Title: Categorical Functional Data Analysis
Description: Package for the analysis of categorical functional data.
The main purpose is to compute an encoding (real functional variable) for each state <doi:10.3390/math9233074>.
It also provides functions to perform basic statistical analysis on categorical functional data.
Author: Cristian Preda [aut],
Quentin Grimonprez [aut, cre],
Vincent Vandewalle [ctb]
Maintainer: Quentin Grimonprez <quentingrim@yahoo.fr>
Diff between cfda versions 0.12.0 dated 2024-11-20 and 0.12.1 dated 2025-01-24
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 5 ++++- R/encoding.R | 5 ++++- inst/doc/cfda.html | 6 +++--- 5 files changed, 19 insertions(+), 13 deletions(-)
Title: Store and Retrieve Data.frames in a Git Repository
Description: The git2rdata package is an R package for writing and reading
dataframes as plain text files. A metadata file stores important
information. 1) Storing metadata allows to maintain the classes of
variables. By default, git2rdata optimizes the data for file storage.
The optimization is most effective on data containing factors. The
optimization makes the data less human readable. The user can turn
this off when they prefer a human readable format over smaller files.
Details on the implementation are available in vignette("plain_text",
package = "git2rdata"). 2) Storing metadata also allows smaller row
based diffs between two consecutive commits. This is a useful feature
when storing data as plain text files under version control. Details
on this part of the implementation are available in
vignette("version_control", package = "git2rdata"). Although we
envisioned git2rdata with a git workflow in mind, you can use it in
combination with other version control systems like subversion [...truncated...]
Author: Thierry Onkelinx [aut, cre] ),
Floris Vanderhaeghe [ctb] ),
Peter Desmet [ctb] ),
Els Lommelen [ctb] ),
Research Institute for Nature and Forest [cph, fnd]
Maintainer: Thierry Onkelinx <thierry.onkelinx@inbo.be>
Diff between git2rdata versions 0.4.1 dated 2024-09-06 and 0.5.0 dated 2025-01-24
DESCRIPTION | 22 +-- MD5 | 100 +++++++------- NAMESPACE | 2 NEWS.md | 7 + R/data_package.R |only R/meta.R | 53 ++++++- R/read_vc.R | 55 ++++---- R/recent_commit.R | 12 + R/update_metadata.R | 23 ++- R/upgrade_data.R | 11 + R/write_vc.R | 36 ++++- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 6 inst/doc/efficiency.R | 150 ++++++++++----------- inst/doc/efficiency.html | 34 ++-- inst/doc/metadata.html | 60 ++++---- inst/doc/plain_text.R | 2 inst/doc/plain_text.html | 112 ++++++++-------- inst/doc/split_by.R | 70 +++++----- inst/doc/split_by.html | 6 inst/doc/version_control.R | 4 inst/doc/version_control.html | 76 +++++------ inst/doc/workflow.R | 104 +++++++-------- inst/doc/workflow.html | 61 ++++---- man/data_package.Rd |only man/display_metadata.Rd | 1 man/list_data.Rd | 1 man/meta.Rd | 15 +- man/prune_meta.Rd | 1 man/read_vc.Rd | 6 man/recent_commit.Rd | 12 + man/relabel.Rd | 1 man/rename_variable.Rd | 1 man/rm_data.Rd | 1 man/update_metadata.Rd | 13 + man/upgrade_data.Rd | 11 + man/verify_vc.Rd | 1 man/write_vc.Rd | 22 ++- tests/testthat/setup_test_data.R | 12 + tests/testthat/test_a_basics.R | 205 +++++++++++++++++------------- tests/testthat/test_a_coalesce.R |only tests/testthat/test_b_is_git2rmeta.R | 12 + tests/testthat/test_b_prune.R | 15 +- tests/testthat/test_b_update.R | 29 ++-- tests/testthat/test_b_verify_vc.R | 3 tests/testthat/test_c_git.R | 78 +++-------- tests/testthat/test_d_description.R | 38 ++++- tests/testthat/test_d_recent_commit.R | 6 tests/testthat/test_e_data_package.R |only tests/testthat/test_e_validate_metadata.R | 12 + tests/testthat/test_f_split_by.R | 11 + tests/testthat/test_g_rename_variable.R | 11 + 53 files changed, 893 insertions(+), 631 deletions(-)
Title: Imputation Procedures and Quality Tests for Fuzzy Data
Description: Special procedures for the imputation of missing fuzzy numbers are still underdeveloped. The goal of the package is to provide the new d-imputation method (DIMP for short, Romaniuk, M. and Grzegorzewski, P. (2023) "Fuzzy Data Imputation with DIMP and FGAIN" RB/23/2023) and covert some classical ones applied in R packages ('missForest','miceRanger','knn') for use with fuzzy datasets. Additionally, specially tailored benchmarking tests are provided to check and compare these imputation procedures with fuzzy datasets.
Author: Maciej Romaniuk [cre, aut]
Maintainer: Maciej Romaniuk <mroman@ibspan.waw.pl>
Diff between FuzzyImputationTest versions 0.3.8 dated 2024-12-19 and 0.4.0 dated 2025-01-24
FuzzyImputationTest-0.3.8/FuzzyImputationTest/R/ValueAmbiguityArea.R |only FuzzyImputationTest-0.4.0/FuzzyImputationTest/DESCRIPTION | 6 - FuzzyImputationTest-0.4.0/FuzzyImputationTest/MD5 | 19 ++- FuzzyImputationTest-0.4.0/FuzzyImputationTest/R/CalculateFuzzyMeasures.R | 3 FuzzyImputationTest-0.4.0/FuzzyImputationTest/R/CalculateFuzzyMeasuresSingleVar.R | 8 + FuzzyImputationTest-0.4.0/FuzzyImputationTest/R/MeasureCharacteristic.R |only FuzzyImputationTest-0.4.0/FuzzyImputationTest/R/ValueAmbiguityAreaWidth.R |only FuzzyImputationTest-0.4.0/FuzzyImputationTest/R/utils.R | 2 FuzzyImputationTest-0.4.0/FuzzyImputationTest/man/CalculateFuzzyMeasures.Rd | 3 FuzzyImputationTest-0.4.0/FuzzyImputationTest/tests/testthat/_snaps/CalculateFuzzyMeasures.md | 16 +++ FuzzyImputationTest-0.4.0/FuzzyImputationTest/tests/testthat/_snaps/ImputationTests.md | 16 +++ FuzzyImputationTest-0.4.0/FuzzyImputationTest/tests/testthat/_snaps/MethodsComparison.md | 48 ++++++++++ 12 files changed, 106 insertions(+), 15 deletions(-)
More information about FuzzyImputationTest at CRAN
Permanent link
Title: Detection and Attribution Analysis of Climate Change
Description: Conduct detection and attribution of climate change using methods including optimal fingerprinting via
generalized total least squares or estimating equation approach from Ma et al. (2023) <doi:10.1175/JCLI-D-22-0681.1>.
Provide shrinkage estimators for covariance matrix from Ledoit and Wolf (2004) <doi:10.1016/S0047-259X(03)00096-4>,
and Ledoit and Wolf (2017) <doi:10.2139/ssrn.2383361>.
Author: Yan Li [aut, cre],
Kun Chen [aut],
Jun Yan [aut]
Maintainer: Yan Li <yan.4.li@uconn.edu>
Diff between dacc versions 0.0-5 dated 2024-09-20 and 0.0-6 dated 2025-01-24
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- R/fingerprint.R | 2 +- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: 'AWS Python SDK' ('boto3') for R
Description: Fork-safe, raw access to the 'Amazon Web Services' ('AWS') 'SDK' via the 'boto3' 'Python' module, and convenient helper functions to query the 'Simple Storage Service' ('S3') and 'Key Management Service' ('KMS'), partial support for 'IAM', the 'Systems Manager Parameter Store' and 'Secrets Manager'.
Author: Gergely Daroczi [aut, cre] ,
System1 [fnd]
Maintainer: Gergely Daroczi <daroczig@rapporter.net>
Diff between botor versions 0.4.0 dated 2023-03-12 and 0.4.1 dated 2025-01-24
DESCRIPTION | 10 +++--- MD5 | 47 ++++++++++++++++---------------- NEWS.md | 23 +++++++++++---- R/botor.R | 47 ++++++++++++++++++++++---------- R/kinesis.R | 46 +++++++++++++++++++------------ R/kms.R | 20 ++++++++++--- R/s3.R | 48 ++++++++++++++++++++++----------- R/sm.R | 40 +++++++++++++-------------- R/utils.R | 7 +++- R/zzz.R | 2 - README.md | 6 ++-- inst/tests/testthat/test-load.R | 15 ++++++++-- man/botor_client.Rd | 20 ++++++++++--- man/coerce_bytes_literals_to_string.Rd | 5 ++- man/figures |only man/kinesis_get_records.Rd | 7 +++- man/kinesis_get_shard_iterator.Rd | 9 ++++-- man/kinesis_put_record.Rd | 13 ++++++-- man/kms_encrypt.Rd | 9 ++++-- man/kms_encrypt_file.Rd | 9 ++++-- man/kms_generate_data_key.Rd | 14 +++++++-- man/s3.Rd | 5 ++- man/s3_ls.Rd | 8 ++++- man/s3_put_object_tagging.Rd | 13 ++++++-- man/s3_write.Rd | 12 ++++++-- 25 files changed, 287 insertions(+), 148 deletions(-)
Title: Preparation, Checking and Post-Processing Data for PK/PD
Modeling
Description: Efficient tools for preparation, checking and post-processing of data in PK/PD (pharmacokinetics/pharmacodynamics) modeling, with focus on use of Nonmem. Attention is paid to ensure consistency, traceability, and Nonmem compatibility of Data. Rigorously checks final Nonmem datasets. Implemented in 'data.table', but easily integrated with 'base' and 'tidyverse'.
Author: Philip Delff [aut, cre],
Brian Reilly [ctb],
Eric Anderson [ctb],
Matthew Fidler [ctb]
Maintainer: Philip Delff <philip@delff.dk>
Diff between NMdata versions 0.1.8 dated 2024-10-31 and 0.1.9 dated 2025-01-24
NMdata-0.1.8/NMdata/R/addOmegaCorr.R |only NMdata-0.1.8/NMdata/inst/examples/nonmem/xgxr132.msf |only NMdata-0.1.8/NMdata/inst/examples/nonmem/xgxr132.xml |only NMdata-0.1.8/NMdata/inst/examples/nonmem/xgxr132_ETAS.msf |only NMdata-0.1.9/NMdata/DESCRIPTION | 18 NMdata-0.1.9/NMdata/MD5 | 130 +++-- NMdata-0.1.9/NMdata/NAMESPACE | 2 NMdata-0.1.9/NMdata/NEWS.md | 77 +++ NMdata-0.1.9/NMdata/R/NMcheckData.R | 41 + NMdata-0.1.9/NMdata/R/NMgenText.R | 27 - NMdata-0.1.9/NMdata/R/NMorderColumns.R | 13 NMdata-0.1.9/NMdata/R/NMreadExt.R | 14 NMdata-0.1.9/NMdata/R/NMreadInits.R |only NMdata-0.1.9/NMdata/R/NMreadParsText.R | 237 +++++++--- NMdata-0.1.9/NMdata/R/NMrelate.R | 3 NMdata-0.1.9/NMdata/R/NMrelateOne.R | 26 - NMdata-0.1.9/NMdata/R/NMscanInput.R | 2 NMdata-0.1.9/NMdata/R/NMwriteData.R | 21 NMdata-0.1.9/NMdata/R/NMwriteSection.R | 4 NMdata-0.1.9/NMdata/R/NMwriteSectionOne.R | 30 - NMdata-0.1.9/NMdata/R/addCor.R |only NMdata-0.1.9/NMdata/R/addParType.R | 2 NMdata-0.1.9/NMdata/R/addTAPD.R | 28 + NMdata-0.1.9/NMdata/R/addTableStep.R | 4 NMdata-0.1.9/NMdata/R/compareCols.R | 6 NMdata-0.1.9/NMdata/R/dt2mat.R | 8 NMdata-0.1.9/NMdata/R/flagsCount.R | 7 NMdata-0.1.9/NMdata/R/fnAppend.R | 40 + NMdata-0.1.9/NMdata/R/getLines.R | 11 NMdata-0.1.9/NMdata/R/mat2dt.R | 4 NMdata-0.1.9/NMdata/R/searchColRow.R | 2 NMdata-0.1.9/NMdata/R/zzz.R | 2 NMdata-0.1.9/NMdata/man/NMgenText.Rd | 16 NMdata-0.1.9/NMdata/man/NMreadInits.Rd |only NMdata-0.1.9/NMdata/man/NMreadParsText.Rd | 61 ++ NMdata-0.1.9/NMdata/man/NMwriteData.Rd | 6 NMdata-0.1.9/NMdata/man/NMwriteSection.Rd | 2 NMdata-0.1.9/NMdata/man/addCor.Rd |only NMdata-0.1.9/NMdata/man/addOmegaCorr.Rd | 23 NMdata-0.1.9/NMdata/man/addTAPD.Rd | 15 NMdata-0.1.9/NMdata/man/count_ij.Rd |only NMdata-0.1.9/NMdata/man/flagsCount.Rd | 3 NMdata-0.1.9/NMdata/man/fnAppend.Rd | 13 NMdata-0.1.9/NMdata/man/getLines.Rd |only NMdata-0.1.9/NMdata/man/initsToExt.Rd |only NMdata-0.1.9/NMdata/man/itriag.Rd |only NMdata-0.1.9/NMdata/man/jtriag.Rd |only NMdata-0.1.9/NMdata/man/triagSize.Rd |only NMdata-0.1.9/NMdata/tests/testthat/testData/nonmem/xgxr032.mod | 2 NMdata-0.1.9/NMdata/tests/testthat/testData/nonmem/xgxr032_spaces.mod |only NMdata-0.1.9/NMdata/tests/testthat/testData/nonmem/xgxr133.mod |only NMdata-0.1.9/NMdata/tests/testthat/testReference/NMcheckDataFile_01.rds |binary NMdata-0.1.9/NMdata/tests/testthat/testReference/NMcheckData_22.rds |only NMdata-0.1.9/NMdata/tests/testthat/testReference/NMreadInits_01_elems.rds |only NMdata-0.1.9/NMdata/tests/testthat/testReference/NMreadInits_01_lines.rds |only NMdata-0.1.9/NMdata/tests/testthat/testReference/NMreadInits_01_pars.rds |only NMdata-0.1.9/NMdata/tests/testthat/testReference/NMreadInits_02_elems.rds |only NMdata-0.1.9/NMdata/tests/testthat/testReference/NMreadInits_02_lines.rds |only NMdata-0.1.9/NMdata/tests/testthat/testReference/NMreadInits_02_pars.rds |only NMdata-0.1.9/NMdata/tests/testthat/testReference/NMreadInits_03_elems.rds |only NMdata-0.1.9/NMdata/tests/testthat/testReference/NMreadInits_03_lines.rds |only NMdata-0.1.9/NMdata/tests/testthat/testReference/NMreadInits_03_pars.rds |only NMdata-0.1.9/NMdata/tests/testthat/testReference/NMwriteSection_08.rds |only NMdata-0.1.9/NMdata/tests/testthat/testReference/addOmegaCorr_01.rds |only NMdata-0.1.9/NMdata/tests/testthat/testReference/compareCols_06.rds |only NMdata-0.1.9/NMdata/tests/testthat/testReference/fnAppend_03.rds |only NMdata-0.1.9/NMdata/tests/testthat/testReference/getLines_01.rds |only NMdata-0.1.9/NMdata/tests/testthat/testReference/searchColRow_01.rds |only NMdata-0.1.9/NMdata/tests/testthat/test_NMcheckData.R | 66 +- NMdata-0.1.9/NMdata/tests/testthat/test_NMgenText.R | 8 NMdata-0.1.9/NMdata/tests/testthat/test_NMorderColumns.R | 14 NMdata-0.1.9/NMdata/tests/testthat/test_NMreadInits.R |only NMdata-0.1.9/NMdata/tests/testthat/test_NMreadParText.R | 34 + NMdata-0.1.9/NMdata/tests/testthat/test_NMrelate.R | 1 NMdata-0.1.9/NMdata/tests/testthat/test_NMwriteData.R | 36 + NMdata-0.1.9/NMdata/tests/testthat/test_NMwriteSection.R | 24 + NMdata-0.1.9/NMdata/tests/testthat/test_addCor.R |only NMdata-0.1.9/NMdata/tests/testthat/test_compareCols.R | 17 NMdata-0.1.9/NMdata/tests/testthat/test_flags.R | 2 NMdata-0.1.9/NMdata/tests/testthat/test_fnAppend.R | 39 + NMdata-0.1.9/NMdata/tests/testthat/test_getLines.R |only NMdata-0.1.9/NMdata/tests/testthat/test_listMissings.R | 2 NMdata-0.1.9/NMdata/tests/testthat/test_mat2dt.R | 2 NMdata-0.1.9/NMdata/tests/testthat/test_searchColRow.R |only 84 files changed, 820 insertions(+), 325 deletions(-)
Title: Spatially Explicit Capture-Recapture
Description: Functions to estimate the density and size of a spatially
distributed animal population sampled with an array of passive detectors,
such as traps, or by searching polygons or transects. Models incorporating
distance-dependent detection are fitted by maximizing the likelihood.
Tools are included for data manipulation and model selection.
Author: Murray Efford [aut, cre] ,
Philipp Jund [ctb] ,
David Fletcher [ctb] ,
Yan Ru Choo [ctb]
Maintainer: Murray Efford <murray.efford@otago.ac.nz>
Diff between secr versions 5.1.0 dated 2024-11-04 and 5.2.0 dated 2025-01-24
DESCRIPTION | 8 MD5 | 94 ++++---- NAMESPACE | 4 NEWS | 22 + R/AIC.R | 11 R/Dsurface.R | 36 +-- R/addCovariates.R | 6 R/confint.secr.R | 45 ++- R/derivedDsurface.R |only R/derivedMS.R | 31 +- R/esa.R | 29 +- R/fastsecrloglik.R | 20 + R/generalsecrloglik.R | 20 + R/loglikhelperfn.R | 3 R/mask.check.R | 2 R/methods.R | 20 - R/modelAverage.R | 19 - R/predict.secr.R | 468 ++++++++++++++++++++-------------------- R/preparedata.R | 12 + R/pxi.R |only R/regionN.R | 76 ++++-- R/score.test.R | 35 +- R/secr.fit.R | 42 ++- R/split.capthist.R | 5 R/split.mask.R | 6 R/split.traps.R | 5 R/summary.secr.R | 5 R/utility.R | 82 ++++++- data/blackbear.RData |binary data/ovenbird.RData |binary data/ovensong.RData |binary data/possum.RData |binary data/secrdemo.RData |binary data/stoatDNA.RData |binary inst/doc/secr-datainput.pdf |binary inst/doc/secr-overview.Rmd | 22 + inst/doc/secr-overview.pdf |binary man/MCgof.Rd | 2 man/OVpossum.Rd | 13 - man/blackbear.Rd | 4 man/derivedDsurface.Rd |only man/derivedMS.Rd | 7 man/details.Rd | 70 ++++- man/predictDsurface.Rd | 16 + man/secr-package.Rd | 4 man/secr.fit.Rd | 13 - man/subset.mask.Rd | 2 src/trapping.cpp | 17 - tests/testthat/test-relativeD.R |only vignettes/secr-overview.Rmd | 22 + 50 files changed, 772 insertions(+), 526 deletions(-)
Title: Graph Community Detection Methods into Systematic Conservation
Planning
Description: An innovative tool-set that incorporates graph community detection
methods into systematic conservation planning. It is designed to
enhance spatial prioritization by focusing on the protection of
areas with high ecological connectivity. Unlike traditional
approaches that prioritize individual planning units, 'priorCON'
focuses on clusters of features that exhibit strong ecological
linkages. The 'priorCON' package is built upon the 'prioritizr'
package <doi:10.32614/CRAN.package.prioritizr>, using commercial
and open-source exact algorithm solvers that ensure optimal
solutions to prioritization problems.
Author: Christos Adam [aut, cre] ,
Aggeliki Doxa [aut] ,
Nikolaos Nagkoulis [aut] ,
Maria Papazekou [aut] ,
Antonios D. Mazaris [aut] ,
Stelios Katsanevakis [aut]
Maintainer: Christos Adam <econp266@econ.soc.uoc.gr>
Diff between priorCON versions 0.1.3 dated 2024-11-28 and 0.1.4 dated 2025-01-24
DESCRIPTION | 7 +-- MD5 | 18 ++++---- NAMESPACE | 7 +-- NEWS.md | 7 +++ R/functions_connect.R | 26 +++++++++-- README.md | 2 man/basic_scenario.Rd | 15 +++++- man/connectivity_scenario.Rd | 14 +++++- tests/testthat/test-basic_scenario.r | 51 ++++++++++++++++++----- tests/testthat/test-connectivity_scenario.r | 62 ++++++++++++++++++++-------- 10 files changed, 158 insertions(+), 51 deletions(-)
Title: Read, Plot and Analyse Output from the DEPONS Model
Description: Methods for analyzing population dynamics and movement tracks simulated using the DEPONS model <https://www.depons.eu> (v.3.0), for manipulating input raster files, shipping routes and for analyzing sound propagated from ships.
Author: Jacob Nabe-Nielsen [aut, cre],
Caitlin K. Frankish [aut],
Axelle Cordier [aut],
Florian G. Weller [aut]
Maintainer: Jacob Nabe-Nielsen <jnn@ecos.au.dk>
Diff between DEPONS2R versions 1.2.5 dated 2025-01-10 and 1.2.6 dated 2025-01-24
DESCRIPTION | 6 - MD5 | 30 +++--- NAMESPACE | 3 R/a-misc.R | 34 ++++--- R/blockdyn-methods.R | 19 ++-- R/dyn-methods.R | 11 +- R/parameter-methods.R | 4 R/ships_methods.R | 190 ++++++++++++++++++++++++++++++------------- R/track-methods.R | 1 man/check.DeponsShips.Rd | 55 +++++++++--- man/make.stationary.ships.Rd | 100 ++++++++++++++++------ man/read.DeponsBlockdyn.Rd | 12 ++ man/read.DeponsDyn.Rd | 9 -- man/read.DeponsParam.Rd | 3 man/shipdata.Rd | 38 +------- man/tick.to.time.Rd | 2 16 files changed, 337 insertions(+), 180 deletions(-)
Title: Spike-and-Slab Variational Bayes for Linear and Logistic
Regression
Description: Implements variational Bayesian algorithms to perform scalable variable selection for sparse, high-dimensional linear and logistic regression models. Features include a novel prioritized updating scheme, which uses a preliminary estimator of the variational means during initialization to generate an updating order prioritizing large, more relevant, coefficients. Sparsity is induced via spike-and-slab priors with either Laplace or Gaussian slabs. By default, the heavier-tailed Laplace density is used. Formal derivations of the algorithms and asymptotic consistency results may be found in Kolyan Ray and Botond Szabo (JASA 2020) and Kolyan Ray, Botond Szabo, and Gabriel Clara (NeurIPS 2020).
Author: Gabriel Clara [aut, cre],
Botond Szabo [aut],
Kolyan Ray [aut]
Maintainer: Gabriel Clara <gabriel.j.clara@gmail.com>
Diff between sparsevb versions 0.1.0 dated 2021-01-15 and 0.1.1 dated 2025-01-24
DESCRIPTION | 17 ++++++++--------- MD5 | 8 ++++---- src/Makevars | 2 +- src/Makevars.win | 6 +++--- src/RcppExports.cpp | 5 +++++ 5 files changed, 21 insertions(+), 17 deletions(-)
Title: Logistic Mapping
Description: Set of tools for mapping of categorical response variables based on principal component analysis (pca) and multidimensional unfolding (mdu).
Author: Mark de Rooij [aut, cre, cph],
Frank Busing [aut, cph],
Juan Claramunt Gonzalez [aut]
Maintainer: Mark de Rooij <rooijm@fsw.leidenuniv.nl>
Diff between lmap versions 0.1.3 dated 2024-12-11 and 0.2.4 dated 2025-01-24
lmap-0.1.3/lmap/R/esm.R |only lmap-0.1.3/lmap/R/summary.esm.R |only lmap-0.1.3/lmap/man/esm.Rd |only lmap-0.1.3/lmap/man/summary.esm.Rd |only lmap-0.2.4/lmap/DESCRIPTION | 10 lmap-0.2.4/lmap/MD5 | 153 ++- lmap-0.2.4/lmap/NAMESPACE | 43 lmap-0.2.4/lmap/R/bootstrap.clmdu.R |only lmap-0.2.4/lmap/R/bootstrap.clpca.R |only lmap-0.2.4/lmap/R/bootstrap.lmdu.R |only lmap-0.2.4/lmap/R/bootstrap.lpca.R |only lmap-0.2.4/lmap/R/bootstrap.mcd.R |only lmap-0.2.4/lmap/R/bootstrap.mrrr.R |only lmap-0.2.4/lmap/R/bootstrap.mru.R |only lmap-0.2.4/lmap/R/clmdu.R | 622 ++++++------ lmap-0.2.4/lmap/R/clpca.R | 523 +++++----- lmap-0.2.4/lmap/R/diabetes.R |only lmap-0.2.4/lmap/R/dpes.R |only lmap-0.2.4/lmap/R/fastmbu.R | 1 lmap-0.2.4/lmap/R/fastmru.R | 17 lmap-0.2.4/lmap/R/kieskompas.R |only lmap-0.2.4/lmap/R/liver.R |only lmap-0.2.4/lmap/R/lmdu.R | 4 lmap-0.2.4/lmap/R/lpca.R | 455 ++++----- lmap-0.2.4/lmap/R/make.df.for.varlabels.R |only lmap-0.2.4/lmap/R/make.dfs.for.X.R |only lmap-0.2.4/lmap/R/mcd1.R |only lmap-0.2.4/lmap/R/mcd2.R |only lmap-0.2.4/lmap/R/mlr.R |only lmap-0.2.4/lmap/R/mrrr.R |only lmap-0.2.4/lmap/R/mru.R | 74 + lmap-0.2.4/lmap/R/nesda.R |only lmap-0.2.4/lmap/R/oos.comparison.R |only lmap-0.2.4/lmap/R/plot.bootstrap.R |only lmap-0.2.4/lmap/R/plot.clmdu.R | 128 -- lmap-0.2.4/lmap/R/plot.clpca.R | 120 -- lmap-0.2.4/lmap/R/plot.lmdu.R | 118 -- lmap-0.2.4/lmap/R/plot.lpca.R | 9 lmap-0.2.4/lmap/R/plot.mrrr.R |only lmap-0.2.4/lmap/R/plot.mru.R | 154 +-- lmap-0.2.4/lmap/R/plot.trioscale.R |only lmap-0.2.4/lmap/R/predict.lpca.R | 130 +- lmap-0.2.4/lmap/R/predict.mlr.R |only lmap-0.2.4/lmap/R/predict.mrrr.R |only lmap-0.2.4/lmap/R/predict.mru.R | 102 +- lmap-0.2.4/lmap/R/procrustes.R |only lmap-0.2.4/lmap/R/procx.R | 84 + lmap-0.2.4/lmap/R/read_drugdata.R |only lmap-0.2.4/lmap/R/read_isspdata_peb.R |only lmap-0.2.4/lmap/R/summary.mcd.R |only lmap-0.2.4/lmap/R/summary.mlr.R |only lmap-0.2.4/lmap/R/summary.mrrr.R |only lmap-0.2.4/lmap/R/summary.mru.R | 62 - lmap-0.2.4/lmap/R/summary.trioscale.R |only lmap-0.2.4/lmap/R/supportPlotlpca.R | 1042 +++++++++------------ lmap-0.2.4/lmap/R/theme_lmda.R |only lmap-0.2.4/lmap/R/trioscale.R |only lmap-0.2.4/lmap/data/diabetes.rda |only lmap-0.2.4/lmap/data/dpes.rda |only lmap-0.2.4/lmap/data/kieskompas.rda |only lmap-0.2.4/lmap/data/liver.rda |only lmap-0.2.4/lmap/data/nesda.rda |only lmap-0.2.4/lmap/man/bootstrap.clmdu.Rd |only lmap-0.2.4/lmap/man/bootstrap.clpca.Rd |only lmap-0.2.4/lmap/man/bootstrap.lmdu.Rd |only lmap-0.2.4/lmap/man/bootstrap.lpca.Rd |only lmap-0.2.4/lmap/man/bootstrap.mcd.Rd |only lmap-0.2.4/lmap/man/bootstrap.mrrr.Rd |only lmap-0.2.4/lmap/man/bootstrap.mru.Rd |only lmap-0.2.4/lmap/man/clpca.Rd | 7 lmap-0.2.4/lmap/man/diabetes.Rd |only lmap-0.2.4/lmap/man/dpes.Rd |only lmap-0.2.4/lmap/man/fastmru.Rd | 3 lmap-0.2.4/lmap/man/ggplot2-ggproto.Rd |only lmap-0.2.4/lmap/man/kieskompas.Rd |only lmap-0.2.4/lmap/man/liver.Rd |only lmap-0.2.4/lmap/man/lpca.Rd | 3 lmap-0.2.4/lmap/man/make.df.for.varlabels.Rd |only lmap-0.2.4/lmap/man/make.dfs.for.X.Rd |only lmap-0.2.4/lmap/man/mcd1.Rd |only lmap-0.2.4/lmap/man/mcd2.Rd |only lmap-0.2.4/lmap/man/mlr.Rd |only lmap-0.2.4/lmap/man/mrrr.Rd |only lmap-0.2.4/lmap/man/mru.Rd | 14 lmap-0.2.4/lmap/man/nesda.Rd |only lmap-0.2.4/lmap/man/oos.comparison.Rd |only lmap-0.2.4/lmap/man/plot.clmdu.Rd | 8 lmap-0.2.4/lmap/man/plot.clpca.Rd | 8 lmap-0.2.4/lmap/man/plot.lmdu.Rd | 8 lmap-0.2.4/lmap/man/plot.lpca.Rd | 5 lmap-0.2.4/lmap/man/plot.mrrr.Rd |only lmap-0.2.4/lmap/man/plot.mru.Rd | 8 lmap-0.2.4/lmap/man/plot.trioscale.Rd |only lmap-0.2.4/lmap/man/predict.lpca.Rd | 1 lmap-0.2.4/lmap/man/predict.mlr.Rd |only lmap-0.2.4/lmap/man/predict.mrrr.Rd |only lmap-0.2.4/lmap/man/predict.mru.Rd | 2 lmap-0.2.4/lmap/man/procrustes1.Rd |only lmap-0.2.4/lmap/man/procx.Rd |only lmap-0.2.4/lmap/man/read_drugdata.Rd |only lmap-0.2.4/lmap/man/read_isspdata_peb.Rd |only lmap-0.2.4/lmap/man/summary.mcd.Rd |only lmap-0.2.4/lmap/man/summary.mlr.Rd |only lmap-0.2.4/lmap/man/summary.mrrr.Rd |only lmap-0.2.4/lmap/man/summary.mru.Rd | 4 lmap-0.2.4/lmap/man/summary.trioscale.Rd |only lmap-0.2.4/lmap/man/theme_lmda.Rd |only lmap-0.2.4/lmap/man/trioscale.Rd |only lmap-0.2.4/lmap/src/bigmdu.c |only lmap-0.2.4/lmap/src/flib.c | 1314 +++++++++++++++++++++++++-- lmap-0.2.4/lmap/src/flib.h | 47 lmap-0.2.4/lmap/src/fmdu.h | 8 lmap-0.2.4/lmap/src/init.c | 4 lmap-0.2.4/lmap/src/lmap.h | 6 lmap-0.2.4/lmap/src/mulnomresmduneg.c | 4 lmap-0.2.4/lmap/src/resmduneg.c | 46 116 files changed, 3264 insertions(+), 2087 deletions(-)
Title: Spatially Explicit Capture-Recapture by Inverse Prediction
Description: Estimates the density of a spatially distributed animal population
sampled with an array of passive detectors, such as traps. Models incorporating
distance-dependent detection are fitted by simulation and inverse prediction
as proposed by Efford (2004) <doi:10.1111/j.0030-1299.2004.13043.x>.
Author: Murray Efford [aut, cre]
Maintainer: Murray Efford <murray.efford@otago.ac.nz>
Diff between ipsecr versions 1.4.1 dated 2024-01-15 and 1.4.2 dated 2025-01-24
DESCRIPTION | 8 ++-- MD5 | 28 +++++++------- NEWS | 8 ++++ R/ipsecr.fit.R | 4 +- R/plot.ipsecr.R | 4 +- R/simCH.R | 5 +- R/utility.R | 82 ++----------------------------------------- inst/doc/ipsecr-vignette.pdf |binary man/ipsecr-internal.Rd | 12 +++--- man/ipsecr-package.Rd | 14 +++---- man/ipsecr.fit.Rd | 8 ++-- man/ipsecrdemo.Rd | 2 - man/plot.ipsecr.Rd | 2 - man/plotProxy.Rd | 2 - man/predict.ipsecr.Rd | 4 +- 15 files changed, 58 insertions(+), 125 deletions(-)
Title: Group Elastic Net Regularized GLMs and GAMs
Description: Efficient algorithms for fitting generalized linear and additive models with group elastic net penalties as described in Helwig (2024) <doi:10.1080/10618600.2024.2362232>. Implements group LASSO, group MCP, and group SCAD with an optional group ridge penalty. Computes the regularization path for linear regression (gaussian), multivariate regression (multigaussian), logistic regression (binomial), multinomial logistic regression (multinomial), log-linear count regression (poisson and negative.binomial), and log-linear continuous regression (gamma and inverse gaussian). Supports default and formula methods for model specification, k-fold cross-validation for tuning the regularization parameters, and nonparametric regression via tensor product reproducing kernel (smoothing spline) basis function expansion.
Author: Nathaniel E. Helwig [aut, cre]
Maintainer: Nathaniel E. Helwig <helwig@umn.edu>
Diff between grpnet versions 0.6 dated 2024-10-11 and 0.7 dated 2025-01-24
ChangeLog | 35 +++++++ DESCRIPTION | 10 +- MD5 | 58 ++++++------ NAMESPACE | 4 R/R_grpnet_binomial.R | 4 R/R_grpnet_gamma.R | 4 R/R_grpnet_gaussian.R | 4 R/R_grpnet_invgaus.R | 4 R/R_grpnet_multigaus.R |only R/R_grpnet_multinom.R | 4 R/R_grpnet_negbin.R | 4 R/R_grpnet_poisson.R | 4 R/coef.grpnet.R | 6 - R/cv.grpnet.default.R | 210 ++++++++++++++++++++++++++++++++++++++++++++--- R/family.grpnet.R | 6 - R/grpnet.R | 4 R/grpnet.default.R | 159 +++++++++++++++++++++++++++++++++-- R/grpnet.formula.R | 12 +- R/predict.grpnet.R | 47 +++++----- R/rk.R | 25 ++--- build/partial.rdb |binary man/coef.Rd | 2 man/cv.grpnet.Rd | 19 ++++ man/family.grpnet.Rd | 5 - man/grpnet.Rd | 37 +++++++- man/internals-grpnet.Rd | 7 + man/plot.grpnet.Rd | 2 man/predict.cv.grpnet.Rd | 23 +++++ man/predict.grpnet.Rd | 6 - src/grpnet_init.c | 2 src/grpnet_multigaus.f90 |only 31 files changed, 577 insertions(+), 130 deletions(-)
Title: Read/Write, Analyze, and Visualize 'BIOM' Data
Description: A toolkit for working with Biological Observation Matrix ('BIOM') files.
Read/write all 'BIOM' formats. Compute rarefaction, alpha diversity, and
beta diversity (including 'UniFrac'). Summarize counts by taxonomic level.
Subset based on metadata. Generate visualizations and statistical analyses.
CPU intensive operations are coded in C for speed.
Author: Daniel P. Smith [aut, cre] ,
Alkek Center for Metagenomics and Microbiome Research [cph, fnd]
Maintainer: Daniel P. Smith <dansmith01@gmail.com>
Diff between rbiom versions 2.0.10 dated 2025-01-19 and 2.0.13 dated 2025-01-24
DESCRIPTION | 23 - MD5 | 66 ++-- NAMESPACE | 11 R/bdiv_table.r | 74 ++--- R/boxplot_stats.r | 34 +- R/clustering.r | 12 R/convert.r | 164 +++++------ R/documentation.r | 3 R/rarefy.r | 16 - R/read_biom.r | 14 - R/stats_emmeans.r | 62 ++++ R/stats_table.r | 1 R/utils.r | 12 R/validate.r | 9 R/write_biom.r | 70 ++--- R/zzz.r | 29 +- README.md | 4 man/bdiv_clusters.Rd | 10 man/bdiv_stats.Rd | 1 man/bdiv_table.Rd | 6 man/convert_to_SE.Rd |only man/documentation_default.Rd | 3 man/taxa_clusters.Rd | 4 src/beta_div.c | 154 +++++------ src/get.c |only src/get.h |only src/init.c | 8 src/pair.h |only src/rarefy.c | 139 ++++++--- src/unifrac.c | 532 +++++++++++++++++++++----------------- tests/testthat/test-bdiv_table.r | 41 ++ tests/testthat/test-boxplot.r | 9 tests/testthat/test-convert.r | 55 ++- tests/testthat/test-read_biom.r | 14 - tests/testthat/test-stats_table.r | 2 tests/testthat/test-write_biom.r | 9 36 files changed, 934 insertions(+), 657 deletions(-)
Title: R Interface to 'IGN' Web Services
Description: Automatic open data acquisition from resources of IGN
('Institut National de Information Geographique et forestiere')
(<https://www.ign.fr/>). Available datasets include various types of
raster and vector data, such as digital elevation models, state
borders, spatial databases, cadastral parcels, and more. There also
access to point clouds data ('LIDAR') and specifics API
(<https://apicarto.ign.fr/api/doc/>).
Author: Paul Carteron [aut, cre]
Maintainer: Paul Carteron <carteronpaul@gmail.com>
Diff between happign versions 0.3.1 dated 2024-09-03 and 0.3.2 dated 2025-01-24
happign-0.3.1/happign/tests/testthat/get_apicarto_cadastre/apicarto.ign.fr/api/cadastre/parcelle-156949.R |only happign-0.3.1/happign/tests/testthat/get_apicarto_cadastre/apicarto.ign.fr/api/cadastre/parcelle-1b1baa.R |only happign-0.3.1/happign/tests/testthat/get_apicarto_cadastre/apicarto.ign.fr/api/cadastre/parcelle-24b05a.R |only happign-0.3.1/happign/tests/testthat/get_apicarto_cadastre/apicarto.ign.fr/api/cadastre/parcelle-2fd566.R |only happign-0.3.1/happign/tests/testthat/get_apicarto_cadastre/apicarto.ign.fr/api/cadastre/parcelle-349fc2.R |only happign-0.3.1/happign/tests/testthat/get_apicarto_cadastre/apicarto.ign.fr/api/cadastre/parcelle-3cdc11.R |only happign-0.3.1/happign/tests/testthat/get_apicarto_cadastre/apicarto.ign.fr/api/cadastre/parcelle-56b8d1.R |only happign-0.3.1/happign/tests/testthat/get_apicarto_cadastre/apicarto.ign.fr/api/cadastre/parcelle-ec5c6a.R |only happign-0.3.1/happign/tests/testthat/get_apicarto_rpg/apicarto.ign.fr/api/rpg/v1-c0ba08.R |only happign-0.3.1/happign/tests/testthat/get_apicarto_rpg/apicarto.ign.fr/api/rpg/v2-5df1f9.R |only happign-0.3.1/happign/tests/testthat/get_apicarto_rpg/apicarto.ign.fr/api/rpg/v2-83136d.R |only happign-0.3.1/happign/tests/testthat/get_apicarto_rpg/apicarto.ign.fr/api/rpg/v2-a9a80f.R |only happign-0.3.1/happign/tests/testthat/get_apicarto_rpg/apicarto.ign.fr/api/rpg/v2-bedfcd.R |only happign-0.3.1/happign/tests/testthat/get_apicarto_rpg/apicarto.ign.fr/api/rpg/v2-fbf477.R |only happign-0.3.1/happign/vignettes/unnamed-chunk-8-1.png |only happign-0.3.2/happign/DESCRIPTION | 8 happign-0.3.2/happign/MD5 | 69 +-- happign-0.3.2/happign/NAMESPACE | 3 happign-0.3.2/happign/NEWS.md | 16 happign-0.3.2/happign/R/data.R | 15 happign-0.3.2/happign/R/get_apicarto_cadastre.R | 20 happign-0.3.2/happign/R/get_apicarto_rpg.R | 168 ++++++- happign-0.3.2/happign/R/get_iso.R | 5 happign-0.3.2/happign/R/get_wms_raster.R | 2 happign-0.3.2/happign/data/com_2024.rda |only happign-0.3.2/happign/inst/doc/Getting_started.Rmd | 114 ++--- happign-0.3.2/happign/inst/doc/Getting_started.html | 165 ++++--- happign-0.3.2/happign/man/com_2024.Rd |only happign-0.3.2/happign/man/get_apicarto_cadastre.Rd | 14 happign-0.3.2/happign/man/get_apicarto_rpg.Rd | 26 - happign-0.3.2/happign/tests/testthat/get_apicarto_cadastre/apicarto.ign.fr/api/cadastre/parcelle-454d5f.R |only happign-0.3.2/happign/tests/testthat/get_apicarto_cadastre/apicarto.ign.fr/api/cadastre/parcelle-762292.R |only happign-0.3.2/happign/tests/testthat/get_apicarto_cadastre/apicarto.ign.fr/api/cadastre/parcelle-820ece.R |only happign-0.3.2/happign/tests/testthat/get_apicarto_cadastre/apicarto.ign.fr/api/cadastre/parcelle-f46f07.R |only happign-0.3.2/happign/tests/testthat/get_apicarto_rpg/apicarto.ign.fr/api/rpg/v1-2cbf34.R |only happign-0.3.2/happign/tests/testthat/get_apicarto_rpg/apicarto.ign.fr/api/rpg/v2-21bee7.R |only happign-0.3.2/happign/tests/testthat/get_apicarto_rpg/apicarto.ign.fr/api/rpg/v2-24fbfb.R |only happign-0.3.2/happign/tests/testthat/get_apicarto_rpg/apicarto.ign.fr/api/rpg/v2-8d6e67.R |only happign-0.3.2/happign/tests/testthat/get_apicarto_rpg/apicarto.ign.fr/api/rpg/v2-90cdf6.R |only happign-0.3.2/happign/tests/testthat/get_apicarto_rpg/apicarto.ign.fr/api/rpg/v2-fe16a6.R |only happign-0.3.2/happign/tests/testthat/test-get_apicarto_cadastre.R | 15 happign-0.3.2/happign/tests/testthat/test-get_iso.R | 4 happign-0.3.2/happign/tests/testthat/test-get_wms_raster.R | 75 +++ happign-0.3.2/happign/vignettes/Getting_started.Rmd | 114 ++--- happign-0.3.2/happign/vignettes/Getting_started.Rmd.orig | 2 happign-0.3.2/happign/vignettes/unnamed-chunk-5-1.png |binary happign-0.3.2/happign/vignettes/unnamed-chunk-6-1.png |binary happign-0.3.2/happign/vignettes/unnamed-chunk-7-1.png |binary happign-0.3.2/happign/vignettes/web_only/happign_for_foresters.Rmd | 219 +++++----- 49 files changed, 672 insertions(+), 382 deletions(-)
Title: Dynamic Model Averaging and Dynamic Model Selection for
Continuous Outcomes
Description: Allows to estimate dynamic model averaging, dynamic model selection and median probability model. The original methods are implemented, as well as, selected further modifications of these methods. In particular the user might choose between recursive moment estimation and exponentially moving average for variance updating. Inclusion probabilities might be modified in a way using 'Google Trends'. The code is written in a way which minimises the computational burden (which is quite an obstacle for dynamic model averaging if many variables are used). For example, this package allows for parallel computations and Occam's window approach. The package is designed in a way that is hoped to be especially useful in economics and finance. Main reference: Raftery, A.E., Karny, M., Ettler, P. (2010) <doi:10.1198/TECH.2009.08104>.
Author: Krzysztof Drachal [aut, cre]
Maintainer: Krzysztof Drachal <kdrachal@wne.uw.edu.pl>
Diff between fDMA versions 2.2.7 dated 2023-07-16 and 2.2.8 dated 2025-01-24
DESCRIPTION | 8 +- MD5 | 122 +++++++++++++++++++++---------------------- NEWS | 8 ++ R/altf.R | 4 - R/altf2.R | 4 - R/altf3.R | 4 - R/altf4.R | 4 - R/summary.altf2.R | 2 build/partial.rdb |binary build/vignette.rds |binary data/crudeoil.RData |binary data/trends.RData |binary man/altf.Rd | 5 + man/altf2.Rd | 5 + man/altf3.Rd | 5 + man/altf4.Rd | 5 + man/coef.dma.Rd | 5 + man/crudeoil.Rd | 55 ++++++++++++++----- man/dmtest.Rd | 11 ++- man/fDMA.Rd | 5 + man/fitted.dma.Rd | 5 + man/grid.DMA.Rd | 5 + man/grid.roll.reg.Rd | 5 + man/grid.tvp.Rd | 5 + man/hit.ratio.Rd | 7 +- man/hmdmtest.Rd | 11 ++- man/mdmtest.Rd | 11 ++- man/onevar.Rd | 5 + man/plot.altf.Rd | 2 man/plot.altf2.Rd | 4 - man/plot.altf3.Rd | 2 man/plot.altf4.Rd | 2 man/plot.dma.Rd | 11 ++- man/plot.grid.dma.Rd | 9 ++- man/plot.grid.roll.reg.Rd | 7 +- man/plot.grid.tvp.Rd | 7 +- man/plot.reg.Rd | 9 ++- man/plot.tvp.Rd | 7 +- man/predict.dma.Rd | 5 + man/print.altf2.Rd | 2 man/print.dma.Rd | 5 + man/print.grid.dma.Rd | 5 + man/print.grid.roll.reg.Rd | 5 + man/print.grid.tvp.Rd | 5 + man/print.reg.Rd | 5 + man/print.tvp.Rd | 5 + man/rec.reg.Rd | 5 + man/reduce.size.Rd | 5 + man/residuals.dma.Rd | 5 + man/roll.reg.Rd | 5 + man/rvi.Rd | 5 + man/stest.Rd | 5 + man/summary.altf2.Rd | 2 man/summary.dma.Rd | 5 + man/summary.grid.dma.Rd | 5 + man/summary.grid.roll.reg.Rd | 5 + man/summary.grid.tvp.Rd | 5 + man/summary.reg.Rd | 5 + man/summary.tvp.Rd | 5 + man/trends.Rd | 21 ++++--- man/tvp.Rd | 5 + src/RcppExports.cpp | 5 + 62 files changed, 330 insertions(+), 166 deletions(-)
Title: Estimation of Dynamic Finite Mixtures
Description: Allows to perform the dynamic mixture estimation with state-space components and normal regression components, and clustering with normal mixture. Quasi-Bayesian estimation, as well as, that based on the Kerridge inaccuracy approximation are implemented. Main references: Nagy and Suzdaleva (2013) <doi:10.1016/j.apm.2013.05.038>; Nagy et al. (2011) <doi:10.1002/acs.1239>.
Author: Krzysztof Drachal [aut, cre]
Maintainer: Krzysztof Drachal <kdrachal@wne.uw.edu.pl>
Diff between dynmix versions 2.0 dated 2023-06-13 and 2.1 dated 2025-01-24
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS | 8 ++++++++ data/oil.RData |binary man/cauimp.Rd | 4 ++-- man/convts.Rd | 4 ++-- man/oil.Rd | 30 +++++++++++++++++++++--------- src/RcppExports.cpp | 5 +++++ 8 files changed, 49 insertions(+), 24 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-11-21 0.3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-11-14 1.1.0
Title: Spatial Data Analysis
Description: Methods for spatial data analysis with vector (points, lines, polygons) and raster (grid) data. Methods for vector data include geometric operations such as intersect and buffer. Raster methods include local, focal, global, zonal and geometric operations. The predict and interpolate methods facilitate the use of regression type (interpolation, machine learning) models for spatial prediction, including with satellite remote sensing data. Processing of very large files is supported. See the manual and tutorials on <https://rspatial.org/> to get started. 'terra' replaces the 'raster' package ('terra' can do more, and it is faster and easier to use).
Author: Robert J. Hijmans [cre, aut] ,
Marcia Barbosa [ctb],
Roger Bivand [ctb] ,
Andrew Brown [ctb],
Michael Chirico [ctb],
Emanuele Cordano [ctb] ,
Krzysztof Dyba [ctb] ,
Edzer Pebesma [ctb] ,
Barry Rowlingson [ctb],
Michael D. Sumner [ctb]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between terra versions 1.8-10 dated 2025-01-13 and 1.8-15 dated 2025-01-24
DESCRIPTION | 14 MD5 | 60 +-- NEWS.md | 23 + R/Zdeprecated.R | 3 R/distance.R | 67 ++-- R/divide.R | 20 - R/k_means.R | 19 + R/messages.R | 19 - R/plot.R | 737 +++++++++++++++++++++++----------------------- R/relate.R | 2 R/time.R | 7 R/wrap.R | 45 ++ R/write.R | 2 inst/tinytest/test_rds.R |only inst/tinytest/test_time.R |only man/adjacent.Rd | 124 +++---- man/bestMatch.Rd | 21 - man/cellSize.Rd | 6 man/combineGeoms.Rd | 160 ++++----- man/ext.Rd | 158 ++++----- man/mem.Rd | 3 man/plot.Rd | 2 man/union.Rd | 164 +++++----- man/vect.Rd | 294 +++++++++--------- src/gdalio.cpp | 1 src/geos_methods.cpp | 3 src/ram.cpp | 36 ++ src/raster_methods.cpp | 37 +- src/read_gdal.cpp | 8 src/read_ogr.cpp | 33 ++ src/write_gdal.cpp | 11 src/write_ogr.cpp | 15 32 files changed, 1152 insertions(+), 942 deletions(-)
Title: Calculating Bilateral and Multilateral Price Indexes
Description: Preparing a scanner data set for price dynamics calculations (data selecting, data classification, data matching, data filtering). Computing bilateral and multilateral indexes. For details on these methods see: Diewert and Fox (2020)
<doi:10.1080/07350015.2020.1816176>, Białek (2019) <doi:10.2478/jos-2019-0014> or Białek (2020) <doi:10.2478/jos-2020-0037>.
Author: Jacek Bialek [aut, cre]
Maintainer: Jacek Bialek <jacek.bialek@uni.lodz.pl>
Diff between PriceIndices versions 0.2.2 dated 2024-10-09 and 0.2.3 dated 2025-01-24
PriceIndices-0.2.2/PriceIndices/man/figures/README-unnamed-chunk-62-1.png |only PriceIndices-0.2.2/PriceIndices/man/figures/README-unnamed-chunk-64-1.png |only PriceIndices-0.2.2/PriceIndices/man/figures/README-unnamed-chunk-69-1.png |only PriceIndices-0.2.3/PriceIndices/DESCRIPTION | 6 PriceIndices-0.2.3/PriceIndices/MD5 | 43 PriceIndices-0.2.3/PriceIndices/NAMESPACE | 1 PriceIndices-0.2.3/PriceIndices/NEWS.md | 9 PriceIndices-0.2.3/PriceIndices/R/PriceIndices.R | 80 + PriceIndices-0.2.3/PriceIndices/R/f_data_processing.R | 105 - PriceIndices-0.2.3/PriceIndices/R/f_full_multilateral_indices.R | 543 +++++++++- PriceIndices-0.2.3/PriceIndices/README.md | 98 + PriceIndices-0.2.3/PriceIndices/inst/doc/PriceIndices.R | 6 PriceIndices-0.2.3/PriceIndices/inst/doc/PriceIndices.Rmd | 9 PriceIndices-0.2.3/PriceIndices/inst/doc/PriceIndices.html | 5 PriceIndices-0.2.3/PriceIndices/man/PriceIndices.Rd | 84 + PriceIndices-0.2.3/PriceIndices/man/data_norm.Rd | 4 PriceIndices-0.2.3/PriceIndices/man/data_selecting.Rd | 2 PriceIndices-0.2.3/PriceIndices/man/figures/README-unnamed-chunk-19-1.png |binary PriceIndices-0.2.3/PriceIndices/man/figures/README-unnamed-chunk-20-1.png |binary PriceIndices-0.2.3/PriceIndices/man/figures/README-unnamed-chunk-63-1.png |only PriceIndices-0.2.3/PriceIndices/man/figures/README-unnamed-chunk-65-1.png |only PriceIndices-0.2.3/PriceIndices/man/figures/README-unnamed-chunk-70-1.png |binary PriceIndices-0.2.3/PriceIndices/man/figures/README-unnamed-chunk-71-1.png |only PriceIndices-0.2.3/PriceIndices/man/m_decomposition.Rd |only PriceIndices-0.2.3/PriceIndices/man/shrinkflation.Rd | 26 PriceIndices-0.2.3/PriceIndices/vignettes/PriceIndices.Rmd | 9 26 files changed, 838 insertions(+), 192 deletions(-)
Title: Simple and Configurable Tables in 'HTML', 'LaTeX', 'Markdown',
'Word', 'PNG', 'PDF', and 'Typst' Formats
Description: Create highly customized tables with this simple and dependency-free package. Data frames can be converted to 'HTML', 'LaTeX', 'Markdown', 'Word', 'PNG', 'PDF', or 'Typst' tables. The user interface is minimalist and easy to learn. The syntax is concise. 'HTML' tables can be customized using the flexible 'Bootstrap' framework, and 'LaTeX' code with the 'tabularray' package.
Author: Vincent Arel-Bundock [aut, cre]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between tinytable versions 0.6.1 dated 2024-11-18 and 0.7.0 dated 2025-01-24
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tinytable-0.7.0/tinytable/R/package.R | 2 tinytable-0.7.0/tinytable/R/plot_tt.R | 16 tinytable-0.7.0/tinytable/R/print.R | 3 tinytable-0.7.0/tinytable/R/rbind2.R | 81 - tinytable-0.7.0/tinytable/R/sanity.R | 626 ++++---- tinytable-0.7.0/tinytable/R/save_tt.R | 13 tinytable-0.7.0/tinytable/R/style_bootstrap.R | 212 +- tinytable-0.7.0/tinytable/R/style_grid.R | 38 tinytable-0.7.0/tinytable/R/style_grid_dataframe.R | 27 tinytable-0.7.0/tinytable/R/style_notes.R |only tinytable-0.7.0/tinytable/R/style_string.R |only tinytable-0.7.0/tinytable/R/style_tabularray.R | 45 tinytable-0.7.0/tinytable/R/style_tt.R | 539 +++---- tinytable-0.7.0/tinytable/R/style_typst.R | 224 +-- tinytable-0.7.0/tinytable/R/theme_bootstrap.R | 45 tinytable-0.7.0/tinytable/R/theme_default.R | 39 tinytable-0.7.0/tinytable/R/theme_grid.R | 39 tinytable-0.7.0/tinytable/R/theme_multipage.R | 72 tinytable-0.7.0/tinytable/R/theme_placement.R | 48 tinytable-0.7.0/tinytable/R/theme_resize.R | 74 - 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Title: Tools for Single Cell Genomics
Description: A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>, and Hao, Hao, et al (2020) <doi:10.1101/2020.10.12.335331> for more details.
Author: Andrew Butler [ctb] ,
Saket Choudhary [ctb] ,
David Collins [ctb] ,
Charlotte Darby [ctb] ,
Jeff Farrell [ctb],
Isabella Grabski [ctb] ,
Christoph Hafemeister [ctb] ,
Yuhan Hao [ctb] ,
Austin Hartman [ctb] ,
Paul Hoffman [ctb] ,
Jaison Jain [ctb] ,
L [...truncated...]
Maintainer: Rahul Satija <seurat@nygenome.org>
Diff between Seurat versions 5.2.0 dated 2025-01-13 and 5.2.1 dated 2025-01-24
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 6 ++++++ build/Seurat.pdf |binary build/stage23.rdb |binary tests/testthat/test_find_clusters.R | 16 ++++++++++------ 6 files changed, 24 insertions(+), 14 deletions(-)
Title: Classes and Helper Functions for Working with Epidemiological
Parameters
Description: Classes and helper functions for loading, extracting, converting,
manipulating, plotting and aggregating epidemiological parameters for infectious diseases.
Epidemiological parameters extracted from the literature are loaded from the 'epiparameterDB'
R package.
Author: Joshua W. Lambert [aut, cre, cph]
,
Adam Kucharski [aut, cph] ,
Carmen Tamayo [aut] ,
Hugo Gruson [ctb, rev] ,
Sebastian Funk [ctb] ,
Pratik Gupte [rev] ,
James M. Azam [rev] ,
Chris Hartgerink [rev] ,
Tim Taylor [rev]
Maintainer: Joshua W. Lambert <joshua.lambert@lshtm.ac.uk>
Diff between epiparameter versions 0.4.0 dated 2025-01-08 and 0.4.1 dated 2025-01-24
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