Title: Bayesian SVARs with Sign, Zero, and Narrative Restrictions
Description: Implements state-of-the-art algorithms for the Bayesian analysis of Structural Vector Autoregressions (SVARs) identified by sign, zero, and narrative restrictions. The core model is based on a flexible Vector Autoregression with estimated hyper-parameters of the Minnesota prior and the dummy observation priors as in Giannone, Lenza, Primiceri (2015) <doi:10.1162/REST_a_00483>. The sign restrictions are implemented employing the methods proposed by Rubio-Ramírez, Waggoner & Zha (2010) <doi:10.1111/j.1467-937X.2009.00578.x>, while identification through sign and zero restrictions follows the approach developed by Arias, Rubio-Ramírez, & Waggoner (2018) <doi:10.3982/ECTA14468>. Furthermore, our tool provides algorithms for identification via sign and narrative restrictions, in line with the methods introduced by Antolín-Díaz and Rubio-Ramírez (2018) <doi:10.1257/aer.20161852>. Users can also estimate a model with sign, zero, and narrative restrictions impos [...truncated...]
Author: Xiaolei Wang [aut, cre] ,
Tomasz Wozniak [aut]
Maintainer: Xiaolei Wang <adamwang15@gmail.com>
Diff between bsvarSIGNs versions 1.0.1 dated 2024-08-17 and 2.0 dated 2025-01-29
DESCRIPTION | 17 +++--- MD5 | 26 ++++++---- NEWS.md | 5 ++ R/bsvarSIGNs-package.R | 3 - R/specify.R | 2 README.md | 84 +++++++++++++++++++++++++--------- build |only inst/CITATION |only inst/doc |only inst/include/bsvarSIGNs_RcppExports.h | 4 - man/bsvarSIGNs-package.Rd | 3 - src/RcppExports.cpp | 12 ++-- src/compute.cpp | 8 +-- src/compute.h | 8 +-- vignettes |only 15 files changed, 115 insertions(+), 57 deletions(-)
Title: Working with Audio and Video in R
Description: Bindings to 'FFmpeg' <http://www.ffmpeg.org/> AV library for working with
audio and video in R. Generates high quality video from images or R graphics with
custom audio. Also offers high performance tools for reading raw audio, creating
'spectrograms', and converting between countless audio / video formats. This package
interfaces directly to the C API and does not require any command line utilities.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between av versions 0.9.3 dated 2024-11-09 and 0.9.4 dated 2025-01-29
DESCRIPTION | 10 +++++----- MD5 | 26 +++++++++++++------------- NEWS | 6 ++++++ R/images.R | 14 ++++++++++++-- configure | 2 -- man/av_video_images.Rd | 17 ++++++++++++++++- src/Makevars.win | 20 ++++++++++++++++---- src/avcompat.h | 2 +- src/formats.c | 14 ++++++-------- src/video.c | 6 +++++- tests/testthat/test-audio.R | 2 +- tests/testthat/test-fft.R | 5 +++-- tests/testthat/test-formats.R | 12 ++++++++++++ tests/testthat/test-video.R | 9 +++++++-- 14 files changed, 103 insertions(+), 42 deletions(-)
Title: Process and Report 'GreenFeed' Data
Description: Provides tools for downloading, processing, and reporting daily and finalized 'GreenFeed' data.
Author: Guillermo Martinez-Boggio [cre, aut, cph]
,
Meredith Harrison [ctb],
Patrick Lutz [ctb]
Maintainer: Guillermo Martinez-Boggio <guillermo.martinezboggio@wisc.edu>
Diff between greenfeedr versions 1.0.1 dated 2024-10-31 and 1.1.0 dated 2025-01-29
DESCRIPTION | 6 - MD5 | 45 ++++--- NAMESPACE | 1 NEWS.md | 4 R/compare_gfdata.R |only R/get_gfdata.R | 27 ++-- R/process_gfdata.R | 44 ++++--- R/report_gfdata.R | 23 +--- R/utils.R | 15 ++ R/viseat.R | 6 - README.md | 256 ++++++++++++++++++++++----------------------- inst/CITATION |only inst/DailyReportsGF.Rmd | 8 - inst/doc/greenfeedr.R | 2 inst/doc/greenfeedr.Rmd | 2 inst/doc/greenfeedr.html | 9 + man/compare_gfdata.Rd |only man/figures/CheatSheet.pdf |binary man/figures/CheatSheet.png |binary man/filter_within_range.Rd | 6 - man/get_gfdata.Rd | 27 ++-- man/process_gfdata.Rd | 8 - man/report_gfdata.Rd | 17 +- man/viseat.Rd | 2 vignettes/greenfeedr.Rmd | 2 25 files changed, 269 insertions(+), 241 deletions(-)
Title: Robust Bayesian Longitudinal Regularized Semiparametric Mixed
Models
Description: Our recently developed fully robust Bayesian semiparametric mixed-effect model for high-dimensional longitudinal studies with heterogeneous observations can be implemented through this package. This model can distinguish between time-varying interactions and constant-effect-only cases to avoid model misspecifications. Facilitated by spike-and-slab priors, this model leads to superior performance in estimation, identification and statistical inference. In particular, robust Bayesian inferences in terms of valid Bayesian credible intervals on both parametric and nonparametric effects can be validated on finite samples. The Markov chain Monte Carlo algorithms of the proposed and alternative models are efficiently implemented in 'C++'.
Author: Kun Fan [aut, cre],
Cen Wu [aut]
Maintainer: Kun Fan <kfan@ksu.edu>
Diff between Blend versions 0.1.1 dated 2025-01-20 and 0.1.1.1 dated 2025-01-29
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- README.md | 23 +++++++++++++++++++++-- 3 files changed, 27 insertions(+), 8 deletions(-)
Title: REDCap Metadata Casting and Castellated Data Handling
Description: Casting metadata for REDCap database creation and handling of
castellated data using repeated instruments and longitudinal projects in
'REDCap'. Keeps a focused data export approach, by allowing to only export
required data from the database. Also for casting new REDCap databases based
on datasets from other sources.
Originally forked from the R part of 'REDCapRITS' by Paul Egeler.
See <https://github.com/pegeler/REDCapRITS>.
'REDCap' (Research Electronic Data Capture) is a secure, web-based software
platform designed to support data capture for research studies, providing
1) an intuitive interface for validated data capture; 2) audit trails for
tracking data manipulation and export procedures; 3) automated export
procedures for seamless data downloads to common statistical packages; and
4) procedures for data integration and interoperability with external
sources (Harris et al (2009) <doi:10.1016/j.jbi.2008.08.010>;
Harris et al (2019) <doi:10.1016/j.jbi.2019.103208> [...truncated...]
Author: Andreas Gammelgaard Damsbo [aut, cre]
,
Paul Egeler [aut]
Maintainer: Andreas Gammelgaard Damsbo <agdamsbo@clin.au.dk>
Diff between REDCapCAST versions 24.12.1 dated 2024-12-02 and 25.1.1 dated 2025-01-29
REDCapCAST-24.12.1/REDCapCAST/man/figures |only REDCapCAST-25.1.1/REDCapCAST/DESCRIPTION | 18 REDCapCAST-25.1.1/REDCapCAST/MD5 | 47 - REDCapCAST-25.1.1/REDCapCAST/NAMESPACE | 8 REDCapCAST-25.1.1/REDCapCAST/NEWS.md | 18 REDCapCAST-25.1.1/REDCapCAST/R/ds2dd_detailed.R | 24 REDCapCAST-25.1.1/REDCapCAST/R/easy_redcap.R | 19 REDCapCAST-25.1.1/REDCapCAST/R/fct_drop.R | 24 REDCapCAST-25.1.1/REDCapCAST/R/read_redcap_tables.R | 12 REDCapCAST-25.1.1/REDCapCAST/R/shiny_cast.R | 16 REDCapCAST-25.1.1/REDCapCAST/R/utils.r | 23 REDCapCAST-25.1.1/REDCapCAST/inst/WORDLIST | 1 REDCapCAST-25.1.1/REDCapCAST/inst/doc/REDCapCAST.R | 5 REDCapCAST-25.1.1/REDCapCAST/inst/doc/REDCapCAST.Rmd | 7 REDCapCAST-25.1.1/REDCapCAST/inst/doc/REDCapCAST.html | 359 +++++----- REDCapCAST-25.1.1/REDCapCAST/inst/shiny-examples/casting/app.R | 94 +- REDCapCAST-25.1.1/REDCapCAST/inst/shiny-examples/casting/rsconnect/shinyapps.io/agdamsbo/redcapcast.dcf | 2 REDCapCAST-25.1.1/REDCapCAST/man/REDCapCAST-package.Rd | 2 REDCapCAST-25.1.1/REDCapCAST/man/apply_factor_labels.Rd | 2 REDCapCAST-25.1.1/REDCapCAST/man/clean_redcap_name.Rd | 3 REDCapCAST-25.1.1/REDCapCAST/man/cut_string_length.Rd |only REDCapCAST-25.1.1/REDCapCAST/man/ds2dd_detailed.Rd | 2 REDCapCAST-25.1.1/REDCapCAST/man/easy_redcap.Rd | 8 REDCapCAST-25.1.1/REDCapCAST/man/fct_drop.Rd | 17 REDCapCAST-25.1.1/REDCapCAST/vignettes/REDCapCAST.Rmd | 7 25 files changed, 435 insertions(+), 283 deletions(-)
Title: Analyze Nominal Response Data with the Multinomial-Poisson Trick
Description: Dichotomous responses having two categories can be analyzed
with stats::glm() or lme4::glmer() using the family=binomial option.
Unfortunately, polytomous responses with three or more unordered
categories cannot be analyzed similarly because there is no analogous
family=multinomial option. For between-subjects data,
nnet::multinom() can address this need, but it cannot handle random
factors and therefore cannot handle repeated measures. To address this
gap, we transform nominal response data into counts for each categorical
alternative. These counts are then analyzed using (mixed) Poisson regression
as per Baker (1994) <doi:10.2307/2348134>. Omnibus analyses of variance can be
run along with post hoc pairwise comparisons. For users wishing to analyze nominal
responses from surveys or experiments, the functions in this package essentially
act as though stats::glm() or lme4::glmer() had a family=multinomial option.
Author: Jacob O. Wobbrock [aut, cre, cph]
Maintainer: Jacob O. Wobbrock <wobbrock@uw.edu>
Diff between multpois versions 0.2.0 dated 2024-10-22 and 0.3.2 dated 2025-01-29
DESCRIPTION | 8 - MD5 | 64 ++++----- NAMESPACE | 1 NEWS.md | 47 ++++++ R/Anova.mp.R | 25 +-- R/Data.R | 22 +-- R/glm.mp.R | 15 +- R/glm.mp.con.R | 9 - R/glmer.mp.R | 33 +++- R/glmer.mp.con.R | 38 ++++- README.md | 28 +-- build/partial.rdb |binary build/vignette.rds |binary data/bs2.rda |binary data/bs3.rda |binary data/icecream.rda |binary data/ws2.rda |binary data/ws3.rda |binary inst/WORDLIST | 1 inst/doc/multpois.R | 42 ++--- inst/doc/multpois.Rmd | 104 +++++++------- inst/doc/multpois.html | 345 ++++++++++++++++++++++++------------------------- man/Anova.mp.Rd | 8 - man/bs2.Rd | 2 man/bs3.Rd | 2 man/glm.mp.Rd | 6 man/glm.mp.con.Rd | 3 man/glmer.mp.Rd | 14 + man/glmer.mp.con.Rd | 17 +- man/icecream.Rd | 12 - man/ws2.Rd | 2 man/ws3.Rd | 4 vignettes/multpois.Rmd | 104 +++++++------- 33 files changed, 545 insertions(+), 411 deletions(-)
Title: Extract, Format, and Print Statistical Output
Description: Provides functions that format statistical output in a way that
can be inserted into R Markdown documents. This is analogous to the
apa_print() functions in the 'papaja' package but prints Markdown
or LaTeX syntax.
Author: Jeffrey R. Stevens [aut, cre, cph]
Maintainer: Jeffrey R. Stevens <jeffrey.r.stevens@protonmail.com>
Diff between cocoon versions 0.1.0 dated 2024-11-05 and 0.2.0 dated 2025-01-29
DESCRIPTION | 12 MD5 | 89 +++-- NAMESPACE | 6 NEWS.md | 6 R/cocoon-package.R | 2 R/format_numbers.R | 44 +- R/format_stats.R | 313 +----------------- R/format_stats_BFBayesFactor.R |only R/format_stats_aov.R |only R/format_stats_easycorrelation.R |only R/format_stats_htest.R |only R/format_stats_lm.R |only R/format_stats_lmerTest.R |only R/format_stats_merMod.R |only R/format_statvalues.R | 127 ++++--- R/format_summary.R | 137 ++++---- R/import-standalone-obj-type.R |only R/import-standalone-types-check.R |only R/utils.R |only README.md | 22 + build/vignette.rds |binary inst/CITATION | 4 inst/doc/cocoon.R | 32 + inst/doc/cocoon.Rmd | 108 +++++- inst/doc/cocoon.html | 354 +++++++++++++++++++-- inst/logo/logo.R | 14 man/format_bf.Rd | 20 - man/format_chr.Rd | 6 man/format_corr.Rd | 18 - man/format_num.Rd | 6 man/format_p.Rd | 12 man/format_scientific.Rd | 6 man/format_stats.BFBayesFactor.Rd | 22 - man/format_stats.Rd | 27 + man/format_stats.aov.Rd |only man/format_stats.easycorrelation.Rd | 20 - man/format_stats.htest.Rd | 24 - man/format_stats.lm.Rd |only man/format_stats.lmerModLmerTest.Rd |only man/format_stats.merMod.Rd |only man/format_sub.Rd | 4 man/format_summary.Rd | 28 - man/format_ttest.Rd | 24 - tests/testthat/helper.R | 16 tests/testthat/test-format_numbers.R | 26 - tests/testthat/test-format_stats.R | 196 ----------- tests/testthat/test-format_stats_BFBayesFactor.R |only tests/testthat/test-format_stats_aov.R |only tests/testthat/test-format_stats_easycorrelation.R |only tests/testthat/test-format_stats_htest.R |only tests/testthat/test-format_stats_lm.R |only tests/testthat/test-format_stats_lmerModLmerTest.R |only tests/testthat/test-format_stats_merMod.R |only tests/testthat/test-format_statvalues.R | 32 - tests/testthat/test-format_summary.R | 18 - vignettes/cocoon.Rmd | 108 +++++- 56 files changed, 1013 insertions(+), 870 deletions(-)
Title: Network Analysis and Causal Inference Through Structural
Equation Modeling
Description: Estimate networks and causal relationships in complex systems through
Structural Equation Modeling. This package also includes functions for importing,
weight, manipulate, and fit biological network models within the
Structural Equation Modeling framework as outlined in the Supplementary Material of
Grassi M, Palluzzi F, Tarantino B (2022) <doi:10.1093/bioinformatics/btac567>.
Author: Mario Grassi [aut],
Fernando Palluzzi [aut],
Barbara Tarantino [cre]
Maintainer: Barbara Tarantino <barbara.tarantino01@universitadipavia.it>
Diff between SEMgraph versions 1.2.2 dated 2024-07-22 and 1.2.3 dated 2025-01-29
DESCRIPTION | 18 +++++------ MD5 | 30 +++++++++---------- NEWS.md | 7 +++- R/ALSdata.R | 2 - R/keggInteractome.R | 7 +--- R/keggPathways.R | 4 +- R/semFit.R | 54 +++++++++++++++++------------------ R/semLearn.R | 24 ++++++++------- R/semUtils.R | 72 ++++++++++++++++++++++------------------------- build/partial.rdb |binary data/kegg.RData |binary data/kegg.pathways.RData |binary man/SEMdag.Rd | 2 - man/alsData.Rd | 2 - man/kegg.Rd | 7 +--- man/kegg.pathways.Rd | 4 +- 16 files changed, 117 insertions(+), 116 deletions(-)
Title: Nonnegative Garrote Method Incorporating Hierarchical
Relationships
Description: An implementation of the nonnegative garrote method that incorporates hierarchical relationships among variables. The core function, HiGarrote(), offers an automated approach for analyzing experiments while respecting hierarchical structures among effects. For methodological details, refer to Yu and Joseph (2024) <doi:10.48550/arXiv.2411.01383>. This work is supported by U.S. National Science Foundation grant DMS-2310637.
Author: Wei-Yang Yu [aut, cre],
V. Roshan Joseph [aut]
Maintainer: Wei-Yang Yu <wyu322@gatech.edu>
Diff between HiGarrote versions 1.0 dated 2024-11-14 and 1.0.1 dated 2025-01-29
DESCRIPTION | 8 ++-- MD5 | 11 +++--- NEWS.md |only R/HiGarrote.R | 7 +++- R/RcppExports.R | 12 ++++++- src/RcppExports.cpp | 45 ++++++++++++++++++++++----- src/lib.cpp | 84 +++++++++++++++++++++++++++++++++++----------------- 7 files changed, 120 insertions(+), 47 deletions(-)
Title: Create the Tree of Science from WoS and Scopus
Description: The goal of 'tosr' is to create the Tree of Science from
Web of Science (WoS) and Scopus data. It can read files
from both sources at the same time. More information
can be found in Valencia-Hernández (2020)
<https://revistas.unal.edu.co/index.php/ingeinv/article/view/77718>.
Author: Sebastian Robledo [aut, cre] ,
Martha Zuluaga [aut] ,
Oscar Arbelaez Echeverry [aut]
,
Luis Alexander Valencia Hernandez [aut],
Centro de Bioinformatica y Biologia computacional de Colombia - BIOS
[cph, fnd]
Maintainer: Sebastian Robledo <sebastian.robledo@gmail.com>
Diff between tosr versions 0.1.4 dated 2024-01-14 and 0.1.5 dated 2025-01-29
DESCRIPTION | 54 ++++++++++++++++++++-------------------- MD5 | 11 ++++---- NEWS.md |only build/vignette.rds |binary inst/doc/ToS-dummy.R | 2 - inst/doc/ToS-dummy.html | 4 +- tests/testthat/test-tosr_load.R | 2 - 7 files changed, 37 insertions(+), 36 deletions(-)
Title: Helpers for Model Coefficients Tibbles
Description: Provides suite of functions to work with regression model
'broom::tidy()' tibbles. The suite includes functions to group
regression model terms by variable, insert reference and header rows
for categorical variables, add variable labels, and more.
Author: Joseph Larmarange [aut, cre] ,
Daniel D. Sjoberg [aut]
Maintainer: Joseph Larmarange <joseph@larmarange.net>
Diff between broom.helpers versions 1.18.0 dated 2025-01-07 and 1.19.0 dated 2025-01-29
DESCRIPTION | 11 MD5 | 90 ++-- NAMESPACE | 1 NEWS.md | 8 R/broom.helpers-package.R | 1 R/custom_tidiers.R | 2 R/marginal_tidiers.R | 89 ---- R/model_get_pairwise_contrasts.R | 3 R/select_utilities.R | 8 R/tidy_add_pairwise_contrasts.R | 2 build/vignette.rds |binary inst/doc/tidy.html | 330 +++++++-------- man/model_get_pairwise_contrasts.Rd | 3 man/tidy_add_pairwise_contrasts.Rd | 2 man/tidy_all_effects.Rd | 2 man/tidy_avg_comparisons.Rd | 2 man/tidy_avg_slopes.Rd | 2 man/tidy_ggpredict.Rd | 2 man/tidy_marginal_contrasts.Rd | 2 man/tidy_marginal_means.Rd | 56 -- man/tidy_marginal_predictions.Rd | 2 man/tidy_margins.Rd | 1 man/tidy_multgee.Rd | 1 man/tidy_zeroinfl.Rd | 1 tests/testthat.R | 8 tests/testthat/test-add_coefficients_type.R | 106 ++--- tests/testthat/test-add_contrasts.R | 60 +- tests/testthat/test-add_estimate_to_reference_rows.R | 92 ++-- tests/testthat/test-add_header_rows.R | 60 +- tests/testthat/test-add_n.R | 150 +++---- tests/testthat/test-add_pairwise_contrasts.R | 14 tests/testthat/test-add_reference_rows.R | 41 + tests/testthat/test-add_term_labels.R | 125 +++--- tests/testthat/test-add_variable_labels.R | 99 ++-- tests/testthat/test-assert_package.R | 15 tests/testthat/test-attach_and_detach.R | 7 tests/testthat/test-disambiguate_terms.R | 16 tests/testthat/test-helpers.R | 5 tests/testthat/test-identify_variables.R | 164 ++++--- tests/testthat/test-marginal_tidiers.R | 266 ++++-------- tests/testthat/test-model_get_n.R | 217 +++++----- tests/testthat/test-remove_intercept.R | 5 tests/testthat/test-select_helpers.R | 5 tests/testthat/test-select_variables.R | 40 - tests/testthat/test-tidy_parameters.R | 35 - tests/testthat/test-tidy_plus_plus.R | 394 ++++++++----------- 46 files changed, 1180 insertions(+), 1365 deletions(-)
More information about reproducibleRchunks at CRAN
Permanent link
Title: Quantile Regression
Description: Estimation and inference methods for models for conditional quantile functions:
Linear and nonlinear parametric and non-parametric (total variation penalized) models
for conditional quantiles of a univariate response and several methods for handling
censored survival data. Portfolio selection methods based on expected shortfall
risk are also now included. See Koenker, R. (2005) Quantile Regression, Cambridge U. Press,
<doi:10.1017/CBO9780511754098> and Koenker, R. et al. (2017) Handbook of Quantile Regression,
CRC Press, <doi:10.1201/9781315120256>.
Author: Roger Koenker [cre, aut],
Stephen Portnoy [ctb] ,
Pin Tian Ng [ctb] ,
Blaise Melly [ctb] ,
Achim Zeileis [ctb] ,
Philip Grosjean [ctb] ,
Cleve Moler [ctb] ,
Yousef Saad [ctb] ,
Victor Chernozhukov [ctb] ,
Ivan Fernandez-Val [ctb] ,
Martin Maechler [c [...truncated...]
Maintainer: Roger Koenker <rkoenker@illinois.edu>
Diff between quantreg versions 5.99.1 dated 2024-11-22 and 6.00 dated 2025-01-29
DESCRIPTION | 6 +++--- MD5 | 4 ++-- build/vignette.rds |binary 3 files changed, 5 insertions(+), 5 deletions(-)
Title: Most Likely Transformations
Description: Likelihood-based estimation of conditional transformation
models via the most likely transformation approach described in
Hothorn et al. (2018) <DOI:10.1111/sjos.12291> and Hothorn (2020)
<DOI:10.18637/jss.v092.i01>. Shift-scale (Siegfried et al, 2023, <DOI:10.1080/00031305.2023.2203177>)
and multivariate (Klein et al, 2022, <DOI:10.1111/sjos.12501>) transformation models
are part of this package. A package vignette is available from <DOI:10.32614/CRAN.package.mlt.docreg> and
more convenient user interfaces to many models from <DOI:10.32614/CRAN.package.tram>.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between mlt versions 1.6-1 dated 2024-11-18 and 1.6-2 dated 2025-01-29
DESCRIPTION | 15 ++++++++------- MD5 | 14 +++++++------- NAMESPACE | 2 +- R/mlt.R | 12 ++++++++++-- R/mmlt.R | 4 +++- inst/NEWS.Rd | 10 ++++++++++ tests/bugfixes.R | 17 +++++++---------- tests/bugfixes.Rout.save | 33 +++++++++------------------------ 8 files changed, 55 insertions(+), 52 deletions(-)
Title: A Tool for Semi-Automating the Statistical Disclosure Control of
Research Outputs
Description: Assists researchers and output checkers by distinguishing between research output that is safe to publish, output that requires further analysis, and output that cannot be published because of substantial disclosure risk. A paper about the tool was presented at the UNECE Expert Meeting on Statistical Data Confidentiality 2023; see <https://uwe-repository.worktribe.com/output/11060964>.
Author: Jim Smith [cre, ctb] ,
Maha Albashir [aut, ctb],
Richard John Preen [aut, ctb]
Maintainer: Jim Smith <James.Smith@uwe.ac.uk>
Diff between acro versions 0.1.3 dated 2024-10-22 and 0.1.4 dated 2025-01-29
DESCRIPTION | 8 +++---- MD5 | 10 ++++----- NEWS.md | 4 +++ R/create_virtualenv.R | 4 +-- README.md | 49 +++++++++++++--------------------------------- tests/testthat/Rplots.pdf |binary 6 files changed, 29 insertions(+), 46 deletions(-)
Title: Transformation Trees and Forests
Description: Recursive partytioning of transformation models with
corresponding random forest for conditional transformation models
as described in 'Transformation Forests' (Hothorn and Zeileis, 2021, <doi:10.1080/10618600.2021.1872581>)
and 'Top-Down Transformation Choice' (Hothorn, 2018, <DOI:10.1177/1471082X17748081>).
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between trtf versions 0.4-2 dated 2023-02-10 and 0.4-3 dated 2025-01-29
DESCRIPTION | 12 +++++++----- MD5 | 14 +++++++------- build/partial.rdb |binary demo/00Index | 6 +++--- demo/BMI.R | 50 +++++++++++++++++++++++++++++++++----------------- demo/QRF.R | 12 +++++++++++- demo/applications.R | 43 ++++++++++++++++++++++++------------------- inst/NEWS.Rd | 7 +++++++ 8 files changed, 92 insertions(+), 52 deletions(-)
Title: Simultaneous Inference in General Parametric Models
Description: Simultaneous tests and confidence intervals
for general linear hypotheses in parametric models, including
linear, generalized linear, linear mixed effects, and survival models.
The package includes demos reproducing analyzes presented
in the book "Multiple Comparisons Using R" (Bretz, Hothorn,
Westfall, 2010, CRC Press).
Author: Torsten Hothorn [aut, cre] ,
Frank Bretz [aut],
Peter Westfall [aut],
Richard M. Heiberger [ctb],
Andre Schuetzenmeister [ctb],
Susan Scheibe [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between multcomp versions 1.4-26 dated 2024-07-18 and 1.4-28 dated 2025-01-29
DESCRIPTION | 11 ++++++----- MD5 | 28 ++++++++++++++-------------- build/vignette.rds |binary data/cholesterol.rda |binary data/litter.rda |binary demo/Ch_Appl.R | 10 +++++----- demo/Ch_GLM.R | 2 +- demo/Ch_Intro.R | 2 +- demo/Ch_Misc.R | 1 + demo/Ch_Theory.R | 2 +- inst/NEWS | 8 ++++++++ inst/doc/chfls1.pdf |binary inst/doc/generalsiminf.pdf |binary inst/doc/multcomp-examples.pdf |binary tests/Examples/multcomp-Ex.Rout.save | 8 ++++---- 15 files changed, 41 insertions(+), 31 deletions(-)
Title: Tools for Reading and Writing ISO/OGC Geographic Metadata
Description: Provides facilities to read, write and validate geographic metadata
defined with ISO TC211 / OGC ISO geographic information metadata standards, and
encoded using the ISO 19139 and ISO 19115-3 (XML) standard technical specifications.
This includes ISO 19110 (Feature cataloguing), 19115 (dataset metadata), 19119 (service metadata)
and 19136 (GML). Other interoperable schemas from the OGC are progressively supported
as well, such as the Sensor Web Enablement (SWE) Common Data Model, the OGC GML
Coverage Implementation Schema (GMLCOV), or the OGC GML Referenceable Grid (GMLRGRID).
Author: Emmanuel Blondel [aut, cre] ,
R Consortium [fnd]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between geometa versions 0.8-0 dated 2024-04-18 and 0.9 dated 2025-01-29
geometa-0.8-0/geometa/R/ISOHierarchyLevel.R |only geometa-0.8-0/geometa/R/ISOIdentifier.R |only geometa-0.8-0/geometa/R/ISOParameter.R |only geometa-0.8-0/geometa/R/ISOStatus.R |only geometa-0.8-0/geometa/R/readISO19139.R |only geometa-0.8-0/geometa/inst/extdata/schemas/gco |only geometa-0.8-0/geometa/inst/extdata/schemas/gfc |only geometa-0.8-0/geometa/inst/extdata/schemas/gmd |only geometa-0.8-0/geometa/inst/extdata/schemas/gmi |only geometa-0.8-0/geometa/inst/extdata/schemas/gmx |only geometa-0.8-0/geometa/inst/extdata/schemas/gsr |only geometa-0.8-0/geometa/inst/extdata/schemas/gss |only geometa-0.8-0/geometa/inst/extdata/schemas/gts |only geometa-0.8-0/geometa/inst/extdata/schemas/srv |only geometa-0.8-0/geometa/man/ISOContentInformation.Rd |only geometa-0.8-0/geometa/man/ISOHierarchyLevel.Rd |only geometa-0.8-0/geometa/man/ISOIdentifier.Rd |only geometa-0.8-0/geometa/man/ISOParameter.Rd |only geometa-0.8-0/geometa/tests/testthat/test_ISOIdentifier.R |only geometa-0.8-0/geometa/tests/testthat/test_ISOParameter.R |only geometa-0.8-0/geometa/tests/testthat/test_ISOScope.R |only geometa-0.9/geometa/DESCRIPTION | 19 geometa-0.9/geometa/MD5 | 1915 ++++++---- geometa-0.9/geometa/NAMESPACE | 101 geometa-0.9/geometa/R/GMLAbstractCRS.R | 8 geometa-0.9/geometa/R/GMLAbstractCoordinateOperation.R | 8 geometa-0.9/geometa/R/GMLAbstractCoordinateSystem.R | 8 geometa-0.9/geometa/R/GMLAbstractCoverage.R | 8 geometa-0.9/geometa/R/GMLAbstractCurve.R | 4 geometa-0.9/geometa/R/GMLAbstractDiscreteCoverage.R | 8 geometa-0.9/geometa/R/GMLAbstractFeature.R | 8 geometa-0.9/geometa/R/GMLAbstractGML.R | 8 geometa-0.9/geometa/R/GMLAbstractGeneralConversion.R | 4 geometa-0.9/geometa/R/GMLAbstractGeneralDerivedCRS.R | 4 geometa-0.9/geometa/R/GMLAbstractGeneralOperationParameter.R | 4 geometa-0.9/geometa/R/GMLAbstractGeneralParameterValue.R | 8 geometa-0.9/geometa/R/GMLAbstractGeometricAggregate.R | 4 geometa-0.9/geometa/R/GMLAbstractGeometricPrimitive.R | 4 geometa-0.9/geometa/R/GMLAbstractGeometry.R | 14 geometa-0.9/geometa/R/GMLAbstractImplicitGeometry.R | 8 geometa-0.9/geometa/R/GMLAbstractObject.R | 10 geometa-0.9/geometa/R/GMLAbstractReferenceableGrid.R | 8 geometa-0.9/geometa/R/GMLAbstractRing.R | 4 geometa-0.9/geometa/R/GMLAbstractSingleCRS.R | 4 geometa-0.9/geometa/R/GMLAbstractSingleOperation.R | 4 geometa-0.9/geometa/R/GMLAbstractSurface.R | 4 geometa-0.9/geometa/R/GMLAbstractTimeGeometricPrimitive.R | 8 geometa-0.9/geometa/R/GMLAbstractTimeObject.R | 8 geometa-0.9/geometa/R/GMLAbstractTimePrimitive.R | 8 geometa-0.9/geometa/R/GMLAffineCS.R | 4 geometa-0.9/geometa/R/GMLBaseUnit.R | 8 geometa-0.9/geometa/R/GMLCOVAbstractCoverage.R | 10 geometa-0.9/geometa/R/GMLCOVExtension.R | 8 geometa-0.9/geometa/R/GMLCartesianCS.R | 4 geometa-0.9/geometa/R/GMLCodeType.R | 8 geometa-0.9/geometa/R/GMLCompoundCRS.R | 8 geometa-0.9/geometa/R/GMLConventionalUnit.R | 8 geometa-0.9/geometa/R/GMLConversion.R | 4 geometa-0.9/geometa/R/GMLCoordinateSystemAxis.R | 8 geometa-0.9/geometa/R/GMLCoverages.R | 38 geometa-0.9/geometa/R/GMLCylindricalCS.R | 4 geometa-0.9/geometa/R/GMLDefinition.R | 8 geometa-0.9/geometa/R/GMLDerivedCRS.R | 4 geometa-0.9/geometa/R/GMLDerivedUnit.R | 8 geometa-0.9/geometa/R/GMLElement.R | 10 geometa-0.9/geometa/R/GMLEllipsoidalCS.R | 4 geometa-0.9/geometa/R/GMLEnvelope.R | 10 geometa-0.9/geometa/R/GMLEnvelopeWithTimePeriod.R | 10 geometa-0.9/geometa/R/GMLGeneralGridAxis.R | 10 geometa-0.9/geometa/R/GMLGeodeticCRS.R | 4 geometa-0.9/geometa/R/GMLGrid.R | 8 geometa-0.9/geometa/R/GMLGridEnvelope.R | 6 geometa-0.9/geometa/R/GMLGridFunction.R | 8 geometa-0.9/geometa/R/GMLLineString.R | 8 geometa-0.9/geometa/R/GMLLinearCS.R | 6 geometa-0.9/geometa/R/GMLLinearRing.R | 8 geometa-0.9/geometa/R/GMLMultiCurve.R | 8 geometa-0.9/geometa/R/GMLMultiPoint.R | 8 geometa-0.9/geometa/R/GMLMultiSurface.R | 8 geometa-0.9/geometa/R/GMLObliqueCartesianCS.R | 6 geometa-0.9/geometa/R/GMLOperationMethod.R | 6 geometa-0.9/geometa/R/GMLOperationParameter.R | 6 geometa-0.9/geometa/R/GMLOperationParameterGroup.R | 6 geometa-0.9/geometa/R/GMLParameterValue.R | 8 geometa-0.9/geometa/R/GMLParameterValueGroup.R | 8 geometa-0.9/geometa/R/GMLPoint.R | 8 geometa-0.9/geometa/R/GMLPolarCS.R | 6 geometa-0.9/geometa/R/GMLPolygon.R | 8 geometa-0.9/geometa/R/GMLProjectedCRS.R | 6 geometa-0.9/geometa/R/GMLRectifiedGrid.R | 8 geometa-0.9/geometa/R/GMLReferenceableGridByArray.R | 8 geometa-0.9/geometa/R/GMLReferenceableGridByTransformation.R | 8 geometa-0.9/geometa/R/GMLReferenceableGridByVectors.R | 8 geometa-0.9/geometa/R/GMLShericalCS.R | 6 geometa-0.9/geometa/R/GMLTemporalCRS.R | 6 geometa-0.9/geometa/R/GMLTemporalCS.R | 6 geometa-0.9/geometa/R/GMLTimeCS.R | 6 geometa-0.9/geometa/R/GMLTimeInstant.R | 6 geometa-0.9/geometa/R/GMLTimePeriod.R | 6 geometa-0.9/geometa/R/GMLUnitDefinition.R | 8 geometa-0.9/geometa/R/GMLUserDefinedCS.R | 6 geometa-0.9/geometa/R/GMLVerticalCRS.R | 6 geometa-0.9/geometa/R/GMLVerticalCS.R | 6 geometa-0.9/geometa/R/INSPIREMetadataValidator.R | 14 geometa-0.9/geometa/R/ISOAbstractAcquisitionInformation.R |only geometa-0.9/geometa/R/ISOAbstractAggregate.R | 8 geometa-0.9/geometa/R/ISOAbstractApplicationSchemaInformation.R |only geometa-0.9/geometa/R/ISOAbstractCarrierOfCharacteristics.R | 8 geometa-0.9/geometa/R/ISOAbstractCatalogue.R | 21 geometa-0.9/geometa/R/ISOAbstractCitation.R |only geometa-0.9/geometa/R/ISOAbstractConstraints.R |only geometa-0.9/geometa/R/ISOAbstractContentInformation.R |only geometa-0.9/geometa/R/ISOAbstractDataEvaluation.R |only geometa-0.9/geometa/R/ISOAbstractDataQuality.R |only geometa-0.9/geometa/R/ISOAbstractDistribution.R |only geometa-0.9/geometa/R/ISOAbstractExtent.R |only geometa-0.9/geometa/R/ISOAbstractFeatureCatalogue.R |only geometa-0.9/geometa/R/ISOAbstractFeatureType.R |only geometa-0.9/geometa/R/ISOAbstractFormat.R |only geometa-0.9/geometa/R/ISOAbstractGenericName.R | 8 geometa-0.9/geometa/R/ISOAbstractLineageInformation.R |only geometa-0.9/geometa/R/ISOAbstractMaintenanceInformation.R |only geometa-0.9/geometa/R/ISOAbstractMetadata.R |only geometa-0.9/geometa/R/ISOAbstractMetadataExtension.R |only geometa-0.9/geometa/R/ISOAbstractMetaquality.R |only geometa-0.9/geometa/R/ISOAbstractObject.R | 219 - geometa-0.9/geometa/R/ISOAbstractOnlineResource.R |only geometa-0.9/geometa/R/ISOAbstractParameter.R |only geometa-0.9/geometa/R/ISOAbstractParty.R |only geometa-0.9/geometa/R/ISOAbstractPlatform.R |only geometa-0.9/geometa/R/ISOAbstractPortrayalCatalogueInformation.R |only geometa-0.9/geometa/R/ISOAbstractPropertyType.R | 53 geometa-0.9/geometa/R/ISOAbstractQualityElement.R |only geometa-0.9/geometa/R/ISOAbstractRSReferenceSystem.R |only geometa-0.9/geometa/R/ISOAbstractReferenceSystem.R | 76 geometa-0.9/geometa/R/ISOAbstractResourceDescription.R |only geometa-0.9/geometa/R/ISOAbstractResponsibility.R |only geometa-0.9/geometa/R/ISOAbstractResult.R | 23 geometa-0.9/geometa/R/ISOAbstractSpatialRepresentation.R |only geometa-0.9/geometa/R/ISOAbstractSpatialResolution.R |only geometa-0.9/geometa/R/ISOAbstractStandardOrderProcess.R |only geometa-0.9/geometa/R/ISOAbstractTemporalQuality.R |only geometa-0.9/geometa/R/ISOAbstractTypedDate.R |only geometa-0.9/geometa/R/ISOAddress.R | 74 geometa-0.9/geometa/R/ISOAggregateInformation.R | 6 geometa-0.9/geometa/R/ISOAnchor.R | 17 geometa-0.9/geometa/R/ISOAngle.R | 17 geometa-0.9/geometa/R/ISOApplicationSchemaInformation.R | 21 geometa-0.9/geometa/R/ISOAssociatedResource.R |only geometa-0.9/geometa/R/ISOAssociation.R | 8 geometa-0.9/geometa/R/ISOAssociationRole.R | 8 geometa-0.9/geometa/R/ISOAssociationType.R | 17 geometa-0.9/geometa/R/ISOAttributeGroup.R |only geometa-0.9/geometa/R/ISOAttributes.R | 6 geometa-0.9/geometa/R/ISOBand.R | 18 geometa-0.9/geometa/R/ISOBaseBoolean.R | 17 geometa-0.9/geometa/R/ISOBaseCharacterString.R | 17 geometa-0.9/geometa/R/ISOBaseDate.R | 17 geometa-0.9/geometa/R/ISOBaseDateTime.R | 17 geometa-0.9/geometa/R/ISOBaseDecimal.R | 17 geometa-0.9/geometa/R/ISOBaseInteger.R | 17 geometa-0.9/geometa/R/ISOBaseReal.R | 17 geometa-0.9/geometa/R/ISOBinary.R | 17 geometa-0.9/geometa/R/ISOBinding.R | 6 geometa-0.9/geometa/R/ISOBoundAssociationRole.R | 6 geometa-0.9/geometa/R/ISOBoundFeatureAttribute.R | 6 geometa-0.9/geometa/R/ISOBoundingPolygon.R | 17 geometa-0.9/geometa/R/ISOBrowseGraphic.R | 17 geometa-0.9/geometa/R/ISOCTCodelistValue.R |only geometa-0.9/geometa/R/ISOCarrierOfCharacteristics.R | 8 geometa-0.9/geometa/R/ISOCellGeometry.R | 24 geometa-0.9/geometa/R/ISOCharacterSet.R | 17 geometa-0.9/geometa/R/ISOCitation.R | 163 geometa-0.9/geometa/R/ISOCitationSeries.R | 13 geometa-0.9/geometa/R/ISOClassification.R | 17 geometa-0.9/geometa/R/ISOCodeDefinition.R |only geometa-0.9/geometa/R/ISOCodeListDictionary.R |only geometa-0.9/geometa/R/ISOCodeListValue.R | 88 geometa-0.9/geometa/R/ISOCodelist.R | 479 +- geometa-0.9/geometa/R/ISOCodelistCatalogue.R |only geometa-0.9/geometa/R/ISOConformanceResult.R | 42 geometa-0.9/geometa/R/ISOConstraint.R | 8 geometa-0.9/geometa/R/ISOConstraints.R | 115 geometa-0.9/geometa/R/ISOContact.R | 155 geometa-0.9/geometa/R/ISOContentInformation.R | 23 geometa-0.9/geometa/R/ISOCountry.R | 22 geometa-0.9/geometa/R/ISOCoupledResource.R | 10 geometa-0.9/geometa/R/ISOCouplingType.R | 12 geometa-0.9/geometa/R/ISOCoverageContentType.R | 21 geometa-0.9/geometa/R/ISOCoverageDescription.R | 19 geometa-0.9/geometa/R/ISODCPList.R | 12 geometa-0.9/geometa/R/ISODataFile.R | 8 geometa-0.9/geometa/R/ISODataIdentification.R | 325 - geometa-0.9/geometa/R/ISODataIdentification19115_3.R |only geometa-0.9/geometa/R/ISODataIdentification19139.R |only geometa-0.9/geometa/R/ISODataQuality.R | 50 geometa-0.9/geometa/R/ISODataQualityAbstractElement.R | 112 geometa-0.9/geometa/R/ISODataQualityCompleteness.R | 39 geometa-0.9/geometa/R/ISODataQualityLogicalConsistency.R | 67 geometa-0.9/geometa/R/ISODataQualityPositionalAccuracy.R | 52 geometa-0.9/geometa/R/ISODataQualityScope.R |only geometa-0.9/geometa/R/ISODataQualityTemporalAccuracy.R | 54 geometa-0.9/geometa/R/ISODataQualityThematicAccuracy.R | 79 geometa-0.9/geometa/R/ISODataSet.R | 8 geometa-0.9/geometa/R/ISODatatype.R | 8 geometa-0.9/geometa/R/ISODate.R | 26 geometa-0.9/geometa/R/ISODateType.R | 17 geometa-0.9/geometa/R/ISODefinitionReference.R | 6 geometa-0.9/geometa/R/ISODefinitionSource.R | 8 geometa-0.9/geometa/R/ISODescriptiveResult.R |only geometa-0.9/geometa/R/ISODigitalTransferOptions.R | 41 geometa-0.9/geometa/R/ISODimension.R | 17 geometa-0.9/geometa/R/ISODimensionNameType.R | 17 geometa-0.9/geometa/R/ISODistance.R | 26 geometa-0.9/geometa/R/ISODistribution.R | 17 geometa-0.9/geometa/R/ISODistributionUnits.R | 8 geometa-0.9/geometa/R/ISODistributor.R | 67 geometa-0.9/geometa/R/ISOElementSequence.R | 8 geometa-0.9/geometa/R/ISOEvaluationMethod.R |only geometa-0.9/geometa/R/ISOEvaluationMethodType.R | 17 geometa-0.9/geometa/R/ISOExtendedElementInformation.R | 8 geometa-0.9/geometa/R/ISOExtent.R | 17 geometa-0.9/geometa/R/ISOFeatureAssociation.R | 124 geometa-0.9/geometa/R/ISOFeatureAttribute.R | 22 geometa-0.9/geometa/R/ISOFeatureCatalogue.R | 25 geometa-0.9/geometa/R/ISOFeatureCatalogueDescription.R | 45 geometa-0.9/geometa/R/ISOFeatureOperation.R | 8 geometa-0.9/geometa/R/ISOFeatureType.R | 198 - geometa-0.9/geometa/R/ISOFeatureType19115_3.R |only geometa-0.9/geometa/R/ISOFeatureType19139.R |only geometa-0.9/geometa/R/ISOFeatureTypeInfo.R |only geometa-0.9/geometa/R/ISOFileName.R | 17 geometa-0.9/geometa/R/ISOFormat.R | 114 geometa-0.9/geometa/R/ISOFreeText.R | 17 geometa-0.9/geometa/R/ISOGeographicBoundingBox.R | 17 geometa-0.9/geometa/R/ISOGeographicDescription.R | 17 geometa-0.9/geometa/R/ISOGeographicExtent.R | 17 geometa-0.9/geometa/R/ISOGeometricObjectType.R | 17 geometa-0.9/geometa/R/ISOGeometricObjects.R | 17 geometa-0.9/geometa/R/ISOGeorectified.R | 17 geometa-0.9/geometa/R/ISOGeoreferenceable.R | 17 geometa-0.9/geometa/R/ISOGridSpatialRepresentation.R | 17 geometa-0.9/geometa/R/ISOIdentification.R | 326 - geometa-0.9/geometa/R/ISOIdentification19115_3.R |only geometa-0.9/geometa/R/ISOIdentification19139.R |only geometa-0.9/geometa/R/ISOImageDescription.R | 17 geometa-0.9/geometa/R/ISOImageryAcquisitionInformation.R | 29 geometa-0.9/geometa/R/ISOImageryAlgorithm.R | 17 geometa-0.9/geometa/R/ISOImageryBand.R | 19 geometa-0.9/geometa/R/ISOImageryBandDefinition.R | 17 geometa-0.9/geometa/R/ISOImageryContext.R | 17 geometa-0.9/geometa/R/ISOImageryCoverageDescription.R | 17 geometa-0.9/geometa/R/ISOImageryCoverageResult.R | 59 geometa-0.9/geometa/R/ISOImageryEnvironmentalRecord.R | 47 geometa-0.9/geometa/R/ISOImageryEvent.R | 17 geometa-0.9/geometa/R/ISOImageryGCP.R | 15 geometa-0.9/geometa/R/ISOImageryGCPCollection.R | 46 geometa-0.9/geometa/R/ISOImageryGeolocationInformation.R | 15 geometa-0.9/geometa/R/ISOImageryGeometryType.R | 17 geometa-0.9/geometa/R/ISOImageryGeorectified.R | 17 geometa-0.9/geometa/R/ISOImageryGeoreferenceable.R | 17 geometa-0.9/geometa/R/ISOImageryImageDescription.R | 17 geometa-0.9/geometa/R/ISOImageryInstrument.R | 83 geometa-0.9/geometa/R/ISOImageryMetadata.R | 17 geometa-0.9/geometa/R/ISOImageryNominalResolution.R | 17 geometa-0.9/geometa/R/ISOImageryObjective.R | 17 geometa-0.9/geometa/R/ISOImageryObjectiveType.R | 17 geometa-0.9/geometa/R/ISOImageryOperation.R | 39 geometa-0.9/geometa/R/ISOImageryOperationType.R | 17 geometa-0.9/geometa/R/ISOImageryPlan.R | 17 geometa-0.9/geometa/R/ISOImageryPlatform.R | 61 geometa-0.9/geometa/R/ISOImageryPlatformPass.R | 17 geometa-0.9/geometa/R/ISOImageryPolarisationOrientation.R | 17 geometa-0.9/geometa/R/ISOImageryPriority.R | 17 geometa-0.9/geometa/R/ISOImageryProcessStep.R | 17 geometa-0.9/geometa/R/ISOImageryProcessStepReport.R | 17 geometa-0.9/geometa/R/ISOImageryProcessing.R | 17 geometa-0.9/geometa/R/ISOImageryRangeElementDescription.R | 17 geometa-0.9/geometa/R/ISOImageryRequestedDate.R | 17 geometa-0.9/geometa/R/ISOImageryRequirement.R | 17 geometa-0.9/geometa/R/ISOImageryRevision.R |only geometa-0.9/geometa/R/ISOImagerySensor.R |only geometa-0.9/geometa/R/ISOImagerySensorType.R | 38 geometa-0.9/geometa/R/ISOImagerySequence.R | 17 geometa-0.9/geometa/R/ISOImagerySource.R | 17 geometa-0.9/geometa/R/ISOImageryTransferFunctionType.R | 17 geometa-0.9/geometa/R/ISOImageryTrigger.R | 17 geometa-0.9/geometa/R/ISOImageryUsability.R | 8 geometa-0.9/geometa/R/ISOImagingCondition.R | 17 geometa-0.9/geometa/R/ISOIndividual.R |only geometa-0.9/geometa/R/ISOInheritanceRelation.R | 6 geometa-0.9/geometa/R/ISOInitiative.R | 8 geometa-0.9/geometa/R/ISOInitiativeType.R | 17 geometa-0.9/geometa/R/ISOInstrumentationEvent.R |only geometa-0.9/geometa/R/ISOInstrumentationEventList.R |only geometa-0.9/geometa/R/ISOInstrumentationEventType.R |only geometa-0.9/geometa/R/ISOKeywordClass.R |only geometa-0.9/geometa/R/ISOKeywordType.R | 17 geometa-0.9/geometa/R/ISOKeywords.R | 15 geometa-0.9/geometa/R/ISOLanguage.R | 17 geometa-0.9/geometa/R/ISOLegalConstraints.R | 17 geometa-0.9/geometa/R/ISOLength.R | 17 geometa-0.9/geometa/R/ISOLineage.R | 17 geometa-0.9/geometa/R/ISOListedValue.R | 8 geometa-0.9/geometa/R/ISOLocalName.R | 14 geometa-0.9/geometa/R/ISOLocale.R | 36 geometa-0.9/geometa/R/ISOLocaleContainer.R | 98 geometa-0.9/geometa/R/ISOLocalisedCharacterString.R | 17 geometa-0.9/geometa/R/ISOMDFeatureCatalogue.R |only geometa-0.9/geometa/R/ISOMLCodeDefinition.R |only geometa-0.9/geometa/R/ISOMLCodeListDictionary.R |only geometa-0.9/geometa/R/ISOMaintenanceFrequency.R | 17 geometa-0.9/geometa/R/ISOMaintenanceInformation.R | 17 geometa-0.9/geometa/R/ISOMeasure.R | 19 geometa-0.9/geometa/R/ISOMeasureReference.R |only geometa-0.9/geometa/R/ISOMedium.R | 15 geometa-0.9/geometa/R/ISOMediumFormat.R | 17 geometa-0.9/geometa/R/ISOMediumName.R | 8 geometa-0.9/geometa/R/ISOMemberName.R | 17 geometa-0.9/geometa/R/ISOMetaIdentifier.R | 75 geometa-0.9/geometa/R/ISOMetadata.R | 451 ++ geometa-0.9/geometa/R/ISOMetadataExtensionInformation.R | 8 geometa-0.9/geometa/R/ISOMetadataNamespace.R | 320 + geometa-0.9/geometa/R/ISOMetadataSchemas.R | 136 geometa-0.9/geometa/R/ISOMetadataScope.R |only geometa-0.9/geometa/R/ISOMimeFileType.R | 17 geometa-0.9/geometa/R/ISOMultiplicity.R | 17 geometa-0.9/geometa/R/ISOMultiplicityRange.R | 17 geometa-0.9/geometa/R/ISOObligation.R | 8 geometa-0.9/geometa/R/ISOOnLineFunction.R | 17 geometa-0.9/geometa/R/ISOOnlineResource.R | 23 geometa-0.9/geometa/R/ISOOperationChainMetadata.R |only geometa-0.9/geometa/R/ISOOperationMetadata.R | 24 geometa-0.9/geometa/R/ISOOrganisation.R |only geometa-0.9/geometa/R/ISOOtherAggregate.R | 8 geometa-0.9/geometa/R/ISOParameterDirection.R | 43 geometa-0.9/geometa/R/ISOPeriodDuration.R |only geometa-0.9/geometa/R/ISOPixelOrientation.R | 20 geometa-0.9/geometa/R/ISOPlatform.R | 8 geometa-0.9/geometa/R/ISOPortrayalCatalogueReference.R | 17 geometa-0.9/geometa/R/ISOPresentationForm.R | 17 geometa-0.9/geometa/R/ISOProcessParameter.R |only geometa-0.9/geometa/R/ISOProcessStep.R | 17 geometa-0.9/geometa/R/ISOProductionSeries.R | 8 geometa-0.9/geometa/R/ISOProgress.R |only geometa-0.9/geometa/R/ISOPropertyType.R | 6 geometa-0.9/geometa/R/ISOQualityResultFile.R |only geometa-0.9/geometa/R/ISOQuantitativeResult.R | 44 geometa-0.9/geometa/R/ISORangeDimension.R | 46 geometa-0.9/geometa/R/ISORecord.R | 8 geometa-0.9/geometa/R/ISORecordType.R | 17 geometa-0.9/geometa/R/ISOReferenceIdentifier.R | 39 geometa-0.9/geometa/R/ISOReferenceSystem.R | 56 geometa-0.9/geometa/R/ISOReferenceSystemType.R |only geometa-0.9/geometa/R/ISOReleasability.R |only geometa-0.9/geometa/R/ISORepresentativeFraction.R | 17 geometa-0.9/geometa/R/ISOResolution.R | 17 geometa-0.9/geometa/R/ISOResponsibility.R |only geometa-0.9/geometa/R/ISOResponsibleParty.R | 6 geometa-0.9/geometa/R/ISORestriction.R | 17 geometa-0.9/geometa/R/ISORole.R | 17 geometa-0.9/geometa/R/ISORoleType.R | 8 geometa-0.9/geometa/R/ISOSRVParameter.R |only geometa-0.9/geometa/R/ISOSRVParameterDirection.R |only geometa-0.9/geometa/R/ISOSampleDimension.R |only geometa-0.9/geometa/R/ISOScale.R | 17 geometa-0.9/geometa/R/ISOScope.R | 119 geometa-0.9/geometa/R/ISOScopeCode.R |only geometa-0.9/geometa/R/ISOScopeDescription.R | 17 geometa-0.9/geometa/R/ISOScopedName.R | 17 geometa-0.9/geometa/R/ISOSecurityConstraints.R | 17 geometa-0.9/geometa/R/ISOSensor.R | 8 geometa-0.9/geometa/R/ISOSeries.R | 51 geometa-0.9/geometa/R/ISOServiceIdentification.R | 491 ++ geometa-0.9/geometa/R/ISOSource.R | 17 geometa-0.9/geometa/R/ISOSpatialRepresentation.R | 21 geometa-0.9/geometa/R/ISOSpatialRepresentationType.R | 19 geometa-0.9/geometa/R/ISOSpatialTemporalExtent.R | 17 geometa-0.9/geometa/R/ISOStandaloneQualityReportInformation.R |only geometa-0.9/geometa/R/ISOStandardOrderProcess.R | 42 geometa-0.9/geometa/R/ISOStereoMate.R | 8 geometa-0.9/geometa/R/ISOTelephone.R | 49 geometa-0.9/geometa/R/ISOTelephoneType.R |only geometa-0.9/geometa/R/ISOTemporalExtent.R | 17 geometa-0.9/geometa/R/ISOTopicCategory.R | 17 geometa-0.9/geometa/R/ISOTopologyLevel.R | 17 geometa-0.9/geometa/R/ISOTypeName.R | 17 geometa-0.9/geometa/R/ISOURI.R |only geometa-0.9/geometa/R/ISOURL.R | 6 geometa-0.9/geometa/R/ISOUnlimitedInteger.R | 17 geometa-0.9/geometa/R/ISOUomIdentifier.R |only geometa-0.9/geometa/R/ISOUsabilityElement.R |only geometa-0.9/geometa/R/ISOUsage.R | 39 geometa-0.9/geometa/R/ISOVectorSpatialRepresentation.R | 17 geometa-0.9/geometa/R/ISOVerticalExtent.R | 17 geometa-0.9/geometa/R/SWEAbstractDataComponent.R | 8 geometa-0.9/geometa/R/SWEAbstractEncoding.R | 8 geometa-0.9/geometa/R/SWEAbstractObject.R | 8 geometa-0.9/geometa/R/SWEAbstractSWE.R | 8 geometa-0.9/geometa/R/SWEAbstractSWEIdentifiable.R | 8 geometa-0.9/geometa/R/SWEAbstractSimpleComponent.R | 8 geometa-0.9/geometa/R/SWECategory.R | 8 geometa-0.9/geometa/R/SWECategoryRange.R | 8 geometa-0.9/geometa/R/SWECount.R | 8 geometa-0.9/geometa/R/SWECountRange.R | 8 geometa-0.9/geometa/R/SWEDataRecord.R | 8 geometa-0.9/geometa/R/SWEElement.R | 10 geometa-0.9/geometa/R/SWENilValues.R | 8 geometa-0.9/geometa/R/SWEQuantity.R | 8 geometa-0.9/geometa/R/SWEQuantityRange.R | 8 geometa-0.9/geometa/R/SWEText.R | 8 geometa-0.9/geometa/R/SWETextEncoding.R | 8 geometa-0.9/geometa/R/SWETime.R | 8 geometa-0.9/geometa/R/SWETimeRange.R | 8 geometa-0.9/geometa/R/SWEXMLEncoding.R | 8 geometa-0.9/geometa/R/geometa_coverage.R | 41 geometa-0.9/geometa/R/geometa_logger.R | 4 geometa-0.9/geometa/R/geometa_mapping.R | 8 geometa-0.9/geometa/R/profile.R | 12 geometa-0.9/geometa/R/readISO.R |only geometa-0.9/geometa/README.md | 61 geometa-0.9/geometa/inst/extdata/codelists/gmxCodelists.xml | 13 geometa-0.9/geometa/inst/extdata/coverage/coverage.R | 33 geometa-0.9/geometa/inst/extdata/coverage/geometa_coverage_inventory.csv | 1286 ++++-- geometa-0.9/geometa/inst/extdata/coverage/geometa_coverage_summary.csv | 46 geometa-0.9/geometa/inst/extdata/coverage/geometa_coverage_summary.html |only geometa-0.9/geometa/inst/extdata/coverage/geometa_coverage_summary.md | 48 geometa-0.9/geometa/inst/extdata/examples/metadata.R | 2 geometa-0.9/geometa/inst/extdata/examples/metadata_19115-3.xml |only geometa-0.9/geometa/inst/extdata/examples/metadata_i18n.R | 2 geometa-0.9/geometa/inst/extdata/mappings/geometa_mapping.csv | 14 geometa-0.9/geometa/inst/extdata/schemas/19110 |only geometa-0.9/geometa/inst/extdata/schemas/19115 |only geometa-0.9/geometa/inst/extdata/schemas/19119 |only geometa-0.9/geometa/inst/extdata/schemas/19135 |only geometa-0.9/geometa/inst/extdata/schemas/19139 |only geometa-0.9/geometa/inst/extdata/schemas/19155 |only geometa-0.9/geometa/inst/extdata/schemas/19157 |only geometa-0.9/geometa/inst/extdata/schemas/19165 |only geometa-0.9/geometa/man/GMLAbstractCRS.Rd | 8 geometa-0.9/geometa/man/GMLAbstractCoordinateOperation.Rd | 8 geometa-0.9/geometa/man/GMLAbstractCoordinateSystem.Rd | 8 geometa-0.9/geometa/man/GMLAbstractCoverage.Rd | 8 geometa-0.9/geometa/man/GMLAbstractCurve.Rd | 6 geometa-0.9/geometa/man/GMLAbstractDiscreteCoverage.Rd | 8 geometa-0.9/geometa/man/GMLAbstractFeature.Rd | 8 geometa-0.9/geometa/man/GMLAbstractGML.Rd | 8 geometa-0.9/geometa/man/GMLAbstractGeneralConversion.Rd | 6 geometa-0.9/geometa/man/GMLAbstractGeneralDerivedCRS.Rd | 6 geometa-0.9/geometa/man/GMLAbstractGeneralOperationParameter.Rd | 6 geometa-0.9/geometa/man/GMLAbstractGeneralParameterValue.Rd | 8 geometa-0.9/geometa/man/GMLAbstractGeometricAggregate.Rd | 6 geometa-0.9/geometa/man/GMLAbstractGeometricPrimitive.Rd | 6 geometa-0.9/geometa/man/GMLAbstractGeometry.Rd | 8 geometa-0.9/geometa/man/GMLAbstractImplicitGeometry.Rd | 8 geometa-0.9/geometa/man/GMLAbstractObject.Rd | 8 geometa-0.9/geometa/man/GMLAbstractReferenceableGrid.Rd | 8 geometa-0.9/geometa/man/GMLAbstractRing.Rd | 6 geometa-0.9/geometa/man/GMLAbstractSingleCRS.Rd | 6 geometa-0.9/geometa/man/GMLAbstractSingleOperation.Rd | 6 geometa-0.9/geometa/man/GMLAbstractSurface.Rd | 6 geometa-0.9/geometa/man/GMLAbstractTimeGeometricPrimitive.Rd | 8 geometa-0.9/geometa/man/GMLAbstractTimeObject.Rd | 8 geometa-0.9/geometa/man/GMLAbstractTimePrimitive.Rd | 8 geometa-0.9/geometa/man/GMLAffineCS.Rd | 6 geometa-0.9/geometa/man/GMLBaseUnit.Rd | 8 geometa-0.9/geometa/man/GMLCOVAbstractCoverage.Rd | 8 geometa-0.9/geometa/man/GMLCOVExtension.Rd | 8 geometa-0.9/geometa/man/GMLCartesianCS.Rd | 6 geometa-0.9/geometa/man/GMLCodeType.Rd | 8 geometa-0.9/geometa/man/GMLCompoundCRS.Rd | 8 geometa-0.9/geometa/man/GMLConventionalUnit.Rd | 8 geometa-0.9/geometa/man/GMLConversion.Rd | 6 geometa-0.9/geometa/man/GMLCoordinateSystemAxis.Rd | 8 geometa-0.9/geometa/man/GMLCylindricalCS.Rd | 6 geometa-0.9/geometa/man/GMLDefinition.Rd | 8 geometa-0.9/geometa/man/GMLDerivedCRS.Rd | 6 geometa-0.9/geometa/man/GMLDerivedUnit.Rd | 8 geometa-0.9/geometa/man/GMLElement.Rd | 10 geometa-0.9/geometa/man/GMLEllipsoidalCS.Rd | 6 geometa-0.9/geometa/man/GMLEnvelope.Rd | 10 geometa-0.9/geometa/man/GMLEnvelopeWithTimePeriod.Rd | 10 geometa-0.9/geometa/man/GMLGeneralGridAxis.Rd | 10 geometa-0.9/geometa/man/GMLGeodeticCRS.Rd | 6 geometa-0.9/geometa/man/GMLGrid.Rd | 8 geometa-0.9/geometa/man/GMLGridCoverage.Rd | 8 geometa-0.9/geometa/man/GMLGridEnvelope.Rd | 6 geometa-0.9/geometa/man/GMLGridFunction.Rd | 8 geometa-0.9/geometa/man/GMLLineString.Rd | 8 geometa-0.9/geometa/man/GMLLinearCS.Rd | 6 geometa-0.9/geometa/man/GMLLinearRing.Rd | 8 geometa-0.9/geometa/man/GMLMultiCurve.Rd | 8 geometa-0.9/geometa/man/GMLMultiCurveCoverage.Rd | 8 geometa-0.9/geometa/man/GMLMultiPoint.Rd | 8 geometa-0.9/geometa/man/GMLMultiPointCoverage.Rd | 8 geometa-0.9/geometa/man/GMLMultiSolidCoverage.Rd | 8 geometa-0.9/geometa/man/GMLMultiSurface.Rd | 8 geometa-0.9/geometa/man/GMLMultiSurfaceCoverage.Rd | 8 geometa-0.9/geometa/man/GMLObliqueCartesianCS.Rd | 6 geometa-0.9/geometa/man/GMLOperationMethod.Rd | 6 geometa-0.9/geometa/man/GMLOperationParameter.Rd | 6 geometa-0.9/geometa/man/GMLOperationParameterGroup.Rd | 6 geometa-0.9/geometa/man/GMLParameterValue.Rd | 8 geometa-0.9/geometa/man/GMLParameterValueGroup.Rd | 8 geometa-0.9/geometa/man/GMLPoint.Rd | 8 geometa-0.9/geometa/man/GMLPolarCS.Rd | 6 geometa-0.9/geometa/man/GMLPolygon.Rd | 8 geometa-0.9/geometa/man/GMLProjectedCRS.Rd | 6 geometa-0.9/geometa/man/GMLRectifiedGrid.Rd | 8 geometa-0.9/geometa/man/GMLRectifiedGridCoverage.Rd | 8 geometa-0.9/geometa/man/GMLReferenceableGridByArray.Rd | 8 geometa-0.9/geometa/man/GMLReferenceableGridByTransformation.Rd | 8 geometa-0.9/geometa/man/GMLReferenceableGridByVectors.Rd | 8 geometa-0.9/geometa/man/GMLSphericalCS.Rd | 6 geometa-0.9/geometa/man/GMLTemporalCRS.Rd | 6 geometa-0.9/geometa/man/GMLTemporalCS.Rd | 6 geometa-0.9/geometa/man/GMLTimeCS.Rd | 6 geometa-0.9/geometa/man/GMLTimeInstant.Rd | 8 geometa-0.9/geometa/man/GMLTimePeriod.Rd | 8 geometa-0.9/geometa/man/GMLUnitDefinition.Rd | 8 geometa-0.9/geometa/man/GMLUserDefinedCS.Rd | 6 geometa-0.9/geometa/man/GMLVerticalCRS.Rd | 6 geometa-0.9/geometa/man/GMLVerticalCS.Rd | 6 geometa-0.9/geometa/man/INSPIREMetadataValidator.Rd | 10 geometa-0.9/geometa/man/ISOAbsoluteExternalPositionalAccuracy.Rd | 17 geometa-0.9/geometa/man/ISOAbstractAcquisitionInformation.Rd |only geometa-0.9/geometa/man/ISOAbstractAggregate.Rd | 8 geometa-0.9/geometa/man/ISOAbstractApplicationSchemaInformation.Rd |only geometa-0.9/geometa/man/ISOAbstractCarrierOfCharacteristics.Rd | 8 geometa-0.9/geometa/man/ISOAbstractCatalogue.Rd | 14 geometa-0.9/geometa/man/ISOAbstractCitation.Rd |only geometa-0.9/geometa/man/ISOAbstractCompleteness.Rd | 17 geometa-0.9/geometa/man/ISOAbstractConstraints.Rd |only geometa-0.9/geometa/man/ISOAbstractContentInformation.Rd |only geometa-0.9/geometa/man/ISOAbstractDataEvaluation.Rd |only geometa-0.9/geometa/man/ISOAbstractDataQuality.Rd |only geometa-0.9/geometa/man/ISOAbstractDistribution.Rd |only geometa-0.9/geometa/man/ISOAbstractExtent.Rd |only geometa-0.9/geometa/man/ISOAbstractFeatureCatalogue.Rd |only geometa-0.9/geometa/man/ISOAbstractFeatureType.Rd |only geometa-0.9/geometa/man/ISOAbstractFormat.Rd |only geometa-0.9/geometa/man/ISOAbstractGenericName.Rd | 8 geometa-0.9/geometa/man/ISOAbstractLineageInformation.Rd |only geometa-0.9/geometa/man/ISOAbstractLogicalConsistency.Rd | 17 geometa-0.9/geometa/man/ISOAbstractMDContentInformation.Rd |only geometa-0.9/geometa/man/ISOAbstractMaintenanceInformation.Rd |only geometa-0.9/geometa/man/ISOAbstractMetadata.Rd |only geometa-0.9/geometa/man/ISOAbstractMetadataExtension.Rd |only geometa-0.9/geometa/man/ISOAbstractMetaquality.Rd |only geometa-0.9/geometa/man/ISOAbstractObject.Rd | 48 geometa-0.9/geometa/man/ISOAbstractOnlineResource.Rd |only geometa-0.9/geometa/man/ISOAbstractParameter.Rd |only geometa-0.9/geometa/man/ISOAbstractParty.Rd |only geometa-0.9/geometa/man/ISOAbstractPlatform.Rd |only geometa-0.9/geometa/man/ISOAbstractPortrayalCatalogueInformation.Rd |only geometa-0.9/geometa/man/ISOAbstractPositionalAccuracy.Rd | 17 geometa-0.9/geometa/man/ISOAbstractPropertyType.Rd | 33 geometa-0.9/geometa/man/ISOAbstractQualityElement.Rd |only geometa-0.9/geometa/man/ISOAbstractRSReferenceSystem.Rd |only geometa-0.9/geometa/man/ISOAbstractReferenceSystem.Rd | 85 geometa-0.9/geometa/man/ISOAbstractResourceDescription.Rd |only geometa-0.9/geometa/man/ISOAbstractResponsibility.Rd |only geometa-0.9/geometa/man/ISOAbstractResult.Rd | 23 geometa-0.9/geometa/man/ISOAbstractSpatialRepresentation.Rd |only geometa-0.9/geometa/man/ISOAbstractSpatialResolution.Rd |only geometa-0.9/geometa/man/ISOAbstractStandardOrderProcess.Rd |only geometa-0.9/geometa/man/ISOAbstractTemporalAccuracy.Rd | 17 geometa-0.9/geometa/man/ISOAbstractTemporalQuality.Rd |only geometa-0.9/geometa/man/ISOAbstractThematicAccuracy.Rd | 17 geometa-0.9/geometa/man/ISOAbstractTypedDate.Rd |only geometa-0.9/geometa/man/ISOAccuracyOfATimeMeasurement.Rd | 17 geometa-0.9/geometa/man/ISOAddress.Rd | 104 geometa-0.9/geometa/man/ISOAggregateInformation.Rd | 8 geometa-0.9/geometa/man/ISOAggregationDerivation.Rd |only geometa-0.9/geometa/man/ISOAnchor.Rd | 12 geometa-0.9/geometa/man/ISOAngle.Rd | 12 geometa-0.9/geometa/man/ISOApplicationSchemaInformation.Rd | 16 geometa-0.9/geometa/man/ISOAssociatedResource.Rd |only geometa-0.9/geometa/man/ISOAssociation.Rd | 8 geometa-0.9/geometa/man/ISOAssociationRole.Rd | 9 geometa-0.9/geometa/man/ISOAssociationType.Rd | 12 geometa-0.9/geometa/man/ISOAttributeGroup.Rd |only geometa-0.9/geometa/man/ISOAttributes.Rd | 4 geometa-0.9/geometa/man/ISOBand.Rd | 15 geometa-0.9/geometa/man/ISOBaseBoolean.Rd | 12 geometa-0.9/geometa/man/ISOBaseCharacterString.Rd | 12 geometa-0.9/geometa/man/ISOBaseDate.Rd | 12 geometa-0.9/geometa/man/ISOBaseDateTime.Rd | 12 geometa-0.9/geometa/man/ISOBaseDecimal.Rd | 12 geometa-0.9/geometa/man/ISOBaseInteger.Rd | 12 geometa-0.9/geometa/man/ISOBaseReal.Rd | 12 geometa-0.9/geometa/man/ISOBinary.Rd | 12 geometa-0.9/geometa/man/ISOBinding.Rd | 6 geometa-0.9/geometa/man/ISOBoundAssociationRole.Rd | 6 geometa-0.9/geometa/man/ISOBoundFeatureAttribute.Rd | 6 geometa-0.9/geometa/man/ISOBoundingPolygon.Rd | 12 geometa-0.9/geometa/man/ISOBrowseGraphic.Rd | 12 geometa-0.9/geometa/man/ISOCTCodelistValue.Rd |only geometa-0.9/geometa/man/ISOCarrierOfCharacteristics.Rd | 8 geometa-0.9/geometa/man/ISOCellGeometry.Rd | 21 geometa-0.9/geometa/man/ISOCharacterSet.Rd | 12 geometa-0.9/geometa/man/ISOCitation.Rd | 185 geometa-0.9/geometa/man/ISOCitationSeries.Rd | 8 geometa-0.9/geometa/man/ISOClassification.Rd | 12 geometa-0.9/geometa/man/ISOCodeDefinition.Rd |only geometa-0.9/geometa/man/ISOCodeListDictionary.Rd |only geometa-0.9/geometa/man/ISOCodeListValue.Rd | 329 - geometa-0.9/geometa/man/ISOCodelist.Rd | 69 geometa-0.9/geometa/man/ISOCodelistCatalogue.Rd |only geometa-0.9/geometa/man/ISOCompletenessCommission.Rd | 17 geometa-0.9/geometa/man/ISOCompletenessOmission.Rd | 17 geometa-0.9/geometa/man/ISOConceptualConsistency.Rd | 17 geometa-0.9/geometa/man/ISOConfidence.Rd |only geometa-0.9/geometa/man/ISOConformanceResult.Rd | 52 geometa-0.9/geometa/man/ISOConstraint.Rd | 8 geometa-0.9/geometa/man/ISOConstraints.Rd | 184 geometa-0.9/geometa/man/ISOContact.Rd | 232 + geometa-0.9/geometa/man/ISOCountry.Rd | 12 geometa-0.9/geometa/man/ISOCoupledResource.Rd | 12 geometa-0.9/geometa/man/ISOCouplingType.Rd | 12 geometa-0.9/geometa/man/ISOCoverageContentType.Rd | 14 geometa-0.9/geometa/man/ISOCoverageDescription.Rd | 14 geometa-0.9/geometa/man/ISODCPList.Rd | 12 geometa-0.9/geometa/man/ISODataFile.Rd | 8 geometa-0.9/geometa/man/ISODataIdentification.Rd | 544 -- geometa-0.9/geometa/man/ISODataIdentification19115_3.Rd |only geometa-0.9/geometa/man/ISODataIdentification19139.Rd |only geometa-0.9/geometa/man/ISODataInspection.Rd |only geometa-0.9/geometa/man/ISODataQuality.Rd | 34 geometa-0.9/geometa/man/ISODataQualityAbstractElement.Rd | 138 geometa-0.9/geometa/man/ISODataQualityScope.Rd |only geometa-0.9/geometa/man/ISODataSet.Rd | 8 geometa-0.9/geometa/man/ISODatatype.Rd | 8 geometa-0.9/geometa/man/ISODate.Rd | 21 geometa-0.9/geometa/man/ISODateType.Rd | 12 geometa-0.9/geometa/man/ISODefinitionReference.Rd | 8 geometa-0.9/geometa/man/ISODefinitionSource.Rd | 8 geometa-0.9/geometa/man/ISODescriptiveResult.Rd |only geometa-0.9/geometa/man/ISODigitalTransferOptions.Rd | 56 geometa-0.9/geometa/man/ISODimension.Rd | 12 geometa-0.9/geometa/man/ISODimensionNameType.Rd | 12 geometa-0.9/geometa/man/ISODistance.Rd | 23 geometa-0.9/geometa/man/ISODistribution.Rd | 12 geometa-0.9/geometa/man/ISODistributionUnits.Rd | 8 geometa-0.9/geometa/man/ISODistributor.Rd | 100 geometa-0.9/geometa/man/ISODomainConsistency.Rd | 17 geometa-0.9/geometa/man/ISOElementSequence.Rd | 8 geometa-0.9/geometa/man/ISOEvaluationMethod.Rd |only geometa-0.9/geometa/man/ISOEvaluationMethodType.Rd | 12 geometa-0.9/geometa/man/ISOExtendedElementInformation.Rd | 8 geometa-0.9/geometa/man/ISOExtent.Rd | 12 geometa-0.9/geometa/man/ISOFeatureAssociation.Rd | 24 geometa-0.9/geometa/man/ISOFeatureAssociation19115_3.Rd |only geometa-0.9/geometa/man/ISOFeatureAssociation19139.Rd |only geometa-0.9/geometa/man/ISOFeatureAttribute.Rd | 12 geometa-0.9/geometa/man/ISOFeatureCatalogue.Rd | 10 geometa-0.9/geometa/man/ISOFeatureCatalogueDescription.Rd | 60 geometa-0.9/geometa/man/ISOFeatureOperation.Rd | 9 geometa-0.9/geometa/man/ISOFeatureType.Rd | 361 - geometa-0.9/geometa/man/ISOFeatureType19115_3.Rd |only geometa-0.9/geometa/man/ISOFeatureType19139.Rd |only geometa-0.9/geometa/man/ISOFeatureTypeInfo.Rd |only geometa-0.9/geometa/man/ISOFileName.Rd | 12 geometa-0.9/geometa/man/ISOFormat.Rd | 84 geometa-0.9/geometa/man/ISOFormatConsistency.Rd | 17 geometa-0.9/geometa/man/ISOFreeText.Rd | 12 geometa-0.9/geometa/man/ISOFullInspection.Rd |only geometa-0.9/geometa/man/ISOGeographicBoundingBox.Rd | 12 geometa-0.9/geometa/man/ISOGeographicDescription.Rd | 12 geometa-0.9/geometa/man/ISOGeographicExtent.Rd | 12 geometa-0.9/geometa/man/ISOGeometricObjectType.Rd | 12 geometa-0.9/geometa/man/ISOGeometricObjects.Rd | 12 geometa-0.9/geometa/man/ISOGeorectified.Rd | 14 geometa-0.9/geometa/man/ISOGeoreferenceable.Rd | 14 geometa-0.9/geometa/man/ISOGridSpatialRepresentation.Rd | 14 geometa-0.9/geometa/man/ISOGriddedDataPositionalAccuracy.Rd | 17 geometa-0.9/geometa/man/ISOHomogeneity.Rd |only geometa-0.9/geometa/man/ISOIdentification.Rd | 569 -- geometa-0.9/geometa/man/ISOIdentification19115_3.Rd |only geometa-0.9/geometa/man/ISOIdentification19139.Rd |only geometa-0.9/geometa/man/ISOImageDescription.Rd | 14 geometa-0.9/geometa/man/ISOImageryAbstractGeolocationInformation.Rd | 12 geometa-0.9/geometa/man/ISOImageryAcquisitionInformation.Rd | 34 geometa-0.9/geometa/man/ISOImageryAlgorithm.Rd | 12 geometa-0.9/geometa/man/ISOImageryBand.Rd | 15 geometa-0.9/geometa/man/ISOImageryBandDefinition.Rd | 12 geometa-0.9/geometa/man/ISOImageryContext.Rd | 12 geometa-0.9/geometa/man/ISOImageryCoverageDescription.Rd | 14 geometa-0.9/geometa/man/ISOImageryCoverageResult.Rd | 55 geometa-0.9/geometa/man/ISOImageryEnvironmentalRecord.Rd | 52 geometa-0.9/geometa/man/ISOImageryEvent.Rd | 12 geometa-0.9/geometa/man/ISOImageryGCP.Rd | 12 geometa-0.9/geometa/man/ISOImageryGCPCollection.Rd | 41 geometa-0.9/geometa/man/ISOImageryGeometryType.Rd | 12 geometa-0.9/geometa/man/ISOImageryGeorectified.Rd | 14 geometa-0.9/geometa/man/ISOImageryGeoreferenceable.Rd | 14 geometa-0.9/geometa/man/ISOImageryImageDescription.Rd | 14 geometa-0.9/geometa/man/ISOImageryInstrument.Rd | 140 geometa-0.9/geometa/man/ISOImageryMetadata.Rd | 32 geometa-0.9/geometa/man/ISOImageryNominalResolution.Rd | 19 geometa-0.9/geometa/man/ISOImageryObjective.Rd | 12 geometa-0.9/geometa/man/ISOImageryObjectiveType.Rd | 12 geometa-0.9/geometa/man/ISOImageryOperation.Rd | 52 geometa-0.9/geometa/man/ISOImageryOperationType.Rd | 12 geometa-0.9/geometa/man/ISOImageryPlan.Rd | 12 geometa-0.9/geometa/man/ISOImageryPlatform.Rd | 96 geometa-0.9/geometa/man/ISOImageryPlatformPass.Rd | 12 geometa-0.9/geometa/man/ISOImageryPolarisationOrientation.Rd | 12 geometa-0.9/geometa/man/ISOImageryPriority.Rd | 12 geometa-0.9/geometa/man/ISOImageryProcessStep.Rd | 12 geometa-0.9/geometa/man/ISOImageryProcessStepReport.Rd | 12 geometa-0.9/geometa/man/ISOImageryProcessing.Rd | 12 geometa-0.9/geometa/man/ISOImageryRangeElementDescription.Rd | 12 geometa-0.9/geometa/man/ISOImageryRequestedDate.Rd | 12 geometa-0.9/geometa/man/ISOImageryRequirement.Rd | 12 geometa-0.9/geometa/man/ISOImageryRevision.Rd |only geometa-0.9/geometa/man/ISOImagerySensor.Rd |only geometa-0.9/geometa/man/ISOImagerySensorType.Rd | 23 geometa-0.9/geometa/man/ISOImagerySequence.Rd | 12 geometa-0.9/geometa/man/ISOImagerySource.Rd | 12 geometa-0.9/geometa/man/ISOImageryTransferFunctionType.Rd | 12 geometa-0.9/geometa/man/ISOImageryTrigger.Rd | 12 geometa-0.9/geometa/man/ISOImageryUsability.Rd | 15 geometa-0.9/geometa/man/ISOImagingCondition.Rd | 12 geometa-0.9/geometa/man/ISOIndirectEvaluation.Rd |only geometa-0.9/geometa/man/ISOIndividual.Rd |only geometa-0.9/geometa/man/ISOInheritanceRelation.Rd | 6 geometa-0.9/geometa/man/ISOInitiative.Rd | 8 geometa-0.9/geometa/man/ISOInitiativeType.Rd | 12 geometa-0.9/geometa/man/ISOInstrumentationEvent.Rd |only geometa-0.9/geometa/man/ISOInstrumentationEventList.Rd |only geometa-0.9/geometa/man/ISOInstrumentationEventType.Rd |only geometa-0.9/geometa/man/ISOKeywordClass.Rd |only geometa-0.9/geometa/man/ISOKeywordType.Rd | 12 geometa-0.9/geometa/man/ISOKeywords.Rd | 12 geometa-0.9/geometa/man/ISOLanguage.Rd | 12 geometa-0.9/geometa/man/ISOLegalConstraints.Rd | 20 geometa-0.9/geometa/man/ISOLength.Rd | 12 geometa-0.9/geometa/man/ISOLineage.Rd | 12 geometa-0.9/geometa/man/ISOListedValue.Rd | 8 geometa-0.9/geometa/man/ISOLocalName.Rd | 10 geometa-0.9/geometa/man/ISOLocale.Rd | 20 geometa-0.9/geometa/man/ISOLocaleContainer.Rd | 78 geometa-0.9/geometa/man/ISOLocalisedCharacterString.Rd | 12 geometa-0.9/geometa/man/ISOMDFeatureCatalogue.Rd |only geometa-0.9/geometa/man/ISOMLCodeDefinition.Rd |only geometa-0.9/geometa/man/ISOMLCodeListDictionary.Rd |only geometa-0.9/geometa/man/ISOMaintenanceFrequency.Rd | 12 geometa-0.9/geometa/man/ISOMaintenanceInformation.Rd | 12 geometa-0.9/geometa/man/ISOMeasure.Rd | 12 geometa-0.9/geometa/man/ISOMeasureReference.Rd |only geometa-0.9/geometa/man/ISOMedium.Rd | 12 geometa-0.9/geometa/man/ISOMediumFormat.Rd | 12 geometa-0.9/geometa/man/ISOMediumName.Rd | 8 geometa-0.9/geometa/man/ISOMemberName.Rd | 12 geometa-0.9/geometa/man/ISOMetaIdentifier.Rd | 125 geometa-0.9/geometa/man/ISOMetadata.Rd | 428 ++ geometa-0.9/geometa/man/ISOMetadataExtensionInformation.Rd | 8 geometa-0.9/geometa/man/ISOMetadataNamespace.Rd | 24 geometa-0.9/geometa/man/ISOMetadataScope.Rd |only geometa-0.9/geometa/man/ISOMimeFileType.Rd | 12 geometa-0.9/geometa/man/ISOMultiplicity.Rd | 12 geometa-0.9/geometa/man/ISOMultiplicityRange.Rd | 12 geometa-0.9/geometa/man/ISONonQuantitativeAttributeAccuracy.Rd | 17 geometa-0.9/geometa/man/ISONonQuantitativeAttributeCorrectness.Rd |only geometa-0.9/geometa/man/ISOObligation.Rd | 8 geometa-0.9/geometa/man/ISOOnLineFunction.Rd | 12 geometa-0.9/geometa/man/ISOOnlineResource.Rd | 18 geometa-0.9/geometa/man/ISOOperationChainMetadata.Rd |only geometa-0.9/geometa/man/ISOOperationMetadata.Rd | 18 geometa-0.9/geometa/man/ISOOrganisation.Rd |only geometa-0.9/geometa/man/ISOOtherAggregate.Rd | 8 geometa-0.9/geometa/man/ISOParameterDirection.Rd | 10 geometa-0.9/geometa/man/ISOPeriodDuration.Rd |only geometa-0.9/geometa/man/ISOPixelOrientation.Rd | 12 geometa-0.9/geometa/man/ISOPlatform.Rd | 11 geometa-0.9/geometa/man/ISOPortrayalCatalogueReference.Rd | 12 geometa-0.9/geometa/man/ISOPresentationForm.Rd | 12 geometa-0.9/geometa/man/ISOProcessParameter.Rd |only geometa-0.9/geometa/man/ISOProcessStep.Rd | 12 geometa-0.9/geometa/man/ISOProductionSeries.Rd | 11 geometa-0.9/geometa/man/ISOProgress.Rd |only geometa-0.9/geometa/man/ISOPropertyType.Rd | 9 geometa-0.9/geometa/man/ISOQualityResultFile.Rd |only geometa-0.9/geometa/man/ISOQuantitativeAttributeAccuracy.Rd | 17 geometa-0.9/geometa/man/ISOQuantitativeResult.Rd | 54 geometa-0.9/geometa/man/ISORangeDimension.Rd | 58 geometa-0.9/geometa/man/ISORecord.Rd | 8 geometa-0.9/geometa/man/ISORecordType.Rd | 12 geometa-0.9/geometa/man/ISOReferenceIdentifier.Rd | 53 geometa-0.9/geometa/man/ISOReferenceSystem.Rd | 44 geometa-0.9/geometa/man/ISOReferenceSystemType.Rd |only geometa-0.9/geometa/man/ISORelativeInternalPositionalAccuracy.Rd | 17 geometa-0.9/geometa/man/ISOReleasability.Rd |only geometa-0.9/geometa/man/ISORepresentativeFraction.Rd | 12 geometa-0.9/geometa/man/ISORepresentativity.Rd |only geometa-0.9/geometa/man/ISOResolution.Rd | 12 geometa-0.9/geometa/man/ISOResponsibility.Rd |only geometa-0.9/geometa/man/ISOResponsibleParty.Rd | 8 geometa-0.9/geometa/man/ISORestriction.Rd | 12 geometa-0.9/geometa/man/ISORole.Rd | 12 geometa-0.9/geometa/man/ISORoleType.Rd | 8 geometa-0.9/geometa/man/ISOSRVParameter.Rd |only geometa-0.9/geometa/man/ISOSRVParameterDirection.Rd |only geometa-0.9/geometa/man/ISOSRVServiceIdentification.Rd | 42 geometa-0.9/geometa/man/ISOSRVServiceIdentification19115_3.Rd |only geometa-0.9/geometa/man/ISOSRVServiceIdentification19139.Rd |only geometa-0.9/geometa/man/ISOSampleBasedInspection.Rd |only geometa-0.9/geometa/man/ISOSampleDimension.Rd |only geometa-0.9/geometa/man/ISOScale.Rd | 12 geometa-0.9/geometa/man/ISOScope.Rd | 112 geometa-0.9/geometa/man/ISOScopeCode.Rd |only geometa-0.9/geometa/man/ISOScopeDescription.Rd | 12 geometa-0.9/geometa/man/ISOScopedName.Rd | 12 geometa-0.9/geometa/man/ISOSecurityConstraints.Rd | 20 geometa-0.9/geometa/man/ISOSensor.Rd | 11 geometa-0.9/geometa/man/ISOSeries.Rd | 83 geometa-0.9/geometa/man/ISOServiceIdentification.Rd | 33 geometa-0.9/geometa/man/ISOServiceIdentification19115_3.Rd |only geometa-0.9/geometa/man/ISOServiceIdentification19139.Rd |only geometa-0.9/geometa/man/ISOSource.Rd | 12 geometa-0.9/geometa/man/ISOSpatialRepresentation.Rd | 14 geometa-0.9/geometa/man/ISOSpatialRepresentationType.Rd | 14 geometa-0.9/geometa/man/ISOSpatialTemporalExtent.Rd | 12 geometa-0.9/geometa/man/ISOStandaloneQualityReportInformation.Rd |only geometa-0.9/geometa/man/ISOStandardOrderProcess.Rd | 52 geometa-0.9/geometa/man/ISOStatus.Rd | 19 geometa-0.9/geometa/man/ISOStereoMate.Rd | 8 geometa-0.9/geometa/man/ISOTelephone.Rd | 55 geometa-0.9/geometa/man/ISOTelephoneType.Rd |only geometa-0.9/geometa/man/ISOTemporalConsistency.Rd | 17 geometa-0.9/geometa/man/ISOTemporalExtent.Rd | 12 geometa-0.9/geometa/man/ISOTemporalValidity.Rd | 17 geometa-0.9/geometa/man/ISOThematicClassificationCorrectness.Rd | 17 geometa-0.9/geometa/man/ISOTopicCategory.Rd | 12 geometa-0.9/geometa/man/ISOTopologicalConsistency.Rd | 17 geometa-0.9/geometa/man/ISOTopologyLevel.Rd | 12 geometa-0.9/geometa/man/ISOTypeName.Rd | 12 geometa-0.9/geometa/man/ISOURI.Rd |only geometa-0.9/geometa/man/ISOURL.Rd | 8 geometa-0.9/geometa/man/ISOUnlimitedInteger.Rd | 12 geometa-0.9/geometa/man/ISOUomIdentifier.Rd |only geometa-0.9/geometa/man/ISOUsabilityElement.Rd |only geometa-0.9/geometa/man/ISOUsage.Rd | 18 geometa-0.9/geometa/man/ISOVectorSpatialRepresentation.Rd | 14 geometa-0.9/geometa/man/ISOVerticalExtent.Rd | 12 geometa-0.9/geometa/man/SWEAbstractDataComponent.Rd | 8 geometa-0.9/geometa/man/SWEAbstractEncoding.Rd | 8 geometa-0.9/geometa/man/SWEAbstractObject.Rd | 8 geometa-0.9/geometa/man/SWEAbstractSWE.Rd | 8 geometa-0.9/geometa/man/SWEAbstractSWEIdentifiable.Rd | 8 geometa-0.9/geometa/man/SWEAbstractSimpleComponent.Rd | 8 geometa-0.9/geometa/man/SWECategory.Rd | 8 geometa-0.9/geometa/man/SWECategoryRange.Rd | 8 geometa-0.9/geometa/man/SWECount.Rd | 8 geometa-0.9/geometa/man/SWECountRange.Rd | 8 geometa-0.9/geometa/man/SWEDataRecord.Rd | 8 geometa-0.9/geometa/man/SWEElement.Rd | 10 geometa-0.9/geometa/man/SWENilValues.Rd | 8 geometa-0.9/geometa/man/SWEQuantity.Rd | 8 geometa-0.9/geometa/man/SWEQuantityRange.Rd | 8 geometa-0.9/geometa/man/SWEText.Rd | 8 geometa-0.9/geometa/man/SWETextEncoding.Rd | 8 geometa-0.9/geometa/man/SWETime.Rd | 8 geometa-0.9/geometa/man/SWETimeRange.Rd | 8 geometa-0.9/geometa/man/SWEXMLEncoding.Rd | 8 geometa-0.9/geometa/man/geometa.Rd | 7 geometa-0.9/geometa/man/geometaLogger.Rd | 4 geometa-0.9/geometa/man/geometa_coverage.Rd | 7 geometa-0.9/geometa/man/getISOClasses.Rd | 4 geometa-0.9/geometa/man/getISOCodelists.Rd | 6 geometa-0.9/geometa/man/getISOMetadataSchemaFile.Rd |only geometa-0.9/geometa/man/getISOMetadataSchemas.Rd | 10 geometa-0.9/geometa/man/getMetadataStandard.Rd |only geometa-0.9/geometa/man/pivot_converter.Rd | 4 geometa-0.9/geometa/man/pivot_format.Rd | 4 geometa-0.9/geometa/man/readISO.Rd |only geometa-0.9/geometa/man/readISO19139.Rd | 2 geometa-0.9/geometa/man/registerISOCodelist.Rd | 5 geometa-0.9/geometa/man/registerISOMetadataSchema.Rd | 9 geometa-0.9/geometa/man/setISOCodelists.Rd | 16 geometa-0.9/geometa/man/setISOMetadataNamespaces.Rd | 33 geometa-0.9/geometa/man/setISOMetadataSchemas.Rd | 12 geometa-0.9/geometa/man/setMetadataStandard.Rd |only geometa-0.9/geometa/tests/testthat/test_INSPIREMetadataValidator.R | 22 geometa-0.9/geometa/tests/testthat/test_ISOBaseBoolean.R | 21 geometa-0.9/geometa/tests/testthat/test_ISOBaseCharacterString.R | 18 geometa-0.9/geometa/tests/testthat/test_ISOBoundingPolygon.R | 25 geometa-0.9/geometa/tests/testthat/test_ISOCitationSeries.R | 64 geometa-0.9/geometa/tests/testthat/test_ISOCodelistCatalogue.R |only geometa-0.9/geometa/tests/testthat/test_ISOContact.R | 36 geometa-0.9/geometa/tests/testthat/test_ISODataQuality.R | 4 geometa-0.9/geometa/tests/testthat/test_ISOExtent.R | 37 geometa-0.9/geometa/tests/testthat/test_ISOFeatureAssociation.R | 2 geometa-0.9/geometa/tests/testthat/test_ISOFeatureCatalogue.R | 88 geometa-0.9/geometa/tests/testthat/test_ISOGeographicBoundingBox.R | 18 geometa-0.9/geometa/tests/testthat/test_ISOGeographicDescription.R | 20 geometa-0.9/geometa/tests/testthat/test_ISOGeorectified.R | 4 geometa-0.9/geometa/tests/testthat/test_ISOImageryMetadata.R | 6 geometa-0.9/geometa/tests/testthat/test_ISOImageryPlan.R | 2 geometa-0.9/geometa/tests/testthat/test_ISOMetadata.R | 377 + geometa-0.9/geometa/tests/testthat/test_ISOOperationMetadata.R | 4 geometa-0.9/geometa/tests/testthat/test_ISOSRVParameter.R |only geometa-0.9/geometa/tests/testthat/test_ISOServiceIdentification.R | 16 geometa-0.9/geometa/tests/testthat/test_ISOSpatialTemporalExtent.R | 26 geometa-0.9/geometa/tests/testthat/test_ISOTemporalExtent.R | 46 geometa-0.9/geometa/tests/testthat/test_ISOVerticalExtent.R | 21 geometa-0.9/geometa/tests/testthat/test_geometa_mapping.R | 2 908 files changed, 13982 insertions(+), 7699 deletions(-)
Title: Infrastructure for Computing with Basis Functions
Description: Some very simple infrastructure for basis functions.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between basefun versions 1.2-1 dated 2025-01-17 and 1.2-2 dated 2025-01-29
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- inst/NEWS.Rd | 7 +++++++ man/Bernstein_basis.Rd | 6 +++--- tests/bases-Ex.R | 18 +++++++++--------- 5 files changed, 28 insertions(+), 21 deletions(-)
Title: A Template for Creating Reproducible 'shiny' Applications
Description: Create a skeleton 'shiny' application with create_template() that is
reproducible, can be saved and meets academic standards for attribution.
Forked from 'wallace'. Code is split into modules that are loaded and linked
together automatically and each call one function. Guidance pages explain
modules to users and flexible logging informs them of any errors. Options
enable asynchronous operations, viewing of source code, interactive maps and
data tables. Use to create complex analytical applications, following best
practices in open science and software development. Includes functions for
automating repetitive development tasks and an example application at
run_shinyscholar() that requires
install.packages("shinyscholar", dependencies = TRUE). A guide to developing
applications can be found on the package website.
Author: Simon E. H. Smart [aut, cre, cph],
Tim Lucas [aut] ,
Jamie M. Kass [ctb],
Gonzalo E. Pinilla-Buitrago [ctb],
Andrea Paz [ctb],
Bethany A. Johnson [ctb],
Valentina Grisales-Betancur [ctb],
Dean Attali [ctb],
Matthew E. Aiello-Lammens [ctb],
Cory Merow [...truncated...]
Maintainer: Simon E. H. Smart <simon.smart@cantab.net>
Diff between shinyscholar versions 0.2.3 dated 2025-01-17 and 0.2.4 dated 2025-01-29
DESCRIPTION | 8 - MD5 | 46 ++++----- NEWS.md | 12 +- R/create_template.R | 96 +++++++++++++------ R/custom_modules.R | 6 + R/helper_functions.R | 44 +-------- R/select_async_f.R | 10 +- R/select_query_f.R | 10 +- README.md | 2 inst/app_skeleton/DESCRIPTION | 11 +- inst/app_skeleton/global.Rmd | 4 inst/app_skeleton/helper_functions.R | 40 +------- inst/app_skeleton/server.Rmd | 12 +- inst/module_skeleton/skeleton_async.R | 6 - inst/shiny/Rmd/text_intro_tab.Rmd | 2 inst/shiny/Rmd/userReport_intro.Rmd | 2 inst/shiny/modules/plot_hist.R | 2 inst/shiny/modules/select_async.R | 14 +- inst/shiny/modules/select_query.R | 11 +- inst/shiny/server.R | 10 +- man/printVecAsis.Rd | 10 -- tests/testthat/test-create_template.R | 164 +++++++++++++++++++++++----------- tests/testthat/test-helpers.R | 12 ++ tests/testthat/test-metadata.R | 147 +++++++++++++++--------------- 24 files changed, 379 insertions(+), 302 deletions(-)
Title: 'Rcpp' Integration of the 'Streamulus' 'DSEL' for Stream
Processing
Description: The 'Streamulus' (template, header-only) library by
Irit Katriel (at <https://github.com/iritkatriel/streamulus>)
provides a very powerful yet convenient framework for stream
processing. This package connects 'Streamulus' to R by providing
both the header files and all examples.
Author: Dirk Eddelbuettel [aut, cre] ,
Irit Katriel [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppStreams versions 0.1.3 dated 2019-02-25 and 0.1.4 dated 2025-01-29
ChangeLog | 50 ++++++++++++++++++++++++++++++++++++++++++++++++++ DESCRIPTION | 16 ++++++++++------ MD5 | 10 +++++----- README.md | 9 +++++++-- inst/NEWS.Rd | 8 ++++++++ src/Makevars | 3 --- 6 files changed, 80 insertions(+), 16 deletions(-)
Title: Pathways Longitudinal and Differential Analysis in Metabolomics
Description: Perform a differential analysis at pathway level based on metabolite quantifications and information on pathway metabolite composition.
The method is based on a Principal Component Analysis step and on a linear mixed model.
Automatic query of metabolic pathways is also implemented.
Author: Camille Guilmineau [aut, cre],
Remi Servien [aut] ,
Nathalie Vialaneix [aut]
Maintainer: Camille Guilmineau <camille.guilmineau@inrae.fr>
Diff between phoenics versions 0.4 dated 2024-12-12 and 0.5 dated 2025-01-29
DESCRIPTION | 12 MD5 | 43 +- NAMESPACE | 80 ++-- NEWS.md | 55 +- R/data.R | 126 +++--- R/from_ASICS_to_PHOENICS.R | 128 +++--- R/overlap_coefficient.R | 262 +++++++------- R/pathwayRes-class.R | 507 +++++++++++++-------------- R/pathway_search.R | 212 +++++------ R/test_pathway.R | 648 +++++++++++++++++------------------ R/use_KEGGREST.R | 22 - build/partial.rdb |binary build/vignette.rds |only inst/CITATION | 54 +- inst/adddata/ASICS_library_codes.txt | 438 +++++++++++------------ inst/doc |only man/MTBLS422.Rd | 2 man/from_ASICS_to_PHOENICS.Rd | 88 ++-- man/overlap_coefficient.Rd | 138 +++---- man/pathwayRes.Rd | 190 +++++----- man/pathway_search.Rd | 102 ++--- man/test_pathway.Rd | 238 ++++++------ vignettes |only 23 files changed, 1674 insertions(+), 1671 deletions(-)
Title: Read and Write 'Parquet' Files
Description: Self-sufficient reader and writer for flat 'Parquet' files.
Can read most 'Parquet' data types. Can write many 'R' data types,
including factors and temporal types. See docs for limitations.
Author: Gabor Csardi [aut, cre],
Hannes Muehleisen [aut, cph] ,
Google Inc. [cph],
Apache Software Foundation [cph],
Posit Software, PBC [cph],
RAD Game Tools [cph],
Valve Software [cph],
Tenacious Software LLC [cph],
Facebook, Inc. [cph]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between nanoparquet versions 0.3.1 dated 2024-07-01 and 0.4.0 dated 2025-01-29
nanoparquet-0.3.1/nanoparquet/R/nanoparquet.R |only nanoparquet-0.3.1/nanoparquet/man/parquet_info.Rd |only nanoparquet-0.3.1/nanoparquet/man/parquet_metadata.Rd |only nanoparquet-0.3.1/nanoparquet/man/parquet_pages.Rd |only nanoparquet-0.3.1/nanoparquet/src/lib/ParquetFile.cpp |only nanoparquet-0.3.1/nanoparquet/src/lib/ParquetFile.h |only nanoparquet-0.3.1/nanoparquet/src/read.cpp |only nanoparquet-0.3.1/nanoparquet/src/write.cpp |only nanoparquet-0.4.0/nanoparquet/DESCRIPTION | 16 nanoparquet-0.4.0/nanoparquet/MD5 | 183 +- nanoparquet-0.4.0/nanoparquet/NAMESPACE | 5 nanoparquet-0.4.0/nanoparquet/NEWS.md | 84 + nanoparquet-0.4.0/nanoparquet/R/arrow-schema.R | 64 nanoparquet-0.4.0/nanoparquet/R/infer-parquet-schema.R |only nanoparquet-0.4.0/nanoparquet/R/nanoparquet-package.R | 12 nanoparquet-0.4.0/nanoparquet/R/options.R | 70 nanoparquet-0.4.0/nanoparquet/R/parquet-column-types.R |only nanoparquet-0.4.0/nanoparquet/R/parquet-metadata.R |only nanoparquet-0.4.0/nanoparquet/R/porcelain.R | 31 nanoparquet-0.4.0/nanoparquet/R/print.R | 2 nanoparquet-0.4.0/nanoparquet/R/read-parquet.R |only nanoparquet-0.4.0/nanoparquet/R/schema.R |only nanoparquet-0.4.0/nanoparquet/R/utils.R | 67 nanoparquet-0.4.0/nanoparquet/R/write-parquet.R |only nanoparquet-0.4.0/nanoparquet/README.md | 45 nanoparquet-0.4.0/nanoparquet/inst/WORDLIST | 16 nanoparquet-0.4.0/nanoparquet/man/append_parquet.Rd |only nanoparquet-0.4.0/nanoparquet/man/infer_parquet_schema.Rd |only nanoparquet-0.4.0/nanoparquet/man/nanoparquet-package.Rd | 46 nanoparquet-0.4.0/nanoparquet/man/nanoparquet-types.Rd | 115 + nanoparquet-0.4.0/nanoparquet/man/parquet-encodings.Rd |only nanoparquet-0.4.0/nanoparquet/man/parquet_column_types.Rd | 13 nanoparquet-0.4.0/nanoparquet/man/parquet_options.Rd | 45 nanoparquet-0.4.0/nanoparquet/man/parquet_schema.Rd | 128 + nanoparquet-0.4.0/nanoparquet/man/read_parquet.Rd | 22 nanoparquet-0.4.0/nanoparquet/man/read_parquet_info.Rd |only nanoparquet-0.4.0/nanoparquet/man/read_parquet_metadata.Rd |only nanoparquet-0.4.0/nanoparquet/man/read_parquet_page.Rd | 8 nanoparquet-0.4.0/nanoparquet/man/read_parquet_pages.Rd |only nanoparquet-0.4.0/nanoparquet/man/read_parquet_schema.Rd |only nanoparquet-0.4.0/nanoparquet/man/write_parquet.Rd | 46 nanoparquet-0.4.0/nanoparquet/src/Makevars | 16 nanoparquet-0.4.0/nanoparquet/src/RParquetAppender.cpp |only nanoparquet-0.4.0/nanoparquet/src/RParquetAppender.h |only nanoparquet-0.4.0/nanoparquet/src/RParquetOutFile.cpp |only nanoparquet-0.4.0/nanoparquet/src/RParquetOutFile.h |only nanoparquet-0.4.0/nanoparquet/src/RParquetReader.cpp |only nanoparquet-0.4.0/nanoparquet/src/RParquetReader.h |only nanoparquet-0.4.0/nanoparquet/src/arrow-schema.cpp | 13 nanoparquet-0.4.0/nanoparquet/src/broken.cpp |only nanoparquet-0.4.0/nanoparquet/src/cpp-utils.cpp |only nanoparquet-0.4.0/nanoparquet/src/dictionary-encoding.cpp | 152 +- nanoparquet-0.4.0/nanoparquet/src/encodings.cpp | 22 nanoparquet-0.4.0/nanoparquet/src/lib/ParquetOutFile.cpp | 723 ++++++---- nanoparquet-0.4.0/nanoparquet/src/lib/ParquetOutFile.h | 164 +- nanoparquet-0.4.0/nanoparquet/src/lib/ParquetReader.cpp |only nanoparquet-0.4.0/nanoparquet/src/lib/ParquetReader.h |only nanoparquet-0.4.0/nanoparquet/src/lib/RleBpDecoder.h | 35 nanoparquet-0.4.0/nanoparquet/src/lib/RleBpEncoder.h | 31 nanoparquet-0.4.0/nanoparquet/src/lib/bitpacker.h | 6 nanoparquet-0.4.0/nanoparquet/src/lib/bytebuffer.h | 37 nanoparquet-0.4.0/nanoparquet/src/lib/memstream.h | 18 nanoparquet-0.4.0/nanoparquet/src/lib/nanoparquet.h | 1 nanoparquet-0.4.0/nanoparquet/src/miniz/miniz_wrapper.hpp | 4 nanoparquet-0.4.0/nanoparquet/src/protect.cpp | 29 nanoparquet-0.4.0/nanoparquet/src/protect.h | 58 nanoparquet-0.4.0/nanoparquet/src/r-nanoparquet.h |only nanoparquet-0.4.0/nanoparquet/src/r-utils.cpp |only nanoparquet-0.4.0/nanoparquet/src/read-metadata.cpp | 92 - 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Title: Optimization Frameworks for Tie-Oriented and Actor-Oriented
Relational Event Models
Description: A comprehensive set of tools designed for optimizing likelihood within a tie-oriented (Butts, C., 2008, <doi:10.1111/j.1467-9531.2008.00203.x>) or an actor-oriented modelling framework (Stadtfeld, C., & Block, P., 2017, <doi:10.15195/v4.a14>) in relational event networks. The package accommodates both frequentist and Bayesian approaches. The frequentist approaches that the package incorporates are the Maximum Likelihood Optimization (MLE) and the Gradient-based Optimization (GDADAMAX). The Bayesian methodologies included in the package are the Bayesian Sampling Importance Resampling (BSIR) and the Hamiltonian Monte Carlo (HMC). The flexibility of choosing between frequentist and Bayesian optimization approaches allows researchers to select the estimation approach which aligns the most with their analytical preferences.
Author: Giuseppe Arena [aut, cre] ,
Rumana Lakdawala [aut],
Fabio Generoso Vieira [aut],
Marlyne Meijerink-Bosman [ctb],
Diana Karimova [ctb],
Mahdi Shafiee Kamalabad [ctb],
Roger Leenders [ctb],
Joris Mulder [ctb]
Maintainer: Giuseppe Arena <g.arena@uva.nl>
Diff between remstimate versions 2.3.11 dated 2024-05-16 and 2.3.13 dated 2025-01-29
DESCRIPTION | 26 +++++++++++--------------- LICENSE | 2 +- MD5 | 14 +++++++------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/remstimate.html | 46 +++++++++++++++++++++++----------------------- man/remstimate-package.Rd | 11 +++++------ src/remstimate.cpp | 10 +++++++--- 8 files changed, 54 insertions(+), 55 deletions(-)
Title: Computes Statistics for Relational Event History Data
Description: Computes a variety of statistics for relational event models. Relational event models enable researchers to investigate both exogenous and endogenous factors influencing the evolution of a time-ordered sequence of events. These models are categorized into tie-oriented models (Butts, C., 2008, <doi:10.1111/j.1467-9531.2008.00203.x>), where the probability of a dyad interacting next is modeled in a single step, and actor-oriented models (Stadtfeld, C., & Block, P., 2017, <doi:10.15195/v4.a14>), which first model the probability of a sender initiating an interaction and subsequently the probability of the sender's choice of receiver. The package is designed to compute a variety of statistics that summarize exogenous and endogenous influences on the event stream for both types of models.
Author: Giuseppe Arena [aut, cre] ,
Marlyne Meijerink-Bosman [aut],
Diana Karimova [ctb],
Rumana Lakdawala [ctb],
Mahdi Shafiee Kamalabad [ctb],
Fabio Generoso Vieira [ctb],
Roger Leenders [ctb],
Joris Mulder [ctb]
Maintainer: Giuseppe Arena <g.arena@uva.nl>
Diff between remstats versions 3.2.2 dated 2024-05-15 and 3.2.4 dated 2025-01-29
DESCRIPTION | 26 +++++++++++--------------- LICENSE | 2 +- MD5 | 10 +++++----- build/partial.rdb |binary build/vignette.rds |binary inst/doc/remstats.html | 5 +++-- 6 files changed, 20 insertions(+), 23 deletions(-)
Title: Processing and Transforming Relational Event History Data
Description: Efficiently processes relational event history data and transforms them into formats suitable for other packages. The primary objective of this package is to convert event history data into a format that integrates with the packages in 'remverse' and is compatible with various analytical tools (e.g., computing network statistics, estimating tie-oriented or actor-oriented social network models). Second, it can also transform the data into formats compatible with other packages out of 'remverse'. The package processes the data for two types of temporal social network models: tie-oriented modeling framework (Butts, C., 2008, <doi:10.1111/j.1467-9531.2008.00203.x>) and actor-oriented modeling framework (Stadtfeld, C., & Block, P., 2017, <doi:10.15195/v4.a14>).
Author: Giuseppe Arena [aut, cre] ,
Rumana Lakdawala [ctb],
Marlyne Meijerink-Bosman [ctb],
Diana Karimova [ctb],
Fabio Generoso Vieira [ctb],
Mahdi Shafiee Kamalabad [ctb],
Roger Leenders [ctb],
Joris Mulder [ctb]
Maintainer: Giuseppe Arena <g.arena@uva.nl>
Diff between remify versions 3.2.6 dated 2024-05-15 and 3.2.8 dated 2025-01-29
DESCRIPTION | 28 ++++++++++++---------------- LICENSE | 2 +- MD5 | 17 +++++++++-------- NEWS.md |only build/partial.rdb |binary build/vignette.rds |binary inst/doc/rehshape.html | 5 +++-- inst/doc/remify.html | 7 ++++--- inst/doc/riskset.html | 5 +++-- man/remify-package.Rd | 13 ++++++------- 10 files changed, 38 insertions(+), 39 deletions(-)
Title: An Introduction to Applied Multivariate Analysis with R
Description: Functions, data sets, analyses and examples from the book
`An Introduction to Applied Multivariate Analysis with R'
(Brian S. Everitt and Torsten Hothorn, Springer, 2011).
Author: Brian S. Everitt [aut],
Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between MVA versions 1.0-8 dated 2022-03-18 and 1.0-9 dated 2025-01-29
DESCRIPTION | 23 ++++++++++++++++------- MD5 | 6 +++--- build/vignette.rds |binary inst/doc/Ch-Errata.pdf |binary 4 files changed, 19 insertions(+), 10 deletions(-)
Title: Algebraic Tools for the Analysis of Multiple Social Networks
Description: Algebraic procedures for analyses of multiple social networks are delivered with this
package as described in Ostoic (2020) <DOI:10.18637/jss.v092.i11>. 'multiplex' makes
possible, among other things, to create and manipulate multiplex, multimode, and
multilevel network data with different formats. Effective ways are available to treat
multiple networks with routines that combine algebraic systems like the partially ordered
semigroup with decomposition procedures or semiring structures with the relational
bundles occurring in different types of multivariate networks. 'multiplex' provides also
an algebraic approach for affiliation networks through Galois derivations between families
of the pairs of subsets in the two domains of the network with visualization options.
Author: Antonio Rivero Ostoic [aut, cre]
Maintainer: Antonio Rivero Ostoic <multiplex@post.com>
Diff between multiplex versions 3.8-3 dated 2024-11-06 and 3.9 dated 2025-01-29
DESCRIPTION | 8 ++-- MD5 | 28 +++++++-------- R/as.semigroup.R | 39 +++++++++++++------- R/cngr.R | 4 +- R/decomp.R | 35 +++++++++--------- R/fact.R | 8 ++-- R/green.rel.R | 36 +++++++++---------- R/reducs.R | 8 ++-- R/rel.sys.R | 80 ++++++++++++++++++++++++++++--------------- R/sprt.R | 22 +++++------ R/transf.R | 21 ++++++++--- inst/CHANGELOG | 8 ++++ inst/doc/TwoModeNetworks.pdf |binary man/green.rel.Rd | 4 +- man/multiplex-package.Rd | 4 +- 15 files changed, 179 insertions(+), 126 deletions(-)
Title: Credible Visualization for Two-Dimensional Projections of Data
Description: Projections are common dimensionality reduction methods, which represent high-dimensional data in a two-dimensional space. However, when restricting the output space to two dimensions, which results in a two dimensional scatter plot (projection) of the data, low dimensional similarities do not represent high dimensional distances coercively [Thrun, 2018] <DOI: 10.1007/978-3-658-20540-9>. This could lead to a misleading interpretation of the underlying structures [Thrun, 2018]. By means of the 3D topographic map the generalized Umatrix is able to depict errors of these two-dimensional scatter plots. The package is derived from the book of Thrun, M.C.: "Projection Based Clustering through Self-Organization and Swarm Intelligence" (2018) <DOI:10.1007/978-3-658-20540-9> and the main algorithm called simplified self-organizing map for dimensionality reduction methods is published in <DOI: 10.1016/j.mex.2020.101093>.
Author: Michael Thrun [aut, cre, cph] ,
Felix Pape [ctb, ctr],
Tim Schreier [ctb, ctr],
Luis Winckelman [ctb, ctr],
Quirin Stier [ctb, ctr] ,
Alfred Ultsch [ths]
Maintainer: Michael Thrun <m.thrun@gmx.net>
Diff between GeneralizedUmatrix versions 1.2.6 dated 2023-05-30 and 1.3.1 dated 2025-01-29
DESCRIPTION | 12 - MD5 | 49 ++--- NAMESPACE | 1 R/GeneralizedUmatrix.R | 30 +-- R/GeneratePmatrix.R | 196 +++++++++++----------- R/NormalizeUmatrix.R | 75 -------- R/RcppExports.R | 8 R/TopviewTopographicMap.R | 67 +++++-- R/sESOM4BMUs.R | 35 ++-- README.md | 70 +++++++- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 2 inst/doc/GeneralizedUmatrix.R | 8 inst/doc/GeneralizedUmatrix.Rmd | 2 inst/doc/GeneralizedUmatrix.html | 200 +++++++++++++---------- man/GeneralizedUmatrix.Rd | 6 man/TopviewTopographicMap.Rd | 16 + man/trainstepC.Rd | 3 man/trainstepC2.Rd |only src/Makevars | 10 - src/Makevars.win | 12 - src/RcppExports.cpp | 18 +- src/trainstepC.cpp | 133 ++++++++------- src/trainstepC2.cpp | 339 +++++++++++---------------------------- vignettes/GeneralizedUmatrix.Rmd | 2 26 files changed, 614 insertions(+), 680 deletions(-)
More information about GeneralizedUmatrix at CRAN
Permanent link
Title: A Laboratory for Recursive Partytioning
Description: A computational toolbox for recursive partitioning.
The core of the package is ctree(), an implementation of
conditional inference trees which embed tree-structured
regression models into a well defined theory of conditional
inference procedures. This non-parametric class of regression
trees is applicable to all kinds of regression problems, including
nominal, ordinal, numeric, censored as well as multivariate response
variables and arbitrary measurement scales of the covariates.
Based on conditional inference trees, cforest() provides an
implementation of Breiman's random forests. The function mob()
implements an algorithm for recursive partitioning based on
parametric models (e.g. linear models, GLMs or survival
regression) employing parameter instability tests for split
selection. Extensible functionality for visualizing tree-structured
regression models is available. The methods are described in
Hothorn et al. (2006) <doi:10.1198/106186006X133933>,
Zeileis et al. (2008) <d [...truncated...]
Author: Torsten Hothorn [aut, cre] ,
Kurt Hornik [aut] ,
Carolin Strobl [aut] ,
Achim Zeileis [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between party versions 1.3-17 dated 2024-08-17 and 1.3-18 dated 2025-01-29
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ build/partial.rdb |binary build/vignette.rds |binary inst/NEWS | 4 ++++ inst/doc/MOB.pdf |binary inst/doc/party.pdf |binary 7 files changed, 15 insertions(+), 11 deletions(-)
Title: Community Ecology Package
Description: Ordination methods, diversity analysis and other
functions for community and vegetation ecologists.
Author: Jari Oksanen [aut, cre],
Gavin L. Simpson [aut],
F. Guillaume Blanchet [aut],
Roeland Kindt [aut],
Pierre Legendre [aut],
Peter R. Minchin [aut],
R.B. O'Hara [aut],
Peter Solymos [aut],
M. Henry H. Stevens [aut],
Eduard Szoecs [aut],
Helene Wagner [a [...truncated...]
Maintainer: Jari Oksanen <jhoksane@gmail.com>
Diff between vegan versions 2.6-8 dated 2024-08-28 and 2.6-10 dated 2025-01-29
DESCRIPTION | 12 ++++--- MD5 | 62 +++++++++++++++++++-------------------- R/anova.ccabyterm.R | 13 +++++--- R/designdist.R | 8 ++--- R/envfit.default.R | 9 +++++ R/goodness.cca.R | 2 + R/linestack.R | 9 +++-- R/metaMDSiter.R | 8 ++--- R/oecosimu.R | 7 +++- R/ordibar.R | 13 +++----- R/ordicluster.R | 10 +++--- R/ordiellipse.R | 14 +++----- R/ordispider.R | 15 ++++----- R/ordisurf.R | 10 +++--- R/vegemite.R | 6 +-- R/zzz.R | 9 +++-- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.md | 28 +++++++++++++++++ inst/doc/FAQ-vegan.R | 8 ++--- inst/doc/decision-vegan.pdf |binary inst/doc/diversity-vegan.pdf |binary inst/doc/intro-vegan.pdf |binary inst/doc/partitioning.pdf |binary man/designdist.Rd | 9 ++++- man/envfit.Rd | 3 - man/metaMDS.Rd | 3 + man/ordihull.Rd | 15 +++------ man/ordisurf.Rd | 18 ++++++----- src/getF.c | 31 ++++++++----------- tests/cca-object-tests.R | 2 - tests/cca-object-tests.Rout.save | 6 +-- 32 files changed, 190 insertions(+), 140 deletions(-)
Title: Fast Numerical Maximum Likelihood Estimation for Latent Markov
Models
Description: A variety of latent Markov models, including hidden Markov models, hidden semi-Markov models,
state-space models and continuous-time variants can be formulated and estimated within the same framework via directly maximising the likelihood function using the so-called forward algorithm.
Applied researchers often need custom models that standard software does not easily support.
Writing tailored 'R' code offers flexibility but suffers from slow estimation speeds.
We address these issues by providing easy-to-use functions (written in 'C++' for speed) for common tasks like the forward algorithm.
These functions can be combined into custom models in a Lego-type approach, offering up to 10-20 times faster estimation via standard numerical optimisers.
To aid in building fully custom likelihood functions, several vignettes are included that show how to simulate data from and estimate all the above model classes.
Author: Jan-Ole Koslik [aut, cre]
Maintainer: Jan-Ole Koslik <jan-ole.koslik@uni-bielefeld.de>
Diff between LaMa versions 2.0.2 dated 2024-11-20 and 2.0.3 dated 2025-01-29
LaMa-2.0.2/LaMa/vignettes/HSMMs_cache/html/model_muskox_bc79f9de982e1ba8aa0670dd63a810ff.RData |only LaMa-2.0.2/LaMa/vignettes/HSMMs_cache/html/model_muskox_bc79f9de982e1ba8aa0670dd63a810ff.rdb |only LaMa-2.0.2/LaMa/vignettes/HSMMs_cache/html/model_muskox_bc79f9de982e1ba8aa0670dd63a810ff.rdx |only LaMa-2.0.2/LaMa/vignettes/Longitudinal_data_cache/html/model_pool_69f7c62b62ac06046ca6f4be3205495c.RData |only LaMa-2.0.2/LaMa/vignettes/Longitudinal_data_cache/html/model_pool_69f7c62b62ac06046ca6f4be3205495c.rdb |only LaMa-2.0.2/LaMa/vignettes/Longitudinal_data_cache/html/model_pool_69f7c62b62ac06046ca6f4be3205495c.rdx |only LaMa-2.0.2/LaMa/vignettes/State_space_models_cache/html/model_1cac96c46f5385620f13ae0141907771.RData |only LaMa-2.0.2/LaMa/vignettes/State_space_models_cache/html/model_1cac96c46f5385620f13ae0141907771.rdb |only LaMa-2.0.2/LaMa/vignettes/State_space_models_cache/html/model_1cac96c46f5385620f13ae0141907771.rdx |only LaMa-2.0.3/LaMa/DESCRIPTION | 8 LaMa-2.0.3/LaMa/MD5 | 78 +-- LaMa-2.0.3/LaMa/NAMESPACE | 14 LaMa-2.0.3/LaMa/R/distribution_functions.R | 186 ++++++++ LaMa-2.0.3/LaMa/R/forward_algorithms.R | 11 LaMa-2.0.3/LaMa/R/helper_functions.R | 36 + LaMa-2.0.3/LaMa/R/qreml_functions.R | 210 +++++++--- LaMa-2.0.3/LaMa/R/residual_functions.R | 18 LaMa-2.0.3/LaMa/R/stationary_functions.R | 3 LaMa-2.0.3/LaMa/R/tpm_functions.R | 29 + LaMa-2.0.3/LaMa/README.md | 21 - LaMa-2.0.3/LaMa/inst/doc/Continuous_time_HMMs.html | 4 LaMa-2.0.3/LaMa/inst/doc/HSMMs.html | 18 LaMa-2.0.3/LaMa/inst/doc/Inhomogeneous_HMMs.html | 4 LaMa-2.0.3/LaMa/inst/doc/Intro_to_LaMa.html | 2 LaMa-2.0.3/LaMa/inst/doc/LaMa_and_RTMB.html | 2 LaMa-2.0.3/LaMa/inst/doc/Longitudinal_data.html | 6 LaMa-2.0.3/LaMa/inst/doc/MMMPPs.html | 2 LaMa-2.0.3/LaMa/inst/doc/Penalised_splines.R | 5 LaMa-2.0.3/LaMa/inst/doc/Penalised_splines.Rmd | 24 - LaMa-2.0.3/LaMa/inst/doc/Penalised_splines.html | 159 ++++--- LaMa-2.0.3/LaMa/inst/doc/Periodic_HMMs.html | 2 LaMa-2.0.3/LaMa/inst/doc/State_space_models.html | 2 LaMa-2.0.3/LaMa/man/dirichlet.Rd |only LaMa-2.0.3/LaMa/man/forward_g.Rd | 11 LaMa-2.0.3/LaMa/man/gdeterminant.Rd |only LaMa-2.0.3/LaMa/man/penalty.Rd | 8 LaMa-2.0.3/LaMa/man/qreml.Rd | 20 LaMa-2.0.3/LaMa/man/skewnorm.Rd |only LaMa-2.0.3/LaMa/man/vm.Rd | 2 LaMa-2.0.3/LaMa/man/wrpcauchy.Rd |only LaMa-2.0.3/LaMa/vignettes/HSMMs_cache/html/model_muskox_0d1913889a2747d7aa3f1f6cfa49107a.RData |only LaMa-2.0.3/LaMa/vignettes/HSMMs_cache/html/model_muskox_0d1913889a2747d7aa3f1f6cfa49107a.rdb |only LaMa-2.0.3/LaMa/vignettes/HSMMs_cache/html/model_muskox_0d1913889a2747d7aa3f1f6cfa49107a.rdx |only LaMa-2.0.3/LaMa/vignettes/Longitudinal_data_cache/html/model_pool_bdbc676d53c696785c0c696f5ce773b0.RData |only LaMa-2.0.3/LaMa/vignettes/Longitudinal_data_cache/html/model_pool_bdbc676d53c696785c0c696f5ce773b0.rdb |only LaMa-2.0.3/LaMa/vignettes/Longitudinal_data_cache/html/model_pool_bdbc676d53c696785c0c696f5ce773b0.rdx |only LaMa-2.0.3/LaMa/vignettes/Penalised_splines.Rmd | 24 - LaMa-2.0.3/LaMa/vignettes/State_space_models_cache/html/model_46a7e06b11b906b085f0c97f16f50677.RData |only LaMa-2.0.3/LaMa/vignettes/State_space_models_cache/html/model_46a7e06b11b906b085f0c97f16f50677.rdb |only LaMa-2.0.3/LaMa/vignettes/State_space_models_cache/html/model_46a7e06b11b906b085f0c97f16f50677.rdx |only LaMa-2.0.3/LaMa/vignettes/refs.bib | 10 51 files changed, 641 insertions(+), 278 deletions(-)
Title: Comprehensive TIFF I/O with Full Support for 'ImageJ' TIFF Files
Description: General purpose TIFF file I/O for R users. Currently the
only such package with read and write support for TIFF files with
floating point (real-numbered) pixels, and the only package that can
correctly import TIFF files that were saved from 'ImageJ' and write
TIFF files than can be correctly read by 'ImageJ'
<https://imagej.net/ij/>. Also supports text image I/O.
Author: Rory Nolan [aut, cre] ,
Kent Johnson [aut],
Simon Urbanek [ctb],
Sergi Padilla-Parra [ths] ,
Jeroen Ooms [rev, ctb] ,
Jon Clayden [rev]
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between ijtiff versions 2.3.4 dated 2023-12-12 and 2.3.5 dated 2025-01-29
ijtiff-2.3.4/ijtiff/configure.win |only ijtiff-2.3.4/ijtiff/tests/testthat/test-graphics.R |only ijtiff-2.3.5/ijtiff/DESCRIPTION | 18 +- ijtiff-2.3.5/ijtiff/MD5 | 40 +++--- ijtiff-2.3.5/ijtiff/NEWS.md | 8 + ijtiff-2.3.5/ijtiff/R/graphics.R | 69 ++--------- ijtiff-2.3.5/ijtiff/R/ijtiff.R | 3 ijtiff-2.3.5/ijtiff/build/vignette.rds |binary ijtiff-2.3.5/ijtiff/inst/WORDLIST | 9 - ijtiff-2.3.5/ijtiff/inst/doc/reading-and-writing-images.R | 20 +-- ijtiff-2.3.5/ijtiff/inst/doc/reading-and-writing-images.Rmd | 24 ++- ijtiff-2.3.5/ijtiff/inst/doc/reading-and-writing-images.html | 32 ++--- ijtiff-2.3.5/ijtiff/inst/doc/text-images.html | 4 ijtiff-2.3.5/ijtiff/inst/doc/the-imagej-problem.R | 9 - ijtiff-2.3.5/ijtiff/inst/doc/the-imagej-problem.Rmd | 9 - ijtiff-2.3.5/ijtiff/inst/doc/the-imagej-problem.html | 12 - ijtiff-2.3.5/ijtiff/man/display.Rd | 32 +---- ijtiff-2.3.5/ijtiff/man/ijtiff.Rd | 26 ++++ ijtiff-2.3.5/ijtiff/src/Makevars.win | 15 ++ ijtiff-2.3.5/ijtiff/tests/testthat/test-print.R | 1 ijtiff-2.3.5/ijtiff/vignettes/reading-and-writing-images.Rmd | 24 ++- ijtiff-2.3.5/ijtiff/vignettes/the-imagej-problem.Rmd | 9 - 22 files changed, 186 insertions(+), 178 deletions(-)
Title: Import, Recompute and Analyze Data from Portable Gas Analyzers
Description: The gasanalyzer R package offers methods for importing, preprocessing,
and analyzing data related to photosynthetic characteristics (gas exchange,
chlorophyll fluorescence and isotope ratios). It translates variable names
into a standard format, and can recalculate derived, physiological
quantities using imported or predefined equations. The package also allows
users to assess the sensitivity of their results to different assumptions
used in the calculations.
See also Tholen (2024) <doi:10.1093/aobpla/plae035>.
Author: Danny Tholen [aut, cre]
Maintainer: Danny Tholen <thalecress+p@gmail.com>
Diff between gasanalyzer versions 0.4.2 dated 2024-12-03 and 0.4.3 dated 2025-01-29
DESCRIPTION | 10 - MD5 | 30 ++--- NAMESPACE | 1 NEWS.md | 7 + R/calc_data.R | 225 ++++++++++++++++++++++++++++++++++++---- R/equations.R | 207 ++++++++++++++++++++++++++++++++++++ R/read_ciras4.R | 15 +- R/read_gfs.R | 41 ++++--- R/sysdata.rda |binary R/utils.R | 89 +++++++++++++++ inst/WORDLIST | 16 ++ inst/doc/gasanalyzer.html | 22 ++- inst/extdata/vars.tsv | 10 + man/create_equations.Rd | 215 +++++++++++++++++++++++++++++++++++++- tests/testthat/test-equations.R | 2 tests/testthat/test-read_6800.R | 7 - 16 files changed, 809 insertions(+), 88 deletions(-)
Title: Super Learner for Survival Prediction from Censored Data
Description: Several functions and S3 methods to construct a super learner in the presence of censored times-to-event and to evaluate its prognostic capacities.
Author: Yohann Foucher [aut, cre] ,
Camille Sabathe [aut]
Maintainer: Yohann Foucher <yohann.foucher@univ-poitiers.fr>
Diff between survivalSL versions 0.96 dated 2024-08-26 and 0.97 dated 2025-01-29
DESCRIPTION | 6 +++--- MD5 | 6 +++--- man/survivalSL.Rd | 4 ++-- man/tunePHspline.Rd | 15 ++------------- 4 files changed, 10 insertions(+), 21 deletions(-)
Title: Interface to 'typeform' Results
Description: An R interface to the 'typeform' <https://www.typeform.com/>
application program interface. Also provides functions for
downloading your results.
Author: Colin Gillespie [aut, cre],
Jamie Owen [aut]
Maintainer: Colin Gillespie <csgillespie@gmail.com>
Diff between rtypeform versions 2.1.0 dated 2020-08-31 and 2.1.1 dated 2025-01-29
rtypeform-2.1.0/rtypeform/tests/testthat/form.rds |only rtypeform-2.1.0/rtypeform/tests/testthat/test_get_forms.R |only rtypeform-2.1.0/rtypeform/tests/testthat/test_get_responses.R |only rtypeform-2.1.0/rtypeform/tests/testthat/test_teams.R |only rtypeform-2.1.0/rtypeform/tests/testthat/test_workspaces.R |only rtypeform-2.1.1/rtypeform/DESCRIPTION | 35 +-- rtypeform-2.1.1/rtypeform/MD5 | 57 +++--- rtypeform-2.1.1/rtypeform/NAMESPACE | 34 --- rtypeform-2.1.1/rtypeform/NEWS.md | 10 - rtypeform-2.1.1/rtypeform/R/auth.R | 13 - rtypeform-2.1.1/rtypeform/R/delete_form.R | 2 rtypeform-2.1.1/rtypeform/R/delete_responses.R | 9 rtypeform-2.1.1/rtypeform/R/get_api.R | 10 - rtypeform-2.1.1/rtypeform/R/get_forms.R | 39 +--- rtypeform-2.1.1/rtypeform/R/get_responses.R | 87 ++++----- rtypeform-2.1.1/rtypeform/R/httr_responses.R | 12 - rtypeform-2.1.1/rtypeform/R/importFrom.R |only rtypeform-2.1.1/rtypeform/R/options.R | 11 - rtypeform-2.1.1/rtypeform/R/rest_argument_formatting.R | 9 rtypeform-2.1.1/rtypeform/R/teams.R | 2 rtypeform-2.1.1/rtypeform/R/themes.R | 91 ++++------ rtypeform-2.1.1/rtypeform/R/workspaces.R | 73 +++----- rtypeform-2.1.1/rtypeform/README.md | 55 ++---- rtypeform-2.1.1/rtypeform/man/create_theme.Rd | 26 +- rtypeform-2.1.1/rtypeform/man/delete_responses.Rd | 2 rtypeform-2.1.1/rtypeform/man/get_authorization.Rd | 2 rtypeform-2.1.1/rtypeform/man/get_responses.Rd | 2 rtypeform-2.1.1/rtypeform/man/post_response.Rd | 2 rtypeform-2.1.1/rtypeform/man/rtypeform_set_scope.Rd | 2 rtypeform-2.1.1/rtypeform/tests/testthat/test-get_forms.R |only rtypeform-2.1.1/rtypeform/tests/testthat/test-get_me.R |only rtypeform-2.1.1/rtypeform/tests/testthat/test-get_responses.R |only rtypeform-2.1.1/rtypeform/tests/testthat/test-teams.R |only rtypeform-2.1.1/rtypeform/tests/testthat/test-workspaces.R |only rtypeform-2.1.1/rtypeform/tests/testthat/test_api_response.R | 1 35 files changed, 260 insertions(+), 326 deletions(-)
Title: R Bindings for the 'prqlc' Rust Library
Description: Provides a function to convert 'PRQL' strings to 'SQL' strings.
Combined with other R functions that take 'SQL' as an argument,
'PRQL' can be used on R.
Author: Tatsuya Shima [aut, cre],
Authors of the dependency Rust crates [aut]
Maintainer: Tatsuya Shima <ts1s1andn@gmail.com>
Diff between prqlr versions 0.9.0 dated 2024-09-20 and 0.10.0 dated 2025-01-29
DESCRIPTION | 11 LICENSE.note | 276 +++++++++++++++++------ MD5 | 52 ++-- NAMESPACE | 2 NEWS.md | 11 R/000-wrappers.R | 52 ++-- R/compile.R | 28 +- R/knitr-engine.R | 4 README.md | 12 - configure | 21 - inst/AUTHORS | 36 ++- inst/doc/knitr.html | 8 inst/doc/prqlr.html | 2 man/prql_compile.Rd | 24 +- src/init.c | 28 +- src/rust/Cargo.lock | 408 ++++++++++++++++++++++++---------- src/rust/Cargo.toml | 12 - src/rust/api.h | 8 src/rust/src/lib.rs | 90 +++---- src/rust/vendor-config.toml | 5 src/rust/vendor.tar.xz |binary tests/testthat/_snaps/compile.md | 75 +++--- tests/testthat/_snaps/knitr-engine.md | 4 tests/testthat/test-compile.R | 33 ++ tests/testthat/test-knitr-engine.R | 4 tools/lib-sums.tsv | 10 tools/prep-lib.R | 33 +- 27 files changed, 836 insertions(+), 413 deletions(-)
Title: Sparse Arrays and Multivariate Polynomials
Description: Sparse arrays interpreted as multivariate polynomials.
Uses 'disordR' discipline (Hankin, 2022,
<doi:10.48550/ARXIV.2210.03856>). To cite the package in
publications please use Hankin (2022) <doi:10.48550/ARXIV.2210.10848>.
Author: Robin K. S. Hankin [aut, cre]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between spray versions 1.0-26 dated 2024-08-19 and 1.0-27 dated 2025-01-29
DESCRIPTION | 6 ++--- MD5 | 19 +++++++++--------- NEWS.md | 48 +++++++++++++++++++++++++---------------------- R/spray.R | 2 - build/vignette.rds |binary inst/doc/spray.pdf |binary man/Ops.spray.Rd | 3 +- man/print.Rd | 6 ++++- man/spraycross.Rd | 3 +- vignettes/spray.bib | 7 ++++++ vignettes/spraycross.Rmd |only 11 files changed, 56 insertions(+), 38 deletions(-)
Title: Manipulate SNOMED CT Diagnosis Lists
Description: Functions and methods for manipulating 'SNOMED CT'
concepts. The package contains functions for loading the 'SNOMED CT'
release into a convenient R environment, selecting 'SNOMED CT'
concepts using regular expressions, and navigating the 'SNOMED CT'
ontology. It provides the 'SNOMEDconcept' S3 class for a vector of
'SNOMED CT' concepts (stored as 64-bit integers) and the
'SNOMEDcodelist' S3 class for a table of concepts IDs with
descriptions. The package can be used to construct sets of
'SNOMED CT' concepts for research (<doi:10.1093/jamia/ocac158>).
For more information about 'SNOMED CT' visit
<https://www.snomed.org/>.
Author: Anoop D. Shah [aut, cre]
Maintainer: Anoop D. Shah <anoop@doctors.org.uk>
Diff between Rdiagnosislist versions 1.3 dated 2024-10-28 and 1.4.0 dated 2025-01-29
Rdiagnosislist-1.3/Rdiagnosislist/R/createComposeLookup.R |only Rdiagnosislist-1.3/Rdiagnosislist/data/MANUAL_SYNONYMS.csv.gz |only Rdiagnosislist-1.3/Rdiagnosislist/data/MANUAL_SYNONYMS.rda |only Rdiagnosislist-1.3/Rdiagnosislist/man/createComposeLookup.Rd |only Rdiagnosislist-1.4.0/Rdiagnosislist/DESCRIPTION | 33 - Rdiagnosislist-1.4.0/Rdiagnosislist/MD5 | 152 ++-- Rdiagnosislist-1.4.0/Rdiagnosislist/NAMESPACE | 2 Rdiagnosislist-1.4.0/Rdiagnosislist/NEWS | 20 Rdiagnosislist-1.4.0/Rdiagnosislist/R/CONCEPT.R | 1 Rdiagnosislist-1.4.0/Rdiagnosislist/R/DESCRIPTION.R | 1 Rdiagnosislist-1.4.0/Rdiagnosislist/R/EXTENDEDMAP.R | 1 Rdiagnosislist-1.4.0/Rdiagnosislist/R/HISTORY.R | 1 Rdiagnosislist-1.4.0/Rdiagnosislist/R/MANUAL_SYNONYMS.R | 2 Rdiagnosislist-1.4.0/Rdiagnosislist/R/READMAPS.R | 3 Rdiagnosislist-1.4.0/Rdiagnosislist/R/REFSET.R | 3 Rdiagnosislist-1.4.0/Rdiagnosislist/R/RELATIONSHIP.R | 1 Rdiagnosislist-1.4.0/Rdiagnosislist/R/SIMPLEMAP.R | 1 Rdiagnosislist-1.4.0/Rdiagnosislist/R/SNOMEDcodelist.R | 46 - Rdiagnosislist-1.4.0/Rdiagnosislist/R/addComposeLookupToCDB.R |only Rdiagnosislist-1.4.0/Rdiagnosislist/R/cdb.R | 195 ++++-- Rdiagnosislist-1.4.0/Rdiagnosislist/R/compose.R | 122 ++- Rdiagnosislist-1.4.0/Rdiagnosislist/R/concepts.R | 2 Rdiagnosislist-1.4.0/Rdiagnosislist/R/decompose.R | 291 +++++---- Rdiagnosislist-1.4.0/Rdiagnosislist/R/hierarchy.R | 89 +- Rdiagnosislist-1.4.0/Rdiagnosislist/R/htmlCodelistHierarchy.R | 3 Rdiagnosislist-1.4.0/Rdiagnosislist/R/loadSNOMED.R | 5 Rdiagnosislist-1.4.0/Rdiagnosislist/R/orphanet.R | 3 Rdiagnosislist-1.4.0/Rdiagnosislist/R/wordnet.R | 85 +- Rdiagnosislist-1.4.0/Rdiagnosislist/data/MANUAL_SYNONYMS.R |only Rdiagnosislist-1.4.0/Rdiagnosislist/data/MANUAL_SYNONYMS.csv |only Rdiagnosislist-1.4.0/Rdiagnosislist/inst/doc/SNOMEDcodelists.R | 9 Rdiagnosislist-1.4.0/Rdiagnosislist/inst/doc/SNOMEDcodelists.Rmd | 14 Rdiagnosislist-1.4.0/Rdiagnosislist/inst/doc/SNOMEDcodelists.html | 320 +++++----- Rdiagnosislist-1.4.0/Rdiagnosislist/inst/doc/convertingAndCreatingCodelists.R | 8 Rdiagnosislist-1.4.0/Rdiagnosislist/inst/doc/convertingAndCreatingCodelists.Rmd | 8 Rdiagnosislist-1.4.0/Rdiagnosislist/inst/doc/convertingAndCreatingCodelists.html | 50 - Rdiagnosislist-1.4.0/Rdiagnosislist/inst/doc/creatingConceptDatabaseForNLP.R | 4 Rdiagnosislist-1.4.0/Rdiagnosislist/inst/doc/creatingConceptDatabaseForNLP.Rmd | 11 Rdiagnosislist-1.4.0/Rdiagnosislist/inst/doc/creatingConceptDatabaseForNLP.html | 57 - Rdiagnosislist-1.4.0/Rdiagnosislist/inst/doc/customHierarchy.R | 4 Rdiagnosislist-1.4.0/Rdiagnosislist/inst/doc/customHierarchy.Rmd | 4 Rdiagnosislist-1.4.0/Rdiagnosislist/inst/doc/customHierarchy.html | 90 +- Rdiagnosislist-1.4.0/Rdiagnosislist/man/HISTORY.Rd | 11 Rdiagnosislist-1.4.0/Rdiagnosislist/man/MANUAL_SYNONYMS.Rd | 2 Rdiagnosislist-1.4.0/Rdiagnosislist/man/READMAPS.Rd | 11 Rdiagnosislist-1.4.0/Rdiagnosislist/man/Rdiagnosislist-package.Rd | 2 Rdiagnosislist-1.4.0/Rdiagnosislist/man/SNOMED_CONCEPT.Rd | 12 Rdiagnosislist-1.4.0/Rdiagnosislist/man/SNOMED_DESCRIPTION.Rd | 12 Rdiagnosislist-1.4.0/Rdiagnosislist/man/SNOMED_EXTENDEDMAP.Rd | 12 Rdiagnosislist-1.4.0/Rdiagnosislist/man/SNOMED_REFSET.Rd | 14 Rdiagnosislist-1.4.0/Rdiagnosislist/man/SNOMED_RELATIONSHIP.Rd | 11 Rdiagnosislist-1.4.0/Rdiagnosislist/man/SNOMED_SIMPLEMAP.Rd | 12 Rdiagnosislist-1.4.0/Rdiagnosislist/man/SNOMEDconcept.Rd | 2 Rdiagnosislist-1.4.0/Rdiagnosislist/man/addComposeLookupToCDB.Rd |only Rdiagnosislist-1.4.0/Rdiagnosislist/man/addWordnet.Rd | 22 Rdiagnosislist-1.4.0/Rdiagnosislist/man/batchDecompose.Rd | 25 Rdiagnosislist-1.4.0/Rdiagnosislist/man/compose.Rd | 25 Rdiagnosislist-1.4.0/Rdiagnosislist/man/createCDB.Rd | 13 Rdiagnosislist-1.4.0/Rdiagnosislist/man/decompose.Rd | 12 Rdiagnosislist-1.4.0/Rdiagnosislist/man/downloadOrphanet.Rd | 10 Rdiagnosislist-1.4.0/Rdiagnosislist/man/downloadWordnet.Rd | 12 Rdiagnosislist-1.4.0/Rdiagnosislist/man/exclude_irrelevant_findings.Rd | 10 Rdiagnosislist-1.4.0/Rdiagnosislist/man/export.Rd | 4 Rdiagnosislist-1.4.0/Rdiagnosislist/man/exportMiADECDB.Rd | 14 Rdiagnosislist-1.4.0/Rdiagnosislist/man/hasAttributes.Rd | 2 Rdiagnosislist-1.4.0/Rdiagnosislist/man/htmlCodelistHierarchy.Rd | 3 Rdiagnosislist-1.4.0/Rdiagnosislist/man/loadREADMAPS.Rd | 2 Rdiagnosislist-1.4.0/Rdiagnosislist/man/sampleSNOMED.Rd | 11 Rdiagnosislist-1.4.0/Rdiagnosislist/tests/testthat/test_SNOMEDcodelist.R | 9 Rdiagnosislist-1.4.0/Rdiagnosislist/tests/testthat/test_cdb.R | 5 Rdiagnosislist-1.4.0/Rdiagnosislist/tests/testthat/test_concepts.R | 19 Rdiagnosislist-1.4.0/Rdiagnosislist/tests/testthat/test_hierarchy.R | 7 Rdiagnosislist-1.4.0/Rdiagnosislist/tests/testthat/test_history.R | 1 Rdiagnosislist-1.4.0/Rdiagnosislist/tests/testthat/test_loadSNOMED.R | 2 Rdiagnosislist-1.4.0/Rdiagnosislist/tests/testthat/test_mapping.R | 8 Rdiagnosislist-1.4.0/Rdiagnosislist/tests/testthat/test_refset.R | 1 Rdiagnosislist-1.4.0/Rdiagnosislist/tests/testthat/test_std_term.R | 1 Rdiagnosislist-1.4.0/Rdiagnosislist/vignettes/SNOMEDcodelists.Rmd | 14 Rdiagnosislist-1.4.0/Rdiagnosislist/vignettes/convertingAndCreatingCodelists.Rmd | 8 Rdiagnosislist-1.4.0/Rdiagnosislist/vignettes/creatingConceptDatabaseForNLP.Rmd | 11 Rdiagnosislist-1.4.0/Rdiagnosislist/vignettes/customHierarchy.Rmd | 4 81 files changed, 1237 insertions(+), 760 deletions(-)
More information about Rdiagnosislist at CRAN
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Title: Miscellaneous Functions for Metabarcoding Analysis
Description: Facilitate the description, transformation, exploration, and reproducibility of metabarcoding analyses. 'MiscMetabar' is mainly built on top of the 'phyloseq', 'dada2' and 'targets' R packages. It helps to build reproducible and robust bioinformatics pipelines in R. 'MiscMetabar' makes ecological analysis of alpha and beta-diversity easier, more reproducible and more powerful by integrating a large number of tools. Important features are described in Taudière A. (2023) <doi:10.21105/joss.06038>.
Author: Adrien Taudiere [aut, cre, cph]
Maintainer: Adrien Taudiere <adrien.taudiere@zaclys.net>
Diff between MiscMetabar versions 0.10.1 dated 2024-10-07 and 0.12.1 dated 2025-01-29
DESCRIPTION | 18 MD5 | 154 +++-- NAMESPACE | 14 NEWS.md | 55 +- R/MiscMetabar-package.R | 5 R/alpha_div_test.R | 8 R/beta_div_test.R | 44 - R/blast.R | 34 - R/controls.R | 3 R/dada_phyloseq.R | 876 +++++++++++++++++++++++++-------- R/deprecated.R | 4 R/funguild.R | 30 - R/krona.R | 25 R/lulu.R | 2 R/miscellanous.R | 89 ++- R/plot_functions.R | 836 +++++++++++++++++++++++++++++-- R/table_functions.R | 3 R/targets_misc.R | 162 +++++- R/vsearch.R | 546 ++++++++++++++++++++ README.md | 10 build/partial.rdb |binary build/vignette.rds |binary inst/doc/MiscMetabar.R | 1 inst/doc/MiscMetabar.Rmd | 1 inst/doc/MiscMetabar.html | 117 ++-- inst/extdata/mini_UNITE_fungi.fasta.gz |only man/accu_plot_balanced_modality.Rd | 2 man/add_blast_info.Rd | 11 man/add_dna_to_phyloseq.Rd | 3 man/add_funguild_info.Rd | 8 man/add_new_taxonomy_pq.Rd | 47 + man/adonis_pq.Rd | 16 man/assign_idtaxa.Rd |only man/assign_sintax.Rd |only man/assign_vsearch_lca.Rd |only man/chimera_detection_vs.Rd | 2 man/clean_pq.Rd | 3 man/cutadapt_remove_primers.Rd | 12 man/filt_taxa_pq.Rd |only man/filter_trim.Rd | 4 man/funguild_assign.Rd | 6 man/get_file_extension.Rd | 3 man/ggscatt_pq.Rd | 2 man/ggvenn_pq.Rd | 19 man/glmutli_pq.Rd | 4 man/hill_curves_pq.Rd |only man/hill_test_rarperm_pq.Rd | 2 man/krona.Rd | 3 man/learn_idtaxa.Rd |only man/list_fastq_files.Rd | 6 man/lulu_pq.Rd | 4 man/multi_biplot_pq.Rd | 4 man/multitax_bar_pq.Rd | 2 man/mumu_pq.Rd | 4 man/no_legend.Rd |only man/plot_complexity_pq.Rd |only man/plot_refseq_extremity_pq.Rd |only man/plot_refseq_pq.Rd |only man/plot_tax_pq.Rd | 2 man/rarefy_sample_count_by_modality.Rd | 2 man/read_pq.Rd | 3 man/ridges_pq.Rd | 5 man/sam_data_matching_names.Rd |only man/search_exact_seq_pq.Rd | 3 man/simplify_taxo.Rd | 29 + man/subsample_fastq.Rd | 5 man/subset_samples_pq.Rd | 3 man/subset_taxa_pq.Rd | 3 man/taxa_only_in_one_level.Rd | 26 man/tbl_sum_samdata.Rd | 2 man/tbl_sum_taxtable.Rd |only man/track_wkflow.Rd | 13 man/treemap_pq.Rd | 2 man/umap_pq.Rd |only man/var_par_rarperm_pq.Rd | 2 man/verify_pq.Rd | 3 man/vs_search_global.Rd | 2 man/vsearch_clustering.Rd | 2 tests/testthat/Rplots.pdf |binary tests/testthat/test_blast.R | 2 tests/testthat/test_deseq2_edgeR.R | 17 tests/testthat/test_figures_taxo.R | 32 - tests/testthat/test_krona.R | 4 tests/testthat/test_vsearch.R | 176 ++++++ vignettes/MiscMetabar.Rmd | 1 85 files changed, 2964 insertions(+), 579 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-09-26 1.2.4
2012-03-01 1.1.1
2011-10-20 1.1.0
Title: Supporting Functions for Packages Maintained by 'YuLab-SMU'
Description: Miscellaneous functions commonly used by 'YuLab-SMU'.
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between yulab.utils versions 0.1.9 dated 2025-01-07 and 0.2.0 dated 2025-01-29
DESCRIPTION | 7 ++++--- MD5 | 6 +++--- NEWS.md | 4 ++++ R/utilities.R | 5 +++-- 4 files changed, 14 insertions(+), 8 deletions(-)
Title: Tools for Summarising and Analysing Soundscape Data
Description: A variety of tools relevant to the analysis
of marine soundscape data. There are tools for downloading AIS (automatic identification system)
data from Marine Cadastre <https://hub.marinecadastre.gov>,
connecting AIS data to GPS coordinates, plotting summaries of various soundscape
measurements, and downloading relevant environmental variables (wind, swell height) from the
National Center for Atmospheric Research data server <https://rda.ucar.edu/datasets/ds084.1/>.
Most tools were developed to work well with output from 'Triton' software, but can be adapted
to work with any similar measurements.
Author: Taiki Sakai [aut, cre],
Anne Simonis [ctb],
Shannon Rankin [ctb],
Megan McKenna [ctb],
Kaitlin Palmer [ctb]
Maintainer: Taiki Sakai <taiki.sakai@noaa.gov>
Diff between PAMscapes versions 0.7.0 dated 2024-09-22 and 0.10.0 dated 2025-01-29
PAMscapes-0.10.0/PAMscapes/DESCRIPTION | 8 PAMscapes-0.10.0/PAMscapes/MD5 | 75 +-- PAMscapes-0.10.0/PAMscapes/NAMESPACE | 27 + PAMscapes-0.10.0/PAMscapes/NEWS.md | 111 ++++ PAMscapes-0.10.0/PAMscapes/R/binDetectionData.R |only PAMscapes-0.10.0/PAMscapes/R/binSoundscapeData.R | 62 ++ PAMscapes-0.10.0/PAMscapes/R/checkSoundscapeInput.R | 185 ++++--- PAMscapes-0.10.0/PAMscapes/R/createOctaveLevel.R | 282 ++++++++++-- PAMscapes-0.10.0/PAMscapes/R/formatEffort.R |only PAMscapes-0.10.0/PAMscapes/R/loadDetectionData.R |only PAMscapes-0.10.0/PAMscapes/R/loadMantaNc.R | 75 +++ PAMscapes-0.10.0/PAMscapes/R/loadMultiscapeData.R |only PAMscapes-0.10.0/PAMscapes/R/loadSoundscapeData.R |only PAMscapes-0.10.0/PAMscapes/R/markNA.R | 4 PAMscapes-0.10.0/PAMscapes/R/matchGFS.R | 45 + PAMscapes-0.10.0/PAMscapes/R/plotAcousticScene.R | 181 ++++++- PAMscapes-0.10.0/PAMscapes/R/plotDetectionBoxplot.R |only PAMscapes-0.10.0/PAMscapes/R/plotHourlyLevel.R | 9 PAMscapes-0.10.0/PAMscapes/R/plotLTSA.R | 62 ++ PAMscapes-0.10.0/PAMscapes/R/plotPSD.R | 235 +++++++--- PAMscapes-0.10.0/PAMscapes/R/plotScaledTimeseries.R | 32 + PAMscapes-0.10.0/PAMscapes/R/plotTimeseries.R | 23 PAMscapes-0.10.0/PAMscapes/R/runSoundscapeExplorer.R | 141 +++++- PAMscapes-0.10.0/PAMscapes/R/utils.R | 18 PAMscapes-0.10.0/PAMscapes/inst/extdata/PSDSmall.csv | 6 PAMscapes-0.10.0/PAMscapes/man/binDetectionData.Rd |only PAMscapes-0.10.0/PAMscapes/man/binSoundscapeData.Rd | 20 PAMscapes-0.10.0/PAMscapes/man/checkSoundscapeInput.Rd | 23 PAMscapes-0.10.0/PAMscapes/man/createOctaveLevel.Rd | 100 ++-- PAMscapes-0.10.0/PAMscapes/man/formatEffort.Rd |only PAMscapes-0.10.0/PAMscapes/man/loadDetectionData.Rd |only PAMscapes-0.10.0/PAMscapes/man/loadMantaNc.Rd | 78 +-- PAMscapes-0.10.0/PAMscapes/man/loadMultiscapeData.Rd |only PAMscapes-0.10.0/PAMscapes/man/loadSoundscapeData.Rd |only PAMscapes-0.10.0/PAMscapes/man/markNA.Rd | 2 PAMscapes-0.10.0/PAMscapes/man/matchGFS.Rd | 22 PAMscapes-0.10.0/PAMscapes/man/plotAcousticScene.Rd | 178 ++++--- PAMscapes-0.10.0/PAMscapes/man/plotDetectionBoxplot.Rd |only PAMscapes-0.10.0/PAMscapes/man/plotLTSA.Rd | 162 +++--- PAMscapes-0.10.0/PAMscapes/man/plotPSD.Rd | 13 PAMscapes-0.10.0/PAMscapes/man/plotScaledTimeseries.Rd | 185 ++++--- PAMscapes-0.10.0/PAMscapes/man/plotTimeseries.Rd | 134 ++--- PAMscapes-0.10.0/PAMscapes/man/runSoundscapeExplorer.Rd | 60 +- PAMscapes-0.10.0/PAMscapes/tests/testthat/test-detection.R |only PAMscapes-0.10.0/PAMscapes/tests/testthat/test-soundscape.R |only PAMscapes-0.7.0/PAMscapes/tests/testthat/test-dataprep.R |only 46 files changed, 1812 insertions(+), 746 deletions(-)
Title: Project Environments
Description: A dependency management toolkit for R. Using 'renv', you can create
and manage project-local R libraries, save the state of these libraries to
a 'lockfile', and later restore your library as required. Together, these
tools can help make your projects more isolated, portable, and reproducible.
Author: Kevin Ushey [aut, cre] ,
Hadley Wickham [aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between renv versions 1.0.11 dated 2024-10-12 and 1.1.0 dated 2025-01-29
renv-1.0.11/renv/inst/repos/src/contrib/renv_1.0.11.tar.gz |only renv-1.1.0/renv/DESCRIPTION | 6 renv-1.1.0/renv/LICENSE | 2 renv-1.1.0/renv/MD5 | 200 ++++++------- renv-1.1.0/renv/NAMESPACE | 1 renv-1.1.0/renv/NEWS.md | 85 +++++ renv-1.1.0/renv/R/aaa.R | 19 + renv-1.1.0/renv/R/backports.R | 19 + renv-1.1.0/renv/R/bioconductor.R | 1 renv-1.1.0/renv/R/bootstrap.R | 21 - renv-1.1.0/renv/R/config.R | 23 + renv-1.1.0/renv/R/dependencies.R | 162 ++++++---- renv-1.1.0/renv/R/download.R | 22 - renv-1.1.0/renv/R/embed.R | 4 renv-1.1.0/renv/R/files.R | 15 renv-1.1.0/renv/R/hash.R | 77 +++-- renv-1.1.0/renv/R/hydrate.R | 15 renv-1.1.0/renv/R/imports.R | 2 renv-1.1.0/renv/R/init.R | 4 renv-1.1.0/renv/R/install.R | 15 renv-1.1.0/renv/R/job.R |only renv-1.1.0/renv/R/json-read.R | 167 +++++----- renv-1.1.0/renv/R/load.R | 16 - renv-1.1.0/renv/R/lockfile-read.R | 25 + renv-1.1.0/renv/R/lockfile-write.R | 3 renv-1.1.0/renv/R/lockfile.R | 1 renv-1.1.0/renv/R/log.R | 20 - renv-1.1.0/renv/R/pak.R | 68 +++- renv-1.1.0/renv/R/path.R | 2 renv-1.1.0/renv/R/ppm.R | 2 renv-1.1.0/renv/R/project.R | 26 + renv-1.1.0/renv/R/python.R | 2 renv-1.1.0/renv/R/record.R | 2 renv-1.1.0/renv/R/records.R | 26 + renv-1.1.0/renv/R/remotes.R | 46 +- renv-1.1.0/renv/R/renvignore.R | 17 - renv-1.1.0/renv/R/retrieve.R | 63 ++-- renv-1.1.0/renv/R/revdeps.R |only renv-1.1.0/renv/R/robocopy.R | 2 renv-1.1.0/renv/R/run.R | 47 ++- renv-1.1.0/renv/R/sandbox.R | 19 - renv-1.1.0/renv/R/settings.R | 4 renv-1.1.0/renv/R/snapshot.R | 120 ++++++- renv-1.1.0/renv/R/task.R | 2 renv-1.1.0/renv/R/upgrade.R | 5 renv-1.1.0/renv/R/use-python.R | 2 renv-1.1.0/renv/R/use.R | 39 ++ renv-1.1.0/renv/R/utils.R | 11 renv-1.1.0/renv/R/zzz.R | 23 + renv-1.1.0/renv/README.md | 2 renv-1.1.0/renv/build/vignette.rds |binary renv-1.1.0/renv/inst/doc/ci.Rmd | 4 renv-1.1.0/renv/inst/doc/ci.html | 6 renv-1.1.0/renv/inst/doc/docker.html | 2 renv-1.1.0/renv/inst/doc/faq.R | 8 renv-1.1.0/renv/inst/doc/faq.html | 2 renv-1.1.0/renv/inst/doc/package-install.R | 54 +-- renv-1.1.0/renv/inst/doc/package-install.html | 4 renv-1.1.0/renv/inst/doc/package-sources.R | 16 - renv-1.1.0/renv/inst/doc/package-sources.html | 2 renv-1.1.0/renv/inst/doc/packrat.html | 2 renv-1.1.0/renv/inst/doc/profiles.R | 2 renv-1.1.0/renv/inst/doc/profiles.html | 2 renv-1.1.0/renv/inst/doc/renv.R | 4 renv-1.1.0/renv/inst/doc/renv.html | 7 renv-1.1.0/renv/inst/doc/rsconnect.html | 2 renv-1.1.0/renv/inst/repos/src/contrib/PACKAGES | 4 renv-1.1.0/renv/inst/repos/src/contrib/PACKAGES.gz |binary renv-1.1.0/renv/inst/repos/src/contrib/PACKAGES.rds |binary renv-1.1.0/renv/inst/repos/src/contrib/renv_1.1.0.tar.gz |only renv-1.1.0/renv/inst/resources/activate.R | 196 ++++++------ renv-1.1.0/renv/man/dependencies.Rd | 38 -- renv-1.1.0/renv/man/embed.Rd | 6 renv-1.1.0/renv/man/install.Rd | 6 renv-1.1.0/renv/man/lockfiles.Rd | 2 renv-1.1.0/renv/man/run.Rd | 6 renv-1.1.0/renv/man/settings.Rd | 4 renv-1.1.0/renv/man/snapshot.Rd | 13 renv-1.1.0/renv/tests/testthat/_snaps/snapshot.md | 133 ++++++++ renv-1.1.0/renv/tests/testthat/helper-aaa.R | 1 renv-1.1.0/renv/tests/testthat/helper-setup.R | 6 renv-1.1.0/renv/tests/testthat/helper-snapshot.R | 1 renv-1.1.0/renv/tests/testthat/packages/future |only renv-1.1.0/renv/tests/testthat/packages/today |only renv-1.1.0/renv/tests/testthat/resources/knitr-spin.R |only renv-1.1.0/renv/tests/testthat/test-bioconductor.R | 19 - renv-1.1.0/renv/tests/testthat/test-bootstrap.R | 1 renv-1.1.0/renv/tests/testthat/test-config.R | 50 +++ renv-1.1.0/renv/tests/testthat/test-dependencies.R | 47 ++- renv-1.1.0/renv/tests/testthat/test-envvar.R | 1 renv-1.1.0/renv/tests/testthat/test-files.R | 1 renv-1.1.0/renv/tests/testthat/test-init.R | 28 + renv-1.1.0/renv/tests/testthat/test-install.R | 29 + renv-1.1.0/renv/tests/testthat/test-job.R |only renv-1.1.0/renv/tests/testthat/test-json.R | 2 renv-1.1.0/renv/tests/testthat/test-lockfile-validate.R | 10 renv-1.1.0/renv/tests/testthat/test-lockfile.R | 21 - renv-1.1.0/renv/tests/testthat/test-pak.R |only renv-1.1.0/renv/tests/testthat/test-paths.R | 4 renv-1.1.0/renv/tests/testthat/test-renvignore.R | 12 renv-1.1.0/renv/tests/testthat/test-repos.R | 2 renv-1.1.0/renv/tests/testthat/test-run.R |only renv-1.1.0/renv/tests/testthat/test-snapshot.R | 60 +++ renv-1.1.0/renv/tests/testthat/test-use.R | 8 renv-1.1.0/renv/tests/testthat/test-vendor.R | 4 renv-1.1.0/renv/vignettes/ci.Rmd | 4 106 files changed, 1576 insertions(+), 715 deletions(-)
Title: Bayesian Longitudinal Regularized Quantile Mixed Model
Description: In longitudinal studies, the same subjects are measured repeatedly over time, leading to correlations among the repeated measurements. Properly accounting for the intra-cluster correlations in the presence of data heterogeneity and long tailed distributions of the disease phenotype is challenging, especially in the context of high dimensional regressions. In this package, we developed a Bayesian quantile mixed effects model with spike- and -slab priors to dissect important gene - environment interactions under longitudinal genomics studies. An efficient Gibbs sampler has been developed to facilitate fast computation. The Markov chain Monte Carlo algorithms of the proposed and alternative methods are efficiently implemented in 'C++'. The development of this software package and the associated statistical methods have been partially supported by an Innovative Research Award from Johnson Cancer Research Center, Kansas State University.
Author: Kun Fan [aut, cre],
Cen Wu [aut]
Maintainer: Kun Fan <kfan@ksu.edu>
Diff between mixedBayes versions 0.1.4 dated 2025-01-07 and 0.1.4.1 dated 2025-01-29
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- README.md | 12 +++++++++--- 3 files changed, 16 insertions(+), 10 deletions(-)
Title: Utility Functions for Forest Inventory Estimation and Analysis
Description: A set of tools for data wrangling, spatial data analysis,
statistical modeling (including direct, model-assisted, photo-based, and
small area tools), and USDA Forest Service data base tools. These tools are
aimed to help Foresters, Analysts, and Scientists extract and perform
analyses on USDA Forest Service data.
Author: Tracey Frescino [aut],
Chris Toney [aut],
Grayson White [aut, cre],
Joshua Yamamoto [aut]
Maintainer: Grayson White <graysonwhite13@gmail.com>
Diff between FIESTAutils versions 1.2.3 dated 2024-05-15 and 1.3.0 dated 2025-01-29
FIESTAutils-1.2.3/FIESTAutils/man/Rcpp_CmbTable-class.Rd |only FIESTAutils-1.2.3/FIESTAutils/man/Rcpp_RunningStats-class.Rd |only FIESTAutils-1.3.0/FIESTAutils/DESCRIPTION | 10 FIESTAutils-1.3.0/FIESTAutils/MD5 | 91 FIESTAutils-1.3.0/FIESTAutils/NAMESPACE | 16 FIESTAutils-1.3.0/FIESTAutils/R/DBinternal.R | 319 +- FIESTAutils-1.3.0/FIESTAutils/R/FIESTAutils-package.R | 46 FIESTAutils-1.3.0/FIESTAutils/R/MAest.pbar.R | 2 FIESTAutils-1.3.0/FIESTAutils/R/SAest.pbar.R | 1171 ++++++----- FIESTAutils-1.3.0/FIESTAutils/R/check.pltcnt.R |only FIESTAutils-1.3.0/FIESTAutils/R/checks.R | 303 +- FIESTAutils-1.3.0/FIESTAutils/R/cool_functions.R | 61 FIESTAutils-1.3.0/FIESTAutils/R/datExportData.R | 66 FIESTAutils-1.3.0/FIESTAutils/R/datSum_options.R |only FIESTAutils-1.3.0/FIESTAutils/R/database_options.R |only FIESTAutils-1.3.0/FIESTAutils/R/getEvalid.R |only FIESTAutils-1.3.0/FIESTAutils/R/getadjfactorVOL.R | 35 FIESTAutils-1.3.0/FIESTAutils/R/getpse.R |only FIESTAutils-1.3.0/FIESTAutils/R/groupClasses.R |only FIESTAutils-1.3.0/FIESTAutils/R/groupStrata.R | 44 FIESTAutils-1.3.0/FIESTAutils/R/multest_options.R | 14 FIESTAutils-1.3.0/FIESTAutils/R/pcheck.functions.R | 671 +++++- FIESTAutils-1.3.0/FIESTAutils/R/popFilters.R |only FIESTAutils-1.3.0/FIESTAutils/R/popTabchk.R | 24 FIESTAutils-1.3.0/FIESTAutils/R/popTableIDs.R |only FIESTAutils-1.3.0/FIESTAutils/R/popTables.R |only FIESTAutils-1.3.0/FIESTAutils/R/query_functions.R | 119 - FIESTAutils-1.3.0/FIESTAutils/R/raster_analysis.R | 251 ++ FIESTAutils-1.3.0/FIESTAutils/R/raster_functions.R | 5 FIESTAutils-1.3.0/FIESTAutils/R/spatial_functions.R | 94 FIESTAutils-1.3.0/FIESTAutils/R/strat_collapse.R | 119 - FIESTAutils-1.3.0/FIESTAutils/R/tableIDs.R |only FIESTAutils-1.3.0/FIESTAutils/R/table_functions.R | 257 +- FIESTAutils-1.3.0/FIESTAutils/R/table_options.R | 26 FIESTAutils-1.3.0/FIESTAutils/R/write2csv.R | 32 FIESTAutils-1.3.0/FIESTAutils/R/write2postgresql.R |only FIESTAutils-1.3.0/FIESTAutils/R/write2sqlite.R | 47 FIESTAutils-1.3.0/FIESTAutils/data/ref_codes.rda |binary FIESTAutils-1.3.0/FIESTAutils/data/ref_estimators.rda |only FIESTAutils-1.3.0/FIESTAutils/data/ref_titles.rda |binary FIESTAutils-1.3.0/FIESTAutils/man/checks_desc.Rd | 6 FIESTAutils-1.3.0/FIESTAutils/man/datExportData.Rd | 8 FIESTAutils-1.3.0/FIESTAutils/man/datSum_options.Rd |only FIESTAutils-1.3.0/FIESTAutils/man/database_options.Rd |only FIESTAutils-1.3.0/FIESTAutils/man/estimation_desc.Rd | 16 FIESTAutils-1.3.0/FIESTAutils/man/internal_desc.Rd | 102 FIESTAutils-1.3.0/FIESTAutils/man/multest_options.Rd | 6 FIESTAutils-1.3.0/FIESTAutils/man/pcheck_desc.Rd | 14 FIESTAutils-1.3.0/FIESTAutils/man/popFilters.Rd |only FIESTAutils-1.3.0/FIESTAutils/man/popTableIDs.Rd |only FIESTAutils-1.3.0/FIESTAutils/man/popTables.Rd |only FIESTAutils-1.3.0/FIESTAutils/man/raster_desc.Rd | 22 FIESTAutils-1.3.0/FIESTAutils/man/ref_estimators.Rd |only FIESTAutils-1.3.0/FIESTAutils/man/spatial_desc.Rd | 2 FIESTAutils-1.3.0/FIESTAutils/man/tableIDs.Rd |only FIESTAutils-1.3.0/FIESTAutils/man/table_options.Rd | 6 FIESTAutils-1.3.0/FIESTAutils/man/write2_desc.Rd | 19 57 files changed, 2735 insertions(+), 1289 deletions(-)