Title: Basic Functions in Knowledge Space Theory Using Matrix
Representation
Description: Knowledge space theory by Doignon and Falmagne (1999)
<doi:10.1007/978-3-642-58625-5> is a set- and order-theoretical
framework, which proposes mathematical formalisms to operationalize
knowledge structures in a particular domain. The 'kstMatrix' package
provides basic functionalities to generate, handle, and manipulate
knowledge structures and knowledge spaces. Opposed to the 'kst'
package, 'kstMatrix' uses matrix representations for knowledge
structures. Furthermore, 'kstMatrix' contains several knowledge spaces
developed by the research group around Cornelia Dowling through
querying experts.
Author: Cord Hockemeyer [aut, cre],
Wai Wong [ctb]
Maintainer: Cord Hockemeyer <cord.hockemeyer@uni-graz.at>
Diff between kstMatrix versions 1.0-1 dated 2024-10-03 and 1.1-0 dated 2025-01-26
Changelog | 5 + DESCRIPTION | 11 ++-- MD5 | 27 +++++----- NAMESPACE | 1 R/kmgenerate.R |only R/xpl.R | 8 +-- build/vignette.rds |binary data/xpl.rda |binary inst/doc/kstMatrix.R | 1 inst/doc/kstMatrix.Rmd | 1 inst/doc/kstMatrix.html | 127 +++++++++++++++++++++++++----------------------- man/kmgenerate.Rd |only man/xpl.Rd | 8 +-- src/generate.c |only src/kstMatrix_init.c | 50 +++++++++++++++++- vignettes/kstMatrix.Rmd | 1 16 files changed, 152 insertions(+), 88 deletions(-)
Title: Search and Retrieve Data from Eurostat Database
Description: Eurostat is the statistical office of the European Union and provides high quality statistics for Europe.
Large set of the data is disseminated through the Eurostat database (<https://ec.europa.eu/eurostat/web/main/data/database>).
The tools are using the REST API with the Statistical Data and Metadata eXchange (SDMX) Web Services
(<https://wikis.ec.europa.eu/pages/viewpage.action?pageId=44165555>) to search and download data from
the Eurostat database using the SDMX standard.
Author: Matyas Meszaros [aut, cre],
Sebastian Weinand [ctb]
Maintainer: Matyas Meszaros <matyas.meszaros@ec.europa.eu>
Diff between restatapi versions 0.23.2 dated 2024-09-30 and 0.24.1 dated 2025-01-26
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- NEWS.md | 12 +++++++++++- R/extract_data.R | 2 ++ R/get_eurostat_toc.R | 10 +++++----- R/load_cfg.R | 2 +- README.md | 18 +++++------------- inst/tinytest/test_restatapi.R | 2 +- man/get_eurostat_toc.Rd | 4 ++-- man/load_cfg.Rd | 2 +- 10 files changed, 42 insertions(+), 38 deletions(-)
Title: An Implementation of the PREVENT and Pooled Cohort Equations
Description: Implements the American Heart Association Predicting
Risk of cardiovascular disease EVENTs (PREVENT) equations from Khan
SS, Matsushita K, Sang Y, and colleagues (2023)
<doi:10.1161/CIRCULATIONAHA.123.067626>, with optional comparison
with their de facto predecessor, the Pooled Cohort Equations from the
American Heart Association and American College of Cardiology (2013)
<doi:10.1161/01.cir.0000437741.48606.98> and the revision to the Pooled
Cohort Equations from Yadlowsky and colleagues (2018)
<doi:10.7326/M17-3011>.
Author: Martin Mayer [aut, cre, cph]
Maintainer: Martin Mayer <mmayer@ebsco.com>
Diff between preventr versions 0.10.0 dated 2024-08-17 and 0.11.0 dated 2025-01-26
DESCRIPTION | 27 MD5 | 35 NEWS.md | 68 R/globals.R | 2 R/helpers.R | 634 R/helpers_test.R | 342 R/other_models.R |only R/prevent_equations.R | 1382 README.md | 173 build |only inst |only man/app.Rd | 4 man/estimate_risk.Rd | 747 tests/testthat/_snaps/helpers_test.md | 52 tests/testthat/_snaps/prevent_equations.md |49987 ++++++++++++++--------------- tests/testthat/test-helpers.R | 436 tests/testthat/test-helpers_test.R | 66 tests/testthat/test-other_models.R |only tests/testthat/test-prevent_equations.R | 1586 vignettes |only 20 files changed, 29711 insertions(+), 25830 deletions(-)
Title: Hierarchical Bayesian Aldrich-McKelvey Scaling via 'Stan'
Description: Perform hierarchical Bayesian Aldrich-McKelvey scaling using Hamiltonian Monte
Carlo via 'Stan'. Aldrich-McKelvey ('AM') scaling is a method for estimating the ideological
positions of survey respondents and political actors on a common scale using positional survey
data. The hierarchical versions of the Bayesian 'AM' model included in this package outperform
other versions both in terms of yielding meaningful posterior distributions for respondent
positions and in terms of recovering true respondent positions in simulations. The package
contains functions for preparing data, fitting models, extracting estimates, plotting key
results, and comparing models using cross-validation. The original version of the default
model is described in Bølstad (2024) <doi:10.1017/pan.2023.18>.
Author: Joergen Boelstad [aut, cre]
Maintainer: Joergen Boelstad <jorgen.bolstad@stv.uio.no>
Diff between hbamr versions 2.3.2 dated 2024-09-23 and 2.4.0 dated 2025-01-26
hbamr-2.3.2/hbamr/R/show_code.R |only hbamr-2.3.2/hbamr/inst/stan/BAM.stan |only hbamr-2.3.2/hbamr/inst/stan/FBAM.stan |only hbamr-2.3.2/hbamr/inst/stan/FBAM_MULTI.stan |only hbamr-2.3.2/hbamr/inst/stan/FBAM_MULTI_NF.stan |only hbamr-2.3.2/hbamr/inst/stan/HBAM.stan |only hbamr-2.3.2/hbamr/inst/stan/HBAM_MINI.stan |only hbamr-2.3.2/hbamr/inst/stan/HBAM_MULTI.stan |only hbamr-2.3.2/hbamr/inst/stan/HBAM_MULTI_NF.stan |only hbamr-2.3.2/hbamr/inst/stan/HBAM_NF.stan |only hbamr-2.3.2/hbamr/inst/stan/HBAM_R_MINI.stan |only hbamr-2.3.2/hbamr/man/show_code.Rd |only hbamr-2.3.2/hbamr/src/Makevars.win |only hbamr-2.3.2/hbamr/src/stanExports_BAM.cc |only hbamr-2.3.2/hbamr/src/stanExports_BAM.h |only hbamr-2.3.2/hbamr/src/stanExports_FBAM.cc |only hbamr-2.3.2/hbamr/src/stanExports_FBAM.h |only hbamr-2.3.2/hbamr/src/stanExports_FBAM_MULTI.cc |only hbamr-2.3.2/hbamr/src/stanExports_FBAM_MULTI.h |only hbamr-2.3.2/hbamr/src/stanExports_FBAM_MULTI_NF.cc |only hbamr-2.3.2/hbamr/src/stanExports_FBAM_MULTI_NF.h |only hbamr-2.3.2/hbamr/src/stanExports_HBAM.cc |only hbamr-2.3.2/hbamr/src/stanExports_HBAM.h |only hbamr-2.3.2/hbamr/src/stanExports_HBAM_MINI.cc |only hbamr-2.3.2/hbamr/src/stanExports_HBAM_MINI.h |only hbamr-2.3.2/hbamr/src/stanExports_HBAM_MULTI.cc |only hbamr-2.3.2/hbamr/src/stanExports_HBAM_MULTI.h |only hbamr-2.3.2/hbamr/src/stanExports_HBAM_MULTI_NF.cc |only hbamr-2.3.2/hbamr/src/stanExports_HBAM_MULTI_NF.h |only hbamr-2.3.2/hbamr/src/stanExports_HBAM_NF.cc |only hbamr-2.3.2/hbamr/src/stanExports_HBAM_NF.h |only hbamr-2.3.2/hbamr/src/stanExports_HBAM_R_MINI.cc |only hbamr-2.3.2/hbamr/src/stanExports_HBAM_R_MINI.h |only hbamr-2.4.0/hbamr/DESCRIPTION | 8 - hbamr-2.4.0/hbamr/MD5 | 68 ++------ hbamr-2.4.0/hbamr/NAMESPACE | 1 hbamr-2.4.0/hbamr/NEWS.md | 10 + hbamr-2.4.0/hbamr/R/fbam.R | 17 +- hbamr-2.4.0/hbamr/R/hbam.R | 59 ++++++- hbamr-2.4.0/hbamr/R/hbam_cv.R | 19 +- hbamr-2.4.0/hbamr/R/inits.R | 161 ++++++++++++--------- hbamr-2.4.0/hbamr/R/prep_data.R | 9 - hbamr-2.4.0/hbamr/R/stanmodels.R | 13 - hbamr-2.4.0/hbamr/build/partial.rdb |binary hbamr-2.4.0/hbamr/build/vignette.rds |binary hbamr-2.4.0/hbamr/inst/doc/hbamr.R | 88 +++++------ hbamr-2.4.0/hbamr/inst/doc/hbamr.html | 158 ++++++++++---------- hbamr-2.4.0/hbamr/inst/stan/omni.stan |only hbamr-2.4.0/hbamr/man/fbam.Rd | 5 hbamr-2.4.0/hbamr/man/hbam_cv.Rd | 10 - hbamr-2.4.0/hbamr/src/RcppExports.cpp | 22 -- hbamr-2.4.0/hbamr/src/stanExports_omni.cc |only hbamr-2.4.0/hbamr/src/stanExports_omni.h |only 53 files changed, 337 insertions(+), 311 deletions(-)
Title: Download Air Quality and Meteorological Information of Chile
Description: Download air quality and meteorological information of Chile from the National Air Quality System (S.I.N.C.A.)<https://sinca.mma.gob.cl/> dependent on the Ministry of the Environment and the Meteorological Directorate of Chile (D.M.C.)<https://www.meteochile.gob.cl/> dependent on the Directorate General of Civil Aeronautics.
Author: Francisco Catalan Meyer [aut, cre]
,
Manuel Leiva [aut] ,
Richard Toro [aut]
Maintainer: Francisco Catalan Meyer <francisco.catalan@ug.uchile.cl>
Diff between AtmChile versions 1.0.3 dated 2025-01-25 and 1.0.4 dated 2025-01-26
DESCRIPTION | 6 - MD5 | 4 - R/ChileAirQuality.R | 176 +++++++++++++++++++++++++++++----------------------- 3 files changed, 106 insertions(+), 80 deletions(-)
Title: Automated Reporting of Results and Statistical Models
Description: The aim of the 'report' package is to bridge the gap between
R’s output and the formatted results contained in your manuscript.
This package converts statistical models and data frames into textual
reports suited for publication, ensuring standardization and quality
in results reporting.
Author: Dominique Makowski [aut] ,
Daniel Luedecke [aut] ,
Indrajeet Patil [aut] ,
Remi Theriault [aut, cre] ,
Mattan S. Ben-Shachar [aut] ,
Brenton M. Wiernik [aut] ,
Rudolf Siegel [ctb] ,
Camden Bock [ctb]
Maintainer: Remi Theriault <remi.theriault@mail.mcgill.ca>
Diff between report versions 0.5.9 dated 2024-07-10 and 0.6.0 dated 2025-01-26
report-0.5.9/report/tests/testthat/helper-state.R |only report-0.6.0/report/DESCRIPTION | 50 +-- report-0.6.0/report/MD5 | 103 +++---- report-0.6.0/report/NEWS.md | 7 report-0.6.0/report/R/cite_easystats.R | 8 report-0.6.0/report/R/format_formula.R | 4 report-0.6.0/report/R/report.BFBayesFactor.R | 1 report-0.6.0/report/R/report.R | 1 report-0.6.0/report/R/report.aov.R | 5 report-0.6.0/report/R/report.bayesfactor_models.R | 6 report-0.6.0/report/R/report.brmsfit.R | 1 report-0.6.0/report/R/report.character.R | 11 report-0.6.0/report/R/report.compare.loo.R | 8 report-0.6.0/report/R/report.data.frame.R | 15 - report-0.6.0/report/R/report.estimate_contrasts.R | 2 report-0.6.0/report/R/report.factor.R | 5 report-0.6.0/report/R/report.htest.R | 10 report-0.6.0/report/R/report.lavaan.R | 2 report-0.6.0/report/R/report.lm.R | 5 report-0.6.0/report/R/report.numeric.R | 4 report-0.6.0/report/R/report.sessionInfo.R | 5 report-0.6.0/report/R/report.stanreg.R | 2 report-0.6.0/report/R/report_effectsize.R | 4 report-0.6.0/report/R/report_htest_chi2.R | 16 - report-0.6.0/report/R/report_htest_cor.R | 1 report-0.6.0/report/R/report_htest_fisher.R | 4 report-0.6.0/report/R/report_htest_ttest.R | 6 report-0.6.0/report/R/report_info.R | 4 report-0.6.0/report/R/report_intercept.R | 3 report-0.6.0/report/R/report_misc.R | 1 report-0.6.0/report/R/report_model.R | 3 report-0.6.0/report/R/report_parameters.R | 6 report-0.6.0/report/R/report_performance.R | 2 report-0.6.0/report/R/report_priors.R | 3 report-0.6.0/report/R/report_random.R | 3 report-0.6.0/report/R/report_sample.R | 12 report-0.6.0/report/R/report_statistics.R | 2 report-0.6.0/report/R/report_table.R | 4 report-0.6.0/report/R/utils_combine_tables.R | 2 report-0.6.0/report/README.md | 38 +- report-0.6.0/report/inst/WORDLIST | 8 report-0.6.0/report/inst/doc/cite_packages.html | 4 report-0.6.0/report/inst/doc/report.html | 45 ++- report-0.6.0/report/inst/doc/report_table.html | 80 ++++- report-0.6.0/report/man/report-package.Rd | 12 report-0.6.0/report/man/report.compare.loo.Rd | 6 report-0.6.0/report/tests/testthat/_snaps/windows/report.htest-chi2.md | 16 - report-0.6.0/report/tests/testthat/_snaps/windows/report_performance.md | 2 report-0.6.0/report/tests/testthat/_snaps/windows/report_sample.md | 146 +++++++--- report-0.6.0/report/tests/testthat/test-format_model.R | 2 report-0.6.0/report/tests/testthat/test-report.aov.R | 4 report-0.6.0/report/tests/testthat/test-report.htest-chi2.R | 5 report-0.6.0/report/tests/testthat/test-report.lmer.R | 4 53 files changed, 372 insertions(+), 331 deletions(-)
Title: Mediation Analysis Using Joint Significance
Description: A set of helper functions to conduct joint-significance tests
for mediation analysis, as recommended by Yzerbyt, Muller, Batailler,
& Judd. (2018) <doi:10.1037/pspa0000132>.
Author: Cedric Batailler [aut, cre] ,
Dominique Muller [aut] ,
Vincent Yzerbyt [aut] ,
Charles Judd [aut],
Yoann Julliard [ctb] ,
Arnold Ho [dtc],
Nour Kteily [dtc],
Jacqueline Chen [dtc],
Simone Dohle [dtc],
Michael Siegrist [dtc]
Maintainer: Cedric Batailler <cedric.batailler@gmail.com>
Diff between JSmediation versions 0.2.2 dated 2024-02-28 and 0.2.3 dated 2025-01-26
JSmediation-0.2.2/JSmediation/tests/testthat/_snaps |only JSmediation-0.2.3/JSmediation/DESCRIPTION | 11 +++--- JSmediation-0.2.3/JSmediation/MD5 | 17 ++++------ JSmediation-0.2.3/JSmediation/NEWS.md | 7 +++- JSmediation-0.2.3/JSmediation/R/standarize_variable.R | 2 - JSmediation-0.2.3/JSmediation/inst/doc/jsmediation.R | 12 +++---- JSmediation-0.2.3/JSmediation/inst/doc/jsmediation.html | 14 +++++--- JSmediation-0.2.3/JSmediation/inst/doc/moderated-mediation.html | 11 +++--- JSmediation-0.2.3/JSmediation/man/JSmediation-package.Rd | 2 - JSmediation-0.2.3/JSmediation/man/standardize_variable.Rd | 2 - 10 files changed, 44 insertions(+), 34 deletions(-)
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2017-04-21 1.0.0
Title: Visualizations of High-Dimensional Data
Description: Gives access to data visualisation methods that are relevant from the data scientist's point of view. The flagship idea of 'DataVisualizations' is the mirrored density plot (MD-plot) for either classified or non-classified multivariate data published in Thrun, M.C. et al.: "Analyzing the Fine Structure of Distributions" (2020), PLoS ONE, <DOI:10.1371/journal.pone.0238835>. The MD-plot outperforms the box-and-whisker diagram (box plot), violin plot and bean plot and geom_violin plot of ggplot2. Furthermore, a collection of various visualization methods for univariate data is provided. In the case of exploratory data analysis, 'DataVisualizations' makes it possible to inspect the distribution of each feature of a dataset visually through a combination of four methods. One of these methods is the Pareto density estimation (PDE) of the probability density function (pdf). Additionally, visualizations of the distribution of distances using PDE, the scatter-density plot using PDE for tw [...truncated...]
Author: Michael Thrun [aut, cre, cph] ,
Felix Pape [aut, rev],
Onno Hansen-Goos [ctr, ctb],
Quirin Stier [ctb, rev] ,
Hamza Tayyab [ctr, ctb],
Luca Brinkmann [ctr, ctb],
Dirk Eddelbuettel [ctr],
Craig Varrichio [ctr],
Alfred Ultsch [dtc, ctb, ctr]
Maintainer: Michael Thrun <m.thrun@gmx.net>
Diff between DataVisualizations versions 1.3.2 dated 2023-10-10 and 1.3.3 dated 2025-01-26
DataVisualizations-1.3.2/DataVisualizations/README.md |only DataVisualizations-1.3.3/DataVisualizations/DESCRIPTION | 16 DataVisualizations-1.3.3/DataVisualizations/MD5 | 66 +- DataVisualizations-1.3.3/DataVisualizations/NAMESPACE | 17 DataVisualizations-1.3.3/DataVisualizations/R/ABCbarplot.R | 82 +-- DataVisualizations-1.3.3/DataVisualizations/R/ClassBarPlot.R |only DataVisualizations-1.3.3/DataVisualizations/R/ClassErrorbar.R | 226 +++----- DataVisualizations-1.3.3/DataVisualizations/R/ClassPDEplotMaxLikeli.R | 52 -- DataVisualizations-1.3.3/DataVisualizations/R/Classplot.R | 50 + DataVisualizations-1.3.3/DataVisualizations/R/CombineCols.R | 9 DataVisualizations-1.3.3/DataVisualizations/R/CombineRows.R |only DataVisualizations-1.3.3/DataVisualizations/R/InspectBoxplots.R | 4 DataVisualizations-1.3.3/DataVisualizations/R/MDplot.R | 19 DataVisualizations-1.3.3/DataVisualizations/R/Meanrobust.R |only DataVisualizations-1.3.3/DataVisualizations/R/Multiplot.R | 38 + DataVisualizations-1.3.3/DataVisualizations/R/PDEnormrobust.R |only DataVisualizations-1.3.3/DataVisualizations/R/PDEplot.R | 206 ++++---- DataVisualizations-1.3.3/DataVisualizations/R/ParetoDensityEstimation.R | 6 DataVisualizations-1.3.3/DataVisualizations/R/Pixelmatrix.R | 250 ++++----- DataVisualizations-1.3.3/DataVisualizations/R/PlotMissingvalues.R | 2 DataVisualizations-1.3.3/DataVisualizations/R/ROC.R | 4 DataVisualizations-1.3.3/DataVisualizations/R/Sheparddiagram.R | 102 ++-- DataVisualizations-1.3.3/DataVisualizations/R/Stdrobust.R |only DataVisualizations-1.3.3/DataVisualizations/R/stat_pde_density.R | 2 DataVisualizations-1.3.3/DataVisualizations/build/partial.rdb |binary DataVisualizations-1.3.3/DataVisualizations/build/vignette.rds |binary DataVisualizations-1.3.3/DataVisualizations/inst/NEWS | 22 DataVisualizations-1.3.3/DataVisualizations/inst/doc/DataVisualizations.html | 252 ++++------ DataVisualizations-1.3.3/DataVisualizations/man/ClassBarPlot.Rd |only DataVisualizations-1.3.3/DataVisualizations/man/Classplot.Rd | 9 DataVisualizations-1.3.3/DataVisualizations/man/CombineCols.Rd | 12 DataVisualizations-1.3.3/DataVisualizations/man/CombineRows.Rd |only DataVisualizations-1.3.3/DataVisualizations/man/DrawWorldWithCls.Rd |only DataVisualizations-1.3.3/DataVisualizations/man/Meanrobust.Rd |only DataVisualizations-1.3.3/DataVisualizations/man/Multiplot.Rd | 6 DataVisualizations-1.3.3/DataVisualizations/man/PDEnormrobust.Rd |only DataVisualizations-1.3.3/DataVisualizations/man/ROC.Rd | 6 DataVisualizations-1.3.3/DataVisualizations/man/Stdrobust.Rd |only DataVisualizations-1.3.3/DataVisualizations/man/stat_pde_density.Rd | 200 +++---- DataVisualizations-1.3.3/DataVisualizations/man/zplot.Rd | 5 40 files changed, 843 insertions(+), 820 deletions(-)
More information about DataVisualizations at CRAN
Permanent link
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Title: Defining 'Moodle' Elements from R
Description: The main objective of this package is to support the
definition of 'Moodle' elements taking advantage of the power that R
offers. In this first version, it allows the definition of quizzes
to be included in the question bank.
Author: Jose Samos [aut, cre] ,
Universidad de Granada [cph]
Maintainer: Jose Samos <jsamos@ugr.es>
Diff between moodef versions 1.1.0 dated 2024-03-09 and 1.2.0 dated 2025-01-26
moodef-1.1.0/moodef/R/define_questions_from.R |only moodef-1.1.0/moodef/man/format_questions.Rd |only moodef-1.1.0/moodef/man/generate_name.Rd |only moodef-1.1.0/moodef/man/generate_question.Rd |only moodef-1.1.0/moodef/man/generate_questiontext.Rd |only moodef-1.1.0/moodef/tests/testthat/test-define_questions_from.R |only moodef-1.2.0/moodef/DESCRIPTION | 14 moodef-1.2.0/moodef/MD5 | 154 + moodef-1.2.0/moodef/NAMESPACE | 2 moodef-1.2.0/moodef/NEWS.md | 7 moodef-1.2.0/moodef/R/common.R | 71 moodef-1.2.0/moodef/R/data.R |only moodef-1.2.0/moodef/R/determine_question_type.R |only moodef-1.2.0/moodef/R/format_questions.R |only moodef-1.2.0/moodef/R/format_questions_extended.R |only moodef-1.2.0/moodef/R/generate_ddmarker.R |only moodef-1.2.0/moodef/R/generate_ddwtos.R | 30 moodef-1.2.0/moodef/R/generate_essay.R | 4 moodef-1.2.0/moodef/R/generate_gapselect.R | 18 moodef-1.2.0/moodef/R/generate_matching.R | 18 moodef-1.2.0/moodef/R/generate_multichoice.R | 54 moodef-1.2.0/moodef/R/generate_numerical.R | 29 moodef-1.2.0/moodef/R/generate_ordering.R | 16 moodef-1.2.0/moodef/R/generate_shortanswer.R | 9 moodef-1.2.0/moodef/R/generate_truefalse.R | 29 moodef-1.2.0/moodef/R/generate_xml.R | 489 +---- moodef-1.2.0/moodef/R/question_category.R | 290 ++- moodef-1.2.0/moodef/R/question_category_definition.R |only moodef-1.2.0/moodef/R/question_category_generation.R |only moodef-1.2.0/moodef/R/support.R | 173 + moodef-1.2.0/moodef/README.md | 160 + moodef-1.2.0/moodef/build/vignette.rds |binary moodef-1.2.0/moodef/data |only moodef-1.2.0/moodef/inst/doc/moodef.R | 81 moodef-1.2.0/moodef/inst/doc/moodef.Rmd | 377 ++-- moodef-1.2.0/moodef/inst/doc/moodef.html | 896 ++++++---- moodef-1.2.0/moodef/inst/extdata/questions.csv | 2 moodef-1.2.0/moodef/inst/extdata/questions.xlsx |binary moodef-1.2.0/moodef/man/adapt_image.Rd | 47 moodef-1.2.0/moodef/man/allowed_types.Rd |only moodef-1.2.0/moodef/man/create_common_question_df.Rd |only moodef-1.2.0/moodef/man/create_default_value_question_df.Rd |only moodef-1.2.0/moodef/man/create_question_csv.Rd | 4 moodef-1.2.0/moodef/man/create_question_data_frame.Rd | 5 moodef-1.2.0/moodef/man/create_question_excel.Rd | 4 moodef-1.2.0/moodef/man/define_extended_question.Rd |only moodef-1.2.0/moodef/man/define_question.Rd | 7 moodef-1.2.0/moodef/man/define_questions_from_csv.Rd | 7 moodef-1.2.0/moodef/man/define_questions_from_data_frame.Rd | 7 moodef-1.2.0/moodef/man/define_questions_from_df.Rd |only moodef-1.2.0/moodef/man/define_questions_from_excel.Rd | 7 moodef-1.2.0/moodef/man/determine_question_type.Rd |only moodef-1.2.0/moodef/man/extract_type_orientation.Rd |only moodef-1.2.0/moodef/man/filter_non_empty_answers.Rd |only moodef-1.2.0/moodef/man/generate_ddmarker.Rd |only moodef-1.2.0/moodef/man/generate_ddwtos.Rd | 67 moodef-1.2.0/moodef/man/generate_gapselect.Rd | 67 moodef-1.2.0/moodef/man/generate_matching.Rd | 67 moodef-1.2.0/moodef/man/generate_multichoice.Rd | 67 moodef-1.2.0/moodef/man/generate_numerical.Rd | 46 moodef-1.2.0/moodef/man/generate_ordering.Rd | 73 moodef-1.2.0/moodef/man/generate_question_body.Rd |only moodef-1.2.0/moodef/man/generate_question_name.Rd |only moodef-1.2.0/moodef/man/generate_shortanswer.Rd | 38 moodef-1.2.0/moodef/man/generate_truefalse.Rd | 42 moodef-1.2.0/moodef/man/generate_xml.Rd | 7 moodef-1.2.0/moodef/man/generate_xml_file.Rd | 7 moodef-1.2.0/moodef/man/get_detailed_type_names.Rd |only moodef-1.2.0/moodef/man/get_non_empty_fields_by_prefix.Rd |only moodef-1.2.0/moodef/man/get_vector_answer.Rd |only moodef-1.2.0/moodef/man/has_gaps.Rd | 38 moodef-1.2.0/moodef/man/is_numeric.Rd | 38 moodef-1.2.0/moodef/man/process_question_dataframe.Rd |only moodef-1.2.0/moodef/man/question_category.Rd | 20 moodef-1.2.0/moodef/man/simplified_types.Rd |only moodef-1.2.0/moodef/man/string_to_string_vector.Rd | 37 moodef-1.2.0/moodef/man/string_to_vector.Rd | 37 moodef-1.2.0/moodef/man/xml_image.Rd |only moodef-1.2.0/moodef/man/xml_question.Rd |only moodef-1.2.0/moodef/man/xml_question_category.Rd |only moodef-1.2.0/moodef/man/xml_question_idnumber.Rd |only moodef-1.2.0/moodef/man/xml_question_name.Rd |only moodef-1.2.0/moodef/man/xml_question_tags.Rd |only moodef-1.2.0/moodef/man/xml_questiontext.Rd |only moodef-1.2.0/moodef/tests/testthat/test-common.R |only moodef-1.2.0/moodef/tests/testthat/test-determine_question_type.R |only moodef-1.2.0/moodef/tests/testthat/test-format_questions.R |only moodef-1.2.0/moodef/tests/testthat/test-format_questions_extended.R |only moodef-1.2.0/moodef/tests/testthat/test-generate_ddmarker.R |only moodef-1.2.0/moodef/tests/testthat/test-generate_ddwtos.R |only moodef-1.2.0/moodef/tests/testthat/test-generate_essay.R |only moodef-1.2.0/moodef/tests/testthat/test-generate_gapselect.R |only moodef-1.2.0/moodef/tests/testthat/test-generate_matching.R |only moodef-1.2.0/moodef/tests/testthat/test-generate_multichoice.R |only moodef-1.2.0/moodef/tests/testthat/test-generate_numerical.R |only moodef-1.2.0/moodef/tests/testthat/test-generate_ordering.R |only moodef-1.2.0/moodef/tests/testthat/test-generate_shortanswer.R |only moodef-1.2.0/moodef/tests/testthat/test-generate_truefalse.R |only moodef-1.2.0/moodef/tests/testthat/test-generate_xml.R | 74 moodef-1.2.0/moodef/tests/testthat/test-question_category.R | 354 +++ moodef-1.2.0/moodef/tests/testthat/test-question_category_definition.R |only moodef-1.2.0/moodef/tests/testthat/test-question_category_generation.R |only moodef-1.2.0/moodef/tests/testthat/test-support.R | 86 moodef-1.2.0/moodef/vignettes/moodef.Rmd | 377 ++-- 104 files changed, 2873 insertions(+), 1680 deletions(-)
Title: A Tidy Implementation of Heatmap
Description: This is a tidy implementation for heatmap. At the
moment it is based on the (great) package 'ComplexHeatmap'. The goal
of this package is to interface a tidy data frame with this powerful
tool. Some of the advantages are: Row and/or columns colour
annotations are easy to integrate just specifying one parameter
(column names). Custom grouping of rows is easy to specify providing
a grouped tbl. For example: df %>% group_by(...). Labels size
adjusted by row and column total number. Default use of Brewer and
Viridis palettes.
Author: Stefano Mangiola [aut, cre],
Anthony Papenfuss [ctb]
Maintainer: Stefano Mangiola <mangiolastefano@gmail.com>
Diff between tidyHeatmap versions 1.8.1 dated 2022-05-20 and 1.11.4 dated 2025-01-26
tidyHeatmap-1.11.4/tidyHeatmap/DESCRIPTION | 12 tidyHeatmap-1.11.4/tidyHeatmap/MD5 | 189 tidyHeatmap-1.11.4/tidyHeatmap/NAMESPACE | 16 tidyHeatmap-1.11.4/tidyHeatmap/R/data.R | 28 tidyHeatmap-1.11.4/tidyHeatmap/R/deprecated_framework.R | 1206 +-- tidyHeatmap-1.11.4/tidyHeatmap/R/functions.R | 936 +- tidyHeatmap-1.11.4/tidyHeatmap/R/ggsave.R | 120 tidyHeatmap-1.11.4/tidyHeatmap/R/methods.R | 867 +- tidyHeatmap-1.11.4/tidyHeatmap/R/patchwork.R | 151 tidyHeatmap-1.11.4/tidyHeatmap/R/subset.R | 111 tidyHeatmap-1.11.4/tidyHeatmap/R/utilities.R | 2520 +++--- tidyHeatmap-1.11.4/tidyHeatmap/R/validation.R | 524 - tidyHeatmap-1.11.4/tidyHeatmap/R/zzz.R | 50 tidyHeatmap-1.11.4/tidyHeatmap/README.md | 556 - tidyHeatmap-1.11.4/tidyHeatmap/build/stage23.rdb |only tidyHeatmap-1.11.4/tidyHeatmap/build/vignette.rds |binary tidyHeatmap-1.11.4/tidyHeatmap/inst/CITATION | 30 tidyHeatmap-1.11.4/tidyHeatmap/inst/WORDLIST | 82 tidyHeatmap-1.11.4/tidyHeatmap/inst/doc/introduction.R | 234 tidyHeatmap-1.11.4/tidyHeatmap/inst/doc/introduction.Rmd | 667 + tidyHeatmap-1.11.4/tidyHeatmap/inst/doc/introduction.html | 944 +- tidyHeatmap-1.11.4/tidyHeatmap/man/N52.Rd | 40 tidyHeatmap-1.11.4/tidyHeatmap/man/add_annotation.Rd | 88 tidyHeatmap-1.11.4/tidyHeatmap/man/add_bar-method.Rd | 116 tidyHeatmap-1.11.4/tidyHeatmap/man/add_line-method.Rd | 102 tidyHeatmap-1.11.4/tidyHeatmap/man/add_point-method.Rd | 102 tidyHeatmap-1.11.4/tidyHeatmap/man/add_tile-method.Rd | 103 tidyHeatmap-1.11.4/tidyHeatmap/man/annot_to_list.Rd | 34 tidyHeatmap-1.11.4/tidyHeatmap/man/annotation_bar-method.Rd |only tidyHeatmap-1.11.4/tidyHeatmap/man/annotation_line-method.Rd |only tidyHeatmap-1.11.4/tidyHeatmap/man/annotation_numeric-method.Rd |only tidyHeatmap-1.11.4/tidyHeatmap/man/annotation_point-method.Rd |only tidyHeatmap-1.11.4/tidyHeatmap/man/annotation_tile-method.Rd |only tidyHeatmap-1.11.4/tidyHeatmap/man/as_ComplexHeatmap-method.Rd | 86 tidyHeatmap-1.11.4/tidyHeatmap/man/check_if_counts_is_na.Rd | 38 tidyHeatmap-1.11.4/tidyHeatmap/man/check_if_wrong_input.Rd | 42 tidyHeatmap-1.11.4/tidyHeatmap/man/figures/example_plot.png |only tidyHeatmap-1.11.4/tidyHeatmap/man/get_x_y_annotation_columns.Rd | 46 tidyHeatmap-1.11.4/tidyHeatmap/man/heatmap-method.Rd | 233 tidyHeatmap-1.11.4/tidyHeatmap/man/ifelse2_pipe.Rd | 54 tidyHeatmap-1.11.4/tidyHeatmap/man/ifelse_pipe.Rd | 46 tidyHeatmap-1.11.4/tidyHeatmap/man/input_heatmap.Rd | 100 tidyHeatmap-1.11.4/tidyHeatmap/man/layer_arrow_down-method.Rd | 101 tidyHeatmap-1.11.4/tidyHeatmap/man/layer_arrow_up-method.Rd | 101 tidyHeatmap-1.11.4/tidyHeatmap/man/layer_asterisk-method.Rd |only tidyHeatmap-1.11.4/tidyHeatmap/man/layer_diamond-method.Rd | 101 tidyHeatmap-1.11.4/tidyHeatmap/man/layer_point-method.Rd | 101 tidyHeatmap-1.11.4/tidyHeatmap/man/layer_square-method.Rd | 101 tidyHeatmap-1.11.4/tidyHeatmap/man/layer_star-method.Rd |only tidyHeatmap-1.11.4/tidyHeatmap/man/layer_text-method.Rd |only tidyHeatmap-1.11.4/tidyHeatmap/man/pasilla.Rd | 40 tidyHeatmap-1.11.4/tidyHeatmap/man/quo_names.Rd | 34 tidyHeatmap-1.11.4/tidyHeatmap/man/save_pdf-Heatmap-method.Rd | 56 tidyHeatmap-1.11.4/tidyHeatmap/man/save_pdf-InputHeatmap-method.Rd | 56 tidyHeatmap-1.11.4/tidyHeatmap/man/save_pdf-methods.Rd | 109 tidyHeatmap-1.11.4/tidyHeatmap/man/scale_robust.Rd | 42 tidyHeatmap-1.11.4/tidyHeatmap/man/split-methods.Rd | 160 tidyHeatmap-1.11.4/tidyHeatmap/man/wrap_heatmap-method.Rd | 131 tidyHeatmap-1.11.4/tidyHeatmap/tests/testthat/Rplots.pdf |binary tidyHeatmap-1.11.4/tidyHeatmap/tests/testthat/_snaps/tests/annotated-heatmap-1.svg | 2086 ++--- tidyHeatmap-1.11.4/tidyHeatmap/tests/testthat/_snaps/tests/annotated-heatmap-2.svg | 2338 +++--- tidyHeatmap-1.11.4/tidyHeatmap/tests/testthat/_snaps/tests/base.svg | 1828 ++-- tidyHeatmap-1.11.4/tidyHeatmap/tests/testthat/_snaps/tests/colorramp2.svg | 1834 ++-- tidyHeatmap-1.11.4/tidyHeatmap/tests/testthat/_snaps/tests/group-ordering-2.svg |only tidyHeatmap-1.11.4/tidyHeatmap/tests/testthat/_snaps/tests/group-ordering.svg |only tidyHeatmap-1.11.4/tidyHeatmap/tests/testthat/_snaps/tests/grouped-annotated-heatmap-1.svg | 2078 ++--- tidyHeatmap-1.11.4/tidyHeatmap/tests/testthat/_snaps/tests/grouped-annotated-heatmap-2.svg | 2461 +++--- tidyHeatmap-1.11.4/tidyHeatmap/tests/testthat/_snaps/tests/grouped-custom-color-both.svg | 2481 +++--- tidyHeatmap-1.11.4/tidyHeatmap/tests/testthat/_snaps/tests/grouped.svg | 1820 ++-- tidyHeatmap-1.11.4/tidyHeatmap/tests/testthat/_snaps/tests/layer-symbol.svg | 1888 ++-- tidyHeatmap-1.11.4/tidyHeatmap/tests/testthat/_snaps/tests/legend.svg | 1701 ++-- tidyHeatmap-1.11.4/tidyHeatmap/tests/testthat/_snaps/tests/multi-type.svg | 2446 +++--- tidyHeatmap-1.11.4/tidyHeatmap/tests/testthat/_snaps/tests/numeric-right.svg |only tidyHeatmap-1.11.4/tidyHeatmap/tests/testthat/_snaps/tests/patchwork-padding.svg |only tidyHeatmap-1.11.4/tidyHeatmap/tests/testthat/_snaps/tests/plus-operator.svg | 2992 +++---- tidyHeatmap-1.11.4/tidyHeatmap/tests/testthat/_snaps/tests/show-heatmap-legend.svg | 2251 ++--- tidyHeatmap-1.11.4/tidyHeatmap/tests/testthat/_snaps/tests/size-annotation.svg | 1949 ++--- tidyHeatmap-1.11.4/tidyHeatmap/tests/testthat/_snaps/tests/sparse-matrix.svg | 302 tidyHeatmap-1.11.4/tidyHeatmap/tests/testthat/_snaps/tests/sparse.svg | 1834 ++-- tidyHeatmap-1.11.4/tidyHeatmap/tests/testthat/_snaps/tests/split.svg | 1832 ++-- tidyHeatmap-1.11.4/tidyHeatmap/tests/testthat/_snaps/tests/text-base.svg |only tidyHeatmap-1.11.4/tidyHeatmap/tests/testthat/_snaps/tests/text-complex.svg |only tidyHeatmap-1.11.4/tidyHeatmap/tests/testthat/_snaps/tests/text-multiple.svg |only tidyHeatmap-1.11.4/tidyHeatmap/tests/testthat/_snaps/tests/text-with-size-column.svg |only tidyHeatmap-1.11.4/tidyHeatmap/tests/testthat/_snaps/tests/text-with-size.svg |only tidyHeatmap-1.11.4/tidyHeatmap/tests/testthat/_snaps/tests/text-with-text-column.svg |only tidyHeatmap-1.11.4/tidyHeatmap/tests/testthat/_snaps/tests/tile-colorramp2-palette.svg | 2132 ++--- tidyHeatmap-1.11.4/tidyHeatmap/tests/testthat/_snaps/tests/tile-factor-custom-palette.svg |only tidyHeatmap-1.11.4/tidyHeatmap/tests/testthat/_snaps/tests/wrap-heatmap.svg | 3805 +++++----- tidyHeatmap-1.11.4/tidyHeatmap/tests/testthat/spelling.R | 8 tidyHeatmap-1.11.4/tidyHeatmap/tests/testthat/tests.R | 1497 ++- tidyHeatmap-1.11.4/tidyHeatmap/vignettes/introduction.Rmd | 667 + tidyHeatmap-1.8.1/tidyHeatmap/build/tidyHeatmap.pdf |only tidyHeatmap-1.8.1/tidyHeatmap/inst/logo.png |only tidyHeatmap-1.8.1/tidyHeatmap/inst/logo.svg |only tidyHeatmap-1.8.1/tidyHeatmap/man/fragments |only tidyHeatmap-1.8.1/tidyHeatmap/man/scale_design.Rd |only 97 files changed, 28162 insertions(+), 25674 deletions(-)
Title: Create Standalone and Composite Plots in 'ggplot2' for
Publications
Description: Provides functions for creating and annotating a composite plot in 'ggplot2'. Offers background themes and shortcut plotting functions that produce figures that are appropriate for the format of scientific journals. Some methods are described in Min and Zhou (2021) <doi:10.3389/fgene.2021.802894>.
Author: Seung Hyun Min [aut, cre]
Maintainer: Seung Hyun Min <seung.min@mail.mcgill.ca>
Diff between smplot2 versions 0.2.4 dated 2024-06-23 and 0.2.5 dated 2025-01-26
DESCRIPTION | 16 - MD5 | 112 ++++++------- R/sm_add_legend.R | 58 +++--- R/sm_add_point.R | 27 +-- R/sm_add_text.R | 44 ++--- R/sm_auc.R | 18 -- R/sm_auc_all.R | 72 +++----- R/sm_bar2.R | 207 +++++++++++++++--------- R/sm_bland_altman.R | 36 ++-- R/sm_boxplot2.R | 101 ++++++----- R/sm_ci.R | 12 - R/sm_classic.R | 40 ++-- R/sm_color.R | 89 +++++++--- R/sm_common_axis.R | 46 ++--- R/sm_common_legend.R | 58 +++--- R/sm_common_title.R | 14 - R/sm_common_xlabel.R | 13 - R/sm_common_ylabel.R | 15 - R/sm_corr_avgErr.R | 113 +++++++------ R/sm_effsize.R | 9 - R/sm_forest2.R | 159 +++++++++++------- R/sm_forest_annot.R | 99 ++++++----- R/sm_hgrid.R | 110 +++++++----- R/sm_hist.R | 112 +++++++------ R/sm_hvgrid.R | 93 +++++----- R/sm_hvgrid_minor.R | 81 ++++----- R/sm_minimal.R | 51 ++--- R/sm_palette.R | 25 +- R/sm_panel_label.R | 57 +++--- R/sm_plot_clean.R | 45 ++--- R/sm_pointplot.R | 126 +++++++++----- R/sm_power.R | 21 +- R/sm_put_together.R | 417 +++++++++++++++++++++++-------------------------- R/sm_raincloud.R | 257 ++++++++++++++++++------------ R/sm_slope.R | 294 ++++++++++++++++++++++------------ R/sm_slope_all.R | 78 ++++----- R/sm_slope_mean.R | 273 ++++++++++++++++++++------------ R/sm_slope_theme.R | 58 +++--- R/sm_statBlandAlt.R | 32 +-- R/sm_statCorr.R | 88 +++++----- R/sm_stdErr.R | 6 R/sm_vgrid.R | 85 +++++---- R/sm_violin.R | 184 ++++++++++++++------- README.md | 2 inst/CITATION | 39 +++- man/sm_bar.Rd | 98 ++++++++--- man/sm_boxplot.Rd | 41 ++-- man/sm_classic.Rd | 2 man/sm_hgrid.Rd | 2 man/sm_hvgrid.Rd | 2 man/sm_minimal.Rd | 2 man/sm_palette.Rd | 4 man/sm_put_together.Rd | 179 +++++++++------------ man/sm_raincloud.Rd | 127 +++++++++----- man/sm_slope.Rd | 128 ++++++++++----- man/sm_slope_mean.Rd | 103 +++++++----- man/sm_violin.Rd | 96 +++++++---- 57 files changed, 2710 insertions(+), 1966 deletions(-)
Title: Tools for Descriptive Statistics
Description: A collection of miscellaneous basic statistic functions and convenience wrappers for efficiently describing data. The author's intention was to create a toolbox, which facilitates the (notoriously time consuming) first descriptive tasks in data analysis, consisting of calculating descriptive statistics, drawing graphical summaries and reporting the results. The package contains furthermore functions to produce documents using MS Word (or PowerPoint) and functions to import data from Excel. Many of the included functions can be found scattered in other packages and other sources written partly by Titans of R. The reason for collecting them here, was primarily to have them consolidated in ONE instead of dozens of packages (which themselves might depend on other packages which are not needed at all), and to provide a common and consistent interface as far as function and arguments naming, NA handling, recycling rules etc. are concerned. Google style guides were used as naming rules (in ab [...truncated...]
Author: Andri Signorell [aut, cre] ,
Ken Aho [ctb],
Andreas Alfons [ctb],
Nanina Anderegg [ctb],
Tomas Aragon [ctb],
Chandima Arachchige [ctb],
Antti Arppe [ctb],
Adrian Baddeley [ctb],
Kamil Barton [ctb],
Ben Bolker [ctb],
Hans W. Borchers [ctb],
Frederico [...truncated...]
Maintainer: Andri Signorell <andri@signorell.net>
Diff between DescTools versions 0.99.58 dated 2024-11-08 and 0.99.59 dated 2025-01-26
DESCRIPTION | 8 - MD5 | 45 +++-- NAMESPACE | 4 NEWS | 25 ++- R/Abstract.R | 1 R/CountCompCases.R |only R/Desc.R | 7 R/DescTools.r | 400 --------------------------------------------------- R/KendallW.R |only R/Mod_BrierScore.R | 21 ++ R/Mod_BrierScoreCI.R | 11 - R/Mod_TMod.R | 57 +++---- R/PlotFdist.R |only R/StatsAndCIs.r | 233 ++++++++++------------------- R/SumCI.R |only build/vignette.rds |binary man/BrierScore.Rd | 35 +--- man/BrierScoreCI.Rd | 3 man/ConnLines.Rd | 23 +- man/CutAge.Rd | 41 ++--- man/KendallW.Rd | 190 ++++++++++++++---------- man/MultinomCI.Rd | 23 ++ man/PlotFdist.Rd | 349 ++++++++++++++++++++++++-------------------- man/Skew.Rd | 6 man/SumCI.Rd |only man/TMod.Rd | 7 26 files changed, 579 insertions(+), 910 deletions(-)
Title: Build a Package from Rmarkdown Files
Description: Use Rmarkdown First method to build your package. Start your
package with documentation, functions, examples and tests in the same
unique file. Everything can be set from the Rmarkdown template file
provided in your project, then inflated as a package. Inflating the
template copies the relevant chunks and sections in the appropriate
files required for package development.
Author: Sebastien Rochette [aut] ,
Vincent Guyader [aut, cre] ,
Yohann Mansiaux [aut],
ThinkR [cph]
Maintainer: Vincent Guyader <vincent@thinkr.fr>
Diff between fusen versions 0.7.0 dated 2025-01-14 and 0.7.1 dated 2025-01-26
DESCRIPTION | 6 MD5 | 24 - NEWS.md | 6 inst/doc/How-to-use-fusen.R | 104 ++--- inst/doc/Maintain-packages-with-fusen.R | 48 +- inst/doc/deal-with-a-fusen-flat-file.R | 54 +- inst/doc/draw-a-tree-of-your-package-files-and-functions.html | 10 inst/doc/inflate-all-your-flat-files.R | 122 ++--- inst/doc/register-files-in-config.R | 142 +++--- inst/doc/share-on-a-github-website.R | 40 - inst/doc/switch-from-a-package-developed-with-fusen-to-a-classical-package.R | 208 +++++----- inst/doc/tips-and-tricks.R | 26 - tests/testthat/test-add_flat_template.R | 2 13 files changed, 400 insertions(+), 392 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-01-11 0.1.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-03-01 1.1.0
2021-10-21 1.0.0
2021-01-19 0.4.0
2020-08-24 0.3.1
2020-06-23 0.3.0
2019-09-12 0.2.0
2019-06-14 0.1