Title: Tensors and Neural Networks with 'GPU' Acceleration
Description: Provides functionality to define and train neural networks similar to
'PyTorch' by Paszke et al (2019) <doi:10.48550/arXiv.1912.01703> but written entirely in R
using the 'libtorch' library. Also supports low-level tensor operations and
'GPU' acceleration.
Author: Daniel Falbel [aut, cre, cph],
Javier Luraschi [aut],
Dmitriy Selivanov [ctb],
Athos Damiani [ctb],
Christophe Regouby [ctb],
Krzysztof Joachimiak [ctb],
Hamada S. Badr [ctb],
Sebastian Fischer [ctb],
Maximilian Pichler [ctb],
RStudio [cph]
Maintainer: Daniel Falbel <daniel@rstudio.com>
Diff between torch versions 0.13.0 dated 2024-05-21 and 0.14.0 dated 2025-01-30
torch-0.13.0/torch/tools/torchgen/inst/declaration/Declarations-2.0.1.yaml |only torch-0.13.0/torch/vignettes/model.pt |only torch-0.13.0/torch/vignettes/tensor.pt |only torch-0.14.0/torch/DESCRIPTION | 56 torch-0.14.0/torch/MD5 | 280 torch-0.14.0/torch/NAMESPACE | 12 torch-0.14.0/torch/NEWS.md | 21 torch-0.14.0/torch/R/RcppExports.R | 1552 ++- torch-0.14.0/torch/R/autograd.R | 2 torch-0.14.0/torch/R/compilation_unit.R | 2 torch-0.14.0/torch/R/conditions.R | 14 torch-0.14.0/torch/R/gen-method.R | 153 torch-0.14.0/torch/R/gen-namespace-docs.R | 26 torch-0.14.0/torch/R/gen-namespace.R | 2493 ++++ torch-0.14.0/torch/R/generator.R | 4 torch-0.14.0/torch/R/ignite.R |only torch-0.14.0/torch/R/indexing.R | 2 torch-0.14.0/torch/R/install.R | 16 torch-0.14.0/torch/R/lantern_sync.R | 8 torch-0.14.0/torch/R/linalg.R | 10 torch-0.14.0/torch/R/nn.R | 21 torch-0.14.0/torch/R/nnf-activation.R | 12 torch-0.14.0/torch/R/optim-adadelta.R | 1 torch-0.14.0/torch/R/optim-adagrad.R | 43 torch-0.14.0/torch/R/optim-adam.R | 44 torch-0.14.0/torch/R/optim-adamw.R | 73 torch-0.14.0/torch/R/optim-asgd.R | 1 torch-0.14.0/torch/R/optim-lbfgs.R | 21 torch-0.14.0/torch/R/optim-lr_scheduler.R | 2 torch-0.14.0/torch/R/optim-rmsprop.R | 35 torch-0.14.0/torch/R/optim-sgd.R | 39 torch-0.14.0/torch/R/optim.R | 66 torch-0.14.0/torch/R/package.R | 4 torch-0.14.0/torch/R/positron.R |only torch-0.14.0/torch/R/save.R | 9 torch-0.14.0/torch/R/script_module.R | 73 torch-0.14.0/torch/R/tensor.R | 7 torch-0.14.0/torch/R/trace.R | 136 torch-0.14.0/torch/R/type-info.R | 14 torch-0.14.0/torch/R/utils.R | 6 torch-0.14.0/torch/build/partial.rdb |binary torch-0.14.0/torch/build/vignette.rds |binary torch-0.14.0/torch/configure.win | 2 torch-0.14.0/torch/inst/doc/distributions.R | 2 torch-0.14.0/torch/inst/doc/distributions.html | 97 torch-0.14.0/torch/inst/doc/extending-autograd.R | 2 torch-0.14.0/torch/inst/doc/extending-autograd.html | 5 torch-0.14.0/torch/inst/doc/indexing.R | 2 torch-0.14.0/torch/inst/doc/indexing.Rmd | 2 torch-0.14.0/torch/inst/doc/indexing.html | 162 torch-0.14.0/torch/inst/doc/installation.R | 2 torch-0.14.0/torch/inst/doc/installation.Rmd | 8 torch-0.14.0/torch/inst/doc/installation.html | 8 torch-0.14.0/torch/inst/doc/loading-data.R | 2 torch-0.14.0/torch/inst/doc/loading-data.html | 75 torch-0.14.0/torch/inst/doc/python-to-r.R | 2 torch-0.14.0/torch/inst/doc/serialization.R | 2 torch-0.14.0/torch/inst/doc/serialization.html | 23 torch-0.14.0/torch/inst/doc/tensor-creation.R | 2 torch-0.14.0/torch/inst/doc/tensor-creation.html | 57 torch-0.14.0/torch/inst/doc/torchscript.R | 2 torch-0.14.0/torch/inst/doc/torchscript.Rmd | 18 torch-0.14.0/torch/inst/doc/torchscript.html | 132 torch-0.14.0/torch/inst/doc/using-autograd.R | 2 torch-0.14.0/torch/inst/doc/using-autograd.html | 87 torch-0.14.0/torch/inst/include/lantern/lantern.h | 2144 ++-- torch-0.14.0/torch/inst/include/lantern/types.h | 3 torch-0.14.0/torch/inst/include/torch_deleters.h | 5 torch-0.14.0/torch/inst/include/torch_types.h | 58 torch-0.14.0/torch/inst/include/utils.h | 23 torch-0.14.0/torch/inst/po |only torch-0.14.0/torch/man/OptimizerIgnite.Rd |only torch-0.14.0/torch/man/jit_serialize.Rd |only torch-0.14.0/torch/man/jit_trace.Rd | 16 torch-0.14.0/torch/man/jit_trace_module.Rd | 11 torch-0.14.0/torch/man/jit_unserialize.Rd |only torch-0.14.0/torch/man/linalg_cholesky.Rd | 10 torch-0.14.0/torch/man/linalg_cholesky_ex.Rd | 10 torch-0.14.0/torch/man/linalg_det.Rd | 12 torch-0.14.0/torch/man/linalg_eig.Rd | 10 torch-0.14.0/torch/man/linalg_eigh.Rd | 12 torch-0.14.0/torch/man/linalg_eigvals.Rd | 10 torch-0.14.0/torch/man/linalg_eigvalsh.Rd | 10 torch-0.14.0/torch/man/linalg_householder_product.Rd | 12 torch-0.14.0/torch/man/linalg_inv.Rd | 10 torch-0.14.0/torch/man/linalg_inv_ex.Rd | 10 torch-0.14.0/torch/man/linalg_lstsq.Rd | 12 torch-0.14.0/torch/man/linalg_matrix_norm.Rd | 14 torch-0.14.0/torch/man/linalg_matrix_power.Rd | 12 torch-0.14.0/torch/man/linalg_matrix_rank.Rd | 12 torch-0.14.0/torch/man/linalg_multi_dot.Rd | 12 torch-0.14.0/torch/man/linalg_norm.Rd | 14 torch-0.14.0/torch/man/linalg_pinv.Rd | 12 torch-0.14.0/torch/man/linalg_qr.Rd | 12 torch-0.14.0/torch/man/linalg_slogdet.Rd | 12 torch-0.14.0/torch/man/linalg_solve.Rd | 10 torch-0.14.0/torch/man/linalg_solve_triangular.Rd | 10 torch-0.14.0/torch/man/linalg_svd.Rd | 10 torch-0.14.0/torch/man/linalg_svdvals.Rd | 10 torch-0.14.0/torch/man/linalg_tensorinv.Rd | 12 torch-0.14.0/torch/man/linalg_tensorsolve.Rd | 14 torch-0.14.0/torch/man/linalg_vector_norm.Rd | 14 torch-0.14.0/torch/man/optim_ignite_adagrad.Rd |only torch-0.14.0/torch/man/optim_ignite_adam.Rd |only torch-0.14.0/torch/man/optim_ignite_adamw.Rd |only torch-0.14.0/torch/man/optim_ignite_rmsprop.Rd |only torch-0.14.0/torch/man/optim_ignite_sgd.Rd |only torch-0.14.0/torch/man/optim_lbfgs.Rd | 6 torch-0.14.0/torch/man/optim_required.Rd | 2 torch-0.14.0/torch/man/optimizer_ignite.Rd |only torch-0.14.0/torch/man/torch_can_cast.Rd | 4 torch-0.14.0/torch/man/torch_take_along_dim.Rd |only torch-0.14.0/torch/po |only torch-0.14.0/torch/src/Makevars.in | 4 torch-0.14.0/torch/src/RcppExports.cpp | 5165 +++++++--- torch-0.14.0/torch/src/autograd.cpp | 24 torch-0.14.0/torch/src/codegen.cpp | 34 torch-0.14.0/torch/src/gen-namespace.cpp | 1768 ++- torch-0.14.0/torch/src/ignite.cpp |only torch-0.14.0/torch/src/indexing.cpp | 58 torch-0.14.0/torch/src/script_module.cpp | 21 torch-0.14.0/torch/src/tensor.cpp | 5 torch-0.14.0/torch/src/torch_api.cpp | 114 torch-0.14.0/torch/src/trace.cpp | 8 torch-0.14.0/torch/tests/testthat/_snaps/script_module.md | 28 torch-0.14.0/torch/tests/testthat/assets/linear.pt |binary torch-0.14.0/torch/tests/testthat/helper-ignite.R |only torch-0.14.0/torch/tests/testthat/helper-optim.R | 22 torch-0.14.0/torch/tests/testthat/test-cuda.R | 7 torch-0.14.0/torch/tests/testthat/test-distributions-constraints.R | 2 torch-0.14.0/torch/tests/testthat/test-ignite.R |only torch-0.14.0/torch/tests/testthat/test-indexing.R | 46 torch-0.14.0/torch/tests/testthat/test-jit-ops.R | 14 torch-0.14.0/torch/tests/testthat/test-message-translations.R |only torch-0.14.0/torch/tests/testthat/test-nn-multihead-attention.R | 8 torch-0.14.0/torch/tests/testthat/test-nn-normalization.R | 2 torch-0.14.0/torch/tests/testthat/test-nn-rnn.R | 2 torch-0.14.0/torch/tests/testthat/test-nn.R | 5 torch-0.14.0/torch/tests/testthat/test-optim-sgd.R | 36 torch-0.14.0/torch/tests/testthat/test-save.R | 7 torch-0.14.0/torch/tests/testthat/test-script_module.R | 8 torch-0.14.0/torch/tests/testthat/test-trace.R | 52 torch-0.14.0/torch/tests/testthat/test-utils-data-dataloader.R | 4 torch-0.14.0/torch/tests/testthat/tracedmodule.pt |binary torch-0.14.0/torch/tools/buildlantern.R | 6 torch-0.14.0/torch/tools/torchgen/R/cpp.R | 103 torch-0.14.0/torch/tools/torchgen/R/r.R | 16 torch-0.14.0/torch/tools/torchgen/R/utils.R | 2 torch-0.14.0/torch/tools/torchgen/inst/declaration/Declarations-2.5.1.yaml |only torch-0.14.0/torch/vignettes/indexing.Rmd | 2 torch-0.14.0/torch/vignettes/installation.Rmd | 8 torch-0.14.0/torch/vignettes/torchscript.Rmd | 18 152 files changed, 12182 insertions(+), 3941 deletions(-)
Title: Interact with Large Language Models in 'RStudio'
Description: Enables user interactivity with large-language models ('LLM') inside
the 'RStudio' integrated development environment (IDE). The user can
interact with the model using the 'shiny' app included in this package, or
directly in the 'R' console. It comes with back-ends for 'OpenAI', 'GitHub'
'Copilot', and 'LlamaGPT'.
Author: Edgar Ruiz [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Edgar Ruiz <edgar@posit.co>
Diff between chattr versions 0.2.0 dated 2024-07-29 and 0.2.1 dated 2025-01-30
DESCRIPTION | 10 - MD5 | 26 +-- NEWS.md | 4 R/chattr-use.R | 1 inst/doc/backend-databricks.html | 2 inst/doc/backend-llamagpt.R | 2 inst/doc/backend-llamagpt.html | 2 inst/doc/copilot-chat.html | 2 inst/doc/openai-gpt.html | 2 inst/doc/other-interfaces.html | 2 inst/doc/prompt_defaults.html | 206 +++++++++++++++---------------- tests/testthat/_snaps/chattr-use.md | 7 + tests/testthat/test-backend-databricks.R | 2 tests/testthat/test-chattr-use.R | 18 ++ 14 files changed, 158 insertions(+), 128 deletions(-)
Title: Tidy Temporal Data Frames and Tools
Description: Provides a 'tbl_ts' class (the 'tsibble') for
temporal data in an data- and model-oriented format. The 'tsibble'
provides tools to easily manipulate and analyse temporal data, such as
filling in time gaps and aggregating over calendar periods.
Author: Earo Wang [aut, cre] ,
Di Cook [aut, ths] ,
Rob Hyndman [aut, ths] ,
Mitchell O'Hara-Wild [aut] ,
Tyler Smith [ctb],
Wil Davis [ctb]
Maintainer: Earo Wang <earo.wang@gmail.com>
Diff between tsibble versions 1.1.5 dated 2024-06-27 and 1.1.6 dated 2025-01-30
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ inst/doc/faq.html | 2 +- inst/doc/implicit-na.R | 10 +++++----- inst/doc/implicit-na.html | 4 ++-- inst/doc/intro-tsibble.html | 2 +- tests/testthat/test-tsibble.R | 1 + 7 files changed, 20 insertions(+), 19 deletions(-)
Title: 'ShinyItemAnalysis' Modules Development Toolkit
Description: A comprehensive suite of functions designed for constructing
and managing 'ShinyItemAnalysis' modules, supplemented with detailed
guides, ready-to-use templates, linters, and tests. This package
allows developers to seamlessly create and integrate one or more
modules into their existing packages or to start a new module project
from scratch.
Author: Jan Netik [cre, aut] ,
Patricia Martinkova [aut]
Maintainer: Jan Netik <netik@cs.cas.cz>
Diff between SIAtools versions 0.1.1 dated 2024-06-20 and 0.1.2 dated 2025-01-30
DESCRIPTION | 8 ++++---- MD5 | 29 +++++++++++++++-------------- NAMESPACE | 5 +++++ NEWS.md | 13 +++++++++++++ R/create_module_project.R | 4 ++-- R/preview_module.R | 29 +++++++++++++++++++++-------- R/sysdata.rda |binary R/utils.R | 36 +++++++++++++++++++++++++++++++++--- build/vignette.rds |binary inst/WORDLIST | 4 +--- inst/doc/getting_started.R | 6 +++--- inst/doc/getting_started.html | 5 +---- inst/doc/imports.R | 14 +++++++------- inst/doc/imports.html | 3 +-- man/sm_list_available.Rd |only tests/testthat/test-add_module.R | 5 +++-- 16 files changed, 109 insertions(+), 52 deletions(-)
Title: Association Among Disease Counts and Socio-Environmental Factors
Description: Estimation of association between disease or death counts (e.g. COVID-19) and socio-environmental risk factors using a zero-inflated Bayesian spatiotemporal model. Non-spatiotemporal models and/or models without zero-inflation are also included for comparison. Functions to produce corresponding maps are also included. See Chakraborty et al. (2022) <doi:10.1007/s13253-022-00487-1> for more details on the method.
Author: Suman Majumder [cre, aut, cph],
Yoon-Bae Jun [aut, cph],
Sounak Chakraborty [ctb],
Chae-Young Lim [ctb],
Tanujit Dey [ctb]
Maintainer: Suman Majumder <smajumd2@gmail.com>
Diff between BSTZINB versions 1.0.0 dated 2024-10-31 and 2.0.0 dated 2025-01-30
DESCRIPTION | 16 - MD5 | 54 ++-- NAMESPACE | 84 +++--- NEWS.md | 16 - build/vignette.rds |binary inst/doc/BSTZINB_vignette.R | 14 - inst/doc/BSTZINB_vignette.Rmd | 12 inst/doc/BSTZINB_vignette.html | 490 +++++++++++++++++-------------------- man/BNB.Rd | 88 +++--- man/BSTNB.Rd | 88 +++--- man/BSTZINB.Rd | 92 +++--- man/BZINB.Rd | 88 +++--- man/ResultTableSummary.Rd | 64 ++-- man/ResultTableSummary2.Rd | 90 +++--- man/TimetrendCurve.Rd | 90 +++--- man/USAcities.Rd | 38 +- man/USDmapCount.Rd | 76 ++--- man/compute_NB_DIC.Rd | 76 ++--- man/compute_ZINB_DIC.Rd | 76 ++--- man/conv.test.Rd | 72 ++--- man/county.adjacency.Rd | 38 +- man/get_adj_mat.Rd | 58 ++-- man/qRankPar.Rd | 92 +++--- man/qRankParTop.Rd | 92 +++--- man/simdat.Rd | 38 +- tests/testthat.R | 24 - tests/testthat/_snaps/mainfuncs.md | 42 +-- vignettes/BSTZINB_vignette.Rmd | 12 28 files changed, 1001 insertions(+), 1019 deletions(-)
Title: Enhancing the 'parallel' Package
Description: Utility functions that enhance the 'parallel' package and support the built-in parallel backends of the 'future' package. For example, availableCores() gives the number of CPU cores available to your R process as given by the operating system, 'cgroups' and Linux containers, R options, and environment variables, including those set by job schedulers on high-performance compute clusters. If none is set, it will fall back to parallel::detectCores(). Another example is makeClusterPSOCK(), which is backward compatible with parallel::makePSOCKcluster() while doing a better job in setting up remote cluster workers without the need for configuring the firewall to do port-forwarding to your local computer.
Author: Henrik Bengtsson [aut, cre, cph]
,
Mike Cheng [ctb]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between parallelly versions 1.41.0 dated 2024-12-18 and 1.42.0 dated 2025-01-30
DESCRIPTION | 6 ++-- MD5 | 38 ++++++++++++++++-------------- NEWS.md | 25 +++++++++++++++++++ R/availableCores.R | 13 +++++++--- R/availableWorkers.R | 3 +- R/cgroups.R | 24 ++++-------------- R/isNodeAlive.R | 5 ++- R/killNode.R | 5 ++- R/makeNodePSOCK.R | 4 +-- R/utils,cluster.R | 2 - inst/doc/parallelly-15-cloud-workers.html | 2 - inst/doc/parallelly-15-cloud-workers.md | 2 - inst/test-data/mixed-cgroups |only man/availableCores.Rd | 3 +- man/availableWorkers.Rd | 3 +- man/makeClusterPSOCK.Rd | 4 +-- tests/availableCores.R | 7 +++-- tests/cgroups.R | 2 - vignettes/parallelly-15-cloud-workers.md | 2 - 19 files changed, 89 insertions(+), 61 deletions(-)
Title: Bayesian Structure and Causal Learning of Gaussian Directed
Graphs
Description: A collection of functions for structure learning of causal networks and estimation of joint causal effects from observational Gaussian data. Main algorithm consists of a Markov chain Monte Carlo scheme for posterior inference of causal structures, parameters and causal effects between variables.
References:
F. Castelletti and A. Mascaro (2021) <doi:10.1007/s10260-021-00579-1>,
F. Castelletti and A. Mascaro (2022) <doi:10.48550/arXiv.2201.12003>.
Author: Federico Castelletti [aut],
Alessandro Mascaro [aut, cre, cph]
Maintainer: Alessandro Mascaro <alessandro.mascaro@upf.edu>
Diff between BCDAG versions 1.1.1 dated 2024-06-14 and 1.1.2 dated 2025-01-30
DESCRIPTION | 8 MD5 | 20 +- NEWS.md | 3 R/learn_DAG.R | 16 + build/vignette.rds |binary inst/doc/bcdag_generatedata.html | 4 inst/doc/bcdag_getfamily.R | 16 - inst/doc/bcdag_getfamily.html | 340 +++++++++++++++++++-------------------- inst/doc/bcdag_learnDAG.R | 24 +- inst/doc/bcdag_learnDAG.html | 280 ++++++++++++++++---------------- man/learn_DAG.Rd | 16 + 11 files changed, 379 insertions(+), 348 deletions(-)
Title: Visualization of Design of Experiments from the 'agricolae'
Package
Description: Visualization of Design of Experiments from the 'agricolae' package with 'ggplot2' framework
The user provides an experiment design from the 'agricolae' package, calls the corresponding function and will receive a
visualization with 'ggplot2' based functions that are specific for each design. As there are many different designs, each design is tested on its type.
The output can be modified with standard 'ggplot2' commands or with other packages with 'ggplot2' function extensions.
Author: Jens Harbers [aut, cre]
Maintainer: Jens Harbers <jensharbers@gmail.com>
Diff between agricolaeplotr versions 0.6.0 dated 2025-01-22 and 0.6.1 dated 2025-01-30
DESCRIPTION | 6 MD5 | 14 - NAMESPACE | 1 NEWS.md | 4 R/hello.R | 564 ++++++++++++++++++++++++----------------------- inst/doc/FielDHub.html | 4 inst/doc/vignette.html | 4 tests/testthat/testall.R | 191 ++++++++------- 8 files changed, 410 insertions(+), 378 deletions(-)
More information about agricolaeplotr at CRAN
Permanent link
Title: The Free Group
Description: The free group in R; juxtaposition is represented by a
plus. Includes inversion, multiplication by a scalar,
group-theoretic power operation, and Tietze forms. To cite the
package in publications please use Hankin (2022)
<doi:10.48550/ARXIV.2212.05883>.
Author: Robin K. S. Hankin [aut, cre]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between freegroup versions 1.1-8 dated 2024-01-13 and 1.1-9 dated 2025-01-30
DESCRIPTION | 16 ++++++++-------- MD5 | 35 +++++++++++++++++++---------------- NAMESPACE | 1 + NEWS.md | 6 ++++++ R/freegroup.R | 27 +++++++++++++++++++++++++++ build/partial.rdb |binary build/vignette.rds |binary data/dot.rda |binary inst/doc/freegroup.pdf |binary man/Ops.free.Rd | 14 +++++++++++--- man/backwards.Rd | 9 ++++++++- man/free.Rd | 2 +- man/primitive.Rd |only man/rfree.Rd | 13 +++++++++++-- man/subs.Rd | 2 +- tests/testthat/test_aaa.R | 22 +++++++++++++--------- tests/testthat/test_aab.R | 19 ++++++++++--------- tests/testthat/test_aae.R |only tests/testthat/test_aaf.R |only vignettes/freegroup.bib | 9 +++++++++ 20 files changed, 125 insertions(+), 50 deletions(-)
Title: Read and Write CDISC Dataset JSON Files
Description: Read, construct and write CDISC (Clinical Data Interchange Standards Consortium) Dataset JSON (JavaScript Object Notation) files, while validating per the Dataset JSON schema file, as described in CDISC (2023) <https://www.cdisc.org/standards/data-exchange/dataset-json>.
Author: Mike Stackhouse [aut, cre] ,
Nicholas Masel [aut]
Maintainer: Mike Stackhouse <mike.stackhouse@atorusresearch.com>
Diff between datasetjson versions 0.2.0 dated 2024-01-09 and 0.3.0 dated 2025-01-30
datasetjson-0.2.0/datasetjson/R/data_metadata.R |only datasetjson-0.2.0/datasetjson/R/dataset_metadata.R |only datasetjson-0.2.0/datasetjson/R/date_time_conversions.R |only datasetjson-0.2.0/datasetjson/data/sas_date_formats.rda |only datasetjson-0.2.0/datasetjson/data/sas_datetime_formats.rda |only datasetjson-0.2.0/datasetjson/data/sas_time_formats.rda |only datasetjson-0.2.0/datasetjson/data/schema_1_0_0.rda |only datasetjson-0.2.0/datasetjson/inst/doc/getting_started.R |only datasetjson-0.2.0/datasetjson/inst/doc/getting_started.Rmd |only datasetjson-0.2.0/datasetjson/inst/doc/getting_started.html |only datasetjson-0.2.0/datasetjson/man/data_metadata.Rd |only datasetjson-0.2.0/datasetjson/man/data_metadata_setters.Rd |only datasetjson-0.2.0/datasetjson/man/dataset_metadata.Rd |only datasetjson-0.2.0/datasetjson/man/file_metadata.Rd |only datasetjson-0.2.0/datasetjson/man/file_metadata_setters.Rd |only datasetjson-0.2.0/datasetjson/man/sas_date_formats.Rd |only 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Title: Clean and Analyze Continuous Glucose Monitor Data
Description: This code provides several different functions for cleaning and analyzing continuous glucose monitor data. Currently it works with 'Dexcom', 'iPro 2', 'Diasend', 'Libre', or 'Carelink' data. The cleandata() function takes a directory of CGM data files and prepares them for analysis. cgmvariables() iterates through a directory of cleaned CGM data files and produces a single spreadsheet with data for each file in either rows or columns. The column format of this spreadsheet is compatible with REDCap data upload. cgmreport() also iterates through a directory of cleaned data, and produces PDFs of individual and aggregate AGP plots. Please visit <https://github.com/childhealthbiostatscore/R-Packages/> to download the new-user guide.
Author: Tim Vigers [aut, cre]
Maintainer: Tim Vigers <timothy.vigers@cuanschutz.edu>
Diff between cgmanalysis versions 2.7.7 dated 2023-10-20 and 3.0 dated 2025-01-30
DESCRIPTION | 10 MD5 | 12 R/cgmreport.R | 242 ++++++----- R/cgmvariables.R | 1079 ++++++++++++++++++++++++++++++---------------------- R/cleandata.R | 36 + man/cgmreport.Rd | 16 man/cgmvariables.Rd | 36 - 7 files changed, 819 insertions(+), 612 deletions(-)
Title: Generalized Additive Mixed Model Interface
Description: An interface for fitting generalized additive models (GAMs) and generalized additive mixed models (GAMMs) using the 'lme4' package as the computational engine, as described in Helwig (2024) <doi:10.3390/stats7010003>. Supports default and formula methods for model specification, additive and tensor product splines for capturing nonlinear effects, and automatic determination of spline type based on the class of each predictor. Includes an S3 plot method for visualizing the (nonlinear) model terms, an S3 predict method for forming predictions from a fit model, and an S3 summary method for conducting significance testing using the Bayesian interpretation of a smoothing spline.
Author: Nathaniel E. Helwig [aut, cre]
Maintainer: Nathaniel E. Helwig <helwig@umn.edu>
Diff between gammi versions 0.1 dated 2024-09-15 and 0.2 dated 2025-01-30
ChangeLog |only DESCRIPTION | 8 ++++---- MD5 | 33 +++++++++++++++++---------------- NAMESPACE | 2 +- R/gammi.default.R | 26 ++++++++++++++++++++------ R/gammi.formula.R | 6 +++++- R/predict.gammi.R | 4 ++-- R/spline.basis.R | 5 +---- R/visualizer1.R | 14 +++++++++----- build/partial.rdb |binary man/exam.Rd | 3 +++ man/gammi.Rd | 3 +++ man/plot.gammi.Rd | 3 +++ man/predict.gammi.Rd | 3 +++ man/spline.basis.Rd | 4 ++++ man/spline.model.matrix.Rd | 3 +++ man/summary.gammi.Rd | 3 +++ man/visualizers.Rd | 8 +++++++- 18 files changed, 88 insertions(+), 40 deletions(-)
Title: Tools for the Analysis of Epidemiological Data
Description: Tools for the analysis of epidemiological and surveillance data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on the basis of single or multiple strata of count data presented in a contingency table, computation of confidence intervals around incidence risk and incidence rate estimates and sample size calculations for cross-sectional, case-control and cohort studies. Surveillance tools include functions to calculate an appropriate sample size for 1- and 2-stage representative freedom surveys, functions to estimate surveillance system sensitivity and functions to support scenario tree modelling analyses.
Author: Mark Stevenson [aut, cre] ,
Evan Sergeant [aut],
Cord Heuer [ctb],
Telmo Nunes [ctb],
Cord Heuer [ctb],
Jonathon Marshall [ctb],
Javier Sanchez [ctb],
Ron Thornton [ctb],
Jeno Reiczigel [ctb],
Jim Robison-Cox [ctb],
Paola Sebastiani [ctb],
Peter Soly [...truncated...]
Maintainer: Mark Stevenson <mark.stevenson1@unimelb.edu.au>
Diff between epiR versions 2.0.78 dated 2024-12-09 and 2.0.80 dated 2025-01-30
DESCRIPTION | 8 ++--- MD5 | 44 +++++++++++++++-------------- NAMESPACE | 1 NEWS | 20 +++++++++++++ R/epi.2by2.R | 6 +-- R/epi.fpos.R |only inst/doc/epiR_descriptive.html | 18 +++++------ inst/doc/epiR_measures_of_association.html | 16 +++++----- inst/doc/epiR_sample_size.html | 4 +- inst/doc/epiR_surveillance.html | 14 ++++----- man/epi.about.Rd | 28 +++++++++++++++++- man/epi.blcm.paras.Rd | 2 - man/epi.bohning.Rd | 8 ++--- man/epi.conf.Rd | 10 +++--- man/epi.dms.Rd | 4 +- man/epi.fpos.Rd |only man/epi.herdtest.Rd | 2 - man/epi.indirectadj.Rd | 10 +++--- man/epi.ltd.Rd | 4 +- man/epi.smd.Rd | 12 +++---- man/epi.smr.Rd | 6 ++- man/epi.ssstrataestb.Rd | 4 +- man/rsu.pstar.Rd | 2 - man/rsu.sep.cens.Rd | 2 - 24 files changed, 138 insertions(+), 87 deletions(-)
Title: Groupwise Statistics, LSmeans, Linear Estimates, Utilities
Description: Utility package containing:
1) Facilities for working with grouped data: 'do' something to data
stratified 'by' some variables.
2) LSmeans (least-squares means), general linear estimates.
3) Restrict functions to a smaller domain.
4) Miscellaneous other utilities.
Author: Ulrich Halekoh [aut, cph],
Soeren Hoejsgaard [aut, cre, cph]
Maintainer: Soeren Hoejsgaard <sorenh@math.aau.dk>
Diff between doBy versions 4.6.24 dated 2024-10-07 and 4.6.25 dated 2025-01-30
doBy-4.6.24/doBy/inst/doc/linest_lsmeans.rnw |only doBy-4.6.24/doBy/man/is-estimable.Rd |only doBy-4.6.24/doBy/man/null-basis.Rd |only doBy-4.6.24/doBy/vignettes/linest_lsmeans.rnw |only doBy-4.6.25/doBy/DESCRIPTION | 6 - doBy-4.6.25/doBy/MD5 | 48 ++++++------ doBy-4.6.25/doBy/NAMESPACE | 1 doBy-4.6.25/doBy/NEWS.md | 5 + doBy-4.6.25/doBy/R/DATA_doby.R | 31 +++++++ doBy-4.6.25/doBy/R/by_lmBy.R | 14 +-- doBy-4.6.25/doBy/R/expr_to_fun.R | 39 ++++----- doBy-4.6.25/doBy/R/linest_LSmeans.R | 3 doBy-4.6.25/doBy/R/linest_compute.R | 103 +++++++++++++++++--------- doBy-4.6.25/doBy/R/linest_matrix.R | 34 ++------ doBy-4.6.25/doBy/R/linest_utilities.R | 103 +------------------------- doBy-4.6.25/doBy/build/vignette.rds |binary doBy-4.6.25/doBy/data/shoes.RData |only doBy-4.6.25/doBy/inst/doc/doby.html | 6 - doBy-4.6.25/doBy/inst/doc/linest_lsmeans.R | 12 ++- doBy-4.6.25/doBy/inst/doc/linest_lsmeans.Rnw |only doBy-4.6.25/doBy/inst/doc/linest_lsmeans.pdf |binary doBy-4.6.25/doBy/inst/doc/section_fun.html | 20 ++--- doBy-4.6.25/doBy/man/crickets.Rd | 2 doBy-4.6.25/doBy/man/expr_to_fun.Rd | 31 +++---- doBy-4.6.25/doBy/man/income.Rd | 20 +++++ doBy-4.6.25/doBy/man/is_estimable.Rd |only doBy-4.6.25/doBy/man/linest.Rd | 6 - doBy-4.6.25/doBy/man/ls-means.Rd | 3 doBy-4.6.25/doBy/vignettes/linest_lsmeans.Rnw |only 29 files changed, 231 insertions(+), 256 deletions(-)
Title: Connecting to Various Database Platforms
Description: An R 'DataBase Interface' ('DBI') compatible interface to various database platforms ('PostgreSQL', 'Oracle', 'Microsoft SQL Server',
'Amazon Redshift', 'Microsoft Parallel Database Warehouse', 'IBM Netezza', 'Apache Impala', 'Google BigQuery', 'Snowflake', 'Spark', 'SQLite',
and 'InterSystems IRIS'). Also includes support for fetching data as 'Andromeda' objects. Uses either 'Java Database Connectivity' ('JDBC') or
other 'DBI' drivers to connect to databases.
Author: Martijn Schuemie [aut, cre],
Marc Suchard [aut],
Observational Health Data Science and Informatics [cph],
Microsoft Inc. [cph] ,
PostgreSQL Global Development Group [cph] ,
Oracle Inc. [cph] ,
Amazon Inc. [cph]
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between DatabaseConnector versions 6.3.3 dated 2025-01-15 and 6.4.0 dated 2025-01-30
DESCRIPTION | 17 +- MD5 | 49 +++---- NEWS.md | 9 + R/BulkLoad.R | 81 +++++++++++ R/Connect.R | 35 ++++- R/DatabaseConnector.R | 4 R/Drivers.R | 11 + R/InsertTable.R | 9 + R/RStudio.R | 2 R/Sql.R | 13 + README.md | 1 inst/doc/Connecting.Rmd | 5 inst/doc/Connecting.pdf |binary inst/doc/DbiAndDbplyr.pdf |binary inst/doc/Querying.pdf |binary inst/sql/sql_server/sparkCopy.sql |only man/DatabaseConnector-package.Rd | 2 man/connect.Rd | 12 + man/createConnectionDetails.Rd | 12 + man/createDbiConnectionDetails.Rd | 1 man/downloadJdbcDrivers.Rd | 2 man/insertTable.Rd | 7 + man/jdbcDrivers.Rd | 2 tests/testthat/setup.R | 266 +++++++++++++++++++++----------------- tests/testthat/test-insertTable.R | 2 vignettes/Connecting.Rmd | 5 26 files changed, 381 insertions(+), 166 deletions(-)
More information about DatabaseConnector at CRAN
Permanent link
Title: The Weyl Algebra
Description: A suite of routines for Weyl algebras. Notation follows
Coutinho (1995, ISBN 0-521-55119-6, "A Primer of Algebraic
D-Modules"). Uses 'disordR' discipline
(Hankin 2022 <doi:10.48550/arXiv.2210.03856>). To cite
the package in publications, use Hankin
2022 <doi:10.48550/arXiv.2212.09230>.
Author: Robin K. S. Hankin [aut, cre]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between weyl versions 0.0-5 dated 2024-07-03 and 0.0-6 dated 2025-01-30
DESCRIPTION | 13 +++++++------ MD5 | 42 +++++++++++++++++++++++------------------- NAMESPACE | 2 ++ NEWS.md |only R/extract.R |only R/print.R | 2 +- R/weyl.R | 39 +++++++++++++++++++++++++++++++++++---- R/weyl_product.R | 5 ++--- README.md | 20 +++++++++++++++----- build/partial.rdb |binary build/vignette.rds |binary data/dot.rda |binary data/x_and_d.rda |binary inst/doc/weyl.R | 3 +++ inst/doc/weyl.Rmd | 2 ++ inst/doc/weyl.html | 32 +++++++++++++++++--------------- man/Ops.Rd | 3 +++ man/horner.Rd |only man/ooom.Rd |only man/print.Rd | 1 + man/rweyl.Rd | 29 +++++++++++++++++++++++++++-- man/weyl.Rd | 14 ++++++++++---- tests/testthat/test_aaa.R | 9 +++++++-- vignettes/weyl.Rmd | 2 ++ 24 files changed, 157 insertions(+), 61 deletions(-)
Title: Toolkit for Reduced Form and Structural Smooth Transition Vector
Autoregressive Models
Description: Maximum likelihood estimation of smooth transition vector
autoregressive models with various types of transition weight functions,
conditional distributions, and identification methods. Constrained
estimation with various types of constraints is available. Residual based
model diagnostics, forecasting, simulations, and calculation of impulse
response functions, generalized impulse response functions, and generalized
forecast error variance decompositions. See
Heather Anderson, Farshid Vahid (1998) <doi:10.1016/S0304-4076(97)00076-6>,
Helmut Lütkepohl, Aleksei Netšunajev (2017) <doi:10.1016/j.jedc.2017.09.001>,
Markku Lanne, Savi Virolainen (2024) <doi:10.48550/arXiv.2403.14216>,
Savi Virolainen (2024) <doi:10.48550/arXiv.2404.19707>.
Author: Savi Virolainen [aut, cre]
Maintainer: Savi Virolainen <savi.virolainen@helsinki.fi>
Diff between sstvars versions 1.1.2 dated 2025-01-07 and 1.1.3 dated 2025-01-30
DESCRIPTION | 6 +++--- MD5 | 26 +++++++++++++------------- NEWS.md | 8 ++++++++ R/MAINest.R | 4 ++-- R/STVARconstruction.R | 32 ++++++++++++++++++++++---------- R/parameterReforms.R | 35 +++++++++++++++++++---------------- R/printMethods.R | 15 ++++++++------- inst/doc/sstvars-vignette.Rnw | 2 +- inst/doc/sstvars-vignette.pdf |binary man/fitSTVAR.Rd | 2 +- man/reorder_B_columns.Rd | 16 +++++++++------- man/sort_impactmats.Rd | 13 +++++++------ man/swap_B_signs.Rd | 6 ++++-- vignettes/sstvars-vignette.Rnw | 2 +- 14 files changed, 98 insertions(+), 69 deletions(-)
Title: Data Simulation for Life Science and Breeding
Description: Data simulator including genotype, phenotype, pedigree,
selection and reproduction in R. It simulates most of reproduction process
of animals or plants and provides data for GS (Genomic Selection),
GWAS (Genome-Wide Association Study), and Breeding.
For ADI model, please see Kao C and Zeng Z (2002) <doi:10.1093/genetics/160.3.1243>.
For build.cov, please see B. D. Ripley (1987) <ISBN:9780470009604>.
Author: Dong Yin [aut],
Xuanning Zhang [aut],
Lilin Yin [aut],
Haohao Zhang [aut],
Zhenshuang Tang [aut],
Jingya Xu [aut],
Xiaohui Yuan [aut],
Xiang Zhou [aut],
Xinyun Li [aut],
Shuhong Zhao [aut],
Xiaolei Liu [cre, aut, cph]
Maintainer: Xiaolei Liu <xll198708@gmail.com>
Diff between simer versions 0.9.0.5 dated 2024-09-17 and 0.9.0.6 dated 2025-01-30
simer-0.9.0.5/simer/man/simer.Data.Kin.Rd |only simer-0.9.0.5/simer/src/MinimalProgressBar.h |only simer-0.9.0.5/simer/src/emma.cpp |only simer-0.9.0.6/simer/DESCRIPTION | 14 simer-0.9.0.6/simer/MD5 | 183 ++-- simer-0.9.0.6/simer/NAMESPACE | 178 +-- simer-0.9.0.6/simer/R/RcppExports.R | 48 - simer-0.9.0.6/simer/R/simer.Data.R | 130 -- simer-0.9.0.6/simer/R/simer.Genotype.r | 219 +++- simer-0.9.0.6/simer/R/simer.Parameter.r | 10 simer-0.9.0.6/simer/R/simer.Phenotype.r | 58 - simer-0.9.0.6/simer/R/simer.Reproduces.r | 80 - simer-0.9.0.6/simer/R/simer.Utility.R | 57 - simer-0.9.0.6/simer/R/simer.r | 2 simer-0.9.0.6/simer/R/zzz.R | 37 simer-0.9.0.6/simer/README.md | 52 + simer-0.9.0.6/simer/data/simdata.rda |binary simer-0.9.0.6/simer/inst/extdata/01bigmemory/demo.geno.bin |binary simer-0.9.0.6/simer/inst/extdata/01bigmemory/demo.geno.desc | 6 simer-0.9.0.6/simer/man/GxG.network.Rd | 66 - simer-0.9.0.6/simer/man/IndPerGen.Rd | 90 +- simer-0.9.0.6/simer/man/annotation.Rd | 114 +- simer-0.9.0.6/simer/man/bigt.Rd |only simer-0.9.0.6/simer/man/build.cov.Rd | 76 - simer-0.9.0.6/simer/man/cal.eff.Rd | 108 +- simer-0.9.0.6/simer/man/checkEnv.Rd | 66 - simer-0.9.0.6/simer/man/format_time.Rd | 56 - simer-0.9.0.6/simer/man/generate.map.Rd | 78 - simer-0.9.0.6/simer/man/generate.pop.Rd | 68 - simer-0.9.0.6/simer/man/geno.cvt1.Rd | 73 - simer-0.9.0.6/simer/man/geno.cvt2.Rd | 73 - simer-0.9.0.6/simer/man/genotype.Rd | 92 +- simer-0.9.0.6/simer/man/getfam.Rd | 72 - simer-0.9.0.6/simer/man/load_if_installed.Rd | 50 - simer-0.9.0.6/simer/man/logging.initialize.Rd | 52 - simer-0.9.0.6/simer/man/logging.log.Rd | 88 - simer-0.9.0.6/simer/man/logging.print.Rd | 68 - simer-0.9.0.6/simer/man/make_line.Rd | 66 - simer-0.9.0.6/simer/man/mate.2waycro.Rd | 126 +- simer-0.9.0.6/simer/man/mate.3waycro.Rd | 126 +- simer-0.9.0.6/simer/man/mate.4waycro.Rd | 126 +- simer-0.9.0.6/simer/man/mate.Rd | 94 +- simer-0.9.0.6/simer/man/mate.assort.Rd | 122 +- simer-0.9.0.6/simer/man/mate.backcro.Rd | 126 +- simer-0.9.0.6/simer/man/mate.clone.Rd | 122 +- simer-0.9.0.6/simer/man/mate.dh.Rd | 122 +- simer-0.9.0.6/simer/man/mate.disassort.Rd | 122 +- simer-0.9.0.6/simer/man/mate.randexself.Rd | 122 +- simer-0.9.0.6/simer/man/mate.randmate.Rd | 122 +- simer-0.9.0.6/simer/man/mate.selfpol.Rd | 122 +- simer-0.9.0.6/simer/man/mate.userped.Rd | 114 +- simer-0.9.0.6/simer/man/mkl_env.Rd | 54 - simer-0.9.0.6/simer/man/param.annot.Rd | 108 +- simer-0.9.0.6/simer/man/param.geno.Rd | 78 - simer-0.9.0.6/simer/man/param.global.Rd | 86 - simer-0.9.0.6/simer/man/param.pheno.Rd | 100 +- simer-0.9.0.6/simer/man/param.reprod.Rd | 72 - simer-0.9.0.6/simer/man/param.sel.Rd | 84 - simer-0.9.0.6/simer/man/param.simer.Rd | 76 - simer-0.9.0.6/simer/man/paste_label.Rd | 62 - simer-0.9.0.6/simer/man/phenotype.Rd | 206 ++-- simer-0.9.0.6/simer/man/pop.geno.Rd | 42 simer-0.9.0.6/simer/man/pop.map.Rd | 42 simer-0.9.0.6/simer/man/print_accomplished.Rd | 54 - simer-0.9.0.6/simer/man/print_bar.Rd | 114 +- simer-0.9.0.6/simer/man/print_info.Rd | 140 +-- simer-0.9.0.6/simer/man/remove_bigmatrix.Rd | 86 - simer-0.9.0.6/simer/man/reproduces.Rd | 122 +- simer-0.9.0.6/simer/man/rule_wrap.Rd | 62 - simer-0.9.0.6/simer/man/selects.Rd | 118 +- simer-0.9.0.6/simer/man/simer.Data.Bfile2MVP.Rd | 111 +- simer-0.9.0.6/simer/man/simer.Data.Env.Rd | 118 +- simer-0.9.0.6/simer/man/simer.Data.Geno.Rd | 158 +-- simer-0.9.0.6/simer/man/simer.Data.Impute.Rd | 112 +- simer-0.9.0.6/simer/man/simer.Data.Json.Rd | 128 +- simer-0.9.0.6/simer/man/simer.Data.MVP2Bfile.Rd | 108 +- simer-0.9.0.6/simer/man/simer.Data.MVP2MVP.Rd | 90 +- simer-0.9.0.6/simer/man/simer.Data.Map.Rd | 98 +- simer-0.9.0.6/simer/man/simer.Data.Ped.Rd | 152 +-- simer-0.9.0.6/simer/man/simer.Data.Pheno.Rd | 122 +- simer-0.9.0.6/simer/man/simer.Data.Rd | 96 +- simer-0.9.0.6/simer/man/simer.Data.SELIND.Rd | 102 +- simer-0.9.0.6/simer/man/simer.Data.cHIBLUP.Rd | 114 +- simer-0.9.0.6/simer/man/simer.Rd | 82 - simer-0.9.0.6/simer/man/simer.Version.Rd | 58 - simer-0.9.0.6/simer/man/write.file.Rd | 68 - simer-0.9.0.6/simer/src/Makevars | 12 simer-0.9.0.6/simer/src/Makevars.win | 12 simer-0.9.0.6/simer/src/RcppExports.cpp | 156 ++- simer-0.9.0.6/simer/src/data_converter.cpp | 345 ++++--- simer-0.9.0.6/simer/src/genotype.cpp | 540 +++++++----- simer-0.9.0.6/simer/src/impute.cpp | 277 +++++- simer-0.9.0.6/simer/src/pedigree.cpp | 55 - simer-0.9.0.6/simer/src/simer.h |only simer-0.9.0.6/simer/src/simer_omp.h | 17 95 files changed, 4706 insertions(+), 4127 deletions(-)
Title: Scale Mixture of Normal Distribution in Linear Mixed-Effects
Model
Description: Bayesian analysis of censored linear mixed-effects models that replace Gaussian assumptions with a flexible class of distributions, such as the scale mixture of normal family distributions, considering a damped exponential correlation structure which was employed to account for within-subject autocorrelation among irregularly observed measures. For more details, see Kelin Zhong, Fernanda L. Schumacher, Luis M. Castro, Victor H. Lachos (2025) <doi:10.1002/sim.10295>.
Author: Kelin Zhong [aut, cre],
Fernanda L. Schumacher [aut],
Luis M. Castro [aut],
Victor H. Lachos [aut],
Jalmar M.F. Carrasco [aut]
Maintainer: Kelin Zhong <kelin.zhong@uconn.edu>
Diff between SMNlmec versions 0.1.0 dated 2024-11-26 and 1.0.0 dated 2025-01-30
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/SMNlmec.est.R | 2 +- man/SMNlmec.est.Rd | 2 +- 4 files changed, 9 insertions(+), 9 deletions(-)
Title: Easy Import of the EU Labour Market Policy Data
Description: European Commission's Labour Market Policy (LMP) database
(<https://webgate.ec.europa.eu/empl/redisstat/databrowser/explore/all/lmp?lang=en&display=card&sort=category>)
provides information on labour market interventions, which are government
actions to help and support the unemployed and other disadvantaged groups in
the transition from unemployment or inactivity to work. It covers the EU
countries and Norway. This package provides functions for downloading and
importing the LMP data and metadata (codelists).
Author: Aleksander Rutkowski [aut, cre]
Maintainer: Aleksander Rutkowski <alek.rutkowski@gmail.com>
Diff between LMPdata versions 0.1.0 dated 2024-07-18 and 0.2.0 dated 2025-01-30
DESCRIPTION | 8 ++--- LICENSE | 4 +- MD5 | 12 ++++---- NAMESPACE | 12 ++++---- R/lib.R | 10 +++---- man/LMPdata.Rd | 16 +++++------ man/importLabels.Rd | 74 ++++++++++++++++++++++++++-------------------------- 7 files changed, 68 insertions(+), 68 deletions(-)
Title: 'R6'-Based Flexible Framework for Permutation Tests
Description: Implements non-parametric tests from Higgins (2004, ISBN:0534387756), including tests for one sample, two samples, k samples, paired comparisons, blocked designs, trends and association. Built with 'Rcpp' for efficiency and 'R6' for flexible, object-oriented design, the package provides a unified framework for performing or creating custom permutation tests.
Author: Yan Du [aut, cre]
Maintainer: Yan Du <isduyan@outlook.com>
Diff between LearnNonparam versions 1.2.6 dated 2024-12-17 and 1.2.7 dated 2025-01-30
DESCRIPTION | 6 - MD5 | 108 +++++++++++++++++++----------- NAMESPACE | 1 NEWS.md | 12 +++ R/AnsariBradley.R | 13 +-- R/ChiSquare.R | 16 ++-- R/Correlation.R | 81 +++++++++++++--------- R/Difference.R | 22 +++--- R/Friedman.R | 22 +++--- R/JonckheereTerpstra.R | 24 +++--- R/KSampleTest.R | 2 R/KolmogorovSmirnov.R | 15 ++-- R/KruskalWallis.R | 12 +-- R/MultipleComparison.R | 2 R/OneSampleTest.R | 2 R/OneWay.R | 43 ++++++----- R/Page.R | 11 +-- R/PairedDifference.R | 30 +++----- R/PermuTest.R | 12 +-- R/RCBDOneWay.R | 30 ++++---- R/RatioMeanDeviance.R | 16 +--- R/ScoreSum.R | 2 R/SiegelTukey.R | 3 R/Sign.R | 2 R/Studentized.R | 16 ++-- R/TwoSampleAssociationTest.R | 6 - R/TwoSampleTest.R | 3 R/Wilcoxon.R | 6 - R/pmt.R | 10 +- README.md |only inst/include/pmt/impl_association_pmt.hpp | 40 +++++------ inst/include/pmt/impl_ksample_pmt.hpp | 35 ++++----- inst/include/pmt/impl_multcomp_pmt.hpp | 48 ++++++------- inst/include/pmt/impl_paired_pmt.hpp | 40 +++++------ inst/include/pmt/impl_rcbd_pmt.hpp | 34 +++------ inst/include/pmt/impl_table_pmt.hpp | 48 +++++-------- inst/include/pmt/impl_twosample_pmt.hpp | 71 ++++++++++++------- inst/include/pmt/permutation.hpp | 37 ++++++---- inst/include/pmt/progress.hpp | 65 +++++++++--------- man/figures/README |only man/references |only src/pmt_interface.cpp | 67 +++++++----------- 42 files changed, 543 insertions(+), 470 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-12-23 2.0.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-01-16 1.0.1
2023-05-04 0.2.2
2023-02-27 0.2.1
2021-01-28 0.2.0
2021-01-21 0.1.4