netmeta-3.0-2/netmeta/R/samples_netmeta.R |only netmeta-3.0-2/netmeta/R/setref.R | 12 netmeta-3.0-2/netmeta/R/setsep.R |only netmeta-3.0-2/netmeta/R/setseq.R | 15 netmeta-3.0-2/netmeta/R/settings.netmeta-internal.R |only netmeta-3.0-2/netmeta/R/settings.netmeta.R |only netmeta-3.0-2/netmeta/R/sidde.R | 9 netmeta-3.0-2/netmeta/R/smokingcessation.R | 2 netmeta-3.0-2/netmeta/R/subgroup.netmeta.R |only netmeta-3.0-2/netmeta/R/summary.netcomb.R | 152 +++ netmeta-3.0-2/netmeta/R/summary.netconnection.R |only netmeta-3.0-2/netmeta/R/summary.netmeta.R | 145 ++- netmeta-3.0-2/netmeta/R/tau.within.R | 2 netmeta-3.0-2/netmeta/R/textmeth.R |only netmeta-3.0-2/netmeta/R/treats.R | 5 netmeta-3.0-2/netmeta/R/updateversion.R | 62 + netmeta-3.0-2/netmeta/build/vignette.rds |binary netmeta-3.0-2/netmeta/inst/doc/netmeta.pdf |binary netmeta-3.0-2/netmeta/man/Baker2009.Rd | 4 netmeta-3.0-2/netmeta/man/Dogliotti2014.Rd | 4 netmeta-3.0-2/netmeta/man/Dong2013.Rd | 17 netmeta-3.0-2/netmeta/man/Franchini2012.Rd | 5 netmeta-3.0-2/netmeta/man/Gurusamy2011.Rd | 2 netmeta-3.0-2/netmeta/man/Linde2015.Rd | 2 netmeta-3.0-2/netmeta/man/Stowe2010.Rd | 4 netmeta-3.0-2/netmeta/man/Woods2010.Rd | 2 netmeta-3.0-2/netmeta/man/createC.Rd |only netmeta-3.0-2/netmeta/man/crossnma2netmeta.Rd |only netmeta-3.0-2/netmeta/man/decomp.design.Rd | 2 netmeta-3.0-2/netmeta/man/dietaryfat.Rd | 2 netmeta-3.0-2/netmeta/man/discomb.Rd | 55 + netmeta-3.0-2/netmeta/man/forest.netbind.Rd | 12 netmeta-3.0-2/netmeta/man/forest.netcomb.Rd | 37 netmeta-3.0-2/netmeta/man/forest.netcomparison.Rd | 23 netmeta-3.0-2/netmeta/man/forest.netcomplex.Rd | 23 netmeta-3.0-2/netmeta/man/forest.netmeta.Rd | 42 - netmeta-3.0-2/netmeta/man/forest.netsplit.Rd | 22 netmeta-3.0-2/netmeta/man/forest.subgroup.netmeta.Rd |only netmeta-3.0-2/netmeta/man/funnel.netmeta.Rd | 8 netmeta-3.0-2/netmeta/man/hasse.netposet.Rd |only netmeta-3.0-2/netmeta/man/hatmatrix.Rd | 7 netmeta-3.0-2/netmeta/man/merge.pairwise.Rd |only netmeta-3.0-2/netmeta/man/metabias.netmeta.Rd | 4 netmeta-3.0-2/netmeta/man/netbind.Rd | 2 netmeta-3.0-2/netmeta/man/netcomb.Rd | 13 netmeta-3.0-2/netmeta/man/netcomparison.Rd | 2 netmeta-3.0-2/netmeta/man/netcomplex.Rd | 2 netmeta-3.0-2/netmeta/man/netconnection.Rd | 38 netmeta-3.0-2/netmeta/man/netcontrib.Rd | 50 - netmeta-3.0-2/netmeta/man/netdistance.Rd | 29 netmeta-3.0-2/netmeta/man/netgraph.Rd | 6 netmeta-3.0-2/netmeta/man/netgraph.discomb.Rd | 34 netmeta-3.0-2/netmeta/man/netgraph.netconnection.Rd | 2 netmeta-3.0-2/netmeta/man/netgraph.netimpact.Rd | 22 netmeta-3.0-2/netmeta/man/netgraph.netmeta.Rd | 32 netmeta-3.0-2/netmeta/man/netimpact.Rd | 17 netmeta-3.0-2/netmeta/man/netleague.Rd | 100 +- netmeta-3.0-2/netmeta/man/netmeasures.Rd | 2 netmeta-3.0-2/netmeta/man/netmeta-package.Rd | 15 netmeta-3.0-2/netmeta/man/netmeta.Rd | 295 +++---- netmeta-3.0-2/netmeta/man/netmetabin.Rd | 106 +- netmeta-3.0-2/netmeta/man/netpairwise.Rd | 58 + netmeta-3.0-2/netmeta/man/netposet.Rd | 33 netmeta-3.0-2/netmeta/man/netsplit.Rd | 71 + netmeta-3.0-2/netmeta/man/nettable.Rd | 14 netmeta-3.0-2/netmeta/man/plot.netposet.Rd | 16 netmeta-3.0-2/netmeta/man/plot.netrank.Rd | 19 netmeta-3.0-2/netmeta/man/plot.rankogram.Rd | 14 netmeta-3.0-2/netmeta/man/print.decomp.design.Rd | 2 netmeta-3.0-2/netmeta/man/print.netcomb.Rd | 39 netmeta-3.0-2/netmeta/man/print.netimpact.Rd | 26 netmeta-3.0-2/netmeta/man/print.netmeta.Rd |only netmeta-3.0-2/netmeta/man/print.rankogram.Rd |only netmeta-3.0-2/netmeta/man/print.summary.netcomb.Rd | 38 netmeta-3.0-2/netmeta/man/print.summary.netmeta.Rd | 44 - netmeta-3.0-2/netmeta/man/radial.netmeta.Rd | 6 netmeta-3.0-2/netmeta/man/rankogram.Rd | 104 -- netmeta-3.0-2/netmeta/man/rankogram.default.Rd |only netmeta-3.0-2/netmeta/man/rankogram.netmeta.Rd |only netmeta-3.0-2/netmeta/man/settings.netmeta.Rd |only netmeta-3.0-2/netmeta/man/smokingcessation.Rd | 2 netmeta-3.0-2/netmeta/man/subgroup.netmeta.Rd |only netmeta-3.0-2/netmeta/man/summary.netcomb.Rd | 127 ++- netmeta-3.0-2/netmeta/man/summary.netconnection.Rd |only netmeta-3.0-2/netmeta/man/summary.netmeta.Rd | 74 + 196 files changed, 7997 insertions(+), 4468 deletions(-)
Title: Functions to Facilitate the Simulation of Large Scale Assessment
Data
Description: Provides functions to simulate data from large-scale educational
assessments, including background questionnaire data and cognitive item
responses that adhere to a multiple-matrix sampled design. The theoretical
foundation can be found on
Matta, T.H., Rutkowski, L., Rutkowski, D. et al. (2018)
<doi:10.1186/s40536-018-0068-8>.
Author: Tyler Matta [aut],
Leslie Rutkowski [aut],
David Rutkowski [aut],
Yuan-Ling Linda Liaw [aut],
Kondwani Kajera Mughogho [ctb],
Waldir Leoncio [aut, cre],
Sinan Yavuz [ctb],
Paul Bailey [ctb]
Maintainer: Waldir Leoncio <w.l.netto@medisin.uio.no>
Diff between lsasim versions 2.1.5 dated 2024-05-06 and 2.1.6 dated 2025-01-22
DESCRIPTION | 11 MD5 | 180 ++++++------- NAMESPACE | 1 NEWS.md | 36 -- R/anova.R | 1 R/attribute_cluster_labels.R | 2 R/beta_gen.R | 2 R/brr.R | 2 R/calc_n_tilde.R | 4 R/calc_replicate_weights.R | 2 R/calc_se_rho.R | 4 R/calc_var_between.R | 2 R/calc_var_tot.R | 4 R/calc_var_within.R | 4 R/check_n_N_class.R | 2 R/check_valid_structure.R | 4 R/cluster_gen.R | 27 +- R/cluster_gen_separate.R | 32 -- R/cluster_gen_together.R | 25 - R/cluster_message.R | 17 - R/customize_summary.R | 4 R/intraclass_cor.R | 4 R/jackknife.R | 4 R/label_respondents.R | 4 R/misc.R | 4 R/pisa2012_math_block.R | 10 R/pisa2012_math_booklet.R | 14 - R/pisa2012_math_item.R | 12 R/pisa2012_q_cormat.R | 4 R/pisa2012_q_marginal.R | 50 +-- R/print_anova_table.R | 4 R/questionnaire_gen.R | 2 R/replicate_var.R | 2 R/summary.R | 4 R/summary_2.R | 4 R/trim_sample.R | 2 build/vignette.rds |binary inst/doc/ex1_BackgroundQuestionnaireGeneration.R | 10 inst/doc/ex1_BackgroundQuestionnaireGeneration.html | 4 inst/doc/ex2_UnderstandingElementsOutput.R | 12 inst/doc/ex2_UnderstandingElementsOutput.html | 4 inst/doc/ex3_RetrievingRegressionCoefficients.html | 4 inst/doc/ex4_GeneratingClusterSamples.R | 16 - inst/doc/ex4_GeneratingClusterSamples.html | 132 ++++----- man/anova.lsasimcluster.Rd | 13 man/attribute_cluster_labels.Rd | 4 man/beta_gen.Rd | 88 +++--- man/block_design.Rd | 4 man/booklet_sample.Rd | 4 man/brr.Rd | 8 man/calc_n_tilde.Rd | 2 man/calc_replicate_weights.Rd | 10 man/calc_se_rho.Rd | 2 man/calc_var_between.Rd | 2 man/calc_var_tot.Rd | 2 man/calc_var_within.Rd | 2 man/check_n_N_class.Rd | 8 man/check_valid_structure.Rd | 2 man/cluster_gen.Rd | 62 ++-- man/cluster_gen_separate.Rd | 30 +- man/cluster_gen_together.Rd | 28 +- man/cluster_message.Rd | 4 man/convert_vector_to_list.Rd | 2 man/cov_gen.Rd | 2 man/customize_summary.Rd | 4 man/dot-onAttach.Rd | 6 man/draw_cluster_structure.Rd | 2 man/gen_X_W_cluster.Rd | 6 man/intraclass_cor.Rd | 2 man/jackknife.Rd | 6 man/label_respondents.Rd | 6 man/lsasim.Rd | 28 +- man/pisa2012_math_block.Rd | 32 +- man/pisa2012_math_booklet.Rd | 28 +- man/pisa2012_math_item.Rd | 18 - man/pisa2012_q_cormat.Rd | 46 +-- man/pisa2012_q_marginal.Rd | 48 +-- man/pluralize.Rd | 2 man/print_anova.Rd | 4 man/proportion_gen.Rd | 6 man/questionnaire_gen.Rd | 270 ++++++++++---------- man/ranges.Rd | 6 man/recalc_final_weights.Rd | 2 man/replicate_var.Rd | 8 man/sample_from.Rd | 2 man/select.Rd | 6 man/summary.lsasimcluster.Rd | 16 - man/summary_2.Rd | 2 man/trim_sample.Rd | 2 man/weight_responses.Rd | 6 tests/testthat/test.cat_prop.rho.R |only tests/testthat/test.sampling.R |only 92 files changed, 750 insertions(+), 765 deletions(-)
Title: Counting Codes in a Text and Preparing Data for Analysis
Description: Data analysis often requires coding, especially when data are collected through interviews, observations, or questionnaires. As a result, code counting and data preparation are essential steps in the analysis process. Analysts may need to count the codes in a text (Tokenization, counting of pre-established codes, computing the co-occurrence matrix by line) and prepare the data (e.g., min-max normalization, Z-score, robust scaling, Box-Cox transformation, and non-parametric bootstrap). For the Box-Cox transformation (Box & Cox, 1964, <https://www.jstor.org/stable/2984418>), the optimal Lambda is determined using the log-likelihood method. Non-parametric bootstrap involves randomly sampling data with replacement. Two random number generators are also integrated: a Lehmer congruential generator for uniform distribution and a Box-Muller generator for normal distribution. Package for educational purposes.
Author: Philippe Cohard [aut, cre]
Maintainer: Philippe Cohard <p.cohard@laposte.net>
Diff between codecountR versions 0.0.4.5 dated 2024-10-16 and 0.0.4.7 dated 2025-01-22
DESCRIPTION | 8 ++++---- MD5 | 8 ++++++-- NAMESPACE | 2 ++ R/cooc.R |only R/testPairs.R |only man/cooc.Rd |only man/testPairs.Rd |only 7 files changed, 12 insertions(+), 6 deletions(-)
Title: Comprehensive Science Mapping Analysis
Description: Tool for quantitative research in scientometrics and bibliometrics.
It implements the comprehensive workflow for science mapping analysis proposed in Aria M. and
Cuccurullo C. (2017) <doi:10.1016/j.joi.2017.08.007>.
'bibliometrix' provides various routines for importing bibliographic data from 'SCOPUS',
'Clarivate Analytics Web of Science' (<https://www.webofknowledge.com/>), 'Digital Science Dimensions'
(<https://www.dimensions.ai/>), 'OpenAlex' (<https://openalex.org/>), 'Cochrane Library' (<https://www.cochranelibrary.com/>), 'Lens' (<https://lens.org>),
and 'PubMed' (<https://pubmed.ncbi.nlm.nih.gov/>) databases, performing bibliometric analysis
and building networks for co-citation, coupling, scientific collaboration and co-word analysis.
Author: Massimo Aria [cre, aut, cph] ,
Corrado Cuccurullo [aut]
Maintainer: Massimo Aria <aria@unina.it>
Diff between bibliometrix versions 4.3.0 dated 2024-07-01 and 4.3.1 dated 2025-01-22
bibliometrix-4.3.0/bibliometrix/tests |only bibliometrix-4.3.1/bibliometrix/DESCRIPTION | 12 bibliometrix-4.3.1/bibliometrix/MD5 | 45 +- bibliometrix-4.3.1/bibliometrix/NAMESPACE | 8 bibliometrix-4.3.1/bibliometrix/R/apiOA2df.R |only bibliometrix-4.3.1/bibliometrix/R/cocMatrix.R | 1 bibliometrix-4.3.1/bibliometrix/R/convert2df.R | 19 bibliometrix-4.3.1/bibliometrix/R/csvOA2df.R | 267 +++++++------- bibliometrix-4.3.1/bibliometrix/R/mergeDbSources.R | 3 bibliometrix-4.3.1/bibliometrix/R/sysdata.rda |binary bibliometrix-4.3.1/bibliometrix/R/termExtraction.R | 2 bibliometrix-4.3.1/bibliometrix/R/threeFieldsPlot.R | 20 - bibliometrix-4.3.1/bibliometrix/R/zzz.R | 23 - bibliometrix-4.3.1/bibliometrix/build/partial.rdb |binary bibliometrix-4.3.1/bibliometrix/data/bibtag.rda |binary bibliometrix-4.3.1/bibliometrix/data/countries.rda |binary bibliometrix-4.3.1/bibliometrix/data/customTheme.rda |binary bibliometrix-4.3.1/bibliometrix/data/logo.rda |binary bibliometrix-4.3.1/bibliometrix/data/stopwords.rda |binary bibliometrix-4.3.1/bibliometrix/inst/biblioshiny/server.R | 6 bibliometrix-4.3.1/bibliometrix/inst/biblioshiny/ui.R | 2 bibliometrix-4.3.1/bibliometrix/man/convert2df.Rd | 6 bibliometrix-4.3.1/bibliometrix/man/termExtraction.Rd | 2 bibliometrix-4.3.1/bibliometrix/man/threeFieldsPlot.Rd | 2 24 files changed, 222 insertions(+), 196 deletions(-)
Title: The Exterior Calculus
Description: Provides functionality for working with tensors, alternating
forms, wedge products, Stokes's theorem, and related concepts
from the exterior calculus. Uses 'disordR' discipline
(Hankin, 2022, <doi:10.48550/arXiv.2210.03856>). The
canonical reference would be M. Spivak
(1965, ISBN:0-8053-9021-9) "Calculus on Manifolds". To cite
the package in publications please use Hankin (2022)
<doi:10.48550/arXiv.2210.17008>.
Author: Robin K. S. Hankin [aut, cre]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between stokes versions 1.2-1 dated 2024-06-04 and 1.2-3 dated 2025-01-22
stokes-1.2-1/stokes/inst/read.me |only stokes-1.2-1/stokes/inst/stokes_arxiv.Rnw |only stokes-1.2-3/stokes/DESCRIPTION | 19 - stokes-1.2-3/stokes/MD5 | 130 ++++++----- stokes-1.2-3/stokes/NEWS.md | 69 +++--- stokes-1.2-3/stokes/R/mult.R | 2 stokes-1.2-3/stokes/README.md | 24 +- stokes-1.2-3/stokes/build/partial.rdb |binary stokes-1.2-3/stokes/build/vignette.rds |binary stokes-1.2-3/stokes/data/dx.rda |binary stokes-1.2-3/stokes/data/exeyez.rda |binary stokes-1.2-3/stokes/inst/doc/Alt.Rmd | 6 stokes-1.2-3/stokes/inst/doc/Alt.html | 12 - stokes-1.2-3/stokes/inst/doc/contract.R | 3 stokes-1.2-3/stokes/inst/doc/contract.Rmd | 11 - stokes-1.2-3/stokes/inst/doc/contract.html | 16 - stokes-1.2-3/stokes/inst/doc/dovs.Rmd | 1 stokes-1.2-3/stokes/inst/doc/dovs.html | 8 stokes-1.2-3/stokes/inst/doc/dx.R | 32 ++ stokes-1.2-3/stokes/inst/doc/dx.Rmd | 172 +++++++++++++-- stokes-1.2-3/stokes/inst/doc/dx.html | 186 ++++++++++++----- stokes-1.2-3/stokes/inst/doc/ex.Rmd | 1 stokes-1.2-3/stokes/inst/doc/ex.html | 2 stokes-1.2-3/stokes/inst/doc/hodge.Rmd | 5 stokes-1.2-3/stokes/inst/doc/hodge.html | 12 - stokes-1.2-3/stokes/inst/doc/inner.Rmd | 3 stokes-1.2-3/stokes/inst/doc/inner.html | 15 - stokes-1.2-3/stokes/inst/doc/kinner.Rmd | 1 stokes-1.2-3/stokes/inst/doc/kinner.pdf |binary stokes-1.2-3/stokes/inst/doc/phi.R |only stokes-1.2-3/stokes/inst/doc/phi.Rmd |only stokes-1.2-3/stokes/inst/doc/phi.html |only stokes-1.2-3/stokes/inst/doc/stokes.R | 1 stokes-1.2-3/stokes/inst/doc/stokes.Rmd | 2 stokes-1.2-3/stokes/inst/doc/stokes.html | 63 ++--- stokes-1.2-3/stokes/inst/doc/tensorprod.R |only stokes-1.2-3/stokes/inst/doc/tensorprod.Rmd |only stokes-1.2-3/stokes/inst/doc/tensorprod.html |only stokes-1.2-3/stokes/inst/doc/vector_cross_product.R | 2 stokes-1.2-3/stokes/inst/doc/vector_cross_product.Rmd | 1 stokes-1.2-3/stokes/inst/doc/vector_cross_product.html | 69 +++--- stokes-1.2-3/stokes/inst/doc/volume.Rmd | 1 stokes-1.2-3/stokes/inst/doc/volume.html | 4 stokes-1.2-3/stokes/inst/doc/wedge.Rmd | 10 stokes-1.2-3/stokes/inst/doc/wedge.html | 21 + stokes-1.2-3/stokes/man/dx.Rd | 2 stokes-1.2-3/stokes/man/inner.Rd | 4 stokes-1.2-3/stokes/man/phi.Rd |only stokes-1.2-3/stokes/man/print.Rd | 67 +++--- stokes-1.2-3/stokes/man/rform.Rd | 19 + stokes-1.2-3/stokes/man/scalar.Rd | 12 - stokes-1.2-3/stokes/man/summary.Rd | 2 stokes-1.2-3/stokes/man/symbolic.Rd | 4 stokes-1.2-3/stokes/man/vector_cross_product.Rd | 4 stokes-1.2-3/stokes/man/volume.Rd | 10 stokes-1.2-3/stokes/man/zap.Rd | 8 stokes-1.2-3/stokes/man/zero.Rd | 8 stokes-1.2-3/stokes/tests/testthat/test_phi.R |only stokes-1.2-3/stokes/vignettes/Alt.Rmd | 6 stokes-1.2-3/stokes/vignettes/contract.Rmd | 11 - stokes-1.2-3/stokes/vignettes/dovs.Rmd | 1 stokes-1.2-3/stokes/vignettes/dx.Rmd | 172 +++++++++++++-- stokes-1.2-3/stokes/vignettes/ex.Rmd | 1 stokes-1.2-3/stokes/vignettes/hodge.Rmd | 5 stokes-1.2-3/stokes/vignettes/inner.Rmd | 3 stokes-1.2-3/stokes/vignettes/kinner.Rmd | 1 stokes-1.2-3/stokes/vignettes/phi.Rmd |only stokes-1.2-3/stokes/vignettes/stokes.Rmd | 2 stokes-1.2-3/stokes/vignettes/tensorprod.Rmd |only stokes-1.2-3/stokes/vignettes/vector_cross_product.Rmd | 1 stokes-1.2-3/stokes/vignettes/volume.Rmd | 1 stokes-1.2-3/stokes/vignettes/wedge.Rmd | 10 72 files changed, 847 insertions(+), 411 deletions(-)
Title: Stepwise Regression Analysis
Description: The stepwise regression analysis is a statistical technique used to identify a subset of predictor variables essential for constructing predictive models. This package performs stepwise regression analysis across various regression models such as linear, logistic, Cox proportional hazards, Poisson, Gamma, and negative binomial regression. It incorporates diverse stepwise regression algorithms like forward selection, backward elimination, and bidirectional elimination alongside the best subset method. Additionally, it offers a wide range of selection criteria, including Akaike Information Criterion (AIC), Sawa Bayesian Information Criterion (BIC), and Significance Levels (SL). We validated the output accuracy of StepReg using public datasets within the SAS software environment. To facilitate efficient model comparison and selection, StepReg allows for multiple strategies and selection metrics to be executed in a single function call. Moreover, StepReg integrates a Shiny application for [...truncated...]
Author: Junhui Li [cre] ,
Junhui Li [aut],
Kai Hu [aut],
Xiaohuan Lu [aut],
Kun Cheng [ctb],
Sushmita N Nayak [ctb],
Cesar Bautista Sotelo [ctb],
Michael A Lodato [ctb],
Robert H Brown [ctb],
Wenxin Liu [aut],
Lihua Julie Zhu [aut]
Maintainer: Junhui Li <junhui.li11@umassmed.edu>
Diff between StepReg versions 1.5.6 dated 2024-12-05 and 1.5.7 dated 2025-01-22
DESCRIPTION | 8 - MD5 | 8 - R/stepwiseUtils.R | 2 inst/doc/StepReg.html | 82 +++++++-------- inst/shiny/rsconnect/shinyapps.io/junhuili1017/shiny.dcf | 2 5 files changed, 51 insertions(+), 51 deletions(-)
Title: Likelihood Based Inference
Description: Maximum likelihood estimation and likelihood ratio test are essential for modern statistics. This package supports in calculating likelihood based inference.
Reference: Pawitan Y. (2001, ISBN:0-19-850765-8).
Author: Kyun-Seop Bae [aut, cre, cph]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between LBI versions 0.2.1 dated 2024-11-15 and 0.2.2 dated 2025-01-22
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- inst/NEWS.Rd | 6 ++++++ inst/doc/LBI-manual.pdf |binary man/LBCIvar.Rd | 2 +- man/LInorm.Rd | 2 +- man/LInormVar.Rd | 2 +- man/LIvar.Rd | 2 +- man/LIvtest.Rd | 2 +- 9 files changed, 22 insertions(+), 16 deletions(-)
Title: ACE and AVAS for Selecting Multiple Regression Transformations
Description: Two nonparametric methods for multiple regression transform selection are provided.
The first, Alternative Conditional Expectations (ACE),
is an algorithm to find the fixed point of maximal
correlation, i.e. it finds a set of transformed response variables that maximizes R^2
using smoothing functions [see Breiman, L., and J.H. Friedman. 1985. "Estimating Optimal Transformations
for Multiple Regression and Correlation". Journal of the American Statistical Association.
80:580-598. <doi:10.1080/01621459.1985.10478157>].
Also included is the Additivity Variance Stabilization (AVAS) method which works better than ACE when
correlation is low [see Tibshirani, R.. 1986. "Estimating Transformations for Regression via Additivity
and Variance Stabilization". Journal of the American Statistical Association. 83:394-405.
<doi:10.1080/01621459.1988.10478610>]. A good introduction to these two methods is in chapter 16 of
Frank Harrel's "Regression Modeling Strategies" in the Springer Serie [...truncated...]
Author: Phil Spector [aut],
Jerome Friedman [aut],
Robert Tibshirani [aut],
Thomas Lumley [aut],
Shawn Garbett [cre, aut] ,
Jonathan Baron [aut]
Maintainer: Shawn Garbett <shawn.garbett@vumc.org>
Diff between acepack versions 1.5.0 dated 2025-01-21 and 1.5.1 dated 2025-01-22
DESCRIPTION | 6 ++-- MD5 | 16 +++++----- NEWS.md | 5 +++ src/acedata.f90 | 26 +++++++++++------ src/acemod.f90 | 75 ++++++++++++++++++++++++++++++-------------------- src/model.f90 | 58 +++++++++++++++++--------------------- src/rlsmo.f90 | 2 - src/scail.f90 | 2 - src/supersmoother.f90 | 1 9 files changed, 106 insertions(+), 85 deletions(-)
Title: Interactively Visualize Structural Equation Modeling Diagrams
Description: It is an R package and web-based application, allowing users to perform interactive and reproducible visualizations of path diagrams for structural equation modeling (SEM) and networks using the 'ggplot2' engine. Its app (built with 'shiny') provides an interface that allows extensive customization, and creates CSV outputs, which can then be used to recreate the figures either using the web app or script-based workflow.
Author: Seung Hyun Min [aut, cre]
Maintainer: Seung Hyun Min <seung.min@mail.mcgill.ca>
Diff between ggsem versions 0.2.1 dated 2025-01-15 and 0.2.2 dated 2025-01-22
DESCRIPTION | 8 +++--- MD5 | 18 +++++++-------- NAMESPACE | 1 R/adjust_axis_space.R | 2 - R/csv_to_ggplot.R | 25 +++------------------ R/draw_lines.R | 4 +-- README.md | 4 +++ inst/shiny/app.R | 23 +++---------------- inst/shiny/rsconnect/shinyapps.io/smin95/ggsem.dcf | 2 - man/draw_lines.Rd | 4 +-- 10 files changed, 31 insertions(+), 60 deletions(-)
Title: Quantile G-Computation
Description: G-computation for a set of time-fixed exposures with
quantile-based basis functions, possibly under linearity and
homogeneity assumptions. This approach estimates a regression line
corresponding to the expected change in the outcome (on the link
basis) given a simultaneous increase in the quantile-based category
for all exposures. Works with continuous, binary, and right-censored
time-to-event outcomes. Reference: Alexander P. Keil, Jessie P.
Buckley, Katie M. OBrien, Kelly K. Ferguson, Shanshan Zhao, and
Alexandra J. White (2019) A quantile-based g-computation approach to
addressing the effects of exposure mixtures; <doi:10.1289/EHP5838>.
Author: Alexander Keil [aut, cre]
Maintainer: Alexander Keil <alex.keil@nih.gov>
Diff between qgcomp versions 2.15.2 dated 2023-08-10 and 2.16.4 dated 2025-01-22
qgcomp-2.15.2/qgcomp/inst/doc/qgcomp-vignette.R |only qgcomp-2.15.2/qgcomp/inst/doc/qgcomp-vignette.Rmd |only qgcomp-2.15.2/qgcomp/inst/doc/qgcomp-vignette.html |only qgcomp-2.15.2/qgcomp/vignettes/qgcomp-vignette.Rmd |only qgcomp-2.16.4/qgcomp/DESCRIPTION | 13 - qgcomp-2.16.4/qgcomp/MD5 | 77 ++++---- qgcomp-2.16.4/qgcomp/NAMESPACE | 10 + qgcomp-2.16.4/qgcomp/NEWS.md | 12 + qgcomp-2.16.4/qgcomp/R/base.R | 2 qgcomp-2.16.4/qgcomp/R/base_bounds.R | 36 +++- qgcomp-2.16.4/qgcomp/R/base_esteq.R |only qgcomp-2.16.4/qgcomp/R/base_extensions.R | 48 ++++- qgcomp-2.16.4/qgcomp/R/base_generics.R | 107 ++++++++++-- qgcomp-2.16.4/qgcomp/R/base_multinomial.R | 25 +- qgcomp-2.16.4/qgcomp/R/base_plots.R | 101 +++++++++++ qgcomp-2.16.4/qgcomp/R/base_surv.R | 25 +- qgcomp-2.16.4/qgcomp/R/base_utility.R | 5 qgcomp-2.16.4/qgcomp/README.md | 13 - qgcomp-2.16.4/qgcomp/build/vignette.rds |binary qgcomp-2.16.4/qgcomp/inst/doc/qgcomp-advanced-vignette.R |only qgcomp-2.16.4/qgcomp/inst/doc/qgcomp-advanced-vignette.Rmd |only qgcomp-2.16.4/qgcomp/inst/doc/qgcomp-advanced-vignette.html |only qgcomp-2.16.4/qgcomp/inst/doc/qgcomp-basic-vignette.R |only qgcomp-2.16.4/qgcomp/inst/doc/qgcomp-basic-vignette.Rmd |only qgcomp-2.16.4/qgcomp/inst/doc/qgcomp-basic-vignette.html |only qgcomp-2.16.4/qgcomp/man/mice.impute.leftcenslognorm.Rd | 5 qgcomp-2.16.4/qgcomp/man/msm_multinomial_fit.Rd | 4 qgcomp-2.16.4/qgcomp/man/pointwisebound.noboot.Rd | 3 qgcomp-2.16.4/qgcomp/man/qgcomp.cch.noboot.Rd | 1 qgcomp-2.16.4/qgcomp/man/qgcomp.cox.boot.Rd | 7 qgcomp-2.16.4/qgcomp/man/qgcomp.cox.noboot.Rd | 3 qgcomp-2.16.4/qgcomp/man/qgcomp.glm.boot.Rd | 2 qgcomp-2.16.4/qgcomp/man/qgcomp.glm.ee.Rd |only qgcomp-2.16.4/qgcomp/man/qgcomp.glm.noboot.Rd | 1 qgcomp-2.16.4/qgcomp/man/qgcomp.hurdle.boot.Rd | 1 qgcomp-2.16.4/qgcomp/man/qgcomp.hurdle.noboot.Rd | 1 qgcomp-2.16.4/qgcomp/man/qgcomp.multinomial.boot.Rd | 14 - qgcomp-2.16.4/qgcomp/man/qgcomp.multinomial.noboot.Rd | 7 qgcomp-2.16.4/qgcomp/man/qgcomp.partials.Rd | 1 qgcomp-2.16.4/qgcomp/man/qgcomp.survcurve.boot.Rd | 16 - qgcomp-2.16.4/qgcomp/man/qgcomp.zi.boot.Rd | 1 qgcomp-2.16.4/qgcomp/man/qgcomp.zi.noboot.Rd | 1 qgcomp-2.16.4/qgcomp/man/se_comb.Rd | 2 qgcomp-2.16.4/qgcomp/tests/test_basics.R | 4 qgcomp-2.16.4/qgcomp/tests/test_ee.R |only qgcomp-2.16.4/qgcomp/vignettes/qgcomp-advanced-vignette.Rmd |only qgcomp-2.16.4/qgcomp/vignettes/qgcomp-basic-vignette.Rmd |only 47 files changed, 401 insertions(+), 147 deletions(-)
Title: Analytical Tools for Radiation Oncology
Description: Designed for the import, analysis, and visualization of dosimetric and volumetric data in Radiation Oncology, the tools herein enable import of dose-volume histogram information from multiple treatment planning system platforms and 3D structural representations and dosimetric information from 'DICOM-RT' files. These tools also enable subsequent visualization and statistical analysis of these data.
Author: Reid F. Thompson [aut, cre]
Maintainer: Reid F. Thompson <reid.thompson@gmail.com>
Diff between RadOnc versions 1.1.8 dated 2022-10-04 and 1.1.9 dated 2025-01-22
RadOnc-1.1.8/RadOnc/build/vignette.rds |only RadOnc-1.1.9/RadOnc/DESCRIPTION | 16 ++++++++++------ RadOnc-1.1.9/RadOnc/MD5 | 15 +++++++-------- RadOnc-1.1.9/RadOnc/R/DVH.list.R | 2 +- RadOnc-1.1.9/RadOnc/R/structure.list.R | 2 +- RadOnc-1.1.9/RadOnc/build/partial.rdb |binary RadOnc-1.1.9/RadOnc/inst/CITATION | 14 ++++++-------- RadOnc-1.1.9/RadOnc/man/plot-methods.Rd | 2 +- RadOnc-1.1.9/RadOnc/man/read.DICOM.RT.Rd | 4 ++-- 9 files changed, 28 insertions(+), 27 deletions(-)
Title: Interpolation and Extrapolation for Three Dimensions of
Biodiversity
Description: Biodiversity is a multifaceted concept covering different levels of organization from
genes to ecosystems. 'iNEXT.3D' extends 'iNEXT' to include three dimensions (3D)
of biodiversity, i.e., taxonomic diversity (TD), phylogenetic diversity (PD) and functional
diversity (FD). This package provides functions to compute standardized 3D diversity estimates
with a common sample size or sample coverage. A unified framework based on Hill numbers
and their generalizations (Hill-Chao numbers) are used to quantify 3D. All 3D estimates
are in the same units of species/lineage equivalents and can be meaningfully compared.
The package features size- and coverage-based rarefaction and extrapolation sampling
curves to facilitate rigorous comparison of 3D diversity across individual assemblages.
Asymptotic 3D diversity estimates are also provided. See Chao et al. (2021)
<doi:10.1111/2041-210X.13682> for more details.
Author: Anne Chao [aut, cre],
KaiHsiang Hu [ctb]
Maintainer: Anne Chao <chao@stat.nthu.edu.tw>
Diff between iNEXT.3D versions 1.0.6 dated 2024-08-22 and 1.0.7 dated 2025-01-22
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS | 3 ++- R/ChaoUtility_Fun.R | 23 ++++++++++++++++++++--- R/CommonFun.R | 7 +++++-- R/PD_Fun.R | 4 ++++ inst/doc/Introduction.pdf |binary 7 files changed, 40 insertions(+), 15 deletions(-)