Title: Tools for Analyzing Remote Sensing Forest Data
Description: Tools for analyzing remote sensing forest data, including functions for detecting treetops from canopy models, outlining tree crowns, and calculating textural metrics.
Author: Andrew Plowright [aut, cre],
Jean-Romain Roussel [ctb]
Maintainer: Andrew Plowright <andrew.plowright@alumni.ubc.ca>
Diff between ForestTools versions 1.0.2 dated 2024-04-28 and 1.0.3 dated 2025-02-03
ForestTools-1.0.2/ForestTools/README.md |only ForestTools-1.0.3/ForestTools/DESCRIPTION | 10 ForestTools-1.0.3/ForestTools/MD5 | 15 ForestTools-1.0.3/ForestTools/NEWS.md | 246 ++--- ForestTools-1.0.3/ForestTools/R/vwf.R | 419 +++++----- ForestTools-1.0.3/ForestTools/man/vwf.Rd | 7 ForestTools-1.0.3/ForestTools/tests/testthat/test_data/ttops_orphans.gpkg |only ForestTools-1.0.3/ForestTools/tests/testthat/test_data/ttops_test.gpkg |only ForestTools-1.0.3/ForestTools/tests/testthat/test_glcm_internal.R | 236 ++--- ForestTools-1.0.3/ForestTools/tests/testthat/test_mcws.R | 109 +- 10 files changed, 529 insertions(+), 513 deletions(-)
Title: Publication-Ready PCA, t-SNE, and UMAP Plots
Description: Provides tools for creating publication-ready dimensionality reduction plots, including Principal Component Analysis (PCA), t-Distributed Stochastic Neighbor Embedding (t-SNE), and Uniform Manifold Approximation and Projection (UMAP). This package helps visualize high-dimensional data with options for custom labels, density plots, and faceting, using the 'ggplot2' framework Wickham (2016) <doi:10.1007/978-3-319-24277-4>.
Author: Yaoxiang Li [cre, aut]
Maintainer: Yaoxiang Li <liyaoxiang@outlook.com>
Diff between ggpca versions 0.1.2 dated 2024-10-28 and 0.1.3 dated 2025-02-03
DESCRIPTION | 6 MD5 | 17 - NAMESPACE | 3 R/utils.R | 187 +++++++++++++++---- build/vignette.rds |binary inst/doc/ggpca-examples.Rmd | 420 +++++++++++++++++++++---------------------- inst/doc/ggpca-examples.html | 38 +-- man/ggpca.Rd | 11 - man/process_missing_value.Rd |only vignettes/ggpca-examples.Rmd | 420 +++++++++++++++++++++---------------------- 10 files changed, 612 insertions(+), 490 deletions(-)
Title: Database Queries Using 'data.table' Syntax
Description: Query database tables over a 'DBI' connection using 'data.table' syntax.
Attach database schemas to the search path. Automatically merge using foreign
key constraints.
Author: Kjell P. Konis [aut, cre],
Luis Rocha [ctb]
Maintainer: Kjell P. Konis <kjellk@gmail.com>
Diff between dbi.table versions 1.0.1 dated 2024-12-10 and 1.0.3 dated 2025-02-03
dbi.table-1.0.1/dbi.table/inst/example_files/LICENSE |only dbi.table-1.0.1/dbi.table/inst/example_files/chinook_export/album.csv.bz2 |only dbi.table-1.0.1/dbi.table/inst/example_files/chinook_export/artist.csv.bz2 |only dbi.table-1.0.1/dbi.table/inst/example_files/chinook_export/customer.csv.bz2 |only dbi.table-1.0.1/dbi.table/inst/example_files/chinook_export/employee.csv.bz2 |only dbi.table-1.0.1/dbi.table/inst/example_files/chinook_export/genre.csv.bz2 |only dbi.table-1.0.1/dbi.table/inst/example_files/chinook_export/invoice.csv.bz2 |only dbi.table-1.0.1/dbi.table/inst/example_files/chinook_export/invoiceline.csv.bz2 |only dbi.table-1.0.1/dbi.table/inst/example_files/chinook_export/mediatype.csv.bz2 |only dbi.table-1.0.1/dbi.table/inst/example_files/chinook_export/playlist.csv.bz2 |only dbi.table-1.0.1/dbi.table/inst/example_files/chinook_export/playlisttrack.csv.bz2 |only dbi.table-1.0.1/dbi.table/inst/example_files/chinook_export/track.csv.bz2 |only dbi.table-1.0.1/dbi.table/man/as.data.table.Rd |only dbi.table-1.0.3/dbi.table/DESCRIPTION | 22 dbi.table-1.0.3/dbi.table/MD5 | 98 ++-- dbi.table-1.0.3/dbi.table/NAMESPACE | 6 dbi.table-1.0.3/dbi.table/NEWS.md |only dbi.table-1.0.3/dbi.table/R/DBI_methods.R | 19 dbi.table-1.0.3/dbi.table/R/as.data.table.R |only dbi.table-1.0.3/dbi.table/R/attach.R | 65 +- dbi.table-1.0.3/dbi.table/R/calls.R | 10 dbi.table-1.0.3/dbi.table/R/catalog.R | 140 +++--- dbi.table-1.0.3/dbi.table/R/connection.R | 4 dbi.table-1.0.3/dbi.table/R/dbi.table.R | 84 +-- dbi.table-1.0.3/dbi.table/R/examples.R | 14 dbi.table-1.0.3/dbi.table/R/extract.R | 31 - dbi.table-1.0.3/dbi.table/R/information_schema.R | 111 ++--- dbi.table-1.0.3/dbi.table/R/merge.R | 146 ++++-- dbi.table-1.0.3/dbi.table/R/onLoad.R | 13 dbi.table-1.0.3/dbi.table/R/reference.test.R | 22 dbi.table-1.0.3/dbi.table/R/relational.R | 221 +++------- dbi.table-1.0.3/dbi.table/R/sql.join.R | 155 +++---- dbi.table-1.0.3/dbi.table/R/utilities.R | 86 +++ dbi.table-1.0.3/dbi.table/inst/doc/introduction_to_dbi_table.R | 1 dbi.table-1.0.3/dbi.table/inst/doc/introduction_to_dbi_table.Rmd | 3 dbi.table-1.0.3/dbi.table/inst/doc/introduction_to_dbi_table.html | 21 dbi.table-1.0.3/dbi.table/inst/example_files/chinook_export/LICENSE |only dbi.table-1.0.3/dbi.table/inst/example_files/chinook_export/album.csv |only dbi.table-1.0.3/dbi.table/inst/example_files/chinook_export/artist.csv |only dbi.table-1.0.3/dbi.table/inst/example_files/chinook_export/customer.csv |only dbi.table-1.0.3/dbi.table/inst/example_files/chinook_export/employee.csv |only dbi.table-1.0.3/dbi.table/inst/example_files/chinook_export/genre.csv |only dbi.table-1.0.3/dbi.table/inst/example_files/chinook_export/invoice.csv |only dbi.table-1.0.3/dbi.table/inst/example_files/chinook_export/invoiceline.csv |only dbi.table-1.0.3/dbi.table/inst/example_files/chinook_export/mediatype.csv |only dbi.table-1.0.3/dbi.table/inst/example_files/chinook_export/playlist.csv |only dbi.table-1.0.3/dbi.table/inst/example_files/chinook_export/playlisttrack.csv |only dbi.table-1.0.3/dbi.table/inst/example_files/chinook_export/track.csv |only dbi.table-1.0.3/dbi.table/man/DBI-methods.Rd | 3 dbi.table-1.0.3/dbi.table/man/as.data.frame.Rd |only dbi.table-1.0.3/dbi.table/man/dbi.attach.Rd | 6 dbi.table-1.0.3/dbi.table/man/dbi.catalog.Rd | 12 dbi.table-1.0.3/dbi.table/man/dbi.table-package.Rd | 4 dbi.table-1.0.3/dbi.table/man/merge.Rd | 24 - dbi.table-1.0.3/dbi.table/man/reference.test.Rd | 1 dbi.table-1.0.3/dbi.table/man/sql.join.Rd | 8 dbi.table-1.0.3/dbi.table/tests/testthat/helper-library(data.table).R |only dbi.table-1.0.3/dbi.table/tests/testthat/test-DBI_methods.R |only dbi.table-1.0.3/dbi.table/tests/testthat/test-assumptions.R | 10 dbi.table-1.0.3/dbi.table/tests/testthat/test-attach.R | 47 ++ dbi.table-1.0.3/dbi.table/tests/testthat/test-data.table-set-functions.R |only dbi.table-1.0.3/dbi.table/tests/testthat/test-dbi.table.R | 1 dbi.table-1.0.3/dbi.table/tests/testthat/test-merge.R | 4 dbi.table-1.0.3/dbi.table/tests/testthat/test-relational.R |only dbi.table-1.0.3/dbi.table/tests/testthat/test-sql.join.R | 3 dbi.table-1.0.3/dbi.table/vignettes/introduction_to_dbi_table.Rmd | 3 66 files changed, 775 insertions(+), 623 deletions(-)
Title: Access, Retrieve, and Work with CMHC Data
Description: Wrapper around the Canadian Mortgage and Housing Corporation (CMHC) web interface. It enables programmatic and reproducible access to a wide variety of housing data from CMHC.
Author: Jens von Bergmann [aut, cre]
Maintainer: Jens von Bergmann <jens@mountainmath.ca>
Diff between cmhc versions 0.2.9 dated 2024-11-05 and 0.2.10 dated 2025-02-03
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 5 +++++ R/cmhc_tables.R | 3 ++- README.md | 6 +++--- build/vignette.rds |binary inst/doc/basic_usage.html | 6 +++--- inst/doc/rental_universe.html | 4 ++-- 8 files changed, 25 insertions(+), 19 deletions(-)
Title: Plot Stacked Areas and Confidence Bands as Filled Polygons
Description: Plot stacked areas and confidence bands as filled polygons, or add
polygons to existing plots. A variety of input formats are supported,
including vectors, matrices, data frames, formulas, etc.
Author: Arni Magnusson [aut, cre]
Maintainer: Arni Magnusson <thisisarni@gmail.com>
Diff between areaplot versions 2.1.2 dated 2024-01-14 and 2.1.3 dated 2025-02-03
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- NEWS.md | 14 ++++++++++++++ R/areaplot-package.R | 6 ++---- R/areaplot.R | 38 +++++++++++++++++++++++++++----------- R/confplot.R | 8 +++++--- man/areaplot-package.Rd | 9 ++++++++- man/areaplot.Rd | 19 ++++++++++++++++--- man/confplot.Rd | 6 +++--- 9 files changed, 88 insertions(+), 38 deletions(-)
Title: Filter Module for 'teal' Applications
Description: Data filtering module for 'teal' applications. Allows for
interactive filtering of data stored in 'data.frame' and
'MultiAssayExperiment' objects. Also displays filtered and unfiltered
observation counts.
Author: Dawid Kaledkowski [aut, cre] ,
Pawel Rucki [aut],
Aleksander Chlebowski [aut] ,
Andre Verissimo [aut] ,
Kartikeya Kirar [aut],
Marcin Kosinski [aut],
Chendi Liao [rev],
Dony Unardi [rev],
Andrew Bates [aut],
Mahmoud Hallal [aut],
Nikolas Burkoff [aut [...truncated...]
Maintainer: Dawid Kaledkowski <dawid.kaledkowski@roche.com>
Diff between teal.slice versions 0.5.1 dated 2024-04-30 and 0.6.0 dated 2025-02-03
teal.slice-0.5.1/teal.slice/man/check_simple_name.Rd |only teal.slice-0.6.0/teal.slice/DESCRIPTION | 27 teal.slice-0.6.0/teal.slice/MD5 | 130 +-- teal.slice-0.6.0/teal.slice/NEWS.md | 19 teal.slice-0.6.0/teal.slice/R/FilterState.R | 76 +- teal.slice-0.6.0/teal.slice/R/FilterStateChoices.R | 60 - teal.slice-0.6.0/teal.slice/R/FilterStateDate.R | 22 teal.slice-0.6.0/teal.slice/R/FilterStateDatettime.R | 26 teal.slice-0.6.0/teal.slice/R/FilterStateExpr.R | 38 - teal.slice-0.6.0/teal.slice/R/FilterStateLogical.R | 14 teal.slice-0.6.0/teal.slice/R/FilterStateRange.R | 116 +-- teal.slice-0.6.0/teal.slice/R/FilterStates.R | 98 +- teal.slice-0.6.0/teal.slice/R/FilterStatesMatrix.R | 5 teal.slice-0.6.0/teal.slice/R/FilterStatesSE.R | 41 - teal.slice-0.6.0/teal.slice/R/FilteredData-utils.R | 18 teal.slice-0.6.0/teal.slice/R/FilteredData.R | 354 ++++------ teal.slice-0.6.0/teal.slice/R/FilteredDataset.R | 199 +++-- teal.slice-0.6.0/teal.slice/R/FilteredDatasetDataframe.R | 15 teal.slice-0.6.0/teal.slice/R/FilteredDatasetDefault.R | 3 teal.slice-0.6.0/teal.slice/R/FilteredDatasetMAE.R | 8 teal.slice-0.6.0/teal.slice/R/count_labels.R | 14 teal.slice-0.6.0/teal.slice/R/filter_panel_api.R | 9 teal.slice-0.6.0/teal.slice/R/teal_slice.R | 1 teal.slice-0.6.0/teal.slice/R/teal_slices.R | 3 teal.slice-0.6.0/teal.slice/R/utils.R | 99 ++ teal.slice-0.6.0/teal.slice/R/zzz.R | 2 teal.slice-0.6.0/teal.slice/README.md | 11 teal.slice-0.6.0/teal.slice/build/vignette.rds |binary teal.slice-0.6.0/teal.slice/inst/css/filter-panel.css | 95 ++ teal.slice-0.6.0/teal.slice/inst/doc/filter-panel-for-developers.R | 2 teal.slice-0.6.0/teal.slice/inst/doc/filter-panel-for-developers.Rmd | 2 teal.slice-0.6.0/teal.slice/inst/doc/filter-panel-for-developers.html | 259 +++---- teal.slice-0.6.0/teal.slice/inst/doc/teal-slice-classes.html | 22 teal.slice-0.6.0/teal.slice/inst/doc/teal-slice.R | 2 teal.slice-0.6.0/teal.slice/inst/doc/teal-slice.Rmd | 30 teal.slice-0.6.0/teal.slice/inst/doc/teal-slice.html | 118 +-- teal.slice-0.6.0/teal.slice/inst/js/icons.js |only teal.slice-0.6.0/teal.slice/inst/js/togglePanelItems.js |only teal.slice-0.6.0/teal.slice/man/ChoicesFilterState.Rd | 2 teal.slice-0.6.0/teal.slice/man/DFFilterStates.Rd | 1 teal.slice-0.6.0/teal.slice/man/DataframeFilteredDataset.Rd | 2 teal.slice-0.6.0/teal.slice/man/DateFilterState.Rd | 2 teal.slice-0.6.0/teal.slice/man/DatetimeFilterState.Rd | 2 teal.slice-0.6.0/teal.slice/man/DefaultFilteredDataset.Rd | 6 teal.slice-0.6.0/teal.slice/man/EmptyFilterState.Rd | 2 teal.slice-0.6.0/teal.slice/man/FilterState.Rd | 17 teal.slice-0.6.0/teal.slice/man/FilterStateExpr.Rd | 17 teal.slice-0.6.0/teal.slice/man/FilterStates.Rd | 18 teal.slice-0.6.0/teal.slice/man/FilteredData.Rd | 76 -- teal.slice-0.6.0/teal.slice/man/FilteredDataset.Rd | 37 - teal.slice-0.6.0/teal.slice/man/LogicalFilterState.Rd | 2 teal.slice-0.6.0/teal.slice/man/MAEFilterStates.Rd | 1 teal.slice-0.6.0/teal.slice/man/MAEFilteredDataset.Rd | 2 teal.slice-0.6.0/teal.slice/man/MatrixFilterStates.Rd | 1 teal.slice-0.6.0/teal.slice/man/RangeFilterState.Rd | 2 teal.slice-0.6.0/teal.slice/man/SEFilterStates.Rd | 1 teal.slice-0.6.0/teal.slice/man/dot-finalize_session_bindings.Rd |only teal.slice-0.6.0/teal.slice/man/init_filtered_data.Rd | 6 teal.slice-0.6.0/teal.slice/man/pair_counts.Rd |only teal.slice-0.6.0/teal.slice/man/sanitize_id.Rd |only teal.slice-0.6.0/teal.slice/man/teal_slices.Rd | 2 teal.slice-0.6.0/teal.slice/tests/testthat/test-ChoicesFilterState.R | 82 ++ teal.slice-0.6.0/teal.slice/tests/testthat/test-DataframeFilteredDataset.R | 4 teal.slice-0.6.0/teal.slice/tests/testthat/test-FilteredData.R | 53 - teal.slice-0.6.0/teal.slice/tests/testthat/test-teal_slice.R | 5 teal.slice-0.6.0/teal.slice/tests/testthat/test-teal_slices.R | 7 teal.slice-0.6.0/teal.slice/tests/testthat/test-utils.R | 111 ++- teal.slice-0.6.0/teal.slice/vignettes/filter-panel-for-developers.Rmd | 2 teal.slice-0.6.0/teal.slice/vignettes/teal-slice.Rmd | 30 69 files changed, 1373 insertions(+), 1058 deletions(-)
Title: Fast Imputations Using 'Rcpp' and 'Armadillo'
Description: Fast imputations under the object-oriented programming paradigm.
Moreover there are offered a few functions built to work with popular R packages such as 'data.table' or 'dplyr'.
The biggest improvement in time performance could be achieve for a calculation where a grouping variable have to be used.
A single evaluation of a quantitative model for the multiple imputations is another major enhancement.
A new major improvement is one of the fastest predictive mean matching in the R world because of presorting and binary search.
Author: Maciej Nasinski [aut, cre]
Maintainer: Maciej Nasinski <nasinski.maciej@gmail.com>
Diff between miceFast versions 0.8.2 dated 2022-11-17 and 0.8.5 dated 2025-02-03
miceFast-0.8.2/miceFast/tests/testthat/Rplots.pdf |only miceFast-0.8.5/miceFast/DESCRIPTION | 9 miceFast-0.8.5/miceFast/MD5 | 41 miceFast-0.8.5/miceFast/NEWS.md | 10 miceFast-0.8.5/miceFast/R/VIF.R | 9 miceFast-0.8.5/miceFast/README.md | 118 +- miceFast-0.8.5/miceFast/build/vignette.rds |binary miceFast-0.8.5/miceFast/inst/doc/miceFast-intro.R | 340 ++---- miceFast-0.8.5/miceFast/inst/doc/miceFast-intro.Rmd | 587 ++++------- miceFast-0.8.5/miceFast/inst/doc/miceFast-intro.html | 925 +++++++---------- miceFast-0.8.5/miceFast/man/Rcpp_corrData-class.Rd | 13 miceFast-0.8.5/miceFast/man/Rcpp_miceFast-class.Rd | 9 miceFast-0.8.5/miceFast/man/VIF.Rd | 2 miceFast-0.8.5/miceFast/src/Makevars | 2 miceFast-0.8.5/miceFast/src/Makevars.win | 3 miceFast-0.8.5/miceFast/src/R_funs.cpp | 176 +-- miceFast-0.8.5/miceFast/src/corrData.cpp | 95 - miceFast-0.8.5/miceFast/src/miceFast.h | 84 - miceFast-0.8.5/miceFast/src/miceFast_class.cpp | 1006 ++++++++----------- miceFast-0.8.5/miceFast/src/miceFast_quantmodels.cpp | 358 +++--- miceFast-0.8.5/miceFast/tests/testthat.R | 2 miceFast-0.8.5/miceFast/vignettes/miceFast-intro.Rmd | 587 ++++------- 22 files changed, 1847 insertions(+), 2529 deletions(-)
Title: Simple Framework for Simple Automation
Description: Build a project framework for users with
access to only the most basic of automation tools.
Author: Alexander Senetcky [aut, cre, cph]
Maintainer: Alexander Senetcky <asenetcky@gmail.com>
Diff between strata versions 1.0.1 dated 2024-11-27 and 1.4.0 dated 2025-02-03
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Title: 'tidyverse' Methods and 'ggplot2' Helpers for 'terra' Objects
Description: Extension of the 'tidyverse' for 'SpatRaster' and
'SpatVector' objects of the 'terra' package. It includes also new
'geom_' functions that provide a convenient way of visualizing 'terra'
objects with 'ggplot2'.
Author: Diego Hernangomez [aut, cre, cph]
,
Dewey Dunnington [ctb] ,
ggplot2 authors [cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between tidyterra versions 0.6.2 dated 2025-01-08 and 0.7.0 dated 2025-02-03
DESCRIPTION | 14 MD5 | 42 NEWS.md | 18 R/fortify-Spat.R | 24 R/geom_spat_contour.R | 970 +++++++-------- R/geom_spatraster.R | 23 R/scales_cross_blended.R | 1494 +++++++++++------------- R/scales_grass.R | 13 R/scales_hypso.R | 35 inst/schemaorg.json | 2 man/fortify.Spat.Rd | 24 man/geom_spat_contour.Rd | 6 man/scale_cross_blended.Rd | 26 man/scale_grass.Rd | 5 man/scale_hypso.Rd | 26 tests/testthat/test-fortify-Spat.R | 94 + tests/testthat/test-geom_spatraster_3lyr.R | 46 tests/testthat/test-scales_col_cross_blended.R | 37 tests/testthat/test-scales_col_hypso.R | 4 tests/testthat/test-scales_fill_cross_blended.R | 4 tests/testthat/test-scales_fill_hypso.R | 40 tests/testthat/test-scales_grass.R | 41 22 files changed, 1599 insertions(+), 1389 deletions(-)
Title: Interface Between 'GRASS' Geographical Information System and
'R'
Description: An interface between the 'GRASS' geographical information system ('GIS') and 'R', based on starting 'R' from within the 'GRASS' 'GIS' environment, or running a free-standing 'R' session in a temporary 'GRASS' location; the package provides facilities for using all 'GRASS' commands from the 'R' command line. The original interface package for 'GRASS 5' (2000-2010) is described in Bivand (2000) <doi:10.1016/S0098-3004(00)00057-1> and Bivand (2001) <https://www.r-project.org/conferences/DSC-2001/Proceedings/Bivand.pdf>. This was succeeded by 'spgrass6' for 'GRASS 6' (2006-2016) and 'rgrass7' for 'GRASS 7' (2015-present). The 'rgrass' package modernizes the interface for 'GRASS 8' while still permitting the use of 'GRASS 7'.
Author: Roger Bivand [aut] ,
Sebastian Jeworutzki [ctb] ,
Rainer Krug [ctb] ,
Robin Lovelace [ctb] ,
Markus Neteler [ctb] ,
Steven Pawley [cre, aut] ,
Floris Vanderhaeghe [ctb]
Maintainer: Steven Pawley <dr.stevenpawley@gmail.com>
Diff between rgrass versions 0.4-4 dated 2024-09-03 and 0.5-1 dated 2025-02-03
rgrass-0.4-4/rgrass/R/rgrass.R |only rgrass-0.4-4/rgrass/man/readRAST.Rd |only rgrass-0.4-4/rgrass/man/readVECT.Rd |only rgrass-0.4-4/rgrass/tests/test_XML_xml2.R |only rgrass-0.4-4/rgrass/tests/test_XML_xml2.Rout.save |only rgrass-0.4-4/rgrass/tests/test_terra_ptr.R |only rgrass-0.4-4/rgrass/tests/test_terra_ptr.Rout.save |only rgrass-0.5-1/rgrass/DESCRIPTION | 35 - rgrass-0.5-1/rgrass/MD5 | 59 - rgrass-0.5-1/rgrass/NAMESPACE | 71 +- rgrass-0.5-1/rgrass/NEWS.md | 16 rgrass-0.5-1/rgrass/R/gmeta.R |only rgrass-0.5-1/rgrass/R/initGRASS.R | 685 ++++++++++++++------- rgrass-0.5-1/rgrass/R/options.R | 56 + rgrass-0.5-1/rgrass/R/rast_link.R | 204 ++++++ rgrass-0.5-1/rgrass/R/rgrass-package.R |only rgrass-0.5-1/rgrass/R/vect_link.R | 19 rgrass-0.5-1/rgrass/R/vect_link_ng.R | 168 +++++ rgrass-0.5-1/rgrass/R/xml1.R | 231 +++++++ rgrass-0.5-1/rgrass/build/vignette.rds |binary rgrass-0.5-1/rgrass/inst/doc/coerce.Rmd | 4 rgrass-0.5-1/rgrass/inst/doc/coerce.html | 40 - rgrass-0.5-1/rgrass/inst/doc/use.Rmd | 6 rgrass-0.5-1/rgrass/inst/doc/use.html | 21 rgrass-0.5-1/rgrass/man/execGRASS.Rd | 317 +++++++-- rgrass-0.5-1/rgrass/man/gmeta.Rd | 87 +- rgrass-0.5-1/rgrass/man/initGRASS.Rd | 224 +++++- rgrass-0.5-1/rgrass/man/read_RAST.Rd |only rgrass-0.5-1/rgrass/man/read_VECT.Rd |only rgrass-0.5-1/rgrass/man/rgrass.Rd | 97 +- rgrass-0.5-1/rgrass/tests/testthat |only rgrass-0.5-1/rgrass/tests/testthat.R |only rgrass-0.5-1/rgrass/vignettes/coerce.Rmd | 4 rgrass-0.5-1/rgrass/vignettes/use.Rmd | 6 34 files changed, 1805 insertions(+), 545 deletions(-)
Title: Ordered Beta Regression Models with 'brms'
Description: Implements ordered beta regression models, which are for modeling continuous variables with upper and lower bounds, such as
survey sliders, dose-response relationships and indexes. For more information, see
Kubinec (2023) <doi:10.31235/osf.io/2sx6y>. The package is a front-end to the R package 'brms', which
facilitates a range of regression specifications, including hierarchical, dynamic and
multivariate modeling.
Author: Robert Kubinec [aut, cre]
Maintainer: Robert Kubinec <bobkubinec@gmail.com>
Diff between ordbetareg versions 0.7.2 dated 2023-08-10 and 0.8 dated 2025-02-03
ordbetareg-0.7.2/ordbetareg/data/fit_imputed.rda |only ordbetareg-0.7.2/ordbetareg/inst/doc/package_introduction.Rmd |only ordbetareg-0.7.2/ordbetareg/man/fit_imputed.Rd |only ordbetareg-0.7.2/ordbetareg/vignettes/package_introduction.Rmd |only ordbetareg-0.8/ordbetareg/DESCRIPTION | 25 ordbetareg-0.8/ordbetareg/MD5 | 39 ordbetareg-0.8/ordbetareg/NAMESPACE | 18 ordbetareg-0.8/ordbetareg/NEWS.md | 18 ordbetareg-0.8/ordbetareg/R/distribution.R | 5 ordbetareg-0.8/ordbetareg/R/modeling.R | 685 ++ ordbetareg-0.8/ordbetareg/R/package_info.R | 27 ordbetareg-0.8/ordbetareg/R/plot.R | 362 + ordbetareg-0.8/ordbetareg/build/vignette.rds |binary ordbetareg-0.8/ordbetareg/data/fit_multivariate.rda |binary ordbetareg-0.8/ordbetareg/data/ord_fit_mean.rda |binary ordbetareg-0.8/ordbetareg/data/ord_fit_phi.rda |binary ordbetareg-0.8/ordbetareg/inst/doc/package_introduction.R | 194 ordbetareg-0.8/ordbetareg/inst/doc/package_introduction.html | 2779 +++------- ordbetareg-0.8/ordbetareg/inst/doc/package_introduction.qmd |only ordbetareg-0.8/ordbetareg/man/ordbetareg-package.Rd |only ordbetareg-0.8/ordbetareg/man/ordbetareg.Rd | 36 ordbetareg-0.8/ordbetareg/man/plot_heiss.Rd |only ordbetareg-0.8/ordbetareg/man/posterior_epred_ordbeta.brmsfit.Rd |only ordbetareg-0.8/ordbetareg/man/pp_check_ordbeta.Rd | 9 ordbetareg-0.8/ordbetareg/vignettes/package_introduction.qmd |only 25 files changed, 2312 insertions(+), 1885 deletions(-)
Title: Clean and Analyze Continuous Glucose Monitor Data
Description: This code provides several different functions for cleaning and analyzing continuous glucose monitor data. Currently it works with 'Dexcom', 'iPro 2', 'Diasend', 'Libre', or 'Carelink' data. The cleandata() function takes a directory of CGM data files and prepares them for analysis. cgmvariables() iterates through a directory of cleaned CGM data files and produces a single spreadsheet with data for each file in either rows or columns. The column format of this spreadsheet is compatible with REDCap data upload. cgmreport() also iterates through a directory of cleaned data, and produces PDFs of individual and aggregate AGP plots. Please visit <https://github.com/childhealthbiostatscore/R-Packages/> to download the new-user guide.
Author: Tim Vigers [aut, cre]
Maintainer: Tim Vigers <timothy.vigers@cuanschutz.edu>
Diff between cgmanalysis versions 3.0.1 dated 2025-02-01 and 3.0.2 dated 2025-02-03
DESCRIPTION | 6 - MD5 | 6 - R/cgmvariables.R | 221 +++++++++++++++++++++++++++++----------------------- man/cgmvariables.Rd | 5 - 4 files changed, 135 insertions(+), 103 deletions(-)
More information about tmap.cartogram at CRAN
Permanent link
Title: Retrieving, Organizing, and Analyzing Estuary Monitoring Data
Description: Tools for retrieving, organizing, and analyzing environmental
data from the System Wide Monitoring Program of the National Estuarine
Research Reserve System <https://cdmo.baruch.sc.edu/>. These tools
address common challenges associated with continuous time series data
for environmental decision making.
Author: Marcus W. Beck [aut, cre],
Kimberly Cressman [ctb]
Maintainer: Marcus W. Beck <mbeck@tbep.org>
Diff between SWMPr versions 2.5.1 dated 2024-06-24 and 2.5.2 dated 2025-02-03
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/decomp.R | 2 +- inst/doc/Overview.R | 18 +++++++++--------- inst/doc/Overview.html | 2 +- 6 files changed, 24 insertions(+), 20 deletions(-)
Title: Solving Mixed Model Equations in R
Description: Structural multivariate-univariate linear mixed model solver for estimation of multiple random effects with unknown variance-covariance structures (e.g., heterogeneous and unstructured) and known covariance among levels of random effects (e.g., pedigree and genomic relationship matrices) (Covarrubias-Pazaran, 2016 <doi:10.1371/journal.pone.0156744>; Maier et al., 2015 <doi:10.1016/j.ajhg.2014.12.006>; Jensen et al., 1997). REML estimates can be obtained using the Direct-Inversion Newton-Raphson and Direct-Inversion Average Information algorithms for the problems r x r (r being the number of records) or using the Henderson-based average information algorithm for the problem c x c (c being the number of coefficients to estimate). Spatial models can also be fitted using the two-dimensional spline functionality available.
Author: Giovanny Covarrubias-Pazaran [aut, cre]
Maintainer: Giovanny Covarrubias-Pazaran <cova_ruber@live.com.mx>
Diff between sommer versions 4.3.6 dated 2024-10-20 and 4.3.7 dated 2025-02-03
sommer-4.3.6/sommer/inst/doc/rice_example.R |only sommer-4.3.7/sommer/CHANGELOG | 2 sommer-4.3.7/sommer/DESCRIPTION | 8 sommer-4.3.7/sommer/MD5 | 33 +-- sommer-4.3.7/sommer/R/FUN_utils.R | 2 sommer-4.3.7/sommer/R/GWAS.R | 16 + sommer-4.3.7/sommer/R/mmec.R | 11 - sommer-4.3.7/sommer/R/mmer.R | 18 + sommer-4.3.7/sommer/man/mmec.Rd | 7 sommer-4.3.7/sommer/man/mmer.Rd | 3 sommer-4.3.7/sommer/src/MNR.cpp | 93 +++++----- sommer-4.3.7/sommer/src/RcppExports.cpp | 4 sommer-4.3.7/sommer/vignettes/v1.sommer.quick.start.html | 11 - sommer-4.3.7/sommer/vignettes/v2.sommer.changes.and.faqs.html | 5 sommer-4.3.7/sommer/vignettes/v3.sommer.qg.html | 11 - sommer-4.3.7/sommer/vignettes/v4.sommer.gxe.html | 9 sommer-4.3.7/sommer/vignettes/v5.sommer.vs.lme4.html | 5 sommer-4.3.7/sommer/vignettes/v6.sommer.spatial.html | 5 18 files changed, 135 insertions(+), 108 deletions(-)
Title: High Performance Tools for Combinatorics and Computational
Mathematics
Description: Provides optimized functions and flexible iterators implemented in
C++ for solving problems in combinatorics and computational mathematics.
Handles various combinatorial objects including combinations, permutations,
integer partitions and compositions, Cartesian products, unordered
Cartesian products, and partition of groups. Utilizes the RMatrix class
from 'RcppParallel' for thread safety. The combination and permutation
functions contain constraint parameters that allow for generation of all
results of a vector meeting specific criteria (e.g. finding all
combinations such that the sum is between two bounds). Capable of
ranking/unranking combinatorial objects efficiently (e.g. retrieve only the
nth lexicographical result) which sets up nicely for parallelization as
well as random sampling. Gmp support permits exploration where the total
number of results is large (e.g. comboSample(10000, 500, n = 4)).
Additionally, there are several high performance number theoretic
functions that are [...truncated...]
Author: Joseph Wood [aut, cre]
Maintainer: Joseph Wood <jwood000@gmail.com>
Diff between RcppAlgos versions 2.9.1 dated 2025-01-27 and 2.9.3 dated 2025-02-03
DESCRIPTION | 8 +- MD5 | 64 +++++++++---------- NEWS.md | 12 +++ inst/NEWS.Rd | 18 +++++ inst/doc/CombPermConstraints.Rmd | 44 ++++++------- inst/doc/CombPermConstraints.html | 46 ++++++------- inst/doc/CombinatorialSampling.Rmd | 20 ++--- inst/doc/CombinatorialSampling.html | 22 +++--- inst/doc/CombinatoricsIterators.Rmd | 81 +++++++++++------------- inst/doc/CombinatoricsIterators.html | 107 +++++++++++++++----------------- inst/doc/ComputationalMathematics.Rmd | 38 +++++------ inst/doc/ComputationalMathematics.html | 40 +++++------ inst/doc/GeneralCombinatorics.Rmd | 28 ++++---- inst/doc/GeneralCombinatorics.html | 30 ++++---- inst/doc/HighPerformanceBenchmarks.Rmd | 102 +++++++++++++++--------------- inst/doc/HighPerformanceBenchmarks.html | 104 +++++++++++++++---------------- inst/doc/OtherCombinatorics.Rmd | 22 +++--- inst/doc/OtherCombinatorics.html | 24 +++---- inst/doc/SubsetSum.Rmd | 32 ++++----- inst/doc/SubsetSum.html | 36 +++++----- inst/include/Combinations/ComboCount.h | 4 + src/ComboCount.cpp | 37 ++++++++--- src/ComboGroupsGeneral.cpp | 13 ++- src/NthCombination.cpp | 28 +------- src/RankCombination.cpp | 28 +------- vignettes/CombPermConstraints.Rmd | 44 ++++++------- vignettes/CombinatorialSampling.Rmd | 20 ++--- vignettes/CombinatoricsIterators.Rmd | 81 +++++++++++------------- vignettes/ComputationalMathematics.Rmd | 38 +++++------ vignettes/GeneralCombinatorics.Rmd | 28 ++++---- vignettes/HighPerformanceBenchmarks.Rmd | 102 +++++++++++++++--------------- vignettes/OtherCombinatorics.Rmd | 22 +++--- vignettes/SubsetSum.Rmd | 32 ++++----- 33 files changed, 684 insertions(+), 671 deletions(-)
Title: Define and Enforce Contracts for Dataframes as Function
Parameters
Description: A dataframe validation framework for package builders who use
dataframes as function parameters. It performs checks on column names, coerces
data-types, and checks grouping to make sure user inputs conform to a
specification provided by the package author. It provides a mechanism for
package authors to automatically document supported dataframe inputs and
selectively dispatch to functions depending on the format of a dataframe much
like S3 does for classes. It also contains some developer tools to make
working with and documenting dataframe specifications easier. It helps package
developers to improve their documentation and simplifies parameter validation
where dataframes are used as function parameters.
Author: Robert Challen [aut, cre, cph]
Maintainer: Robert Challen <rob.challen@bristol.ac.uk>
Diff between interfacer versions 0.3.2 dated 2024-11-14 and 0.3.3 dated 2025-02-03
DESCRIPTION | 12 ++++++------ MD5 | 14 +++++++------- NEWS.md | 7 ++++++- R/type-coerce.R | 4 +++- R/utils-functions.R | 7 ++++--- README.md | 19 +++++++++---------- build/vignette.rds |binary inst/doc/nesting.html | 2 +- 8 files changed, 36 insertions(+), 29 deletions(-)
Title: Access Data from the Atlas do Estado Brasileiro
Description: Facilitates access to the data from the Atlas do Estado Brasileiro
(<https://www.ipea.gov.br/atlasestado/>), maintained by the Instituto de
Pesquisa Econômica Aplicada (Ipea). It allows users to search for specific
series, list series or themes, and download data when available.
Author: Hugo Macedo [aut, cre, cph]
Maintainer: Hugo Macedo <aebdata@hhmace.do>
Diff between aebdata versions 0.1.3 dated 2025-01-12 and 0.1.4 dated 2025-02-03
DESCRIPTION | 6 +- MD5 | 8 +-- NEWS.md | 8 +++ inst/doc/exploring-data.html | 90 +++++++++++++++++++++++++++++++++++++++- tests/testthat/_data/search.rds |binary 5 files changed, 104 insertions(+), 8 deletions(-)
Title: Tensors and Neural Networks with 'GPU' Acceleration
Description: Provides functionality to define and train neural networks similar to
'PyTorch' by Paszke et al (2019) <doi:10.48550/arXiv.1912.01703> but written entirely in R
using the 'libtorch' library. Also supports low-level tensor operations and
'GPU' acceleration.
Author: Daniel Falbel [aut, cre, cph],
Javier Luraschi [aut],
Dmitriy Selivanov [ctb],
Athos Damiani [ctb],
Christophe Regouby [ctb],
Krzysztof Joachimiak [ctb],
Hamada S. Badr [ctb],
Sebastian Fischer [ctb],
Maximilian Pichler [ctb],
RStudio [cph]
Maintainer: Daniel Falbel <daniel@rstudio.com>
Diff between torch versions 0.14.0 dated 2025-01-30 and 0.14.1 dated 2025-02-03
DESCRIPTION | 6 MD5 | 18 - NEWS.md | 6 R/install.R | 2 build/partial.rdb |binary inst/doc/tensor-creation.html | 8 inst/doc/torchscript.html | 112 +++++----- inst/include/lantern/lantern.h | 5 inst/po/fr/LC_MESSAGES/R-torch.mo |binary po/R-fr.po | 400 +++++++++++++++++++++++++++++--------- 10 files changed, 393 insertions(+), 164 deletions(-)
Title: Forecasting Using State Space Models
Description: Functions implementing Single Source of Error state space models for purposes of time series analysis and forecasting.
The package includes ADAM (Svetunkov, 2023, <https://openforecast.org/adam/>),
Exponential Smoothing (Hyndman et al., 2008, <doi: 10.1007/978-3-540-71918-2>),
SARIMA (Svetunkov & Boylan, 2019 <doi: 10.1080/00207543.2019.1600764>),
Complex Exponential Smoothing (Svetunkov & Kourentzes, 2018, <doi: 10.13140/RG.2.2.24986.29123>),
Simple Moving Average (Svetunkov & Petropoulos, 2018 <doi: 10.1080/00207543.2017.1380326>)
and several simulation functions. It also allows dealing with intermittent demand based on the
iETS framework (Svetunkov & Boylan, 2019, <doi: 10.13140/RG.2.2.35897.06242>).
Author: Ivan Svetunkov [aut, cre]
Maintainer: Ivan Svetunkov <ivan@svetunkov.com>
Diff between smooth versions 4.1.0 dated 2024-10-01 and 4.1.1 dated 2025-02-03
DESCRIPTION | 10 - MD5 | 112 ++++++++-------- NAMESPACE | 1 NEWS | 15 ++ R/adam-sma.R | 2 R/adam.R | 52 +++++-- R/adamGeneral.R | 22 ++- R/methods.R | 6 R/msdecompose.R | 189 +++++++++++++++++++-------- R/smooth-package.R | 3 R/sowhat.R | 2 R/zzz.R | 8 - README.md | 2 inst/doc/adam.R | 70 +++++----- inst/doc/adam.Rmd | 74 +++++----- inst/doc/adam.html | 333 ++++++++++++++++++++++++------------------------- inst/doc/ces.html | 8 - inst/doc/es.html | 14 +- inst/doc/gum.html | 10 - inst/doc/oes.html | 116 ++++++++--------- inst/doc/simulate.html | 78 +++++------ inst/doc/sma.html | 12 - inst/doc/smooth.html | 4 inst/doc/ssarima.html | 26 +-- man/accuracy.Rd | 2 man/adam.Rd | 4 man/auto.ces.Rd | 2 man/auto.gum.Rd | 2 man/auto.ssarima.Rd | 2 man/ces.Rd | 2 man/cma.Rd | 2 man/es.Rd | 2 man/forecast.smooth.Rd | 2 man/gum.Rd | 2 man/isFunctions.Rd | 2 man/msarima.Rd | 2 man/msdecompose.Rd | 16 ++ man/multicov.Rd | 8 - man/oes.Rd | 2 man/oesg.Rd | 2 man/orders.Rd | 2 man/plot.smooth.Rd | 2 man/pls.Rd | 2 man/reapply.Rd | 2 man/rmultistep.Rd | 2 man/sim.ces.Rd | 2 man/sim.es.Rd | 2 man/sim.gum.Rd | 2 man/sim.oes.Rd | 2 man/sim.sma.Rd | 2 man/sim.ssarima.Rd | 2 man/sma.Rd | 2 man/smooth.Rd | 4 man/smoothCombine.Rd | 2 man/sowhat.Rd | 4 man/ssarima.Rd | 2 vignettes/adam.Rmd | 74 +++++----- 57 files changed, 732 insertions(+), 601 deletions(-)
Title: Sparse-Group SLOPE: Adaptive Bi-Level Selection with FDR Control
Description: Implementation of Sparse-group SLOPE (SGS) (Feser and Evangelou (2023) <doi:10.48550/arXiv.2305.09467>) models. Linear and logistic regression models are supported, both of which can be fit using k-fold cross-validation. Dense and sparse input matrices are supported. In addition, a general Adaptive Three Operator Splitting (ATOS) (Pedregosa and Gidel (2018) <doi:10.48550/arXiv.1804.02339>) implementation is provided. Group SLOPE (gSLOPE) (Brzyski et al. (2019) <doi:10.1080/01621459.2017.1411269>) and group-based OSCAR models (Feser and Evangelou (2024) <doi:10.48550/arXiv.2405.15357>) are also implemented. All models are available with strong screening rules (Feser and Evangelou (2024) <doi:10.48550/arXiv.2405.15357>) for computational speed-up.
Author: Fabio Feser [aut, cre]
Maintainer: Fabio Feser <ff120@ic.ac.uk>
Diff between sgs versions 0.3.2 dated 2024-11-28 and 0.3.3 dated 2025-02-03
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/atos.R | 4 ++-- R/fit_sgs.R | 2 +- R/run_algorithm.R | 8 ++++---- R/utils.R | 8 ++++---- inst/doc/reproducible_example.html | 12 ++++++------ man/fit_sgs.Rd | 2 +- 8 files changed, 29 insertions(+), 29 deletions(-)
Title: Information Preserving Regression-Based Tools for Statistical
Disclosure Control
Description: Implementation of the methods described in the paper with the above title: Langsrud, Ø. (2019) <doi:10.1007/s11222-018-9848-9>. The package can be used to generate synthetic or hybrid continuous microdata, and the relationship to the original data can be controlled in several ways. A function for replacing suppressed tabular cell frequencies with decimal numbers is included.
Author: Oeyvind Langsrud [aut, cre]
Maintainer: Oeyvind Langsrud <oyl@ssb.no>
Diff between RegSDC versions 0.7.0 dated 2022-08-19 and 1.0.0 dated 2025-02-03
DESCRIPTION | 17 +++++++++-------- MD5 | 10 +++++----- R/SuppressDec.R | 10 +++++----- man/ReduceX.Rd | 2 +- man/SuppressDec.Rd | 2 +- man/Z2Yhat.Rd | 4 ++-- 6 files changed, 23 insertions(+), 22 deletions(-)
Title: Local Regression, Likelihood and Density Estimation
Description: Local regression, likelihood and density estimation methods as described in the 1999 book by Loader.
Author: Catherine Loader [aut],
Jiayang Sun [ctb],
Lucent Technologies [cph],
Andy Liaw [cre]
Maintainer: Andy Liaw <andy_liaw@merck.com>
Diff between locfit versions 1.5-9.10 dated 2024-06-24 and 1.5-9.11 dated 2025-02-03
DESCRIPTION | 8 +-- MD5 | 108 ++++++++++++++++++++++++++--------------------------- src/S_enter.c | 71 ++++++++++++++++++++-------------- src/band.c | 64 +++++++++++++++---------------- src/dbinom.c | 52 +++++++------------------ src/dens_haz.c | 23 ++++------- src/dens_int.c | 27 ++++--------- src/dens_odi.c | 88 +++++++++++++++++++++---------------------- src/density.c | 50 +++++++----------------- src/ev_atree.c | 30 ++++---------- src/ev_interp.c | 57 ++++++++++------------------ src/ev_kdtre.c | 46 +++++++--------------- src/ev_main.c | 62 ++++++++++++------------------ src/ev_sphere.c | 15 ++----- src/ev_trian.c | 78 ++++++++++++++------------------------ src/family.c | 104 ++++++++++++++++++++------------------------------- src/fitted.c | 16 ++----- src/frend.c | 15 ++----- src/lf_adap.c | 41 +++++--------------- src/lf_dercor.c | 7 --- src/lf_fitfun.c | 35 +++++------------ src/lf_nbhd.c | 44 ++++++++++----------- src/lf_robust.c | 28 ++++++------- src/lf_vari.c | 24 +++++------ src/lf_wdiag.c | 31 ++++++--------- src/lffuns.h | 6 +- src/lfstr.c | 28 ++++++++----- src/locfit.c | 75 ++++++++++++++++++------------------ src/m_chol.c | 24 +++++------ src/m_eigen.c | 30 +++++++------- src/m_icirc.c | 18 ++++---- src/m_imont.c | 6 +- src/m_isimp.c | 36 ++++++++--------- src/m_isphr.c | 34 ++++++++-------- src/m_jacob.c | 30 +++++++------- src/m_max.c | 27 +++++++------ src/m_qr.c | 24 +++++------ src/m_solve.c | 23 ++++++----- src/m_svd.c | 26 ++++++++---- src/m_vector.c | 49 +++++++++++++----------- src/math.c | 38 +++++++++--------- src/minmax.c | 70 ++++++++++++++++++++-------------- src/mutil.h | 55 ++++++++++++++++++++------- src/pcomp.c | 62 +++++++++++++++++------------- src/preplot.c | 34 ++++++++-------- src/prob.c | 20 ++++----- src/procv.c | 40 +++++++++---------- src/scb.c | 44 ++++++++------------- src/scb_cons.c | 56 +++++++-------------------- src/scb_crit.c | 49 +++++++++--------------- src/scb_iface.c | 15 ++++--- src/simul.c | 48 +++++++---------------- src/smisc.c | 15 ++----- src/startlf.c | 41 ++++++++------------ src/weight.c | 114 +++++++++++++++++++++++--------------------------------- 55 files changed, 1045 insertions(+), 1216 deletions(-)
Title: Dual Feature Reduction for SGL
Description: Implementation of the Dual Feature Reduction (DFR) approach for the Sparse Group Lasso (SGL) and the Adaptive Sparse Group Lasso (aSGL) (Feser and Evangelou (2024) <doi:10.48550/arXiv.2405.17094>). The DFR approach is a feature reduction approach that applies strong screening to reduce the feature space before optimisation, leading to speed-up improvements for fitting SGL (Simon et al. (2013) <doi:10.1080/10618600.2012.681250>) and aSGL (Mendez-Civieta et al. (2020) <doi:10.1007/s11634-020-00413-8> and Poignard (2020) <doi:10.1007/s10463-018-0692-7>) models. DFR is implemented using the Adaptive Three Operator Splitting (ATOS) (Pedregosa and Gidel (2018) <doi:10.48550/arXiv.1804.02339>) algorithm, with linear and logistic SGL models supported, both of which can be fit using k-fold cross-validation. Dense and sparse input matrices are supported.
Author: Fabio Feser [aut, cre]
Maintainer: Fabio Feser <ff120@ic.ac.uk>
Diff between dfr versions 0.1.2 dated 2024-11-28 and 0.1.3 dated 2025-02-03
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/dfr_sgl.R | 2 +- man/dfr_sgl.Rd | 2 +- 4 files changed, 9 insertions(+), 9 deletions(-)
Title: Fast and Simple 'MongoDB' Client for R
Description: High-performance MongoDB client based on 'mongo-c-driver' and 'jsonlite'.
Includes support for aggregation, indexing, map-reduce, streaming, encryption,
enterprise authentication, and GridFS. The online user manual provides an overview
of the available methods in the package: <https://jeroen.github.io/mongolite/>.
Author: Jeroen Ooms [aut, cre] ,
MongoDB, Inc [cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between mongolite versions 3.0.0 dated 2025-01-27 and 3.0.1 dated 2025-02-03
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS | 3 +++ configure | 11 ++--------- src/bson/bson-memory.c | 2 +- 5 files changed, 13 insertions(+), 17 deletions(-)
Title: Less Code, More Results
Description: Each function replaces multiple standard R functions. For example, two function calls, Read() and CountAll(), generate summary statistics for all variables in the data frame, plus histograms and bar charts as appropriate. Other functions provide for summary statistics via pivot tables, a comprehensive regression analysis, ANOVA and t-test, visualizations including the Violin/Box/Scatter plot for a numerical variable, bar chart, histogram, box plot, density curves, calibrated power curve, reading multiple data formats with the same function call, variable labels, time series with aggregation and forecasting, color themes, and Trellis (facet) graphics. Also includes a confirmatory factor analysis of multiple indicator measurement models, pedagogical routines for data simulation such as for the Central Limit Theorem, generation and rendering of regression instructions for interpretative output, and interactive visualizations.
Author: David W. Gerbing [aut, cre]
Maintainer: David W. Gerbing <gerbing@pdx.edu>
Diff between lessR versions 4.4.0 dated 2025-01-12 and 4.4.1 dated 2025-02-03
DESCRIPTION | 8 MD5 | 52 ++-- NEWS.md | 67 ++++- R/BarChart.R | 2 R/Density.R | 1 R/Histogram.R | 6 R/PieChart.R | 12 R/Plot.R | 297 ++++++++++++++---------- R/Regression.R | 22 + R/bc.data.frame.R | 14 - R/bc.main.R | 20 + R/dn.main.R | 15 - R/dpmat.main.R | 42 +-- R/hst.main.R | 61 ++--- R/plt.add.R | 3 R/plt.fit.R | 48 ++- R/plt.lattice.R | 154 +++++++++--- R/plt.main.R | 104 ++++---- R/plt.txt.R | 632 +++++++++++++++++++++------------------------------- R/print.outall.R | 16 - R/reg.5Plot.R | 75 +++--- R/regPlot.R | 12 R/zzz.R | 87 ++++--- inst/doc/intro.html | 38 +-- man/PieChart.Rd | 8 man/Plot.Rd | 58 ++-- man/Regression.Rd | 35 +- 27 files changed, 1025 insertions(+), 864 deletions(-)
Title: A Distributed Worker Launcher Framework
Description: In computationally demanding analysis projects,
statisticians and data scientists asynchronously
deploy long-running tasks to distributed systems,
ranging from traditional clusters to cloud services.
The 'NNG'-powered 'mirai' R package by Gao (2023)
<doi:10.5281/zenodo.7912722> is a sleek
and sophisticated scheduler that
efficiently processes these intense workloads.
The 'crew' package extends 'mirai' with a unifying
interface for third-party worker launchers.
Inspiration also comes from packages.
'future' by Bengtsson (2021) <doi:10.32614/RJ-2021-048>,
'rrq' by FitzJohn and Ashton (2023) <https://github.com/mrc-ide/rrq>,
'clustermq' by Schubert (2019) <doi:10.1093/bioinformatics/btz284>),
and 'batchtools' by Lang, Bischel, and Surmann (2017)
<doi:10.21105/joss.00135>.
Author: William Michael Landau [aut, cre]
,
Daniel Woodie [ctb],
Eli Lilly and Company [cph, fnd]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between crew versions 0.10.2 dated 2024-11-15 and 1.0.0 dated 2025-02-03
crew-0.10.2/crew/tests/local/test-backlog_crash.R |only crew-0.10.2/crew/tests/local/test-backlog_seconds_idle.R |only crew-0.10.2/crew/tests/local/test-backlog_tasks_max.R |only crew-0.10.2/crew/tests/local/test-crashes_error.R |only crew-1.0.0/crew/DESCRIPTION | 10 crew-1.0.0/crew/MD5 | 169 +- crew-1.0.0/crew/NAMESPACE | 6 crew-1.0.0/crew/NEWS.md | 15 crew-1.0.0/crew/R/class_monad.R | 126 - crew-1.0.0/crew/R/crew_assert.R | 11 crew-1.0.0/crew/R/crew_clean.R | 2 crew-1.0.0/crew/R/crew_client.R | 189 +- crew-1.0.0/crew/R/crew_controller.R | 906 +++++++----- crew-1.0.0/crew/R/crew_controller_group.R | 202 +- crew-1.0.0/crew/R/crew_controller_local.R | 40 crew-1.0.0/crew/R/crew_eval.R | 54 crew-1.0.0/crew/R/crew_launcher.R | 759 +++------- crew-1.0.0/crew/R/crew_launcher_local.R | 37 crew-1.0.0/crew/R/crew_options_metrics.R | 2 crew-1.0.0/crew/R/crew_package.R | 4 crew-1.0.0/crew/R/crew_queue.R |only crew-1.0.0/crew/R/crew_relay.R | 14 crew-1.0.0/crew/R/crew_retry.R | 65 crew-1.0.0/crew/R/crew_throttle.R | 180 ++ crew-1.0.0/crew/R/crew_tls.R | 17 crew-1.0.0/crew/R/crew_worker.R | 27 crew-1.0.0/crew/R/utils_logic.R | 2 crew-1.0.0/crew/R/utils_mirai.R | 83 - crew-1.0.0/crew/R/utils_names.R | 13 crew-1.0.0/crew/R/utils_nanonext.R |only crew-1.0.0/crew/inst/WORDLIST | 1 crew-1.0.0/crew/inst/doc/groups.Rmd | 121 + crew-1.0.0/crew/inst/doc/groups.html | 126 + crew-1.0.0/crew/inst/doc/introduction.Rmd | 169 +- crew-1.0.0/crew/inst/doc/introduction.html | 224 +- crew-1.0.0/crew/inst/doc/plugins.Rmd | 110 - crew-1.0.0/crew/inst/doc/plugins.html | 602 +++---- crew-1.0.0/crew/man/crew_class_client.Rd | 54 crew-1.0.0/crew/man/crew_class_controller.Rd | 214 +- crew-1.0.0/crew/man/crew_class_controller_group.Rd | 101 + crew-1.0.0/crew/man/crew_class_launcher.Rd | 470 +----- crew-1.0.0/crew/man/crew_class_launcher_local.Rd | 46 crew-1.0.0/crew/man/crew_class_queue.Rd |only crew-1.0.0/crew/man/crew_class_relay.Rd | 8 crew-1.0.0/crew/man/crew_class_throttle.Rd | 86 + crew-1.0.0/crew/man/crew_class_tls.Rd | 28 crew-1.0.0/crew/man/crew_clean.Rd | 2 crew-1.0.0/crew/man/crew_client.Rd | 24 crew-1.0.0/crew/man/crew_controller.Rd | 41 crew-1.0.0/crew/man/crew_controller_group.Rd | 7 crew-1.0.0/crew/man/crew_controller_local.Rd | 68 crew-1.0.0/crew/man/crew_eval.Rd | 7 crew-1.0.0/crew/man/crew_launcher.Rd | 40 crew-1.0.0/crew/man/crew_launcher_local.Rd | 36 crew-1.0.0/crew/man/crew_options_metrics.Rd | 2 crew-1.0.0/crew/man/crew_queue.Rd |only crew-1.0.0/crew/man/crew_retry.Rd | 6 crew-1.0.0/crew/man/crew_throttle.Rd | 41 crew-1.0.0/crew/man/crew_worker.Rd | 10 crew-1.0.0/crew/tests/local/test-cleanup.R | 2 crew-1.0.0/crew/tests/local/test-crew_clean.R | 2 crew-1.0.0/crew/tests/local/test-crew_relay.R | 8 crew-1.0.0/crew/tests/local/test-crew_throttle.R | 4 crew-1.0.0/crew/tests/local/test-launcher-system2.R | 38 crew-1.0.0/crew/tests/local/test-long_seconds_idle.R |only crew-1.0.0/crew/tests/local/test-long_tasks_max.R |only crew-1.0.0/crew/tests/local/test-map.R | 14 crew-1.0.0/crew/tests/local/test-persistent-autoscale.R | 11 crew-1.0.0/crew/tests/local/test-transient.R | 22 crew-1.0.0/crew/tests/local/test-wait.R | 5 crew-1.0.0/crew/tests/testthat.R | 4 crew-1.0.0/crew/tests/testthat/test-class_monad.R | 35 crew-1.0.0/crew/tests/testthat/test-crew_async.R | 2 crew-1.0.0/crew/tests/testthat/test-crew_client.R | 56 crew-1.0.0/crew/tests/testthat/test-crew_controller.R | 364 +++- crew-1.0.0/crew/tests/testthat/test-crew_controller_group.R | 314 +++- crew-1.0.0/crew/tests/testthat/test-crew_controller_local.R | 140 + crew-1.0.0/crew/tests/testthat/test-crew_eval.R | 73 crew-1.0.0/crew/tests/testthat/test-crew_launcher.R | 361 ++-- crew-1.0.0/crew/tests/testthat/test-crew_launcher_local.R | 203 -- crew-1.0.0/crew/tests/testthat/test-crew_queue.R |only crew-1.0.0/crew/tests/testthat/test-crew_relay.R | 5 crew-1.0.0/crew/tests/testthat/test-crew_throttle.R | 93 + crew-1.0.0/crew/tests/testthat/test-crew_tls.R | 33 crew-1.0.0/crew/tests/testthat/test-crew_worker.R | 104 - crew-1.0.0/crew/tests/testthat/test-plugins.R | 305 +++- crew-1.0.0/crew/tests/testthat/test-utils_mirai.R | 85 + crew-1.0.0/crew/tests/testthat/test-utils_names.R | 20 crew-1.0.0/crew/vignettes/groups.Rmd | 121 + crew-1.0.0/crew/vignettes/introduction.Rmd | 169 +- crew-1.0.0/crew/vignettes/plugins.Rmd | 110 - 91 files changed, 4765 insertions(+), 3515 deletions(-)
Title: Long-Short Term Memory for Time-Series Forecasting, Enhanced
Description: The LSTM (Long Short-Term Memory) model is a Recurrent Neural Network (RNN) based architecture that is widely used for time series forecasting. Customizable configurations for the model are allowed, improving the capabilities and usability of this model compared to other packages. This package is based on 'keras' and 'tensorflow' modules and the algorithm of Paul and Garai (2021) <doi:10.1007/s00500-021-06087-4>.
Author: Jaime Pizarroso Gonzalo [aut, ctb, cre],
Antonio Munoz San Roque [aut]
Maintainer: Jaime Pizarroso Gonzalo <jpizarroso@comillas.edu>
Diff between TSLSTMplus versions 1.0.5 dated 2024-09-06 and 1.0.6 dated 2025-02-03
DESCRIPTION | 12 ++++++------ MD5 | 7 ++++--- NAMESPACE | 2 +- R/TSLSTM.R | 44 +++++++++++++++++++++++++++++++++++++++++++- man/lagmatrix.Rd |only 5 files changed, 54 insertions(+), 11 deletions(-)
Title: Optimising Random Forest Stability by Determining the Optimal
Number of Trees
Description: Calculating the stability of random forest with certain numbers of trees. The non-linear relationship between stability and numbers of trees is described using a logistic regression model and used to estimate the optimal number of trees.
Author: Thomas Martin Lange [cre, aut]
,
Felix Heinrich [ctb]
Maintainer: Thomas Martin Lange <thomas.lange@uni-goettingen.de>
Diff between optRF versions 1.0.1 dated 2024-09-23 and 1.1.0 dated 2025-02-03
DESCRIPTION | 39 - MD5 | 59 +- NEWS.md |only R/SNPdata.R | 46 - R/estimate_numtrees.R | 251 ++++------ R/estimate_stability.R | 179 +++---- R/opt_importance.R | 797 +++++++++++++------------------- R/opt_prediction.R | 941 ++++++++++++++++---------------------- R/plot.opt_importance_object.R | 5 R/plot.opt_prediction_object.R | 5 R/plot_stability.R | 261 +++++----- R/summary.opt_importance_object.R | 6 R/summary.opt_prediction_object.R | 7 R/utils.R |only README.md |only build |only data/SNPdata.rda |binary inst |only man/SNPdata.Rd | 4 man/estimate_numtrees.Rd | 2 man/estimate_stability.Rd | 2 man/opt_importance.Rd | 18 man/opt_prediction.Rd | 15 man/plot_stability.Rd | 2 vignettes |only 25 files changed, 1207 insertions(+), 1432 deletions(-)
Title: Toolkit for Encryption, Signatures and Certificates Based on
OpenSSL
Description: Bindings to OpenSSL libssl and libcrypto, plus custom SSH key parsers.
Supports RSA, DSA and EC curves P-256, P-384, P-521, and curve25519. Cryptographic
signatures can either be created and verified manually or via x509 certificates.
AES can be used in cbc, ctr or gcm mode for symmetric encryption; RSA for asymmetric
(public key) encryption or EC for Diffie Hellman. High-level envelope functions
combine RSA and AES for encrypting arbitrary sized data. Other utilities include key
generators, hash functions (md5, sha1, sha256, etc), base64 encoder, a secure random
number generator, and 'bignum' math methods for manually performing crypto
calculations on large multibyte integers.
Author: Jeroen Ooms [aut, cre] ,
Oliver Keyes [ctb]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between openssl versions 2.3.1 dated 2025-01-09 and 2.3.2 dated 2025-02-03
DESCRIPTION | 6 ++--- MD5 | 18 ++++++++-------- NEWS | 4 +++ inst/doc/bignum.html | 32 ++++++++++++++-------------- inst/doc/crypto_hashing.html | 4 +-- inst/doc/keys.html | 48 +++++++++++++++++++++---------------------- inst/doc/secure_rng.html | 18 ++++++++-------- src/Makevars.win | 2 - src/onload.c | 5 ---- tools/winlibs.R | 6 ++--- 10 files changed, 71 insertions(+), 72 deletions(-)
Title: Easily Access and Maintain Time-Based Versioned Data
(Slowly-Changing-Dimension)
Description: A collection of functions that enable easy access and updating of a database of data over time.
More specifically, the package facilitates type-2 history for data-warehouses and provides a number
of Quality of life improvements for working on SQL databases with R.
For reference see Ralph Kimball and Margy Ross (2013, ISBN 9781118530801).
Author: Rasmus Skytte Randloev [aut, cre, rev]
,
Marcus Munch Gruenewald [aut] ,
Lasse Engbo Christiansen [rev]
,
Sofia Myrup Otero [rev],
Statens Serum Institut [cph, fnd]
Maintainer: Rasmus Skytte Randloev <rske@ssi.dk>
Diff between SCDB versions 0.4.1 dated 2024-10-03 and 0.5.0 dated 2025-02-03
SCDB-0.4.1/SCDB/R/0_linters.R |only SCDB-0.4.1/SCDB/tests/testthat/test-0_linters.R |only SCDB-0.4.1/SCDB/tests/testthat/test-0_rd_files.R |only SCDB-0.5.0/SCDB/DESCRIPTION | 18 SCDB-0.5.0/SCDB/MD5 | 123 +- SCDB-0.5.0/SCDB/NAMESPACE | 7 SCDB-0.5.0/SCDB/NEWS.md | 29 SCDB-0.5.0/SCDB/R/0_miscellaneous.R |only SCDB-0.5.0/SCDB/R/Logger.R | 33 SCDB-0.5.0/SCDB/R/connection.R | 32 SCDB-0.5.0/SCDB/R/create_index.R |only SCDB-0.5.0/SCDB/R/create_table.R | 14 SCDB-0.5.0/SCDB/R/db_joins.R | 134 +- SCDB-0.5.0/SCDB/R/digest_to_checksum.R | 34 SCDB-0.5.0/SCDB/R/filter_keys.R | 10 SCDB-0.5.0/SCDB/R/get_tables.R | 64 - SCDB-0.5.0/SCDB/R/helpers.R | 18 SCDB-0.5.0/SCDB/R/id.R | 10 SCDB-0.5.0/SCDB/R/interlace.R | 86 - SCDB-0.5.0/SCDB/R/locks.R | 2 SCDB-0.5.0/SCDB/R/schema_exists.R | 4 SCDB-0.5.0/SCDB/R/slice_time.R | 4 SCDB-0.5.0/SCDB/R/table_exists.R | 10 SCDB-0.5.0/SCDB/R/unite.tbl_dbi.R | 10 SCDB-0.5.0/SCDB/R/update_snapshot.R | 271 +++-- SCDB-0.5.0/SCDB/R/utils-pipe.R |only SCDB-0.5.0/SCDB/build/vignette.rds |binary SCDB-0.5.0/SCDB/inst/WORDLIST | 6 SCDB-0.5.0/SCDB/inst/doc/SCDB.R | 44 SCDB-0.5.0/SCDB/inst/doc/SCDB.Rmd | 74 - SCDB-0.5.0/SCDB/inst/doc/SCDB.html | 249 ++--- SCDB-0.5.0/SCDB/inst/doc/benchmarks.R |only SCDB-0.5.0/SCDB/inst/doc/benchmarks.Rmd |only SCDB-0.5.0/SCDB/inst/doc/benchmarks.html |only SCDB-0.5.0/SCDB/inst/doc/slowly-changing-dimension.R | 277 +++--- SCDB-0.5.0/SCDB/inst/doc/slowly-changing-dimension.Rmd | 506 +++++------ SCDB-0.5.0/SCDB/inst/doc/slowly-changing-dimension.html | 145 ++- SCDB-0.5.0/SCDB/inst/extdata |only SCDB-0.5.0/SCDB/man/SCDB-package.Rd | 1 SCDB-0.5.0/SCDB/man/create_index.Rd |only SCDB-0.5.0/SCDB/man/interlace.Rd | 13 SCDB-0.5.0/SCDB/man/joins.Rd | 6 SCDB-0.5.0/SCDB/man/pipe.Rd |only SCDB-0.5.0/SCDB/man/slice_time.Rd | 2 SCDB-0.5.0/SCDB/man/unique_table_name.Rd | 8 SCDB-0.5.0/SCDB/man/unite.tbl_dbi.Rd | 4 SCDB-0.5.0/SCDB/tests/spelling.R | 10 SCDB-0.5.0/SCDB/tests/testthat/helper-setup.R | 101 +- SCDB-0.5.0/SCDB/tests/testthat/setup.R | 16 SCDB-0.5.0/SCDB/tests/testthat/test-Logger.R | 50 - SCDB-0.5.0/SCDB/tests/testthat/test-connection.R | 6 SCDB-0.5.0/SCDB/tests/testthat/test-create_logs_if_missing.R | 8 SCDB-0.5.0/SCDB/tests/testthat/test-create_table.R | 16 SCDB-0.5.0/SCDB/tests/testthat/test-db_joins.R | 187 ++-- SCDB-0.5.0/SCDB/tests/testthat/test-digest_to_checksum.R | 32 SCDB-0.5.0/SCDB/tests/testthat/test-filter_keys.R | 64 - SCDB-0.5.0/SCDB/tests/testthat/test-getTableSignature.R | 2 SCDB-0.5.0/SCDB/tests/testthat/test-get_table.R | 20 SCDB-0.5.0/SCDB/tests/testthat/test-get_tables.R | 16 SCDB-0.5.0/SCDB/tests/testthat/test-helpers.R | 28 SCDB-0.5.0/SCDB/tests/testthat/test-id.R | 4 SCDB-0.5.0/SCDB/tests/testthat/test-interlace.R | 16 SCDB-0.5.0/SCDB/tests/testthat/test-locks.R | 10 SCDB-0.5.0/SCDB/tests/testthat/test-slice_time.R | 16 SCDB-0.5.0/SCDB/tests/testthat/test-unite.tbl_dbi.R | 58 - SCDB-0.5.0/SCDB/tests/testthat/test-update_snapshot.R | 475 +++++++--- SCDB-0.5.0/SCDB/vignettes/SCDB.Rmd | 74 - SCDB-0.5.0/SCDB/vignettes/benchmarks.Rmd |only SCDB-0.5.0/SCDB/vignettes/slowly-changing-dimension.Rmd | 506 +++++------ 69 files changed, 2297 insertions(+), 1666 deletions(-)
Title: Extended Mixed Models Using Latent Classes and Latent Processes
Description: Estimation of various extensions of the mixed models including latent class mixed models, joint latent class mixed models, mixed models for curvilinear outcomes, mixed models for multivariate longitudinal outcomes using a maximum likelihood estimation method (Proust-Lima, Philipps, Liquet (2017) <doi:10.18637/jss.v078.i02>).
Author: Cecile Proust-Lima [aut, cre],
Viviane Philipps [aut],
Amadou Diakite [ctb],
Benoit Liquet [ctb],
Alan Genz [ctb] ,
John Burkardt [ctb]
Maintainer: Cecile Proust-Lima <cecile.proust-lima@inserm.fr>
Diff between lcmm versions 2.1.0 dated 2023-10-06 and 2.2.0 dated 2025-02-03
DESCRIPTION | 20 MD5 | 82 +- NAMESPACE | 3 NEWS.md | 7 R/Jointlcmm.R | 20 R/externVar.R | 1515 +++++++++++++++++++++++++------------------------ R/hlme.R | 7 R/lcmm-package.R | 6 R/lcmm.R | 14 R/mpjlcmm.R | 5 R/multlcmm.R | 34 - R/permut.R | 32 + R/predictClass.R | 3 R/predictYback.R |only R/print.lcmm.R | 2 R/summary.externSurv.R | 229 +++---- R/summary.externX.R | 20 R/summary.hlme.R | 649 ++++++++++---------- R/summary.lcmm.R | 15 R/summary.multlcmm.R | 12 R/summaryplot.R | 4 R/summarytable.R | 4 README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/COPYRIGHTS |only inst/doc/lcmm.R | 2 man/Jointlcmm.Rd | 18 man/externVar.Rd | 195 +++--- man/hlme.Rd | 7 man/lcmm-package.Rd | 9 man/lcmm.Rd | 14 man/mpjlcmm.Rd | 2 man/multlcmm.Rd | 22 man/predictYback.Rd |only man/print.lcmm.Rd | 2 man/summary.lcmm.Rd | 2 man/summaryplot.Rd | 4 man/summarytable.Rd | 4 src/Integ.f90 |only src/Makevars | 3 src/init.c | 1 src/lcmm.h | 19 src/mpjhet.f90 | 4 44 files changed, 1609 insertions(+), 1384 deletions(-)
Title: Remote Sensing Data Analysis
Description: Toolbox for remote sensing image processing and analysis such as
calculating spectral indexes, principal component transformation, unsupervised
and supervised classification or fractional cover analyses.
Author: Benjamin Leutner [aut] ,
Ned Horning [aut],
Jakob Schwalb-Willmann [aut] ,
Robert J. Hijmans [ctb] ,
Konstantin Mueller [aut, cre]
Maintainer: Konstantin Mueller <konstantinfinn.mueller@gmx.de>
Diff between RStoolbox versions 1.0.1 dated 2025-02-01 and 1.0.2.1 dated 2025-02-03
RStoolbox-1.0.1/RStoolbox/src/tinyexpr.c |only RStoolbox-1.0.1/RStoolbox/src/tinyexpr.h |only RStoolbox-1.0.2.1/RStoolbox/DESCRIPTION | 8 RStoolbox-1.0.2.1/RStoolbox/MD5 | 14 RStoolbox-1.0.2.1/RStoolbox/NEWS.md | 6 RStoolbox-1.0.2.1/RStoolbox/R/spectralIndices.R | 7 RStoolbox-1.0.2.1/RStoolbox/man/spectralIndices.Rd | 27 + RStoolbox-1.0.2.1/RStoolbox/src/spectralIndices.cpp | 188 +++++++--- RStoolbox-1.0.2.1/RStoolbox/tests/testthat/test-spectralIndices.R | 19 + 9 files changed, 214 insertions(+), 55 deletions(-)
Title: Analysis of Heavy Tailed Distributions
Description: An implementation of maximum likelihood estimators for a
variety of heavy tailed distributions, including both the discrete and
continuous power law distributions. Additionally, a goodness-of-fit
based approach is used to estimate the lower cut-off for the scaling
region.
Author: Colin Gillespie [aut, cre]
Maintainer: Colin Gillespie <csgillespie@gmail.com>
Diff between poweRlaw versions 0.80.0 dated 2024-01-25 and 1.0.0 dated 2025-02-03
DESCRIPTION | 27 ++++----- MD5 | 83 ++++++++++++++------------- NAMESPACE | 15 ----- NEWS.md | 13 ++-- R/bootstrap.R | 4 - R/bootstrap_p.R | 18 +++--- R/compare_distributions.R | 7 +- R/conlnorm.R | 6 +- R/data_help_files.R | 2 R/def_conweibull.R | 2 R/def_dislnorm.R | 3 + R/def_displ.R | 5 - R/def_dispois.R | 17 ++--- R/estimate_xmin.R | 6 -- R/lines_methods.R | 6 -- R/plcon.R | 4 - R/pldis.R | 6 +- R/plot_methods.R | 18 ++---- R/powerlaw-package.R | 1 R/show_methods.R | 4 - README.md | 13 +++- build/vignette.rds |binary demo/moby.R | 6 +- inst/WORDLIST |only inst/doc/a_introduction.pdf |binary inst/doc/b_powerlaw_examples.pdf |binary inst/doc/c_comparing_distributions.pdf |binary inst/doc/d_jss_paper.pdf |binary man/bootstrap_moby.Rd | 2 man/compare_distributions.Rd | 2 man/displ.Rd | 3 + man/dplcon.Rd | 4 - man/estimate_xmin.Rd | 4 - man/plot-distribution-method.Rd | 2 man/poweRlaw-package.Rd | 1 tests/testthat/test_compare_distributions.R | 16 ++--- tests/testthat/test_dist_cdf.R | 84 ++++++++++++++-------------- tests/testthat/test_dist_data_cdf.R | 29 ++++----- tests/testthat/test_dist_ll.R | 26 ++++---- tests/testthat/test_estimate_pars.R | 24 ++++---- tests/testthat/test_estimate_xmin.R | 32 +++++----- tests/testthat/test_get_sims.R | 8 +- tests/testthat/test_plot.R | 36 ++++++------ 43 files changed, 263 insertions(+), 276 deletions(-)
Title: Classification Evaluation Metrics
Description: A fast, robust and easy-to-use calculation
of multi-class classification evaluation metrics based on confusion matrix.
Author: G. Dudnik [aut, cre, cph]
Maintainer: G. Dudnik <gl.dudnik@gmail.com>
Diff between mltest versions 1.0.2 dated 2025-02-02 and 1.0.3 dated 2025-02-03
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 10 +++++++++- R/ml_test.R | 50 +++++++++++++++++++++++++------------------------- build/partial.rdb |binary inst/CITATION | 3 ++- man/ml_test.Rd | 50 +++++++++++++++++++++++++------------------------- 7 files changed, 70 insertions(+), 61 deletions(-)
Title: SDTM Datacut
Description: Supports the process of applying a cut to Standard Data Tabulation Model (SDTM),
as part of the analysis of specific points in time of the data, normally as part of
investigation into clinical trials. The functions support different approaches of
cutting to the different domains of SDTM normally observed.
Author: Tim Barnett [cph, aut, cre],
Nathan Rees [aut],
Alana Harris [aut],
Cara Andrews [aut]
Maintainer: Tim Barnett <timothy.barnett@roche.com>
Diff between datacutr versions 0.2.2 dated 2025-01-10 and 0.2.3 dated 2025-02-03
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 5 +++++ R/read_out.R | 4 +++- inst/doc/variable_cut.html | 24 ++++++++++++------------ 5 files changed, 27 insertions(+), 20 deletions(-)
Title: 3D Software Rasterizer
Description: Rasterize images using a 3D software renderer. 3D scenes are created either by importing external files, building scenes out of the included objects, or by constructing meshes manually. Supports point and directional lights, anti-aliased lines, shadow mapping, transparent objects, translucent objects, multiple materials types, reflection, refraction, environment maps, multicore rendering, bloom, tone-mapping, and screen-space ambient occlusion.
Author: Tyler Morgan-Wall [aut, cph, cre]
,
Syoyo Fujita [ctb, cph],
Vilya Harvey [ctb, cph],
G-Truc Creation [ctb, cph],
Sean Barrett [ctb, cph]
Maintainer: Tyler Morgan-Wall <tylermw@gmail.com>
Diff between rayvertex versions 0.11.4 dated 2024-07-22 and 0.12.0 dated 2025-02-03
DESCRIPTION | 14 ++--- MD5 | 20 +++---- R/objects.R | 118 ++++++++++++++++++++++++++-------------------- R/zzz.R | 2 inst/extdata/xy_plane.txt | 6 +- inst/extdata/yz_plane.txt | 2 man/text3d_mesh.Rd | 66 +++++++++++++++++++------ src/glm/detail/glm.cpp | 23 ++++++++ src/glm/glm.hpp | 23 ++++++++ src/load_obj.cpp | 17 +++++- src/load_ply.cpp | 17 +++++- 11 files changed, 214 insertions(+), 94 deletions(-)
Title: A Collection of R Functions by the Petersen Lab
Description: A collection of R functions that are widely used by the Petersen
Lab. Included are functions for various purposes, including evaluating the
accuracy of judgments and predictions, performing scoring of assessments,
generating correlation matrices, conversion of data between various types,
data management, psychometric evaluation, extensions related to latent
variable modeling, various plotting capabilities, and other miscellaneous
useful functions. By making the package available, we hope to make our
methods reproducible and replicable by others and to help others perform
their data processing and analysis methods more easily and efficiently. The
codebase is provided in Petersen (2024) <doi:10.5281/zenodo.7602890> and on
CRAN: <doi: 10.32614/CRAN.package.petersenlab>. The package is described in
"Principles of Psychological Assessment: With Applied Examples in R"
(Petersen, 2024, 2025) <doi:10.1201/9781003357421>,
<doi:10.25820/work.007199>, <doi:10.5281/zenod [...truncated...]
Author: Isaac T. Petersen [aut, cre] ,
Developmental Psychopathology Lab at the University of Iowa [ctb],
Angela D. Staples [ctb] ,
Johanna Caskey [ctb] ,
Philipp Doebler [ctb] ,
Loreen Sabel [ctb]
Maintainer: Isaac T. Petersen <isaac-t-petersen@uiowa.edu>
Diff between petersenlab versions 1.0.0 dated 2024-04-30 and 1.1.0 dated 2025-02-03
DESCRIPTION | 41 +- MD5 | 109 +++-- NAMESPACE | 42 ++ R/accuracyOverall.R | 52 ++ R/apa.R |only R/cleanUpNames.R |only R/convert.magic.R | 2 R/frequencyPerDuration.R | 18 R/itemInformationZINB.R |only R/my_loadings_sorter.R |only R/nomogrammer.R | 104 ++++- R/pValues.R | 2 R/posttestOddsProbability.R |only R/recodeIntensity.R | 5 R/semPlotInteraction.R |only R/specifyDecimals.R | 2 R/suppressLeadingZero.R | 2 R/testInformation.R |only R/varsDifferentTypes.R |only R/weightedQuantile.R |only README.md | 20 - inst/CITATION | 6 man/Mode.Rd | 93 ++--- man/accuracyAtCutoff.Rd | 3 man/accuracyAtEachCutoff.Rd | 3 man/accuracyOverall.Rd | 7 man/addText.Rd | 1 man/apa.Rd |only man/bayesTheorem.Rd | 4 man/cleanUpNames.Rd |only man/columnBindFill.Rd | 3 man/convert.magic.Rd | 5 man/discriminationToFactorLoading.Rd | 4 man/dropColsWithAllNA.Rd | 109 ++--- man/dropRowsWithAllNA.Rd | 105 ++--- man/equiv_chi.Rd | 3 man/figures |only man/fourPL.Rd | 4 man/frequencyPerDuration.Rd | 20 - man/itemInformation.Rd | 4 man/itemInformationZINB.Rd |only man/lmCombine.Rd | 1 man/make_esem_model.Rd | 3 man/meanSum.Rd | 71 +-- man/mySum.Rd | 75 ++-- man/my_loadings_sorter.Rd |only man/nomogrammer.Rd | 221 ++++++------ man/optimalCutoff.Rd | 3 man/pValue.Rd | 7 man/plot2WayInteraction.Rd | 2 man/posttest.Rd |only man/ppPlot.Rd | 2 man/puc.Rd | 3 man/recodeBehaviorIntensity.Rd | 5 man/reliabilityIRT.Rd | 4 man/satorraBentlerScaledChiSquareDifferenceTestStatistic.Rd | 3 man/semPlotInteraction.Rd |only man/specify_decimal.Rd | 7 man/standardErrorIRT.Rd | 4 man/suppressLeadingZero.Rd | 7 man/testInformation.Rd |only man/update_nested.Rd | 3 man/varsDifferentTypes.Rd |only man/vwReg.Rd | 3 man/weightedQuantile.Rd |only 65 files changed, 754 insertions(+), 443 deletions(-)
Title: Ordered Correlation Forest
Description: Machine learning estimator specifically optimized for predictive modeling of ordered non-numeric outcomes. 'ocf' provides forest-based estimation of the
conditional choice probabilities and the covariates’ marginal effects. Under an "honesty" condition, the estimates are consistent and asymptotically normal
and standard errors can be obtained by leveraging the weight-based representation of the random forest predictions. Please reference the use as Di Francesco (2025)
<doi:10.1080/07474938.2024.2429596>.
Author: Riccardo Di Francesco [aut, cre, cph]
Maintainer: Riccardo Di Francesco <difrancesco.riccardo96@gmail.com>
Diff between ocf versions 1.0.1 dated 2024-09-25 and 1.0.3 dated 2025-02-03
DESCRIPTION | 15 +- MD5 | 62 +++++------ NAMESPACE | 6 + NEWS.md | 13 ++ R/checks.R | 5 R/generic-s3.R | 119 ++++++++++++++++++++- R/marginal-effects.R | 82 ++++++++------- R/multinomial-ml.R | 2 R/ocf.R | 9 - R/ordered-ml.R | 2 R/utils.R | 4 README.md | 14 +- build/partial.rdb |only build/vignette.rds |binary inst/doc/ocf-short-tutorial.R | 13 ++ inst/doc/ocf-short-tutorial.Rmd | 18 ++- inst/doc/ocf-short-tutorial.html | 211 +++++++++++++++++++++------------------ man/generate_ordered_data.Rd | 2 man/marginal_effects.Rd | 21 ++- man/multinomial_ml.Rd | 2 man/ocf.Rd | 9 - man/ordered_ml.Rd | 2 man/plot.ocf.marginal.Rd |only man/predict.mml.Rd | 2 man/predict.ocf.Rd | 2 man/predict.ocf.forest.Rd | 2 man/predict.oml.Rd | 2 man/print.ocf.Rd | 2 man/print.ocf.marginal.Rd | 4 man/summary.ocf.Rd | 2 man/summary.ocf.marginal.Rd | 2 man/tree_info.Rd | 2 vignettes/ocf-short-tutorial.Rmd | 18 ++- 33 files changed, 425 insertions(+), 224 deletions(-)
Title: Nested Data Summary, Adverse Events and REDCap
Description: Tools and code snippets for summarizing nested data, adverse events
and REDCap study information.
Author: Lisa Avery [aut] ,
Zeynep Baskurt [aut],
Osvaldo Espin-Garcia [aut],
Katrina Hueniken [aut],
Katherine Lajkosz [aut] ,
Xuan Li [aut],
Tyler Pittman [cre, aut] ,
Anna Santiago [aut] ,
Jessica Weiss [aut],
Wei Xu [aut]
Maintainer: Tyler Pittman <tyler.pittman@uhn.ca>
Diff between BiostatsUHNplus versions 1.0.1 dated 2024-12-06 and 1.0.2 dated 2025-02-03
DESCRIPTION | 6 MD5 | 74 +-- NEWS.md | 4 R/ae_timeline_plot.R | 20 - R/covsum_nested.R | 4 R/dsmb_ccru.R | 2 R/redcap_data_out.R | 21 - README.md | 193 +--------- man/ae_timeline_plot.Rd | 20 - man/covsum_nested.Rd | 2 man/dsmb_ccru.Rd | 2 man/figures/ae_category_attribStart_timeline_plot.png |binary man/figures/ae_category_timeline_plot.png |binary man/figures/ae_detail_timeline_plot.png |binary man/figures/ana10-1.png |binary man/figures/caterpillar_plot_Cows_Model.png |binary man/figures/caterpillar_plot_Yards_Model.png |binary man/figures/caterpillar_plot_ae_category.png |binary man/figures/caterpillar_plot_subject.png |binary man/figures/variance_pie_plot.png |binary man/redcap_data_out.Rd | 8 man/rm_covsum_nested.Rd | 2 man/tables/ae_detail_EXAMPLE_STUDY_Cohort_A_30OCT2020.xlsx |binary man/tables/ae_detail_EXAMPLE_STUDY_Cohort_B_30OCT2020.xlsx |binary man/tables/ae_detail_EXAMPLE_STUDY_Cohort_C_30OCT2020.xlsx |binary man/tables/ae_detail_EXAMPLE_STUDY_Cohort_D_30OCT2020.xlsx |binary man/tables/ae_detail_EXAMPLE_STUDY__30OCT2020.xlsx |binary man/tables/category_ByEvent_EXAMPLE_STUDY_Cohort_A_30OCT2020.xlsx |binary man/tables/category_ByEvent_EXAMPLE_STUDY_Cohort_B_30OCT2020.xlsx |binary man/tables/category_ByEvent_EXAMPLE_STUDY_Cohort_C_30OCT2020.xlsx |binary man/tables/category_ByEvent_EXAMPLE_STUDY_Cohort_D_30OCT2020.xlsx |binary man/tables/category_ByEvent_EXAMPLE_STUDY__30OCT2020.xlsx |binary man/tables/category_BySubject_EXAMPLE_STUDY_Cohort_A_30OCT2020.xlsx |binary man/tables/category_BySubject_EXAMPLE_STUDY_Cohort_B_30OCT2020.xlsx |binary man/tables/category_BySubject_EXAMPLE_STUDY_Cohort_C_30OCT2020.xlsx |binary man/tables/category_BySubject_EXAMPLE_STUDY_Cohort_D_30OCT2020.xlsx |binary man/tables/category_BySubject_EXAMPLE_STUDY__30OCT2020.xlsx |binary tests/testthat/test_calculations.R | 18 38 files changed, 127 insertions(+), 249 deletions(-)
More information about BiostatsUHNplus at CRAN
Permanent link
Title: Quick and Essential 'R' Tricks for Better Scripts
Description: The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to improve your scripts. Improve the quality and reproducibility of 'R' scripts.
Author: Obinna Obianom [aut, cre],
Brice Richard [aut]
Maintainer: Obinna Obianom <idonshayo@gmail.com>
Diff between quickcode versions 1.0.4 dated 2025-01-14 and 1.0.5 dated 2025-02-03
quickcode-1.0.4/quickcode/R/mult.R |only quickcode-1.0.4/quickcode/R/randomImage.R |only quickcode-1.0.4/quickcode/man/genRandImg.Rd |only quickcode-1.0.4/quickcode/man/multiply.Rd |only quickcode-1.0.4/quickcode/man/sort_length.Rd |only quickcode-1.0.5/quickcode/DESCRIPTION | 6 - quickcode-1.0.5/quickcode/MD5 | 32 ++--- quickcode-1.0.5/quickcode/NAMESPACE | 6 - quickcode-1.0.5/quickcode/NEWS.md | 6 + quickcode-1.0.5/quickcode/R/0.7_combo_func1.R | 4 quickcode-1.0.5/quickcode/R/categorical_to_numeric.R |only quickcode-1.0.5/quickcode/R/clean.R | 4 quickcode-1.0.5/quickcode/R/func_chain.R | 4 quickcode-1.0.5/quickcode/R/sort.R | 38 ++++++- quickcode-1.0.5/quickcode/inst/doc/add_today_date_to_filenames_quickcode.html | 54 +++++----- quickcode-1.0.5/quickcode/inst/doc/nullish_coalescing_operator_r.html | 4 quickcode-1.0.5/quickcode/inst/doc/quickcode_r_introduction.html | 4 quickcode-1.0.5/quickcode/inst/doc/track_function_usage_r.html | 4 quickcode-1.0.5/quickcode/man/categorical_to_numeric.Rd |only quickcode-1.0.5/quickcode/man/clearenvironment.Rd | 3 quickcode-1.0.5/quickcode/man/sort-additives.Rd |only 21 files changed, 106 insertions(+), 63 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-12-11 1.2.6
2023-12-09 1.2.5
2018-01-23 1.2.4
2018-01-07 1.2.3
2017-10-17 1.2.2
2016-07-21 1.2.1
2016-07-17 1.2
2016-07-10 1.1.1
2016-01-25 1.1
2015-12-07 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-10-22 2.3.2
2024-05-29 2.3.1
2024-04-08 2.3
2023-08-24 2.2
2023-03-22 2.1
2023-01-06 2.0
2022-12-09 1.12
2022-10-04 1.11
2022-01-04 1.9
2021-12-21 1.8.4
2021-09-07 1.8.2
2021-05-04 1.8.1