Title: Fit Dynamic Structural Equation Models
Description: Applies dynamic structural equation models to time-series data
with generic and simplified specification for simultaneous and lagged
effects. Methods are described in Thorson et al. (2024)
"Dynamic structural equation models synthesize ecosystem dynamics
constrained by ecological mechanisms."
Author: James Thorson [aut, cre] ,
Maurice Goodman [ctb] ,
Wouter van der Bijl [ctb]
Maintainer: James Thorson <James.Thorson@noaa.gov>
Diff between dsem versions 1.4.1 dated 2025-02-01 and 1.5.0 dated 2025-02-12
DESCRIPTION | 22 + MD5 | 50 ++- NAMESPACE | 8 NEWS.md | 12 R/dsem.R | 35 +- R/dsemRTMB.R | 13 R/make_dsem_ram.R | 9 R/make_matrices.R | 7 R/read_model.R | 2 R/stepwise_selection.R | 37 ++ R/test_dsep.R |only R/utility.R | 54 ++++ build/vignette.rds |binary inst/doc/spatial_diffusion.R |only inst/doc/spatial_diffusion.Rmd |only inst/doc/spatial_diffusion.html |only inst/doc/vignette.R | 9 inst/doc/vignette.Rmd | 13 inst/doc/vignette.html | 475 ++++++++++++++++++------------------ man/dsem.Rd | 6 man/dsemRTMB.Rd | 6 man/make_dsem_ram.Rd | 2 man/stepwise_selection.Rd | 30 ++ man/test_dsep.Rd |only man/total_effect.Rd |only src/dsem.cpp | 2 tests/testthat/test-distributions.R |only tests/testthat/test-platform.R | 1 vignettes/spatial_diffusion.Rmd |only vignettes/vignette.Rmd | 13 30 files changed, 510 insertions(+), 296 deletions(-)
Title: Access and Import WMS and WFS Data from Argentine Organizations
Description: Provides functions to retrieve information from Web Feature Service (WFS) and Web Map Service (WMS) layers
from various Argentine organizations and import them into R for further analysis.
WFS and WMS are standardized protocols for serving georeferenced map data over the internet.
For more information on these services, see <https://www.ogc.org/publications/standard/wfs/> and <https://www.ogc.org/publications/standard/wms/>.
Author: Thomas Artopoulos [aut, cre]
Maintainer: Thomas Artopoulos <thomas.artopoulos@gmail.com>
Diff between Argentum versions 0.5.1 dated 2024-09-30 and 1.0.0 dated 2025-02-12
DESCRIPTION | 20 ++++---- MD5 | 35 ++++++++++---- NAMESPACE | 2 R/download_layers.R |only R/interactive_download.R |only README.md |only build |only inst |only man/argentum_download_layers.Rd |only man/argentum_get_capabilities.Rd | 58 +++++++++++------------ man/argentum_import_wfs_layer.Rd | 58 +++++++++++------------ man/argentum_interactive_download.Rd |only man/argentum_interactive_import.Rd | 38 +++++++-------- man/argentum_list_layers.Rd | 68 +++++++++++++-------------- man/argentum_list_organizations.Rd | 28 +++++------ man/argentum_select_organization.Rd | 72 ++++++++++++++--------------- man/clean_url.Rd | 36 +++++++------- tests/testthat.R | 24 ++++----- tests/testthat/test-interactive-download.r |only vignettes |only 20 files changed, 230 insertions(+), 209 deletions(-)
Title: A Fast, Flexible Tool for Sorting Phylogenetic Trees
Description: Screens and sorts phylogenetic trees in both traditional and
extended Newick format. Allows for the fast and flexible screening (within
a tree) of Exclusive clades that comprise only the target taxa and/or Non-
Exclusive clades that includes a defined portion of non-target taxa.
Author: Timothy Stephens [aut, cre, trl] ,
Debashish Bhattacharya [aut],
Mark Ragan [aut],
Cheong Xin Chan [aut, cph]
Maintainer: Timothy Stephens <timothy.stephens1@uqconnect.edu.au>
Diff between PhySortR versions 1.0.8 dated 2018-08-06 and 1.0.9 dated 2025-02-12
DESCRIPTION | 14 ++++----- MD5 | 10 +++--- NAMESPACE | 1 R/sortTrees.R | 83 ++++++++++++++++++++++++++++++++++++++++++++++--------- man/PhySortR.Rd | 8 ----- man/sortTrees.Rd | 38 ++++++++++++++++++++++--- 6 files changed, 118 insertions(+), 36 deletions(-)
Title: Satellite Image Time Series Analysis for Earth Observation Data
Cubes
Description: An end-to-end toolkit for land use and land cover classification
using big Earth observation data. Builds satellite image data cubes from cloud collections.
Supports visualization methods for images and time series and
smoothing filters for dealing with noisy time series.
Includes functions for quality assessment of training samples using self-organized maps and
to reduce training samples imbalance. Provides machine learning algorithms including support vector machines,
random forests, extreme gradient boosting, multi-layer perceptrons,
temporal convolution neural networks, and temporal attention encoders.
Performs efficient classification of big Earth observation data cubes and includes
functions for post-classification smoothing based on Bayesian inference.
Enables best practices for estimating area and assessing accuracy of land change.
Minimum recommended requirements: 16 GB RAM and 4 CPU dual-core.
Author: Rolf Simoes [aut],
Gilberto Camara [aut, cre, ths],
Felipe Souza [aut],
Felipe Carlos [aut],
Lorena Santos [ctb],
Karine Ferreira [ctb, ths],
Charlotte Pelletier [ctb],
Pedro Andrade [ctb],
Alber Sanchez [ctb],
Estefania Pizarro [ctb],
Gilberto Queir [...truncated...]
Maintainer: Gilberto Camara <gilberto.camara.inpe@gmail.com>
Diff between sits versions 1.5.1 dated 2024-08-19 and 1.5.2 dated 2025-02-12
sits-1.5.1/sits/R/api_raster_terra.R |only sits-1.5.1/sits/R/api_s2tile.R |only sits-1.5.1/sits/R/api_tmap_v3.R |only sits-1.5.1/sits/R/sits_active_learning.R |only sits-1.5.1/sits/inst/extdata/detect_change |only sits-1.5.1/sits/inst/extdata/s2-tiles |only sits-1.5.1/sits/src/Makevars |only sits-1.5.1/sits/tests/testthat/Rplots.pdf |only sits-1.5.2/sits/DESCRIPTION | 112 - sits-1.5.2/sits/MD5 | 417 ++-- sits-1.5.2/sits/NAMESPACE | 91 sits-1.5.2/sits/NEWS.md | 21 sits-1.5.2/sits/R/RcppExports.R | 16 sits-1.5.2/sits/R/api_accuracy.R | 65 sits-1.5.2/sits/R/api_apply.R | 5 sits-1.5.2/sits/R/api_bayts.R |only sits-1.5.2/sits/R/api_check.R | 179 + sits-1.5.2/sits/R/api_chunks.R | 23 sits-1.5.2/sits/R/api_classify.R | 95 sits-1.5.2/sits/R/api_colors.R | 24 sits-1.5.2/sits/R/api_combine_predictions.R | 10 sits-1.5.2/sits/R/api_conf.R | 78 sits-1.5.2/sits/R/api_crop.R | 74 sits-1.5.2/sits/R/api_csv.R | 45 sits-1.5.2/sits/R/api_cube.R | 281 ++ sits-1.5.2/sits/R/api_data.R | 179 + sits-1.5.2/sits/R/api_detect_change.R |only sits-1.5.2/sits/R/api_download.R | 222 -- sits-1.5.2/sits/R/api_dtw.R |only sits-1.5.2/sits/R/api_gdal.R | 57 sits-1.5.2/sits/R/api_gdalcubes.R | 26 sits-1.5.2/sits/R/api_grid.R |only sits-1.5.2/sits/R/api_jobs.R | 81 sits-1.5.2/sits/R/api_kohonen.R | 12 sits-1.5.2/sits/R/api_mask.R |only sits-1.5.2/sits/R/api_merge.R | 368 +++ sits-1.5.2/sits/R/api_ml_model.R | 30 sits-1.5.2/sits/R/api_mosaic.R | 19 sits-1.5.2/sits/R/api_plot_raster.R | 330 +-- sits-1.5.2/sits/R/api_plot_time_series.R | 4 sits-1.5.2/sits/R/api_plot_vector.R | 8 sits-1.5.2/sits/R/api_preconditions.R |only sits-1.5.2/sits/R/api_raster.R | 501 +++- sits-1.5.2/sits/R/api_raster_sub_image.R | 16 sits-1.5.2/sits/R/api_regularize.R | 293 ++ sits-1.5.2/sits/R/api_request_httr2.R | 13 sits-1.5.2/sits/R/api_roi.R | 25 sits-1.5.2/sits/R/api_samples.R | 15 sits-1.5.2/sits/R/api_sf.R | 40 sits-1.5.2/sits/R/api_smooth.R | 53 sits-1.5.2/sits/R/api_som.R | 100 sits-1.5.2/sits/R/api_source.R | 20 sits-1.5.2/sits/R/api_source_hls.R | 68 sits-1.5.2/sits/R/api_source_mpc.R | 7 sits-1.5.2/sits/R/api_source_sdc.R | 39 sits-1.5.2/sits/R/api_space_time_operations.R | 29 sits-1.5.2/sits/R/api_stac.R | 19 sits-1.5.2/sits/R/api_tile.R | 30 sits-1.5.2/sits/R/api_timeline.R | 23 sits-1.5.2/sits/R/api_tmap.R | 391 +++ sits-1.5.2/sits/R/api_torch.R | 133 - sits-1.5.2/sits/R/api_ts.R | 14 sits-1.5.2/sits/R/api_uncertainty.R | 2 sits-1.5.2/sits/R/api_utils.R | 17 sits-1.5.2/sits/R/api_validate.R |only sits-1.5.2/sits/R/api_view.R | 1003 +++++----- sits-1.5.2/sits/R/sits_accuracy.R | 44 sits-1.5.2/sits/R/sits_add_base_cube.R | 2 sits-1.5.2/sits/R/sits_apply.R | 24 sits-1.5.2/sits/R/sits_bands.R | 3 sits-1.5.2/sits/R/sits_bayts.R |only sits-1.5.2/sits/R/sits_bbox.R | 11 sits-1.5.2/sits/R/sits_classify.R | 273 +- sits-1.5.2/sits/R/sits_clean.R | 10 sits-1.5.2/sits/R/sits_cluster.R | 27 sits-1.5.2/sits/R/sits_combine_predictions.R | 7 sits-1.5.2/sits/R/sits_config.R | 3 sits-1.5.2/sits/R/sits_csv.R | 49 sits-1.5.2/sits/R/sits_cube.R | 344 ++- sits-1.5.2/sits/R/sits_cube_copy.R | 70 sits-1.5.2/sits/R/sits_detect_change.R |only sits-1.5.2/sits/R/sits_detect_change_method.R |only sits-1.5.2/sits/R/sits_dtw.R |only sits-1.5.2/sits/R/sits_get_class.R |only sits-1.5.2/sits/R/sits_get_data.R | 45 sits-1.5.2/sits/R/sits_get_probs.R |only sits-1.5.2/sits/R/sits_histogram.R | 12 sits-1.5.2/sits/R/sits_imputation.R | 52 sits-1.5.2/sits/R/sits_label_classification.R | 25 sits-1.5.2/sits/R/sits_lighttae.R | 112 - sits-1.5.2/sits/R/sits_merge.R | 171 - sits-1.5.2/sits/R/sits_mixture_model.R | 36 sits-1.5.2/sits/R/sits_mlp.R | 128 - sits-1.5.2/sits/R/sits_patterns.R | 4 sits-1.5.2/sits/R/sits_plot.R | 621 ++++-- sits-1.5.2/sits/R/sits_reclassify.R | 35 sits-1.5.2/sits/R/sits_reduce.R | 22 sits-1.5.2/sits/R/sits_reduce_imbalance.R |only sits-1.5.2/sits/R/sits_regularize.R | 269 ++ sits-1.5.2/sits/R/sits_sample_functions.R | 526 +++-- sits-1.5.2/sits/R/sits_segmentation.R | 34 sits-1.5.2/sits/R/sits_select.R | 21 sits-1.5.2/sits/R/sits_sf.R | 2 sits-1.5.2/sits/R/sits_smooth.R | 91 sits-1.5.2/sits/R/sits_som.R | 4 sits-1.5.2/sits/R/sits_summary.R | 239 +- sits-1.5.2/sits/R/sits_tae.R | 115 - sits-1.5.2/sits/R/sits_tempcnn.R | 130 - sits-1.5.2/sits/R/sits_timeline.R | 2 sits-1.5.2/sits/R/sits_train.R | 7 sits-1.5.2/sits/R/sits_tuning.R | 46 sits-1.5.2/sits/R/sits_uncertainty.R | 29 sits-1.5.2/sits/R/sits_validate.R | 105 - sits-1.5.2/sits/R/sits_variance.R | 17 sits-1.5.2/sits/R/sits_view.R | 610 +++++- sits-1.5.2/sits/R/zzz.R | 18 sits-1.5.2/sits/inst/WORDLIST | 38 sits-1.5.2/sits/inst/extdata/config.yml | 3 sits-1.5.2/sits/inst/extdata/config_colors.yml | 15 sits-1.5.2/sits/inst/extdata/config_internals.yml | 66 sits-1.5.2/sits/inst/extdata/config_messages.yml | 47 sits-1.5.2/sits/inst/extdata/grids |only sits-1.5.2/sits/inst/extdata/scripts |only sits-1.5.2/sits/inst/extdata/sources/config_source_aws.yml | 11 sits-1.5.2/sits/inst/extdata/sources/config_source_bdc.yml | 23 sits-1.5.2/sits/inst/extdata/sources/config_source_cdse.yml | 24 sits-1.5.2/sits/inst/extdata/sources/config_source_chile.yml | 9 sits-1.5.2/sits/inst/extdata/sources/config_source_deafrica.yml | 53 sits-1.5.2/sits/inst/extdata/sources/config_source_deaustralia.yml | 19 sits-1.5.2/sits/inst/extdata/sources/config_source_hls.yml | 2 sits-1.5.2/sits/inst/extdata/sources/config_source_mpc.yml | 90 sits-1.5.2/sits/inst/extdata/sources/config_source_planet.yaml | 9 sits-1.5.2/sits/inst/extdata/sources/config_source_sdc.yml | 91 sits-1.5.2/sits/inst/extdata/sources/config_source_terrascope.yml | 3 sits-1.5.2/sits/inst/extdata/sources/config_source_usgs.yml | 1 sits-1.5.2/sits/inst/extdata/tmap/api_tmap_v3.R |only sits-1.5.2/sits/inst/extdata/tmap/api_tmap_v4.R | 197 + sits-1.5.2/sits/inst/extdata/torch |only sits-1.5.2/sits/man/impute_linear.Rd | 9 sits-1.5.2/sits/man/plot.class_cube.Rd | 15 sits-1.5.2/sits/man/plot.class_vector_cube.Rd | 5 sits-1.5.2/sits/man/plot.dem_cube.Rd | 10 sits-1.5.2/sits/man/plot.probs_cube.Rd | 18 sits-1.5.2/sits/man/plot.probs_vector_cube.Rd | 7 sits-1.5.2/sits/man/plot.raster_cube.Rd | 12 sits-1.5.2/sits/man/plot.sar_cube.Rd | 12 sits-1.5.2/sits/man/plot.som_clean_samples.Rd |only sits-1.5.2/sits/man/plot.uncertainty_cube.Rd | 17 sits-1.5.2/sits/man/plot.uncertainty_vector_cube.Rd | 5 sits-1.5.2/sits/man/plot.variance_cube.Rd | 22 sits-1.5.2/sits/man/plot.vector_cube.Rd | 5 sits-1.5.2/sits/man/sits-package.Rd | 1 sits-1.5.2/sits/man/sits_accuracy.Rd | 5 sits-1.5.2/sits/man/sits_as_sf.Rd | 6 sits-1.5.2/sits/man/sits_classify.Rd | 64 sits-1.5.2/sits/man/sits_cluster_dendro.Rd | 13 sits-1.5.2/sits/man/sits_combine_predictions.Rd | 14 sits-1.5.2/sits/man/sits_confidence_sampling.Rd | 2 sits-1.5.2/sits/man/sits_cube.Rd | 314 +-- sits-1.5.2/sits/man/sits_cube_copy.Rd | 10 sits-1.5.2/sits/man/sits_get_class.Rd |only sits-1.5.2/sits/man/sits_get_data.Rd | 49 sits-1.5.2/sits/man/sits_get_probs.Rd |only sits-1.5.2/sits/man/sits_kfold_validate.Rd | 18 sits-1.5.2/sits/man/sits_label_classification.Rd | 13 sits-1.5.2/sits/man/sits_merge.Rd | 36 sits-1.5.2/sits/man/sits_mixture_model.Rd | 9 sits-1.5.2/sits/man/sits_reclassify.Rd | 23 sits-1.5.2/sits/man/sits_reduce_imbalance.Rd | 5 sits-1.5.2/sits/man/sits_regularize.Rd | 58 sits-1.5.2/sits/man/sits_segment.Rd | 4 sits-1.5.2/sits/man/sits_select.Rd | 13 sits-1.5.2/sits/man/sits_slic.Rd | 2 sits-1.5.2/sits/man/sits_smooth.Rd | 59 sits-1.5.2/sits/man/sits_tiles_to_roi.Rd |only sits-1.5.2/sits/man/sits_timeseries_to_csv.Rd |only sits-1.5.2/sits/man/sits_tuning.Rd | 28 sits-1.5.2/sits/man/sits_uncertainty.Rd | 14 sits-1.5.2/sits/man/sits_uncertainty_sampling.Rd | 4 sits-1.5.2/sits/man/sits_validate.Rd | 30 sits-1.5.2/sits/man/sits_view.Rd | 155 + sits-1.5.2/sits/man/summary.class_cube.Rd | 4 sits-1.5.2/sits/man/summary.variance_cube.Rd | 7 sits-1.5.2/sits/src/Makevars.win | 5 sits-1.5.2/sits/src/RcppExports.cpp | 60 sits-1.5.2/sits/src/bayts_fns.cpp |only sits-1.5.2/sits/src/dtw.cpp | 11 sits-1.5.2/sits/src/smooth_bayes.cpp | 35 sits-1.5.2/sits/tests/testthat/test-active_learning.R | 6 sits-1.5.2/sits/tests/testthat/test-apply.R | 160 - sits-1.5.2/sits/tests/testthat/test-bands.R | 2 sits-1.5.2/sits/tests/testthat/test-classification.R | 101 - sits-1.5.2/sits/tests/testthat/test-clustering.R | 29 sits-1.5.2/sits/tests/testthat/test-color.R | 30 sits-1.5.2/sits/tests/testthat/test-cube-bdc.R | 34 sits-1.5.2/sits/tests/testthat/test-cube-cdse.R | 10 sits-1.5.2/sits/tests/testthat/test-cube-deafrica.R | 20 sits-1.5.2/sits/tests/testthat/test-cube-deaustralia.R | 12 sits-1.5.2/sits/tests/testthat/test-cube-hls.R | 6 sits-1.5.2/sits/tests/testthat/test-cube-mpc.R | 65 sits-1.5.2/sits/tests/testthat/test-cube.R | 225 +- sits-1.5.2/sits/tests/testthat/test-cube_copy.R | 176 + sits-1.5.2/sits/tests/testthat/test-data.R | 2 sits-1.5.2/sits/tests/testthat/test-file_info.R | 2 sits-1.5.2/sits/tests/testthat/test-get_probs_class.R |only sits-1.5.2/sits/tests/testthat/test-internals.R | 6 sits-1.5.2/sits/tests/testthat/test-labels.R | 3 sits-1.5.2/sits/tests/testthat/test-merge.R |only sits-1.5.2/sits/tests/testthat/test-mixture_model.R | 16 sits-1.5.2/sits/tests/testthat/test-ml.R | 4 sits-1.5.2/sits/tests/testthat/test-mosaic.R | 16 sits-1.5.2/sits/tests/testthat/test-plot.R | 134 - sits-1.5.2/sits/tests/testthat/test-raster.R | 12 sits-1.5.2/sits/tests/testthat/test-regularize.R | 32 sits-1.5.2/sits/tests/testthat/test-roi.R | 20 sits-1.5.2/sits/tests/testthat/test-samples.R | 20 sits-1.5.2/sits/tests/testthat/test-segmentation.R | 28 sits-1.5.2/sits/tests/testthat/test-smooth.R |only sits-1.5.2/sits/tests/testthat/test-summary.R | 3 sits-1.5.2/sits/tests/testthat/test-tibble.R | 14 sits-1.5.2/sits/tests/testthat/test-tuning.R | 2 sits-1.5.2/sits/tests/testthat/test-variance.R | 2 sits-1.5.2/sits/tests/testthat/test-view.R | 32 223 files changed, 8494 insertions(+), 4757 deletions(-)
Title: Semi-Automatic Reporting of Ordinary Surveys
Description: Offers a systematic way for conditional reporting of figures and tables for many
(and bivariate combinations of) variables, typically from survey data.
Contains interactive 'ggiraph'-based
(<https://CRAN.R-project.org/package=ggiraph>) plotting functions and
data frame-based summary tables (bivariate significance tests,
frequencies/proportions, unique open ended responses, etc) with
many arguments for customization, and extensions possible. Uses a global
options() system for neatly reducing redundant code.
Also contains tools for immediate saving of objects and returning a hashed link to the object,
useful for creating download links to high resolution images upon rendering in 'Quarto'.
Suitable for highly customized reports, primarily intended for survey
research.
Author: Stephan Daus [aut, cre, cph] ,
Julia Silge [ctb] ,
David Robinson [ctb] ,
Nordic Institute for The Studies of Innovation, Research and Education
[fnd],
Kristiania University College [fnd]
Maintainer: Stephan Daus <stephus.daus@gmail.com>
Diff between saros versions 1.5.0 dated 2025-01-10 and 1.5.1 dated 2025-02-12
DESCRIPTION | 6 - MD5 | 29 ++--- NEWS.md | 7 + R/convert_trailing_chars.R |only R/girafe.R | 1 R/make_content.cat_plot_html.R | 117 ++++++++++++---------- R/make_content.cat_table_html.R | 26 +++- R/makeme.R | 2 R/scale_x_reordered.R | 9 - R/zzz.R | 3 inst/WORDLIST | 1 inst/doc/for_chapter_author.html | 8 - inst/doc/for_developers.html | 3 inst/doc/for_readers.html | 3 inst/doc/saros_name.html | 3 tests/testthat/test-make_content.cat_table_html.R | 18 ++- 16 files changed, 142 insertions(+), 94 deletions(-)
Title: Propensity Score Weighting for Causal Inference with
Observational Studies and Randomized Trials
Description: Supports propensity score weighting analysis of observational studies and randomized trials. Enables the estimation and inference of average causal effects with binary and multiple treatments using overlap weights (ATO), inverse probability of treatment weights (ATE), average treatment effect among the treated weights (ATT), matching weights (ATM) and entropy weights (ATEN), with and without propensity score trimming. These weights are members of the family of balancing weights introduced in Li, Morgan and Zaslavsky (2018) <doi:10.1080/01621459.2016.1260466> and Li and Li (2019) <doi:10.1214/19-AOAS1282>.
Author: Tianhui Zhou [aut],
Guangyu Tong [aut],
Fan Li [aut],
Laine Thomas [aut],
Fan Li [aut],
Yukang Zeng [cre]
Maintainer: Yukang Zeng <yukang.zeng@yale.edu>
Diff between PSweight versions 1.2.0 dated 2024-03-29 and 2.1.0 dated 2025-02-12
PSweight-1.2.0/PSweight/vignettes/Software_vig_original.pdf |only PSweight-2.1.0/PSweight/DESCRIPTION | 12 +- PSweight-2.1.0/PSweight/MD5 | 52 ++++++--- PSweight-2.1.0/PSweight/NAMESPACE | 9 + PSweight-2.1.0/PSweight/NEWS.md | 36 +----- PSweight-2.1.0/PSweight/R/OUTmethod.R | 2 PSweight-2.1.0/PSweight/R/OUTmethod_SW.R |only PSweight-2.1.0/PSweight/R/PSmethod_SW.R |only PSweight-2.1.0/PSweight/R/PStrim_SW.R |only PSweight-2.1.0/PSweight/R/PSweight_SW.R |only PSweight-2.1.0/PSweight/R/SumStat_SW.R |only PSweight-2.1.0/PSweight/R/SumStat_cl.R | 19 +-- PSweight-2.1.0/PSweight/R/bin_est.R | 3 PSweight-2.1.0/PSweight/R/bin_est_SW.R |only PSweight-2.1.0/PSweight/R/plot_SumStat_SW.R |only PSweight-2.1.0/PSweight/R/psdata_bin_prospective_fp.R |only PSweight-2.1.0/PSweight/R/psdata_bin_prospective_sp.R |only PSweight-2.1.0/PSweight/R/psdata_bin_retrospective_fp.R |only PSweight-2.1.0/PSweight/R/psdata_bin_retrospective_sp.R |only PSweight-2.1.0/PSweight/R/pt_est_SW.R |only PSweight-2.1.0/PSweight/R/sand_var_SW.R |only PSweight-2.1.0/PSweight/README.md | 56 ++++------ PSweight-2.1.0/PSweight/build/vignette.rds |binary PSweight-2.1.0/PSweight/data/psdata_bin_prospective_fp.RData |only PSweight-2.1.0/PSweight/data/psdata_bin_prospective_sp.RData |only PSweight-2.1.0/PSweight/data/psdata_bin_retrospective_fp.RData |only PSweight-2.1.0/PSweight/data/psdata_bin_retrospective_sp.RData |only PSweight-2.1.0/PSweight/inst/doc/Software_vig.Rmd | 3 PSweight-2.1.0/PSweight/inst/doc/Software_vig.pdf |binary PSweight-2.1.0/PSweight/man/OUTmethod_SW.Rd |only PSweight-2.1.0/PSweight/man/PSmethod_SW.Rd |only PSweight-2.1.0/PSweight/man/PStrim_SW.Rd |only PSweight-2.1.0/PSweight/man/PSweight_SW.Rd |only PSweight-2.1.0/PSweight/man/SumStat_SW.Rd |only PSweight-2.1.0/PSweight/man/SumStat_cl.Rd | 9 - PSweight-2.1.0/PSweight/man/plot.SumStat_SW.Rd |only PSweight-2.1.0/PSweight/man/psdata_bin_prospective_fp.Rd |only PSweight-2.1.0/PSweight/man/psdata_bin_prospective_sp.Rd |only PSweight-2.1.0/PSweight/man/psdata_bin_retrospective_fp.Rd |only PSweight-2.1.0/PSweight/man/psdata_bin_retrospective_sp.Rd |only PSweight-2.1.0/PSweight/vignettes/Software_vig.Rmd | 3 41 files changed, 109 insertions(+), 95 deletions(-)
Title: Exploratory Data Analysis System
Description: Performs an exploratory data analysis through a 'shiny' interface. It includes basic methods such as the mean, median, mode, normality test, among others. It also includes clustering techniques such as Principal Components Analysis, Hierarchical Clustering and the K-Means Method.
Author: Oldemar Rodriguez [aut, cre],
Diego Jimenez [aut]
Maintainer: Oldemar Rodriguez <oldemar.rodriguez@ucr.ac.cr>
Diff between discoveR versions 3.1.2 dated 2023-01-20 and 3.1.7 dated 2025-02-12
discoveR-3.1.2/discoveR/man/app_server.Rd |only discoveR-3.1.7/discoveR/DESCRIPTION | 13 ++++---- discoveR-3.1.7/discoveR/MD5 | 27 ++++++++---------- discoveR-3.1.7/discoveR/R/app_server.R | 11 +++++-- discoveR-3.1.7/discoveR/R/discoveR.R | 6 ++-- discoveR-3.1.7/discoveR/R/mod_acercade.R | 2 - discoveR-3.1.7/discoveR/R/mod_afc_utils.R | 12 +++++--- discoveR-3.1.7/discoveR/R/mod_cj.R | 2 + discoveR-3.1.7/discoveR/R/mod_kmedias.R | 2 + discoveR-3.1.7/discoveR/inst/app/lang/diccionario.csv | 1 discoveR-3.1.7/discoveR/inst/app/lang/translation.bin |binary discoveR-3.1.7/discoveR/inst/golem-config.yml | 2 - discoveR-3.1.7/discoveR/man/discoveR.Rd | 14 ++++++++- discoveR-3.1.7/discoveR/man/e_afcbi.Rd | 6 ++-- discoveR-3.1.7/discoveR/man/e_afcbi_3D.Rd | 6 ++-- 15 files changed, 66 insertions(+), 38 deletions(-)
Title: Sequence Symmetry Analysis Using the Observational Medical
Outcomes Partnership Common Data Model
Description: Calculating crude sequence ratio, adjusted sequence ratio and
confidence intervals using data mapped to the Observational Medical
Outcomes Partnership Common Data Model.
Author: Xihang Chen [aut, cre] ,
Tyman Stanford [aut] ,
Berta Raventos [aut] ,
Nicole Pratt [aut] ,
Ed Burn [aut] ,
Marti Catala [aut] ,
Danielle Newby [aut] ,
Nuria Mercade-Besora [aut] ,
Mike Du [aut] ,
Yuchen Guo [aut] ,
Kim Lopez [aut] ,
Marta Alcalde-He [...truncated...]
Maintainer: Xihang Chen <xihang.chen@ndorms.ox.ac.uk>
Diff between CohortSymmetry versions 0.2.0 dated 2024-11-29 and 0.2.1 dated 2025-02-12
DESCRIPTION | 15 - MD5 | 62 ++--- R/mockCohortSymmetry.R | 6 README.md | 34 +-- build/vignette.rds |binary inst/doc/a01_Introduction.html | 16 - inst/doc/a02_Generate_a_sequence_cohort.R | 110 ++++----- inst/doc/a02_Generate_a_sequence_cohort.Rmd | 10 inst/doc/a02_Generate_a_sequence_cohort.html | 26 +- inst/doc/a03_Summarise_sequence_ratios.R | 13 - inst/doc/a03_Summarise_sequence_ratios.Rmd | 11 inst/doc/a03_Summarise_sequence_ratios.html | 6 inst/doc/a04_Visualise_sequence_ratios.R | 12 - inst/doc/a04_Visualise_sequence_ratios.Rmd | 10 inst/doc/a04_Visualise_sequence_ratios.html | 6 inst/doc/a05_Summarise_temporal_symmetry.R | 12 - inst/doc/a05_Summarise_temporal_symmetry.Rmd | 10 inst/doc/a05_Summarise_temporal_symmetry.html | 32 +- inst/doc/a06_Visualise_temporal_symmetry.R | 13 - inst/doc/a06_Visualise_temporal_symmetry.Rmd | 11 inst/doc/a06_Visualise_temporal_symmetry.html | 2 tests/testthat/test-dbs.R | 182 ++++++++-------- tests/testthat/test-eunomia.R | 138 ++++++------ tests/testthat/test-plotSequenceRatio.R | 265 ++++++++++++------------ tests/testthat/test-plotTemporalSymmetry.R | 6 tests/testthat/test-summariseSequenceRatios.R | 10 tests/testthat/test-summariseTemporalSymmetry.R | 2 vignettes/a02_Generate_a_sequence_cohort.Rmd | 10 vignettes/a03_Summarise_sequence_ratios.Rmd | 11 vignettes/a04_Visualise_sequence_ratios.Rmd | 10 vignettes/a05_Summarise_temporal_symmetry.Rmd | 10 vignettes/a06_Visualise_temporal_symmetry.Rmd | 11 32 files changed, 544 insertions(+), 528 deletions(-)
More information about CohortSymmetry at CRAN
Permanent link
Title: Compute Standardized Mean Differences
Description: Computes standardized mean differences and confidence intervals for
multiple data types based on Yang, D., & Dalton, J. E. (2012)
<https://support.sas.com/resources/papers/proceedings12/335-2012.pdf>.
Author: Bradley Saul [aut, cre],
Alex Breskin [ctb],
Catie Wiener [ctb],
Matt Phelan [ctb],
Daniel Sjoberg [ctb],
Nuvan Rathnayaka [ctb],
Malcolm Barrett [ctb]
Maintainer: Bradley Saul <bradleysaul@fastmail.com>
Diff between smd versions 0.7.0 dated 2024-05-06 and 0.8.0 dated 2025-02-12
DESCRIPTION | 15 ++++++----- MD5 | 14 +++++----- R/mean_var.R | 54 ++++++++++++++++++++++++++++++++++++++++- build/partial.rdb |binary build/vignette.rds |binary inst/doc/smd_usage.html | 6 ++-- man/n_mean_var.Rd | 18 ++++++++++++- tests/testthat/test_mean_var.R | 19 ++++++++++++++ 8 files changed, 108 insertions(+), 18 deletions(-)
Title: Goodness of Fit Checks for Binomial N-Mixture Models
Description: Provides residuals and overdispersion metrics to assess the fit of N-mixture models obtained using the package 'unmarked'.
Details on the methods are given in Knape et al. (2017) <doi:10.1101/194340>.
Author: Jonas Knape [aut, cre]
Maintainer: Jonas Knape <jonas.knape@slu.se>
Diff between nmixgof versions 0.1.0 dated 2018-07-05 and 0.1.1 dated 2025-02-12
DESCRIPTION | 8 MD5 | 19 - R/data.R | 39 +-- R/nmixgof.R | 38 +- R/rqRes.r | 671 ++++++++++++++++++++++++++-------------------------- README.md | 40 +-- build |only man/nmixgof.Rd | 18 + man/residqq.Rd | 9 man/shoveler.Rd | 9 src/RcppExports.cpp | 5 11 files changed, 444 insertions(+), 412 deletions(-)
Title: Workflows for Building Web Applications
Description: Sharing statistical methods or simulation frameworks through 'shiny'
applications often requires workflows for handling data. To help save and
display simulation results, the postgresUI() and postgresServer() functions
in 'mmints' help with persistent data storage using a 'PostgreSQL' database.
The 'mmints' package also offers data upload functionality through the
csvUploadUI() and csvUploadServer() functions which allow users to upload
data, view variables and their types, and edit variable types before fitting
statistical models within the 'shiny' application. These tools aim to
enhance efficiency and user interaction in 'shiny' based statistical and
simulation applications.
Author: Mackson Ncube [aut, cre],
mightymetrika, LLC [cph, fnd]
Maintainer: Mackson Ncube <macksonncube.stats@gmail.com>
Diff between mmints versions 0.1.0 dated 2024-09-05 and 0.2.0 dated 2025-02-12
DESCRIPTION | 8 - LICENSE | 4 MD5 | 59 ++++--- NAMESPACE | 30 ++- R/authModule.R |only R/citationModule.R | 184 +++++++++++------------ R/citations.R | 70 ++++---- R/csvUploadModule.R | 268 +++++++++++++++++----------------- R/generateRunCode.R | 72 ++++----- R/globals.R |only R/postgresModule.R | 11 + R/ui_to_server.R | 224 ++++++++++++++-------------- man/authServer.Rd |only man/authUI.Rd |only man/citationServer.Rd | 68 ++++---- man/citationUI.Rd | 50 +++--- man/csvUploadServer.Rd | 50 +++--- man/csvUploadUI.Rd | 50 +++--- man/format_citation.Rd | 44 ++--- man/generateRunCode.Rd | 70 ++++---- man/list_null.Rd | 72 ++++----- man/postgresServer.Rd | 87 +++++------ man/postgresUI.Rd | 56 +++---- man/text_to_list.Rd | 50 +++--- man/text_to_vector.Rd | 58 +++---- man/vec_null.Rd | 70 ++++---- tests/testthat.R | 24 +-- tests/testthat/test-authModule.R |only tests/testthat/test-citationModule.R | 76 ++++----- tests/testthat/test-citations.R | 8 - tests/testthat/test-csvUploadModule.R | 54 +++--- tests/testthat/test-generateRunCode.R | 6 tests/testthat/test-ui_to_server.R | 128 ++++++++-------- 33 files changed, 985 insertions(+), 966 deletions(-)
Title: Extended Mixed Models Using Latent Classes and Latent Processes
Description: Estimation of various extensions of the mixed models including latent class mixed models, joint latent class mixed models, mixed models for curvilinear outcomes, mixed models for multivariate longitudinal outcomes using a maximum likelihood estimation method (Proust-Lima, Philipps, Liquet (2017) <doi:10.18637/jss.v078.i02>).
Author: Cecile Proust-Lima [aut, cre],
Viviane Philipps [aut],
Amadou Diakite [ctb],
Benoit Liquet [ctb],
Alan Genz [ctb] ,
John Burkardt [ctb]
Maintainer: Cecile Proust-Lima <cecile.proust-lima@inserm.fr>
Diff between lcmm versions 2.2.0 dated 2025-02-03 and 2.2.1 dated 2025-02-12
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/multlcmm.R | 2 +- build/partial.rdb |binary 4 files changed, 8 insertions(+), 8 deletions(-)
Title: Merge and Download International Large-Scale Assessments (ILSA)
Data
Description: Merges and downloads 'SPSS' data from different International Large-Scale Assessments (ILSA), including: Trends in International Mathematics and Science Study (TIMSS), Progress in International Reading Literacy Study (PIRLS), and others.
Author: Andres Christiansen [aut, cre]
,
Andres Strello [ctb]
Maintainer: Andres Christiansen <andres.christiansen@iea-hamburg.de>
Diff between ILSAmerge versions 1.3.5 dated 2025-01-08 and 1.3.6 dated 2025-02-12
DESCRIPTION | 8 +-- MD5 | 28 +++++----- NEWS.md | 12 +++- R/ILSAmerge.R | 10 +++ R/availableILSA.R | 4 + R/justload.R | 7 ++ R/readILSA.R | 8 +-- R/sysdata.rda |binary inst/doc/Download.html | 4 - inst/doc/Load.html | 28 +++------- inst/doc/Merge.html | 2 inst/doc/Onestep.html | 2 inst/extdata/ilsainfo/ILSAcou.csv | 3 + inst/extdata/ilsainfo/ILSAlinks.csv | 92 ++++++++++++++++++------------------ inst/extdata/ilsainfo/ILSApops.csv | 19 +++++++ 15 files changed, 131 insertions(+), 96 deletions(-)
Title: Color Calculations with Emphasis on Spectral Data
Description: Calculate with spectral properties of light sources, materials, cameras, eyes, and scanners.
Build complex systems from simpler parts using a spectral product algebra. For light sources,
compute CCT, CRI, SSI, and IES TM-30 reports. For object colors, compute optimal colors and Logvinenko coordinates.
Work with the standard CIE illuminants and color matching functions, and read spectra from
text files, including CGATS files. Estimate a spectrum from its response. A user guide and 9 vignettes are included.
Author: Glenn Davis [aut, cre]
Maintainer: Glenn Davis <gdavis@gluonics.com>
Diff between colorSpec versions 1.6-0 dated 2025-01-15 and 1.7-0 dated 2025-02-12
colorSpec-1.6-0/colorSpec/R/zonogon.R |only colorSpec-1.6-0/colorSpec/R/zonogon3.R |only colorSpec-1.6-0/colorSpec/R/zonohedron.R |only colorSpec-1.7-0/colorSpec/DESCRIPTION | 17 colorSpec-1.7-0/colorSpec/MD5 | 87 colorSpec-1.7-0/colorSpec/NAMESPACE | 33 colorSpec-1.7-0/colorSpec/NEWS.md | 6 colorSpec-1.7-0/colorSpec/R/colorSpec.TM30.R |only colorSpec-1.7-0/colorSpec/R/colorSpec.metrics.R | 334 +-- colorSpec-1.7-0/colorSpec/R/colorSpec.optimal.R | 1045 +++++----- colorSpec-1.7-0/colorSpec/R/colorSpec.plot.R | 2 colorSpec-1.7-0/colorSpec/R/datasets.R | 24 colorSpec-1.7-0/colorSpec/R/events.R | 36 colorSpec-1.7-0/colorSpec/R/reparam.R | 180 - colorSpec-1.7-0/colorSpec/R/sysdata.rda |binary colorSpec-1.7-0/colorSpec/R/transitions.R | 2 colorSpec-1.7-0/colorSpec/R/utils.R | 549 +++++ colorSpec-1.7-0/colorSpec/R/zonotope.R |only colorSpec-1.7-0/colorSpec/build/vignette.rds |binary colorSpec-1.7-0/colorSpec/inst/doc/blueflame.pdf |binary colorSpec-1.7-0/colorSpec/inst/doc/colorSpec-guide.html | 8 colorSpec-1.7-0/colorSpec/inst/doc/convexity.pdf |binary colorSpec-1.7-0/colorSpec/inst/doc/emulation.pdf |binary colorSpec-1.7-0/colorSpec/inst/doc/gallery.pdf |binary colorSpec-1.7-0/colorSpec/inst/doc/inversion.pdf |binary colorSpec-1.7-0/colorSpec/inst/doc/lens-aging.pdf |binary colorSpec-1.7-0/colorSpec/inst/doc/optimals.R | 64 colorSpec-1.7-0/colorSpec/inst/doc/optimals.pdf |binary colorSpec-1.7-0/colorSpec/inst/doc/optimals.rnw | 160 + colorSpec-1.7-0/colorSpec/inst/doc/phenolred.html | 14 colorSpec-1.7-0/colorSpec/inst/doc/photoncounting.html | 14 colorSpec-1.7-0/colorSpec/inst/extdata/eyes/BeeEye.txt |only colorSpec-1.7-0/colorSpec/inst/extdata/eyes/bee.png |only colorSpec-1.7-0/colorSpec/inst/extdata/targets/99_CES_TM-30-18.csv |only colorSpec-1.7-0/colorSpec/inst/extdata/targets/backgroundTM-30.png |only colorSpec-1.7-0/colorSpec/man/TM30.Rd |only colorSpec-1.7-0/colorSpec/man/canonicalOptimalColors.Rd | 11 colorSpec-1.7-0/colorSpec/man/computeADL.Rd | 78 colorSpec-1.7-0/colorSpec/man/computeCRI.Rd | 14 colorSpec-1.7-0/colorSpec/man/insideOptimalColors.Rd |only colorSpec-1.7-0/colorSpec/man/insideSchrodingerColors.Rd |only colorSpec-1.7-0/colorSpec/man/plotOptimals.Rd | 49 colorSpec-1.7-0/colorSpec/man/probeOptimalColors.Rd | 66 colorSpec-1.7-0/colorSpec/man/product.Rd | 4 colorSpec-1.7-0/colorSpec/man/responsivityMetrics.Rd | 61 colorSpec-1.7-0/colorSpec/man/sectionOptimalColors.Rd | 99 colorSpec-1.7-0/colorSpec/man/sectionSchrodingerColors.Rd |only colorSpec-1.7-0/colorSpec/tests/test-optimals.R | 19 colorSpec-1.7-0/colorSpec/vignettes/optimal-help.R | 52 colorSpec-1.7-0/colorSpec/vignettes/optimals.bib | 56 colorSpec-1.7-0/colorSpec/vignettes/optimals.rnw | 160 + 51 files changed, 2171 insertions(+), 1073 deletions(-)
Title: Simple Functions to Save Time and Memory
Description: Fast and memory-efficient (or 'cheap') tools to facilitate
efficient programming, saving time and memory. It aims to provide
'cheaper' alternatives to common base R functions, as well as some
additional functions.
Author: Nick Christofides [aut, cre]
Maintainer: Nick Christofides <nick.christofides.r@gmail.com>
Diff between cheapr versions 1.0.0 dated 2025-01-22 and 1.0.1 dated 2025-02-12
DESCRIPTION | 8 MD5 | 35 +-- NAMESPACE | 1 NEWS.md | 12 + R/cpp11.R | 8 R/if_else.R | 4 R/int_sign.R |only R/overview.R | 295 ++++++++++++++++------------- R/utils.R | 73 ++++--- man/int_sign.Rd |only man/overview.Rd | 33 +-- src/cpp11.cpp | 16 + src/int64.cpp | 116 ++++++----- src/lists.cpp | 21 +- src/set_math.cpp | 36 +++ src/utils.cpp | 68 ++++++ tests/testthat/_snaps/overview.md | 377 +++++++++++++++++++------------------- tests/testthat/test-new_df.R |only tests/testthat/test-overview.R | 12 - tests/testthat/test-scalars.R | 25 ++ 20 files changed, 692 insertions(+), 448 deletions(-)
Title: Vector Generalized Linear and Additive Models
Description: An implementation of about 6 major classes of
statistical regression models. The central algorithm is
Fisher scoring and iterative reweighted least squares.
At the heart of this package are the vector generalized linear
and additive model (VGLM/VGAM) classes. VGLMs can be loosely
thought of as multivariate GLMs. VGAMs are data-driven
VGLMs that use smoothing. The book "Vector Generalized
Linear and Additive Models: With an Implementation in R"
(Yee, 2015) <DOI:10.1007/978-1-4939-2818-7> gives details of
the statistical framework and the package. Currently only
fixed-effects models are implemented. Many (100+) models and
distributions are estimated by maximum likelihood estimation
(MLE) or penalized MLE. The other classes are RR-VGLMs
(reduced-rank VGLMs), quadratic RR-VGLMs, doubly constrained
RR-VGLMs, quadratic RR-VGLMs, reduced-rank VGAMs,
RCIMs (row-column interaction models)---these classes perform
constrained and unconstrained quadratic ordination (CQO/UQO)
models in ecolog [...truncated...]
Author: Thomas Yee [aut, cre] ,
Cleve Moler [ctb]
Maintainer: Thomas Yee <t.yee@auckland.ac.nz>
Diff between VGAM versions 1.1-12 dated 2024-09-18 and 1.1-13 dated 2025-02-12
DESCRIPTION | 8 MD5 | 318 ++++--- NAMESPACE | 17 NEWS | 38 R/Links.R | 2 R/Linksold.R | 2 R/aamethods.q | 10 R/anova.vglm.q | 2 R/attrassign.R | 2 R/bAIC.q | 2 R/build.terms.vlm.q | 2 R/calibrate.R | 2 R/cao.R | 2 R/cao.fit.q | 2 R/coef.vlm.q | 2 R/confint.vlm.R | 2 R/cqo.R | 2 R/cqo.fit.q | 2 R/deviance.vlm.q | 2 R/effects.vglm.q | 2 R/family.actuary.R | 363 +++++---- R/family.aunivariate.R | 257 +++--- R/family.basics.R | 13 R/family.binomial.R | 1711 +++++++++++++++++++++++++++++++++++++------ R/family.bivariate.R | 198 +++- R/family.bunivariate.R | 34 R/family.categorical.R | 79 - R/family.censored.R | 26 R/family.circular.R | 65 - R/family.exp.R | 45 - R/family.extremes.R | 134 ++- R/family.functions.R | 2 R/family.gait0.R | 26 R/family.gaitd.R | 65 - R/family.genetic.R | 27 R/family.glmgam.R | 104 +- R/family.loglin.R | 10 R/family.maths.R | 10 R/family.mixture.R | 37 R/family.nbd.R | 26 R/family.nonlinear.R | 14 R/family.normal.R | 142 ++- R/family.oneinf.R | 14 R/family.others.R | 205 ++--- R/family.positive.R | 70 + R/family.qreg.R | 369 +++------ R/family.rcim.R | 2 R/family.rcqo.R | 11 R/family.robust.R | 21 R/family.rrr.R | 12 R/family.sur.R | 21 R/family.survival.R | 23 R/family.ts.R | 39 R/family.univariate.R | 405 ++++++---- R/family.vglm.R | 58 - R/family.zeroinf.R | 253 ++++-- R/fittedvlm.R | 2 R/formula.vlm.q | 2 R/generic.q | 2 R/getxvlmaug.R | 2 R/hdeff.R | 101 +- R/links.q | 33 R/logLik.vlm.q | 2 R/lrp.R | 2 R/lrwaldtest.R | 2 R/model.matrix.vglm.q | 2 R/mux.q | 2 R/nobs.R | 59 + R/plot.vgam.R | 2 R/plot.vglm.R | 2 R/predict.vgam.q | 2 R/predict.vglm.q | 6 R/predict.vlm.q | 2 R/print.vglm.q | 2 R/print.vlm.q | 2 R/psv2magic.R | 2 R/qrrvglm.control.q | 2 R/qtplot.q | 2 R/residuals.vlm.q | 2 R/rootogram4.vglm.R | 2 R/rrvglm.R | 2 R/rrvglm.control.q | 8 R/rrvglm.fit.q | 10 R/s.q | 2 R/s.vam.q | 2 R/simulate.vglm.R | 2 R/sm.os.R | 2 R/sm.ps.R | 2 R/smart.R | 2 R/step4.vglm.R | 2 R/summary.drrvglm.R | 2 R/summary.vgam.q | 2 R/summary.vglm.q | 699 ++++++++++++++++- R/summary.vlm.q | 21 R/vcov.pvgam.R | 2 R/vgam.R | 2 R/vgam.control.q | 2 R/vgam.fit.q | 2 R/vgam.match.q | 2 R/vglm.R | 2 R/vglm.control.q | 2 R/vglm.fit.q | 7 R/vlm.R | 2 R/vlm.wfit.q | 2 R/vsmooth.spline.q | 2 R/wald0.R | 2 inst/CITATION | 37 man/A1A2A3.Rd | 2 man/CommonVGAMffArguments.Rd | 5 man/VGAM-package.Rd | 78 + man/alteredvglm.Rd | 2 man/betabinomial.Rd | 3 man/betabinomial.rho.Rd |only man/betaff.Rd | 2 man/binom2.or.Rd | 5 man/binom2.orUC.Rd | 14 man/binom2.rhoUC.Rd | 15 man/binom3.or.Rd |only man/binom3.orUC.Rd |only man/binomialff.Rd | 7 man/cardioid.Rd | 4 man/cops.Rd | 3 man/dgaitdplot.Rd | 10 man/dirmultinomial.Rd | 4 man/double.expbinomial.Rd | 4 man/extbetabinomUC.Rd | 2 man/extbetabinomial.Rd | 7 man/felix.Rd | 2 man/foldsqrtlink.Rd | 4 man/gaitdnbinomial.Rd | 8 man/gaitdpoisUC.Rd | 3 man/gaitdpoisson.Rd | 2 man/garma.Rd | 17 man/gev.Rd | 4 man/gpd.Rd | 14 man/grc.Rd | 7 man/hdeff.Rd | 69 + man/hdeffsev.Rd | 278 ++---- man/hdeffsev2.Rd |only man/hypersecant.Rd | 4 man/inv.binomial.Rd | 2 man/laplaceUC.Rd | 3 man/leipnik.Rd | 2 man/linkfunvlm.Rd | 21 man/loglinb3.Rd | 1 man/mccullagh89.Rd | 2 man/multinomial.Rd | 5 man/nbcanlink.Rd | 6 man/niters.Rd |only man/notdocumentedyet.Rd | 5 man/posbernoulli.t.Rd | 3 man/powerlink.Rd | 5 man/specialsvglm.Rd | 2 man/summarydrrvglm.Rd | 2 man/summaryvglm.Rd | 107 ++ man/trinormal.Rd | 6 man/undocumented-methods.Rd | 9 man/vglm.control.Rd | 5 man/vonmises.Rd | 2 man/wsdm.Rd |only man/yulesimon.Rd | 2 man/zipoisson.Rd | 7 man/zoabetaR.Rd | 2 163 files changed, 4913 insertions(+), 2240 deletions(-)
Title: Iterated Racing for Automatic Algorithm Configuration
Description: Iterated race is an extension of the Iterated F-race method for
the automatic configuration of optimization algorithms, that is,
(offline) tuning their parameters by finding the most appropriate
settings given a set of instances of an optimization problem.
M. López-Ibáñez, J. Dubois-Lacoste, L. Pérez Cáceres, T. Stützle,
and M. Birattari (2016) <doi:10.1016/j.orp.2016.09.002>.
Author: Manuel Lopez-Ibanez [aut, cre]
,
Jeremie Dubois-Lacoste [aut],
Leslie Perez Caceres [aut],
Thomas Stuetzle [aut],
Mauro Birattari [aut],
Eric Yuan [ctb],
Prasanna Balaprakash [ctb],
Nguyen Dang [ctb]
Maintainer: Manuel Lopez-Ibanez <manuel.lopez-ibanez@manchester.ac.uk>
Diff between irace versions 4.1 dated 2024-12-17 and 4.2.0 dated 2025-02-12
irace-4.1/irace/tests/testthat/test-ablation-cmdline.R |only irace-4.2.0/irace/.Rinstignore | 4 irace-4.2.0/irace/DESCRIPTION | 13 irace-4.2.0/irace/MD5 | 169 + irace-4.2.0/irace/NAMESPACE | 3 irace-4.2.0/irace/NEWS.md | 198 +- irace-4.2.0/irace/R/aaa.R | 7 irace-4.2.0/irace/R/ablation.R | 396 ++-- irace-4.2.0/irace/R/cluster.R | 8 irace-4.2.0/irace/R/configurations.R | 54 irace-4.2.0/irace/R/generation.R | 85 - irace-4.2.0/irace/R/irace-options.R | 285 +-- irace-4.2.0/irace/R/irace-package.R | 20 irace-4.2.0/irace/R/irace.R | 643 +++---- irace-4.2.0/irace/R/irace_summarise.R | 3 irace-4.2.0/irace/R/main.R | 148 - irace-4.2.0/irace/R/model.R | 8 irace-4.2.0/irace/R/multi_irace.R | 14 irace-4.2.0/irace/R/parameterAnalysis.R | 65 irace-4.2.0/irace/R/parameters.R | 110 - irace-4.2.0/irace/R/path_rel2abs.R | 9 irace-4.2.0/irace/R/psRace.R | 170 +- irace-4.2.0/irace/R/race-wrapper.R | 187 +- irace-4.2.0/irace/R/race.R | 933 +++++------ irace-4.2.0/irace/R/race_state.R | 206 +- irace-4.2.0/irace/R/readConfiguration.R | 51 irace-4.2.0/irace/R/readParameters.R | 87 - irace-4.2.0/irace/R/scenario.R | 275 +-- irace-4.2.0/irace/R/testing.R | 18 irace-4.2.0/irace/R/timer.R | 3 irace-4.2.0/irace/R/utils.R | 191 +- irace-4.2.0/irace/R/version.R | 2 irace-4.2.0/irace/build/partial.rdb |binary irace-4.2.0/irace/cleanup | 8 irace-4.2.0/irace/inst/doc/irace-package.R | 172 +- irace-4.2.0/irace/inst/doc/irace-package.Rnw | 152 + irace-4.2.0/irace/inst/doc/irace-package.pdf |binary irace-4.2.0/irace/inst/examples/acotsp/README | 12 irace-4.2.0/irace/inst/examples/acotsp/parameters-acotsp.txt | 2 irace-4.2.0/irace/inst/examples/acotsp/scenario.txt | 5 irace-4.2.0/irace/inst/examples/acotsp/target-runner | 32 irace-4.2.0/irace/inst/examples/slurm/job.sh | 11 irace-4.2.0/irace/inst/examples/slurm/run_irace.R | 31 irace-4.2.0/irace/inst/exdata/irace-acotsp.Rdata |binary irace-4.2.0/irace/inst/exdata/log-ablation.Rdata |binary irace-4.2.0/irace/inst/exdata/sann.rda |binary irace-4.2.0/irace/inst/templates/scenario.txt.tmpl | 11 irace-4.2.0/irace/man/ablation.Rd | 6 irace-4.2.0/irace/man/ablation_cmdline.Rd | 6 irace-4.2.0/irace/man/defaultScenario.Rd | 42 irace-4.2.0/irace/man/getConfigurationById.Rd | 7 irace-4.2.0/irace/man/getConfigurationByIteration.Rd | 2 irace-4.2.0/irace/man/getFinalElites.Rd | 2 irace-4.2.0/irace/man/get_instanceID_seed_pairs.Rd | 4 irace-4.2.0/irace/man/irace.Rd | 6 irace-4.2.0/irace/man/irace_cmdline.Rd | 17 irace-4.2.0/irace/man/multi_irace.Rd | 4 irace-4.2.0/irace/man/printParameters.Rd | 2 irace-4.2.0/irace/man/psRace.Rd | 42 irace-4.2.0/irace/man/readParameters.Rd | 2 irace-4.2.0/irace/man/read_ablogfile.Rd | 4 irace-4.2.0/irace/man/read_pcs_file.Rd | 4 irace-4.2.0/irace/man/save_irace_logfile.Rd |only irace-4.2.0/irace/man/testing_fromlog.Rd | 8 irace-4.2.0/irace/src/iracebin/irace.h | 86 - irace-4.2.0/irace/src/iracebin/whereami.c | 26 irace-4.2.0/irace/src/iracebin/whereami.h | 6 irace-4.2.0/irace/tests/testthat/helper-common.R | 95 - irace-4.2.0/irace/tests/testthat/test-ablation.R | 243 ++ irace-4.2.0/irace/tests/testthat/test-blocksize.R | 28 irace-4.2.0/irace/tests/testthat/test-bug-10.R | 4 irace-4.2.0/irace/tests/testthat/test-bug-55.R | 2 irace-4.2.0/irace/tests/testthat/test-capping.R | 17 irace-4.2.0/irace/tests/testthat/test-dependencies.R | 18 irace-4.2.0/irace/tests/testthat/test-get-functions.R |only irace-4.2.0/irace/tests/testthat/test-maxTime.R | 22 irace-4.2.0/irace/tests/testthat/test-multi_irace.R | 14 irace-4.2.0/irace/tests/testthat/test-psrace.R |only irace-4.2.0/irace/tests/testthat/test-readconfs.R | 2 irace-4.2.0/irace/tests/testthat/test-recovery.R |only irace-4.2.0/irace/tests/testthat/test-repair.R | 2 irace-4.2.0/irace/tests/testthat/test-similar.R | 2 irace-4.2.0/irace/tests/testthat/test-sobol.R | 28 irace-4.2.0/irace/tests/testthat/test-target-runner-dummy.R | 28 irace-4.2.0/irace/tests/testthat/test-targeteval.R | 111 + irace-4.2.0/irace/vignettes/irace-acotsp-stdout.txt | 528 +++--- irace-4.2.0/irace/vignettes/irace-package.Rnw | 152 + irace-4.2.0/irace/vignettes/irace-package.bib | 35 irace-4.2.0/irace/vignettes/section/irace-options.Rnw | 133 - 89 files changed, 3708 insertions(+), 2833 deletions(-)
Title: Extract Event Statistics in Hydrologic Time Series
Description: Events from individual hydrologic time series are extracted, and events from multiple time series can be matched to each other.
Tang, W. & Carey, S. K. (2017) <doi:10.1002/hyp.11185>.
Kaur, S., Horne, A., Stewardson, M.J., Nathan, R., Costa, A.M., Szemis, J.M., & Webb, J.A. (2017) <doi:10.1080/24705357.2016.1276418>.
Ladson, A., Brown, R., Neal, B., & Nathan, R. J. (2013) <doi:10.7158/W12-028.2013.17.1>.
Author: Conrad Wasko [aut, cre],
Danlu Guo [aut]
Maintainer: Conrad Wasko <conrad.wasko@gmail.com>
Diff between hydroEvents versions 0.11 dated 2022-12-20 and 0.12.0 dated 2025-02-12
DESCRIPTION | 15 ++- MD5 | 28 +++--- NEWS.md | 9 +- R/data.R | 6 - R/eventBaseflow.R | 45 ++--------- R/eventMaxima.R | 4 R/limbs.R | 205 ++++++++++++++++++++++++++------------------------- R/plotEvents.R | 25 ++++-- R/plotPairs.R | 2 README.md | 18 ++-- man/WQ_Q.Rd | 6 - man/eventBaseflow.Rd | 8 - man/limbs.Rd | 8 + man/plotEvents.Rd | 8 + man/plotPairs.Rd | 2 15 files changed, 201 insertions(+), 188 deletions(-)
Title: Tree Ring Analysis of Disturbance Events in R
Description: Tree Ring Analysis of Disturbance Events in R (TRADER) package provides functions for disturbance reconstruction from tree-ring data, e.g. boundary line, absolute increase, growth averaging methods.
Author: Pavel Fibich [aut, cre],
Jan Altman [aut],
Tuomas Aakala [aut],
Jiri Dolezal [aut]
Maintainer: Pavel Fibich <pavel.fibich@prf.jcu.cz>
Diff between TRADER versions 1.2-5 dated 2024-11-27 and 1.2-6 dated 2025-02-12
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/trader.R | 17 +++++++++++------ 3 files changed, 17 insertions(+), 12 deletions(-)
Title: Simulation-Based Landscape Construction for Dynamical Systems
Description: A toolbox for constructing potential landscapes for dynamical
systems using Monte Carlo simulation. The method is based on the
potential landscape definition by Wang et al. (2008)
<doi:10.1073/pnas.0800579105> (also see Zhou & Li, 2016
<doi:10.1063/1.4943096> for further mathematical discussions) and can
be used for a large variety of models.
Author: Jingmeng Cui [aut, cre]
Maintainer: Jingmeng Cui <jingmeng.cui@outlook.com>
Diff between simlandr versions 0.3.1 dated 2024-01-23 and 0.4.0 dated 2025-02-12
simlandr-0.3.1/simlandr/R/utils-autolayer.R |only simlandr-0.4.0/simlandr/DESCRIPTION | 19 +- simlandr-0.4.0/simlandr/MD5 | 60 ++++--- simlandr-0.4.0/simlandr/NAMESPACE | 5 simlandr-0.4.0/simlandr/NEWS.md | 7 simlandr-0.4.0/simlandr/R/batch_simulation.R | 2 simlandr-0.4.0/simlandr/R/check_conv.R | 2 simlandr-0.4.0/simlandr/R/kernel_api.R | 24 ++- simlandr-0.4.0/simlandr/R/simulation.R |only simlandr-0.4.0/simlandr/R/single_simulation_landscape.R | 34 +++- simlandr-0.4.0/simlandr/R/test_function.R | 12 - simlandr-0.4.0/simlandr/R/utils-generic.R |only simlandr-0.4.0/simlandr/build/partial.rdb |binary simlandr-0.4.0/simlandr/build/vignette.rds |only simlandr-0.4.0/simlandr/inst/doc/barrier.R |only simlandr-0.4.0/simlandr/inst/doc/barrier.Rmd |only simlandr-0.4.0/simlandr/inst/doc/barrier.html |only simlandr-0.4.0/simlandr/inst/doc/landscape.R |only simlandr-0.4.0/simlandr/inst/doc/landscape.Rmd |only simlandr-0.4.0/simlandr/inst/doc/landscape.html |only simlandr-0.4.0/simlandr/inst/doc/simlandr.Rnw | 2 simlandr-0.4.0/simlandr/inst/doc/simlandr.pdf |binary simlandr-0.4.0/simlandr/inst/doc/simulation.R |only simlandr-0.4.0/simlandr/inst/doc/simulation.Rmd |only simlandr-0.4.0/simlandr/inst/doc/simulation.html |only simlandr-0.4.0/simlandr/man/as.mcmc.list.Rd |only simlandr-0.4.0/simlandr/man/as.mcmc.list.list.Rd |only simlandr-0.4.0/simlandr/man/autolayer.Rd | 18 +- simlandr-0.4.0/simlandr/man/batch_simulation.Rd | 128 ++++++++-------- simlandr-0.4.0/simlandr/man/check_conv.Rd | 74 ++++----- simlandr-0.4.0/simlandr/man/make_2d_static.Rd | 108 +++++++------ simlandr-0.4.0/simlandr/man/make_3d_static.Rd | 112 +++++++------- simlandr-0.4.0/simlandr/man/make_4d_static.Rd | 116 +++++++------- simlandr-0.4.0/simlandr/man/make_kernel_dist.Rd | 15 + simlandr-0.4.0/simlandr/man/multi_init_simulation.Rd |only simlandr-0.4.0/simlandr/man/sim_SDE.Rd |only simlandr-0.4.0/simlandr/man/sim_fun_test.Rd | 48 +++--- simlandr-0.4.0/simlandr/vignettes/barrier.Rmd |only simlandr-0.4.0/simlandr/vignettes/landscape.Rmd |only simlandr-0.4.0/simlandr/vignettes/simlandr.Rnw | 2 simlandr-0.4.0/simlandr/vignettes/simulation.Rmd |only 41 files changed, 438 insertions(+), 350 deletions(-)
Title: Bayesian Dynamic Borrowing Analysis and Simulation
Description: Bayesian dynamic borrowing is an approach to incorporating external
data to supplement a randomized, controlled trial analysis in which
external data are incorporated in a dynamic way (e.g., based on similarity
of outcomes); see Viele 2013 <doi:10.1002/pst.1589> for an overview.
This package implements the hierarchical commensurate prior approach to dynamic borrowing
as described in Hobbes 2011 <doi:10.1111/j.1541-0420.2011.01564.x>.
There are three main functionalities. First, 'psborrow2' provides a user-friendly
interface for applying dynamic borrowing on the study results handles the Markov Chain
Monte Carlo sampling on behalf of the user. Second, 'psborrow2' provides a
simulation framework to compare different borrowing parameters (e.g. full borrowing, no
borrowing, dynamic borrowing) and other trial and borrowing characteristics
(e.g. sample size, covariates) in a unified way. Third, 'psborrow2' provides
a set of functions to generate data for simulation studies, and a [...truncated...]
Author: Matt Secrest [aut, cre] ,
Isaac Gravestock [aut],
Craig Gower-Page [ctb],
Manoj Khanal [ctb],
Mingyang Shan [ctb],
Kexin Jin [ctb],
Zhi Yang [ctb],
Genentech, Inc. [cph, fnd]
Maintainer: Matt Secrest <secrestm@gene.com>
Diff between psborrow2 versions 0.0.3.4 dated 2024-04-30 and 0.0.4.0 dated 2025-02-12
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psborrow2-0.0.4.0/psborrow2/man/outcome_bin_logistic.Rd | 1 psborrow2-0.0.4.0/psborrow2/man/outcome_cont_normal.Rd | 27 - psborrow2-0.0.4.0/psborrow2/man/outcome_surv_exponential.Rd | 1 psborrow2-0.0.4.0/psborrow2/man/outcome_surv_pem.Rd |only psborrow2-0.0.4.0/psborrow2/man/outcome_surv_weibull_ph.Rd | 3 psborrow2-0.0.4.0/psborrow2/man/psborrow2-package.Rd | 2 psborrow2-0.0.4.0/psborrow2/tests/testthat/test-cast_mat_to_long_pem.R |only psborrow2-0.0.4.0/psborrow2/tests/testthat/test-create_analysis_obj.R | 13 psborrow2-0.0.4.0/psborrow2/tests/testthat/test-helpers.R | 49 + psborrow2-0.0.4.0/psborrow2/tests/testthat/test-mcmc_sample-analysis.R | 211 +++++++- psborrow2-0.0.4.0/psborrow2/tests/testthat/test-outcome_bin_logistic.R | 8 psborrow2-0.0.4.0/psborrow2/tests/testthat/test-outcome_cont_normal.R | 8 psborrow2-0.0.4.0/psborrow2/tests/testthat/test-outcome_surv_exponential.R | 14 psborrow2-0.0.4.0/psborrow2/tests/testthat/test-outcome_surv_pem.R |only psborrow2-0.0.4.0/psborrow2/tests/testthat/test-outcome_surv_weibull_ph.R | 14 psborrow2-0.0.4.0/psborrow2/tests/testthat/test-prepare_stan_data_inputs.R | 41 + psborrow2-0.0.4.0/psborrow2/vignettes/data_simulation.Rmd | 1 psborrow2-0.0.4.0/psborrow2/vignettes/dataset.Rmd | 89 +-- psborrow2-0.0.4.0/psborrow2/vignettes/figure-dataset-mcmc-hist-1.png |binary psborrow2-0.0.4.0/psborrow2/vignettes/figure-dataset-mcmc-trace-1.png |binary psborrow2-0.0.4.0/psborrow2/vignettes/figure-match_weight_01_methods-unnamed-chunk-28-1.png |binary psborrow2-0.0.4.0/psborrow2/vignettes/figure-match_weight_01_methods-unnamed-chunk-61-1.png |binary psborrow2-0.0.4.0/psborrow2/vignettes/figure-match_weight_01_methods-unnamed-chunk-62-1.png |binary psborrow2-0.0.4.0/psborrow2/vignettes/figure-match_weight_01_methods-unnamed-chunk-67-1.png |binary psborrow2-0.0.4.0/psborrow2/vignettes/figure-match_weight_02_application-unnamed-chunk-10-1.png |binary psborrow2-0.0.4.0/psborrow2/vignettes/figure-match_weight_02_application-unnamed-chunk-10-2.png |binary psborrow2-0.0.4.0/psborrow2/vignettes/figure-match_weight_02_application-unnamed-chunk-12-1.png |binary psborrow2-0.0.4.0/psborrow2/vignettes/figure-match_weight_02_application-unnamed-chunk-19-1.png |binary psborrow2-0.0.4.0/psborrow2/vignettes/figure-match_weight_02_application-unnamed-chunk-19-2.png |binary psborrow2-0.0.4.0/psborrow2/vignettes/figure-match_weight_02_application-unnamed-chunk-21-1.png |binary psborrow2-0.0.4.0/psborrow2/vignettes/figure-match_weight_02_application-unnamed-chunk-31-1.png |binary psborrow2-0.0.4.0/psborrow2/vignettes/figure-match_weight_02_application-unnamed-chunk-32-1.png |binary psborrow2-0.0.4.0/psborrow2/vignettes/figure-match_weight_02_application-unnamed-chunk-32-2.png |binary psborrow2-0.0.4.0/psborrow2/vignettes/figure-match_weight_02_application-unnamed-chunk-42-1.png |binary psborrow2-0.0.4.0/psborrow2/vignettes/figure-match_weight_02_application-unnamed-chunk-43-1.png |binary psborrow2-0.0.4.0/psborrow2/vignettes/figure-match_weight_02_application-unnamed-chunk-44-1.png |binary psborrow2-0.0.4.0/psborrow2/vignettes/figure-match_weight_02_application-unnamed-chunk-44-2.png |binary psborrow2-0.0.4.0/psborrow2/vignettes/figure-match_weight_02_application-unnamed-chunk-44-3.png |binary psborrow2-0.0.4.0/psborrow2/vignettes/figure-match_weight_02_application-unnamed-chunk-44-4.png |binary psborrow2-0.0.4.0/psborrow2/vignettes/figure-match_weight_02_application-unnamed-chunk-51-1.png |binary psborrow2-0.0.4.0/psborrow2/vignettes/figure-match_weight_02_application-unnamed-chunk-53-1.png |binary psborrow2-0.0.4.0/psborrow2/vignettes/figure-match_weight_02_application-unnamed-chunk-60-1.png |binary psborrow2-0.0.4.0/psborrow2/vignettes/figure-match_weight_02_application-unnamed-chunk-62-1.png |binary psborrow2-0.0.4.0/psborrow2/vignettes/figure-propensity_scores-balplot-1.png |binary psborrow2-0.0.4.0/psborrow2/vignettes/figure-propensity_scores-plots-1.png |binary psborrow2-0.0.4.0/psborrow2/vignettes/figure-simple_overview-unnamed-chunk-18-1.png |only psborrow2-0.0.4.0/psborrow2/vignettes/figure-simple_overview-unnamed-chunk-5-1.png |only psborrow2-0.0.4.0/psborrow2/vignettes/figure-simple_overview-unnamed-chunk-7-1.png |only psborrow2-0.0.4.0/psborrow2/vignettes/figure-simple_overview-unnamed-chunk-7-2.png |only psborrow2-0.0.4.0/psborrow2/vignettes/figure-simple_overview-unnamed-chunk-7-3.png |only psborrow2-0.0.4.0/psborrow2/vignettes/figure-simulation_study-unnamed-chunk-23-1.png |binary psborrow2-0.0.4.0/psborrow2/vignettes/figure-simulation_study-unnamed-chunk-24-1.png |binary psborrow2-0.0.4.0/psborrow2/vignettes/figure-simulation_study-unnamed-chunk-25-1.png |binary psborrow2-0.0.4.0/psborrow2/vignettes/figure-simulation_study-unnamed-chunk-26-1.png |binary psborrow2-0.0.4.0/psborrow2/vignettes/figure-simulation_study-unnamed-chunk-27-1.png |binary psborrow2-0.0.4.0/psborrow2/vignettes/figure-weighting-exp_plot-1.png |binary psborrow2-0.0.4.0/psborrow2/vignettes/figure-weighting-logistic_plot-1.png |binary psborrow2-0.0.4.0/psborrow2/vignettes/match_weight_01_methods.Rmd |only psborrow2-0.0.4.0/psborrow2/vignettes/match_weight_02_application.Rmd |only psborrow2-0.0.4.0/psborrow2/vignettes/propensity_scores.Rmd | 19 psborrow2-0.0.4.0/psborrow2/vignettes/psborrow2.Rmd | 2 psborrow2-0.0.4.0/psborrow2/vignettes/simple_overview.Rmd |only psborrow2-0.0.4.0/psborrow2/vignettes/simulation_study.Rmd | 26 psborrow2-0.0.4.0/psborrow2/vignettes/weighting.Rmd | 81 +-- 140 files changed, 1128 insertions(+), 965 deletions(-)
Title: Estimate Orientation of an Inertial Measurement Unit
Description: Estimate the orientation of an inertial measurement unit
(IMU) with a 3-axis accelerometer and a 3-axis gyroscope using a
complementary filter. 'imuf' takes an IMU's accelerometer and gyroscope
readings, time duration, its initial orientation, and a gain factor as
inputs, and returns an estimate of the IMU's final orientation.
Author: Felix Chan [aut, cre, cph],
Ricardo Cabello [cph]
Maintainer: Felix Chan <chanfelix@gmail.com>
Diff between imuf versions 0.5.1 dated 2025-01-15 and 0.6.0 dated 2025-02-12
DESCRIPTION | 9 ++++--- MD5 | 33 +++++++++++++++++++--------- NAMESPACE | 5 ++++ NEWS.md | 8 ++++++ R/imu_object.R |only build/vignette.rds |binary inst/doc/animate_imu.html | 4 +-- inst/doc/imu_object.R |only inst/doc/imu_object.Rmd |only inst/doc/imu_object.html |only inst/doc/imuf.Rmd | 2 - inst/doc/imuf.html | 2 - inst/htmlwidgets/animate_imu.js | 2 - inst/htmlwidgets/animate_imu.js.LICENSE.txt | 10 ++++---- inst/htmlwidgets/imu_object.js |only inst/htmlwidgets/imu_object.js.LICENSE.txt |only inst/htmlwidgets/imu_object.yaml |only man/imu_object-shiny.Rd |only man/imu_object-update.Rd |only man/imu_object.Rd |only tests/testthat/test-imu_object.R |only vignettes/imu_object.Rmd |only vignettes/imu_object_mov.mp4 |only vignettes/imuf.Rmd | 2 - 24 files changed, 52 insertions(+), 25 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-08-23 1.4.1
2024-06-25 1.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-08-27 0.0.1
Title: Generating Universally Unique Identificators
Description: Using the efficient implementation in the Boost C++ library, functions are
provided to generate vectors of 'Universally Unique Identifiers (UUID)' from R supporting
random (version 4), name (version 5) and time (version 7) 'UUIDs'. The initial repository
was at <https://gitlab.com/artemklevtsov/rcppuuid>.
Author: Artem Klevtsov [aut] ,
Dirk Eddelbuettel [aut, cre]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppUUID versions 1.1.2 dated 2025-01-31 and 1.2.0 dated 2025-02-12
RcppUUID-1.1.2/RcppUUID/NEWS.md |only RcppUUID-1.2.0/RcppUUID/ChangeLog |only RcppUUID-1.2.0/RcppUUID/DESCRIPTION | 20 +- RcppUUID-1.2.0/RcppUUID/MD5 | 21 +-- RcppUUID-1.2.0/RcppUUID/NAMESPACE | 1 RcppUUID-1.2.0/RcppUUID/R/RcppExports.R | 21 +++ RcppUUID-1.2.0/RcppUUID/R/RcppUUID-package.R | 6 RcppUUID-1.2.0/RcppUUID/README.md | 148 +++++++++++++--------- RcppUUID-1.2.0/RcppUUID/inst/NEWS.Rd |only RcppUUID-1.2.0/RcppUUID/inst/tinytest/test-uuid.R | 12 + RcppUUID-1.2.0/RcppUUID/man/RcppUUID.Rd | 20 +- RcppUUID-1.2.0/RcppUUID/man/uuid_generate_time.Rd |only RcppUUID-1.2.0/RcppUUID/src/RcppExports.cpp | 11 + RcppUUID-1.2.0/RcppUUID/src/uuid_time.cpp |only 14 files changed, 177 insertions(+), 83 deletions(-)
Title: Encapsulated Classes with Reference Semantics
Description: Creates classes with reference semantics, similar to R's
built-in reference classes. Compared to reference classes, R6 classes
are simpler and lighter-weight, and they are not built on S4 classes
so they do not require the methods package. These classes allow public
and private members, and they support inheritance, even when the
classes are defined in different packages.
Author: Winston Chang [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Winston Chang <winston@posit.co>
Diff between R6 versions 2.5.1 dated 2021-08-19 and 2.6.0 dated 2025-02-12
DESCRIPTION | 40 ++++++++----- LICENSE | 4 - MD5 | 43 ++++++++------ NAMESPACE | 1 NEWS.md | 17 +++++ R/R6-package.R |only R/clone.R | 4 + R/new.R | 24 ++++++-- R/r6_class.R | 27 +++++---- README.md | 10 +-- man/R6-package.Rd |only man/R6Class.Rd | 5 - tests/manual/encapsulation.R | 2 tests/manual/test-inheritance.R | 1 tests/testthat/test-aslist.R |only tests/testthat/test-clone.R | 23 +++++++ tests/testthat/test-cloning-inheritance.R |only tests/testthat/test-finalizer.R | 75 +++++++++++--------------- tests/testthat/test-is.R |only tests/testthat/test-nonportable-inheritance.R | 2 tests/testthat/test-nonportable.R | 2 tests/testthat/test-portable-inheritance.R | 6 -- tests/testthat/test-portable.R | 2 tests/testthat/test-s3-methods.R | 2 tests/testthat/test-set.R | 2 25 files changed, 169 insertions(+), 123 deletions(-)
Title: A 'Linter' for R Code
Description: Checks adherence to a given style, syntax errors and possible
semantic issues. Supports on the fly checking of R code edited with
'RStudio IDE', 'Emacs', 'Vim', 'Sublime Text', 'Atom' and 'Visual
Studio Code'.
Author: Jim Hester [aut],
Florent Angly [aut] ,
Russ Hyde [aut],
Michael Chirico [aut, cre],
Kun Ren [aut],
Alexander Rosenstock [aut] ,
Indrajeet Patil [aut]
Maintainer: Michael Chirico <michaelchirico4@gmail.com>
Diff between lintr versions 3.1.2 dated 2024-03-25 and 3.2.0 dated 2025-02-12
lintr-3.1.2/lintr/R/comment_linters.R |only lintr-3.1.2/lintr/R/comments.R |only lintr-3.1.2/lintr/R/extraction_operator_linter.R |only lintr-3.1.2/lintr/R/unnecessary_nested_if_linter.R |only lintr-3.1.2/lintr/build/lintr.pdf |only lintr-3.1.2/lintr/inst/example/complexity.R |only lintr-3.1.2/lintr/man/extraction_operator_linter.Rd |only lintr-3.1.2/lintr/man/unnecessary_nested_if_linter.Rd |only lintr-3.1.2/lintr/tests/testthat/test-closed_curly_linter.R |only lintr-3.1.2/lintr/tests/testthat/test-comments.R |only lintr-3.1.2/lintr/tests/testthat/test-expect_s4_class.R |only lintr-3.1.2/lintr/tests/testthat/test-open_curly_linter.R |only lintr-3.1.2/lintr/tests/testthat/test-paren_brace_linter.R |only lintr-3.1.2/lintr/tests/testthat/test-pipe-consistency-linter.R |only lintr-3.1.2/lintr/tests/testthat/testthat-problems.rds |only lintr-3.1.2/lintr/vignettes/vim-syntastic.gif |only lintr-3.2.0/lintr/DESCRIPTION | 86 - lintr-3.2.0/lintr/LICENSE | 4 lintr-3.2.0/lintr/MD5 | 699 +++++----- lintr-3.2.0/lintr/NAMESPACE | 39 lintr-3.2.0/lintr/NEWS.md | 101 + lintr-3.2.0/lintr/R/T_and_F_symbol_linter.R | 13 lintr-3.2.0/lintr/R/absolute_path_linter.R | 4 lintr-3.2.0/lintr/R/actions.R | 4 lintr-3.2.0/lintr/R/addins.R | 34 lintr-3.2.0/lintr/R/any_duplicated_linter.R | 15 lintr-3.2.0/lintr/R/any_is_na_linter.R | 30 lintr-3.2.0/lintr/R/assignment_linter.R | 137 + lintr-3.2.0/lintr/R/backport_linter.R | 72 - lintr-3.2.0/lintr/R/boolean_arithmetic_linter.R | 36 lintr-3.2.0/lintr/R/brace_linter.R | 15 lintr-3.2.0/lintr/R/cache.R | 9 lintr-3.2.0/lintr/R/class_equals_linter.R | 22 lintr-3.2.0/lintr/R/commas_linter.R | 9 lintr-3.2.0/lintr/R/commented_code_linter.R |only lintr-3.2.0/lintr/R/comparison_negation_linter.R |only lintr-3.2.0/lintr/R/condition_call_linter.R |only lintr-3.2.0/lintr/R/condition_message_linter.R | 19 lintr-3.2.0/lintr/R/conjunct_test_linter.R | 47 lintr-3.2.0/lintr/R/consecutive_assertion_linter.R | 36 lintr-3.2.0/lintr/R/consecutive_mutate_linter.R |only lintr-3.2.0/lintr/R/cyclocomp_linter.R | 24 lintr-3.2.0/lintr/R/deprecated.R | 20 lintr-3.2.0/lintr/R/duplicate_argument_linter.R | 6 lintr-3.2.0/lintr/R/equals_na_linter.R | 9 lintr-3.2.0/lintr/R/exclude.R | 64 lintr-3.2.0/lintr/R/expect_comparison_linter.R | 17 lintr-3.2.0/lintr/R/expect_identical_linter.R | 55 lintr-3.2.0/lintr/R/expect_length_linter.R | 22 lintr-3.2.0/lintr/R/expect_lint.R | 53 lintr-3.2.0/lintr/R/expect_named_linter.R | 21 lintr-3.2.0/lintr/R/expect_not_linter.R | 7 lintr-3.2.0/lintr/R/expect_null_linter.R | 23 lintr-3.2.0/lintr/R/expect_s3_class_linter.R | 29 lintr-3.2.0/lintr/R/expect_s4_class_linter.R | 18 lintr-3.2.0/lintr/R/expect_true_false_linter.R | 15 lintr-3.2.0/lintr/R/expect_type_linter.R | 30 lintr-3.2.0/lintr/R/extract.R | 12 lintr-3.2.0/lintr/R/fixed_regex_linter.R | 74 - lintr-3.2.0/lintr/R/function_argument_linter.R | 6 lintr-3.2.0/lintr/R/function_left_parentheses_linter.R | 6 lintr-3.2.0/lintr/R/function_return_linter.R | 8 lintr-3.2.0/lintr/R/get_source_expressions.R | 97 - lintr-3.2.0/lintr/R/ids_with_token.R | 13 lintr-3.2.0/lintr/R/if_not_else_linter.R | 33 lintr-3.2.0/lintr/R/if_switch_linter.R |only lintr-3.2.0/lintr/R/ifelse_censor_linter.R | 23 lintr-3.2.0/lintr/R/implicit_assignment_linter.R | 21 lintr-3.2.0/lintr/R/implicit_integer_linter.R | 20 lintr-3.2.0/lintr/R/indentation_linter.R | 20 lintr-3.2.0/lintr/R/infix_spaces_linter.R | 7 lintr-3.2.0/lintr/R/inner_combine_linter.R | 30 lintr-3.2.0/lintr/R/is_lint_level.R | 29 lintr-3.2.0/lintr/R/is_numeric_linter.R | 19 lintr-3.2.0/lintr/R/keyword_quote_linter.R | 20 lintr-3.2.0/lintr/R/length_levels_linter.R | 7 lintr-3.2.0/lintr/R/length_test_linter.R | 14 lintr-3.2.0/lintr/R/lengths_linter.R | 16 lintr-3.2.0/lintr/R/library_call_linter.R | 216 ++- lintr-3.2.0/lintr/R/line_length_linter.R | 6 lintr-3.2.0/lintr/R/lint.R | 211 +-- lintr-3.2.0/lintr/R/linter_tag_docs.R | 20 lintr-3.2.0/lintr/R/linter_tags.R | 40 lintr-3.2.0/lintr/R/lintr-deprecated.R | 258 +-- lintr-3.2.0/lintr/R/lintr-package.R | 21 lintr-3.2.0/lintr/R/list_comparison_linter.R |only lintr-3.2.0/lintr/R/literal_coercion_linter.R | 39 lintr-3.2.0/lintr/R/make_linter_from_regex.R | 18 lintr-3.2.0/lintr/R/make_linter_from_xpath.R | 46 lintr-3.2.0/lintr/R/matrix_apply_linter.R | 44 lintr-3.2.0/lintr/R/methods.R | 93 - lintr-3.2.0/lintr/R/missing_argument_linter.R | 26 lintr-3.2.0/lintr/R/missing_package_linter.R | 43 lintr-3.2.0/lintr/R/namespace.R | 20 lintr-3.2.0/lintr/R/namespace_linter.R | 13 lintr-3.2.0/lintr/R/nested_ifelse_linter.R | 18 lintr-3.2.0/lintr/R/nested_pipe_linter.R |only lintr-3.2.0/lintr/R/nonportable_path_linter.R | 13 lintr-3.2.0/lintr/R/nrow_subset_linter.R |only lintr-3.2.0/lintr/R/nzchar_linter.R |only lintr-3.2.0/lintr/R/object_length_linter.R | 6 lintr-3.2.0/lintr/R/object_name_linter.R | 35 lintr-3.2.0/lintr/R/object_overwrite_linter.R |only lintr-3.2.0/lintr/R/object_usage_linter.R | 29 lintr-3.2.0/lintr/R/one_call_pipe_linter.R |only lintr-3.2.0/lintr/R/outer_negation_linter.R | 16 lintr-3.2.0/lintr/R/package_hooks_linter.R | 19 lintr-3.2.0/lintr/R/paren_body_linter.R | 2 lintr-3.2.0/lintr/R/paste_linter.R | 116 - lintr-3.2.0/lintr/R/path_utils.R | 24 lintr-3.2.0/lintr/R/pipe_call_linter.R | 6 lintr-3.2.0/lintr/R/pipe_consistency_linter.R | 9 lintr-3.2.0/lintr/R/pipe_continuation_linter.R | 7 lintr-3.2.0/lintr/R/pipe_return_linter.R |only lintr-3.2.0/lintr/R/print_linter.R |only lintr-3.2.0/lintr/R/quotes_linter.R | 8 lintr-3.2.0/lintr/R/redundant_equals_linter.R | 17 lintr-3.2.0/lintr/R/redundant_ifelse_linter.R | 51 lintr-3.2.0/lintr/R/regex_subset_linter.R | 37 lintr-3.2.0/lintr/R/rep_len_linter.R |only lintr-3.2.0/lintr/R/repeat_linter.R | 6 lintr-3.2.0/lintr/R/return_linter.R |only lintr-3.2.0/lintr/R/routine_registration_linter.R | 20 lintr-3.2.0/lintr/R/sample_int_linter.R |only lintr-3.2.0/lintr/R/scalar_in_linter.R | 46 lintr-3.2.0/lintr/R/semicolon_linter.R | 16 lintr-3.2.0/lintr/R/seq_linter.R | 29 lintr-3.2.0/lintr/R/settings.R | 167 +- lintr-3.2.0/lintr/R/settings_utils.R | 9 lintr-3.2.0/lintr/R/shared_constants.R | 77 - lintr-3.2.0/lintr/R/sort_linter.R | 38 lintr-3.2.0/lintr/R/source_utils.R |only lintr-3.2.0/lintr/R/spaces_inside_linter.R | 6 lintr-3.2.0/lintr/R/sprintf_linter.R | 36 lintr-3.2.0/lintr/R/stopifnot_all_linter.R |only lintr-3.2.0/lintr/R/string_boundary_linter.R | 93 - lintr-3.2.0/lintr/R/strings_as_factors_linter.R | 63 lintr-3.2.0/lintr/R/system_file_linter.R | 27 lintr-3.2.0/lintr/R/terminal_close_linter.R |only lintr-3.2.0/lintr/R/todo_comment_linter.R |only lintr-3.2.0/lintr/R/trailing_blank_lines_linter.R | 17 lintr-3.2.0/lintr/R/trailing_whitespace_linter.R | 8 lintr-3.2.0/lintr/R/tree_utils.R | 4 lintr-3.2.0/lintr/R/undesirable_function_linter.R | 27 lintr-3.2.0/lintr/R/undesirable_operator_linter.R | 15 lintr-3.2.0/lintr/R/unnecessary_concatenation_linter.R | 36 lintr-3.2.0/lintr/R/unnecessary_lambda_linter.R | 124 + lintr-3.2.0/lintr/R/unnecessary_nesting_linter.R |only lintr-3.2.0/lintr/R/unnecessary_placeholder_linter.R | 8 lintr-3.2.0/lintr/R/unreachable_code_linter.R | 67 lintr-3.2.0/lintr/R/unused_import_linter.R | 38 lintr-3.2.0/lintr/R/use_lintr.R | 6 lintr-3.2.0/lintr/R/utils.R | 132 - 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Title: Identify the Racial Complex of Native Corns from Mexico
Description: A model that provides researchers with a powerful tool for the classification
and study of native corn by aiding in the identification of racial complexes
which are fundamental to Mexico's agriculture and culture. This package has been
developed based on data collected by "Proyecto Global de Maíces Nativos México",
which has conducted exhaustive surveys across the country to document the
qualitative and quantitative characteristics of different types of native maize.
The trained model uses a robust and diverse dataset, enabling it to achieve an
80% accuracy in classifying maize racial complexes. The characteristics included
in the analysis comprise geographic location, grain and cob colors, as well as
various physical measurements, such as lengths and widths.
Author: Rafael Nieves-Alvarez [aut, cre]
,
Arturo Sanchez-Porras [aut, cph]
,
Aline Romero-Natale [aut] ,
Otilio Arturo Acevedo-Sandoval [aut]
Maintainer: Rafael Nieves-Alvarez <nievesalvarez1618@gmail.com>
Diff between imanr versions 1.0.2 dated 2024-06-23 and 2.0.0 dated 2025-02-12
DESCRIPTION | 12 ++++----- MD5 | 32 +++++++++++++------------- NAMESPACE | 7 ++++- NEWS.md | 15 ++++++++++++ R/find_racialcomplex.R | 25 ++++++++++++++------ R/impute_data.R | 8 ++---- R/initialize_model.R |only R/sysdata.rda |binary R/zzz.R |only README.md | 4 +-- inst/doc/imanr.R | 28 +++++++++++----------- inst/doc/imanr.Rmd | 8 +++--- inst/doc/imanr.html | 38 ++++++++++--------------------- man/find_racial_complex.Rd | 8 ++++-- man/impute_data.Rd | 2 - tests/testthat/test-find_racialcomplex.R | 20 +++------------- tests/testthat/test-impute_data.R | 2 - vignettes/imanr.Rmd | 8 +++--- 18 files changed, 111 insertions(+), 106 deletions(-)
Title: Extract and Analyze Rivers from Elevation Data
Description: Seamless extraction of river networks from digital
elevation models data. The package allows analysis of digital
elevation models that can be either externally provided or
downloaded from open source repositories (thus interfacing
with the 'elevatr' package). Extraction is performed via the
'D8' flow direction algorithm of TauDEM (Terrain Analysis Using
Digital Elevation Models), thus interfacing with the 'traudem'
package. Resulting river networks are compatible with functions
from the 'OCNet' package. See Carraro (2023)
<doi:10.5194/hess-27-3733-2023> for a presentation of the package.
Author: Luca Carraro [cre, aut],
University of Zurich [cph, fnd]
Maintainer: Luca Carraro <luca.carraro@hotmail.it>
Diff between rivnet versions 0.5.0 dated 2024-09-23 and 0.6.0 dated 2025-02-12
DESCRIPTION | 7 +- MD5 | 19 ++++-- NAMESPACE | 2 NEWS.md | 7 ++ R/RcppExports.R | 36 +++++++++++ R/riverweight_functions.R |only data |only inst/doc/rivnet.html | 10 +-- man/figures |only man/get_riverweight.Rd |only man/rast_riverweight.Rd |only man/wigger.Rd |only src/RcppExports.cpp | 144 ++++++++++++++++++++++++++++++++++++++++++++++ src/riverweight_src.cpp |only 14 files changed, 211 insertions(+), 14 deletions(-)
Title: Fast and Exact Computation of Gaussian Stochastic Process
Description: Implements fast and exact computation of Gaussian stochastic process with the Matern kernel using forward filtering and backward smoothing algorithm. It includes efficient implementations of the inverse Kalman filter, with applications such as estimating particle interaction functions. These tools support models with or without noise. Additionally, the package offers algorithms for fast parameter estimation in latent factor models, where the factor loading matrix is orthogonal, and latent processes are modeled by Gaussian processes. See the references: 1) Mengyang Gu and Yanxun Xu (2020), Journal of Computational and Graphical Statistics; 2) Xinyi Fang and Mengyang Gu (2024), <doi:10.48550/arXiv.2407.10089>; 3) Mengyang Gu and Weining Shen (2020), Journal of Machine Learning Research; 4) Yizi Lin, Xubo Liu, Paul Segall and Mengyang Gu (2025), <doi:10.48550/arXiv.2501.01324>.
Author: Mengyang Gu [aut, cre],
Xinyi Fang [aut],
Yizi Lin [aut]
Maintainer: Mengyang Gu <mengyang@pstat.ucsb.edu>
Diff between FastGaSP versions 0.5.3 dated 2024-04-26 and 0.6.0 dated 2025-02-12
CHANGELOG | 4 DESCRIPTION | 24 MD5 | 59 + NAMESPACE | 9 R/RcppExports.R | 98 ++ R/functions.R | 373 +++++++++ R/internal_functions.R |only R/particle_functions.R |only R/structure.R | 543 ++++++++++++++ build/partial.rdb |binary man/A_t_times_x_particle.Rd |only man/A_times_x_particle.Rd |only man/Get_L_inv_y.Rd | 14 man/Get_L_t_inv_y.Rd |only man/Get_L_t_y.Rd |only man/Get_L_y.Rd |only man/Get_Q_K.Rd |only man/Get_R_y.Rd |only man/Get_log_det_S2.Rd | 7 man/IKF_CG_particle.Rd |only man/IKF_CG_particle_cell.Rd |only man/Vicsek.Rd |only man/extract_time_window.Rd |only man/f_Vicsek_variation.Rd |only man/fit.Rd |only man/fit.fmou,fmou-method.Rd |only man/fit.gppca,gppca-method.Rd |only man/fit.particle.data.Rd |only man/fmou-class.Rd |only man/fmou.Rd |only man/get_consecutive_data.Rd |only man/gppca-class.Rd |only man/gppca.Rd |only man/log_lik.Rd | 11 man/particle.data-class.Rd |only man/particle.est-class.Rd |only man/predict.fmou,fmou-method.Rd |only man/predict.gppca,gppca-method.Rd |only man/show.fgasp.Rd | 5 man/show.particle.data.Rd |only man/show.particle.est.Rd |only man/simulate_particle.Rd |only man/trajectory_data.Rd |only src/RcppExports.cpp | 353 +++++++++ src/functions.cpp | 1462 +++++++++++++++++++++++++++++++++++++- src/init.c | 68 + 46 files changed, 2962 insertions(+), 68 deletions(-)
Title: Additions and Extensions of the 'VGAM' Package
Description: Extending the functionalities of the 'VGAM' package with
additional functions and datasets. At present, 'VGAMextra'
comprises new family functions (ffs) to estimate several time
series models by maximum likelihood using Fisher scoring,
unlike popular packages in CRAN relying on optim(), including
ARMA-GARCH-like models, the Order-(p, d, q) ARIMAX model (non-
seasonal), the Order-(p) VAR model, error correction models
for cointegrated time series, and ARMA-structures with Student-t
errors. For independent data, new ffs to estimate the inverse-
Weibull, the inverse-gamma, the generalized beta of the second
kind and the general multivariate normal distributions are
available. In addition, 'VGAMextra' incorporates new VGLM-links
for the mean-function, and the quantile-function (as an alternative
to ordinary quantile modelling) of several 1-parameter distributions,
that are compatible with the class of VGLM/VGAM family functions.
Currently, only fixed-effects models are implemented. All fun [...truncated...]
Author: Victor Miranda [aut, cre, cph],
Thomas Yee [ctb, ths, cph]
Maintainer: Victor Miranda <victor.miranda@aut.ac.nz>
Diff between VGAMextra versions 0.0-6 dated 2023-10-30 and 0.0-7 dated 2025-02-12
DESCRIPTION | 10 - MD5 | 26 ++-- NEWS | 11 + R/InfoAttach.R | 2 R/TSfamilyARIMAX.R | 261 ++++++++++++++++++++++++++++------------------- R/TSfamilyARMAX.R | 230 ++++++++++++++++++++++------------------- man/ARIMAXff.Rd | 2 man/Q.reg.Rd | 7 - man/VGAMextra-package.Rd | 3 man/gen.betaIImr.Rd | 36 +++--- man/invgamma2mr.Rd | 15 +- man/invweibull2mr.Rd | 3 man/trunclognormalff.Rd | 8 - man/truncnormalff.Rd | 8 - 14 files changed, 361 insertions(+), 261 deletions(-)
Title: Preprocessing and Feature Engineering Steps for Modeling
Description: A recipe prepares your data for modeling. We provide an
extensible framework for pipeable sequences of feature engineering
steps provides preprocessing tools to be applied to data. Statistical
parameters for the steps can be estimated from an initial data set and
then applied to other data sets. The resulting processed output can
then be used as inputs for statistical or machine learning models.
Author: Max Kuhn [aut, cre],
Hadley Wickham [aut],
Emil Hvitfeldt [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Max Kuhn <max@posit.co>
Diff between recipes versions 1.1.0 dated 2024-07-04 and 1.1.1 dated 2025-02-12
DESCRIPTION | 17 MD5 | 645 +++++++++++----------- NAMESPACE | 8 NEWS.md | 10 R/BoxCox.R | 2 R/YeoJohnson.R | 8 R/bin2factor.R | 4 R/case_weights.R | 10 R/class.R | 2 R/classdist.R | 7 R/classdist_shrunken.R | 4 R/colcheck.R | 3 R/corr.R | 8 R/count.R | 11 R/cut.R | 33 - R/date.R | 12 R/depth.R | 6 R/discretize.R | 25 R/dummy.R | 135 +++- R/dummy_extract.R | 25 R/dummy_multi_choice.R | 52 - R/extract_parameter.R | 15 R/filter_missing.R | 1 R/hyperbolic.R | 8 R/ica.R | 1 R/import-standalone-obj-type.R | 11 R/import-standalone-types-check.R | 17 R/impute_bag.R | 6 R/impute_knn.R | 7 R/impute_linear.R | 6 R/impute_mean.R | 7 R/impute_roll.R | 14 R/integer.R | 2 R/interact.R | 20 R/inverse.R | 1 R/isomap.R | 6 R/kpca.R | 2 R/kpca_poly.R | 8 R/kpca_rbf.R | 6 R/lag.R | 1 R/lincomb.R | 1 R/log.R | 3 R/logit.R | 1 R/misc.R | 95 ++- R/mutate_at.R | 4 R/newvalues.R | 1 R/nnmf.R | 6 R/nnmf_sparse.R | 10 R/normalize.R | 1 R/novel.R | 6 R/num2factor.R | 1 R/nzv.R | 4 R/ordinalscore.R | 1 R/other.R | 20 R/pca.R | 13 R/pls.R | 5 R/poly.R | 7 R/poly_bernstein.R | 2 R/profile.R | 4 R/range.R | 9 R/ratio.R | 1 R/recipe.R | 326 ++++++----- R/recipes-package.R | 3 R/regex.R | 13 R/relevel.R | 10 R/relu.R | 18 R/rename_at.R | 4 R/sample.R | 15 R/scale.R | 15 R/selections.R | 6 R/sparsevctrs.R |only R/spatialsign.R | 1 R/spline_b.R | 5 R/spline_convex.R | 2 R/spline_helpers.R | 10 R/spline_monotone.R | 3 R/spline_natural.R | 2 R/spline_nonnegative.R | 3 R/steps_and_checks.R | 27 R/string2factor.R | 6 R/tidy.R | 23 R/time.R | 35 - R/tune_args.R | 19 R/unknown.R | 1 R/update.R | 10 R/window.R | 51 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/Dummies.R | 12 inst/doc/Dummies.html | 31 - inst/doc/Roles.R | 2 inst/doc/Roles.html | 5 inst/doc/Selecting_Variables.html | 3 inst/doc/Skipping.html | 3 inst/doc/recipes.R | 8 inst/doc/recipes.html | 3 man/bake.Rd | 67 +- man/dot-recipes_estimate_sparsity.Rd |only man/dot-recipes_toggle_sparse_args.Rd |only man/juice.Rd | 17 man/names0.Rd | 7 man/prep.Rd | 71 +- man/recipe.Rd | 49 - man/rmd/non-standard-roles.Rmd | 2 man/rmd/selections.Rmd | 7 man/roles.Rd | 11 man/selections.Rd | 16 man/sparse_data.Rd |only man/step.Rd | 7 man/step_classdist.Rd | 2 man/step_classdist_shrunken.Rd | 2 man/step_date.Rd | 2 man/step_dummy.Rd | 9 man/step_dummy_extract.Rd | 8 man/step_impute_roll.Rd | 2 man/step_isomap.Rd | 4 man/step_kpca_poly.Rd | 3 man/step_kpca_rbf.Rd | 3 man/step_novel.Rd | 5 man/step_poly.Rd | 2 man/step_range.Rd | 7 man/step_scale.Rd | 2 man/step_string2factor.Rd | 2 tests/testthat/_snaps/BoxCox.md | 24 tests/testthat/_snaps/R4.4 |only tests/testthat/_snaps/YeoJohnson.md | 38 + tests/testthat/_snaps/basics.md | 98 +++ tests/testthat/_snaps/bin2factor.md | 19 tests/testthat/_snaps/bs.md | 8 tests/testthat/_snaps/case-weight-functions.md | 10 tests/testthat/_snaps/center.md | 8 tests/testthat/_snaps/class.md | 24 tests/testthat/_snaps/classdist.md | 72 ++ tests/testthat/_snaps/classdist_shrunken.md | 28 tests/testthat/_snaps/colcheck.md | 24 tests/testthat/_snaps/corr.md | 36 + tests/testthat/_snaps/count.md | 47 + tests/testthat/_snaps/cut.md | 39 + tests/testthat/_snaps/date.md | 68 ++ tests/testthat/_snaps/depth.md | 28 tests/testthat/_snaps/discretize.md | 38 + tests/testthat/_snaps/dummy.md | 51 + tests/testthat/_snaps/dummy_extract.md | 58 + tests/testthat/_snaps/dummy_multi_choice.md | 28 tests/testthat/_snaps/extract_parameter.md |only tests/testthat/_snaps/factor2string.md | 8 tests/testthat/_snaps/filter_missing.md | 10 tests/testthat/_snaps/geodist.md | 8 tests/testthat/_snaps/harmonic.md | 8 tests/testthat/_snaps/holiday.md | 17 tests/testthat/_snaps/hyperbolic.md | 27 tests/testthat/_snaps/ica.md | 27 tests/testthat/_snaps/impute_bag.md | 49 + tests/testthat/_snaps/impute_knn.md | 57 + tests/testthat/_snaps/impute_linear.md | 35 + tests/testthat/_snaps/impute_lower.md | 8 tests/testthat/_snaps/impute_mean.md | 18 tests/testthat/_snaps/impute_median.md | 8 tests/testthat/_snaps/impute_mode.md | 8 tests/testthat/_snaps/impute_roll.md | 39 + tests/testthat/_snaps/indicate_na.md | 8 tests/testthat/_snaps/integer.md | 28 tests/testthat/_snaps/interact.md | 20 tests/testthat/_snaps/inverse.md | 18 tests/testthat/_snaps/invlogit.md | 8 tests/testthat/_snaps/isomap.md | 28 tests/testthat/_snaps/kpca.md | 38 + tests/testthat/_snaps/kpca_poly.md | 68 ++ tests/testthat/_snaps/kpca_rbf.md | 48 + tests/testthat/_snaps/lag.md | 17 tests/testthat/_snaps/lincomb.md | 9 tests/testthat/_snaps/log.md | 35 + tests/testthat/_snaps/logit.md | 17 tests/testthat/_snaps/matrix.md | 4 tests/testthat/_snaps/misc.md | 49 + tests/testthat/_snaps/missing.md | 8 tests/testthat/_snaps/mutate_at.md | 9 tests/testthat/_snaps/naomit.md | 8 tests/testthat/_snaps/newvalues.md | 17 tests/testthat/_snaps/nnmf_sparse.md | 56 + tests/testthat/_snaps/nomial_types.md | 10 tests/testthat/_snaps/normalize.md | 18 tests/testthat/_snaps/novel.md | 17 tests/testthat/_snaps/ns.md | 8 tests/testthat/_snaps/num2factor.md | 17 tests/testthat/_snaps/nzv.md | 18 tests/testthat/_snaps/ordinalscore.md | 18 tests/testthat/_snaps/other.md | 20 tests/testthat/_snaps/pca.md | 43 + tests/testthat/_snaps/percentile.md | 8 tests/testthat/_snaps/pls.md | 55 + tests/testthat/_snaps/poly.md | 25 tests/testthat/_snaps/poly_bernstein.md | 28 tests/testthat/_snaps/profile.md | 9 tests/testthat/_snaps/range.md | 36 + tests/testthat/_snaps/range_check.md | 8 tests/testthat/_snaps/ratio.md | 27 tests/testthat/_snaps/regex.md | 36 + tests/testthat/_snaps/relevel.md | 19 tests/testthat/_snaps/relu.md | 11 tests/testthat/_snaps/rename_at.md | 19 tests/testthat/_snaps/rm.md | 2 tests/testthat/_snaps/sample.md | 19 tests/testthat/_snaps/scale.md | 20 tests/testthat/_snaps/select.md | 8 tests/testthat/_snaps/selections.md | 9 tests/testthat/_snaps/shuffle.md | 8 tests/testthat/_snaps/sparsevctrs.md |only tests/testthat/_snaps/sparsity.md | 6 tests/testthat/_snaps/spatialsign.md | 17 tests/testthat/_snaps/spline_b.md | 36 + tests/testthat/_snaps/spline_convex.md | 28 tests/testthat/_snaps/spline_monotone.md | 38 + tests/testthat/_snaps/spline_natural.md | 28 tests/testthat/_snaps/spline_nonnegative.md | 38 + tests/testthat/_snaps/sqrt.md | 8 tests/testthat/_snaps/string2factor.md | 11 tests/testthat/_snaps/stringsAsFactors.md | 4 tests/testthat/_snaps/tidy.md | 8 tests/testthat/_snaps/time.md | 19 tests/testthat/_snaps/tune_args.md |only tests/testthat/_snaps/unknown.md | 21 tests/testthat/_snaps/unorder.md | 8 tests/testthat/_snaps/update-role-requirements.md | 8 tests/testthat/_snaps/update.md | 12 tests/testthat/_snaps/window.md | 73 +- tests/testthat/helper-sparsevctrs.R |only tests/testthat/test-BoxCox.R | 11 tests/testthat/test-YeoJohnson.R | 30 - tests/testthat/test-basics.R | 117 +++ tests/testthat/test-bin2factor.R | 7 tests/testthat/test-bs.R | 8 tests/testthat/test-case-weight-functions.R | 12 tests/testthat/test-center.R | 7 tests/testthat/test-class.R | 34 - tests/testthat/test-classdist.R | 57 + tests/testthat/test-classdist_shrunken.R | 21 tests/testthat/test-colcheck.R | 54 + tests/testthat/test-corr.R | 32 + tests/testthat/test-count.R | 40 + tests/testthat/test-cut.R | 54 + tests/testthat/test-date.R | 71 ++ tests/testthat/test-depth.R | 27 tests/testthat/test-discretize.R | 26 tests/testthat/test-dummy.R | 118 +++- tests/testthat/test-dummy_extract.R | 43 + tests/testthat/test-dummy_multi_choice.R | 29 tests/testthat/test-extract_parameter.R |only tests/testthat/test-factor2string.R | 3 tests/testthat/test-filter.R | 5 tests/testthat/test-filter_missing.R | 12 tests/testthat/test-geodist.R | 12 tests/testthat/test-harmonic.R | 8 tests/testthat/test-holiday.R | 16 tests/testthat/test-hyperbolic.R | 11 tests/testthat/test-ica.R | 42 + tests/testthat/test-impute_bag.R | 48 + tests/testthat/test-impute_knn.R | 52 + tests/testthat/test-impute_linear.R | 35 + tests/testthat/test-impute_lower.R | 6 tests/testthat/test-impute_mean.R | 17 tests/testthat/test-impute_median.R | 3 tests/testthat/test-impute_mode.R | 3 tests/testthat/test-impute_roll.R | 37 + tests/testthat/test-indicate_na.R | 8 tests/testthat/test-integer.R | 22 tests/testthat/test-interact.R | 46 + tests/testthat/test-inverse.R | 12 tests/testthat/test-invlogit.R | 6 tests/testthat/test-isomap.R | 29 tests/testthat/test-kpca.R | 42 + tests/testthat/test-kpca_poly.R | 60 +- tests/testthat/test-kpca_rbf.R | 49 + tests/testthat/test-lag.R | 15 tests/testthat/test-lincomb.R | 10 tests/testthat/test-log.R | 25 tests/testthat/test-logit.R | 12 tests/testthat/test-misc.R | 89 +++ tests/testthat/test-missing.R | 5 tests/testthat/test-mutate.R | 5 tests/testthat/test-mutate_at.R | 4 tests/testthat/test-naomit.R | 3 tests/testthat/test-newvalues.R | 32 - tests/testthat/test-nnmf_sparse.R | 63 +- tests/testthat/test-nomial_types.R | 5 tests/testthat/test-normalize.R | 14 tests/testthat/test-novel.R | 9 tests/testthat/test-ns.R | 8 tests/testthat/test-num2factor.R | 9 tests/testthat/test-nzv.R | 16 tests/testthat/test-ordinalscore.R | 14 tests/testthat/test-other.R | 19 tests/testthat/test-pca.R | 36 + tests/testthat/test-percentile.R | 6 tests/testthat/test-pls.R | 57 + tests/testthat/test-poly.R | 24 tests/testthat/test-poly_bernstein.R | 20 tests/testthat/test-profile.R | 8 tests/testthat/test-range.R | 35 + tests/testthat/test-range_check.R | 15 tests/testthat/test-ratio.R | 27 tests/testthat/test-regex.R | 40 + tests/testthat/test-relevel.R | 8 tests/testthat/test-relu.R | 3 tests/testthat/test-rename_at.R | 11 tests/testthat/test-rm.R | 5 tests/testthat/test-sample.R | 13 tests/testthat/test-scale.R | 8 tests/testthat/test-select.R | 3 tests/testthat/test-selections.R | 31 - tests/testthat/test-shuffle.R | 3 tests/testthat/test-skipping.R | 3 tests/testthat/test-slice.R | 10 tests/testthat/test-sparsevctrs.R |only tests/testthat/test-spatialsign.R | 13 tests/testthat/test-spline_b.R | 28 tests/testthat/test-spline_convex.R | 22 tests/testthat/test-spline_monotone.R | 28 tests/testthat/test-spline_natural.R | 20 tests/testthat/test-spline_nonnegative.R | 28 tests/testthat/test-sqrt.R | 3 tests/testthat/test-string2factor.R | 5 tests/testthat/test-time.R | 23 tests/testthat/test-tune_args.R |only tests/testthat/test-unknown.R | 7 tests/testthat/test-unorder.R | 6 tests/testthat/test-update-role-requirements.R | 5 tests/testthat/test-update.R | 22 tests/testthat/test-window.R | 47 + 329 files changed, 5657 insertions(+), 1493 deletions(-)
Title: Inverse Distance Weighted Percent Land Use for Streams
Description: Compute spatially explicit land-use metrics for stream survey sites in GRASS GIS and R as an open-source implementation of IDW-PLUS (Inverse Distance Weighted Percent Land Use for Streams). The package includes functions for preprocessing digital elevation and streams data, and one function to compute all the spatially explicit land use metrics described in Peterson et al. (2011) <doi:10.1111/j.1365-2427.2010.02507.x> and previously implemented by Peterson and Pearse (2017) <doi:10.1111/1752-1688.12558> in ArcGIS-Python as IDW-PLUS.
Author: Alan Pearse [aut, cre],
Grace Heron [aut],
Erin Peterson [aut]
Maintainer: Alan Pearse <alan.pearse@unimelb.edu.au>
Diff between rdwplus versions 1.0.0 dated 2023-08-22 and 1.0.1 dated 2025-02-12
DESCRIPTION | 16 ++++++++-------- MD5 | 4 ++-- man/rdwplus-package.Rd | 2 +- 3 files changed, 11 insertions(+), 11 deletions(-)
Title: NASCAR Race Data
Description: A collection of NASCAR race, driver, owner and manufacturer data across the three major NASCAR divisions: NASCAR Cup Series, NASCAR Xfinity Series, and NASCAR Craftsman Truck Series. The curated data begins with the 1949 season and extends through the end of the 2024 season. Explore race, season, or career performance for drivers, teams, and manufacturers throughout NASCAR's history. Data was sourced with permission from DriverAverages.com.
Author: Kyle Grealis [aut, cre] ,
Nick Triplett [ctb],
Gabriel Odom [ctb]
Maintainer: Kyle Grealis <kylegrealis@icloud.com>
Diff between nascaR.data versions 2.1.0 dated 2025-01-20 and 2.2.0 dated 2025-02-12
nascaR.data-2.1.0/nascaR.data/inst/extdata |only nascaR.data-2.2.0/nascaR.data/DESCRIPTION | 20 ++++++--- nascaR.data-2.2.0/nascaR.data/MD5 | 32 ++++++--------- nascaR.data-2.2.0/nascaR.data/NEWS.md | 13 +++++- nascaR.data-2.2.0/nascaR.data/R/data.R | 9 ++-- nascaR.data-2.2.0/nascaR.data/R/get_driver.R | 1 nascaR.data-2.2.0/nascaR.data/R/get_team.R | 2 nascaR.data-2.2.0/nascaR.data/README.md | 2 nascaR.data-2.2.0/nascaR.data/data/cup_series.rda |binary nascaR.data-2.2.0/nascaR.data/data/truck_series.rda |binary nascaR.data-2.2.0/nascaR.data/data/xfinity_series.rda |binary nascaR.data-2.2.0/nascaR.data/man/cup_series.Rd | 3 - nascaR.data-2.2.0/nascaR.data/man/nascaR.data-package.Rd | 4 - nascaR.data-2.2.0/nascaR.data/man/truck_series.Rd | 3 - nascaR.data-2.2.0/nascaR.data/man/xfinity_series.Rd | 3 - 15 files changed, 54 insertions(+), 38 deletions(-)
Title: Latin Hypercube Designs (LHDs)
Description: Contains different algorithms and construction methods for optimal Latin hypercube designs (LHDs) with flexible sizes. Our package is comprehensive since it is capable of generating maximin distance LHDs, maximum projection LHDs, and orthogonal and nearly orthogonal LHDs. Detailed comparisons and summary of all the algorithms and construction methods in this package can be found at Hongzhi Wang, Qian Xiao and Abhyuday Mandal (2021) <doi:10.48550/arXiv.2010.09154>. This package is particularly useful in the area of Design and Analysis of Experiments (DAE). More specifically, design of computer experiments.
Author: Hongzhi Wang [aut, cre],
Qian Xiao [aut],
Abhyuday Mandal [aut]
Maintainer: Hongzhi Wang <wanghongzhi.ut@gmail.com>
Diff between LHD versions 1.4.0 dated 2024-09-10 and 1.4.1 dated 2025-02-12
DESCRIPTION | 6 +++--- MD5 | 9 +++++---- NEWS.md | 4 ++++ build/vignette.rds |binary inst/LICENSE.md |only inst/doc/Vignette_for_LHD.html | 2 +- 6 files changed, 13 insertions(+), 8 deletions(-)
Title: Multimodal Single-Cell Omics Dimensionality Reduction
Description: Methods to perform Joint graph Regularized Single-Cell Kullback-Leibler Sparse Non-negative Matrix Factorization ('jrSiCKLSNMF', pronounced "junior sickles NMF") on quality controlled single-cell multimodal omics count data. 'jrSiCKLSNMF' specifically deals with dual-assay scRNA-seq and scATAC-seq data. This package contains functions to extract meaningful latent factors that are shared across omics modalities. These factors enable accurate cell-type clustering and facilitate visualizations. Methods for pre-processing, clustering, and mini-batch updates and other adaptations for larger datasets are also included. For further details on the methods used in this package please see Ellis, Roy, and Datta (2023) <doi:10.3389/fgene.2023.1179439>.
Author: Dorothy Ellis [aut, cre] ,
Susmita Datta [ths],
Kenneth Perkins [ctb] ,
Renaud Gaujoux [ctb]
Maintainer: Dorothy Ellis <ddemoreellis@gmail.com>
Diff between jrSiCKLSNMF versions 1.2.1 dated 2023-07-06 and 1.2.2 dated 2025-02-12
DESCRIPTION | 10 MD5 | 34 NAMESPACE | 53 NEWS.md | 7 R/Data.R | 154 +- R/RcppExports.R | 118 +- R/jrSiCKLSNMF.R | 1906 +++++++++++++++++----------------- build/partial.rdb |binary build/vignette.rds |binary inst/REFERENCES.bib | 616 +++++----- inst/doc/Getting_Started.R | 138 +- inst/doc/Getting_Started.html | 994 ++++++++--------- inst/doc/Getting_Started_L2_Norm.R | 138 +- inst/doc/Getting_Started_L2_Norm.html | 996 ++++++++--------- inst/doc/Minibatch_jrSiCKLKSNMF.R | 134 +- inst/doc/Minibatch_jrSiCKLKSNMF.html | 938 ++++++++-------- man/PlotSickleJrUMAP.Rd | 2 src/jrSiCKLSNMF.cpp | 2 18 files changed, 3115 insertions(+), 3125 deletions(-)
Title: Draw Histograms and Restricted Cubic Splines (RCS)
Description: You can use this function to easily draw a combined histogram and restricted cubic spline.
The function draws the graph through 'ggplot2'. RCS fitting requires the use of the rcs() function of the 'rms' package.
Can fit cox regression, logistic regression. This method was described by Per Kragh (2003) <doi:10.1002/sim.1497>.
Author: Qiang LIU [aut, cre]
Maintainer: Qiang LIU <dege857@163.com>
Diff between ggrcs versions 0.4.2 dated 2024-09-24 and 0.4.3 dated 2025-02-12
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 1 + R/ggrcs.R | 4 ++-- R/ggrcs2.R | 4 ++-- inst/doc/ggrcs_vignette.html | 18 +++++++++--------- 6 files changed, 22 insertions(+), 21 deletions(-)
Title: Fit, Simulate and Diagnose Exponential-Family Random Graph
Models to Egocentrically Sampled Network Data
Description: Utilities for managing egocentrically sampled network data and a wrapper around the 'ergm' package to facilitate ERGM inference and simulation from such data. See Krivitsky and Morris (2017) <doi:10.1214/16-AOAS1010>.
Author: Pavel N. Krivitsky [aut, cre] ,
Steven M. Goodreau [ctb],
Martina Morris [ctb],
Kirk Li [ctb],
Emily N. Beylerian [ctb],
Michal Bojanowski [ctb] ,
Chad Klumb [ctb]
Maintainer: Pavel N. Krivitsky <pavel@statnet.org>
Diff between ergm.ego versions 1.1.1 dated 2024-11-07 and 1.1.2 dated 2025-02-12
ergm.ego-1.1.1/ergm.ego/tests/testthat/test-statmismatch.R |only ergm.ego-1.1.2/ergm.ego/DESCRIPTION | 16 +- ergm.ego-1.1.2/ergm.ego/LICENSE | 2 ergm.ego-1.1.2/ergm.ego/MD5 | 78 +++++----- ergm.ego-1.1.2/ergm.ego/R/EgoStat.R | 48 ++++-- ergm.ego-1.1.2/ergm.ego/R/EgoStat.duration.R | 2 ergm.ego-1.1.2/ergm.ego/R/EgoStat.node.attr.R | 2 ergm.ego-1.1.2/ergm.ego/R/InitErgmTerm.R | 2 ergm.ego-1.1.2/ergm.ego/R/control.ergm.ego.R | 2 ergm.ego-1.1.2/ergm.ego/R/control.simulate.ergm.ego.R | 2 ergm.ego-1.1.2/ergm.ego/R/degreedist.R | 21 +- ergm.ego-1.1.2/ergm.ego/R/egor.R | 2 ergm.ego-1.1.2/ergm.ego/R/ergm.ego.R | 2 ergm.ego-1.1.2/ergm.ego/R/fmhfit.R | 2 ergm.ego-1.1.2/ergm.ego/R/gof.ergm.ego.R | 2 ergm.ego-1.1.2/ergm.ego/R/predict.ergmego.R | 2 ergm.ego-1.1.2/ergm.ego/R/reweight.egor.R | 2 ergm.ego-1.1.2/ergm.ego/R/simulate.ergm.ego.R | 2 ergm.ego-1.1.2/ergm.ego/R/summary.ergm.ego.R | 2 ergm.ego-1.1.2/ergm.ego/R/summary.statistics.egor.R | 2 ergm.ego-1.1.2/ergm.ego/R/zzz.R | 2 ergm.ego-1.1.2/ergm.ego/build/stage23.rdb |binary ergm.ego-1.1.2/ergm.ego/inst/CITATION | 10 - ergm.ego-1.1.2/ergm.ego/inst/NEWS.Rd | 20 ++ ergm.ego-1.1.2/ergm.ego/man/mixingmatrix.egor.Rd | 14 + ergm.ego-1.1.2/ergm.ego/man/simulate.ergm.ego.Rd | 2 ergm.ego-1.1.2/ergm.ego/src/changestats.c | 2 ergm.ego-1.1.2/ergm.ego/src/include_stubs.c | 2 ergm.ego-1.1.2/ergm.ego/src/init.c | 2 ergm.ego-1.1.2/ergm.ego/tests/testthat.R | 2 ergm.ego-1.1.2/ergm.ego/tests/testthat/test-EgoStat.R | 7 ergm.ego-1.1.2/ergm.ego/tests/testthat/test-attrmismatch.R |only ergm.ego-1.1.2/ergm.ego/tests/testthat/test-boot_jack.R | 2 ergm.ego-1.1.2/ergm.ego/tests/testthat/test-coef_recovery.R | 2 ergm.ego-1.1.2/ergm.ego/tests/testthat/test-degreedist.R | 2 ergm.ego-1.1.2/ergm.ego/tests/testthat/test-drop.R | 2 ergm.ego-1.1.2/ergm.ego/tests/testthat/test-gof.ergm.ego.R | 2 ergm.ego-1.1.2/ergm.ego/tests/testthat/test-mixingmatrix.R | 24 ++- ergm.ego-1.1.2/ergm.ego/tests/testthat/test-netsize.adj.R | 2 ergm.ego-1.1.2/ergm.ego/tests/testthat/test-predict.ergm.ego.R | 2 ergm.ego-1.1.2/ergm.ego/tests/testthat/test-table_ppop.R | 2 41 files changed, 194 insertions(+), 102 deletions(-)
Title: Cluster Analysis with Missing Values by Multiple Imputation
Description: Allows clustering of incomplete observations by addressing missing values using multiple imputation. For achieving this goal, the methodology consists in three steps, following Audigier and Niang 2022 <doi:10.1007/s11634-022-00519-1>. I) Missing data imputation using dedicated models. Four multiple imputation methods are proposed, two are based on joint modelling and two are fully sequential methods, as discussed in Audigier et al. (2021) <doi:10.48550/arXiv.2106.04424>. II) cluster analysis of imputed data sets. Six clustering methods are available (distances-based or model-based), but custom methods can also be easily used. III) Partition pooling. The set of partitions is aggregated using Non-negative Matrix Factorization based method. An associated instability measure is computed by bootstrap (see Fang, Y. and Wang, J., 2012 <doi:10.1016/j.csda.2011.09.003>). Among applications, this instability measure can be used to choose a number of clusters with missing value [...truncated...]
Author: Vincent Audigier [aut, cre] ,
Hang Joon Kim [ctb]
Maintainer: Vincent Audigier <vincent.audigier@cnam.fr>
Diff between clusterMI versions 1.3 dated 2024-12-12 and 1.4.0 dated 2025-02-12
clusterMI-1.3/clusterMI/inst/doc/clusterMI.R |only clusterMI-1.3/clusterMI/inst/doc/clusterMI.Rmd |only clusterMI-1.3/clusterMI/inst/doc/clusterMI.html |only clusterMI-1.3/clusterMI/man/initfastnmf.Rd |only clusterMI-1.3/clusterMI/vignettes/biblio.bib |only clusterMI-1.3/clusterMI/vignettes/clusterMI.Rmd |only clusterMI-1.4.0/clusterMI/DESCRIPTION | 12 ++--- clusterMI-1.4.0/clusterMI/MD5 | 36 ++++++++--------- clusterMI-1.4.0/clusterMI/R/choosem.R | 5 +- clusterMI-1.4.0/clusterMI/R/choosenbclust.R | 5 +- clusterMI-1.4.0/clusterMI/R/cluster.intern.R | 3 - clusterMI-1.4.0/clusterMI/R/clusterMI.R | 3 - clusterMI-1.4.0/clusterMI/R/fastnmf.R | 6 +- clusterMI-1.4.0/clusterMI/R/initfastnmf.intern.R | 8 +-- clusterMI-1.4.0/clusterMI/R/overimpute.R | 3 - clusterMI-1.4.0/clusterMI/R/varselbest.intern.R | 3 - clusterMI-1.4.0/clusterMI/build/vignette.rds |binary clusterMI-1.4.0/clusterMI/inst/doc/clusterMI.pdf |only clusterMI-1.4.0/clusterMI/inst/doc/clusterMI.pdf.asis |only clusterMI-1.4.0/clusterMI/man/choosem.Rd | 2 clusterMI-1.4.0/clusterMI/man/choosenbclust.Rd | 2 clusterMI-1.4.0/clusterMI/man/fastnmf.Rd | 3 - clusterMI-1.4.0/clusterMI/man/initfastnmf.intern.Rd |only clusterMI-1.4.0/clusterMI/vignettes/clusterMI.pdf.asis |only 24 files changed, 49 insertions(+), 42 deletions(-)
Title: Bayesian Exposure-Response Analysis Tools
Description: Suite of tools that facilitate
exposure-response analysis using Bayesian methods. The package
provides a streamlined workflow for fitting types of models that are
commonly used in exposure-response analysis - linear and Emax for continuous
endpoints, logistic linear and logistic Emax for binary endpoints, as well
as performing simulation and visualization. Learn more about the workflow
at <https://genentech.github.io/BayesERbook/>.
Author: Kenta Yoshida [aut, cre] ,
Francois Mercier [aut] ,
Genentech, Inc. [cph]
Maintainer: Kenta Yoshida <yoshida.kenta.6@gmail.com>
Diff between BayesERtools versions 0.2.0 dated 2025-02-10 and 0.2.1 dated 2025-02-12
BayesERtools-0.2.0/BayesERtools/inst/doc/basic_workflow_bin.R |only BayesERtools-0.2.0/BayesERtools/inst/doc/basic_workflow_bin.Rmd |only BayesERtools-0.2.0/BayesERtools/inst/doc/basic_workflow_bin.html |only BayesERtools-0.2.0/BayesERtools/vignettes/basic_workflow_bin.Rmd |only BayesERtools-0.2.0/BayesERtools/vignettes/data/ermod_bin_cov_sel.rds |only BayesERtools-0.2.0/BayesERtools/vignettes/data/ermod_bin_cov_sel_kfold.rds |only BayesERtools-0.2.1/BayesERtools/DESCRIPTION | 16 BayesERtools-0.2.1/BayesERtools/MD5 | 98 +-- BayesERtools-0.2.1/BayesERtools/NEWS.md | 4 BayesERtools-0.2.1/BayesERtools/R/build_spec_coveff.R | 9 BayesERtools-0.2.1/BayesERtools/R/coveff.R | 30 - BayesERtools-0.2.1/BayesERtools/R/dev_ermod_emax.R | 8 BayesERtools-0.2.1/BayesERtools/R/dev_ermod_lin.R | 14 BayesERtools-0.2.1/BayesERtools/R/eval_ermod.R | 8 BayesERtools-0.2.1/BayesERtools/R/kfold_cv.R | 2 BayesERtools-0.2.1/BayesERtools/R/p_direction.R | 2 BayesERtools-0.2.1/BayesERtools/R/plot_ermod.R | 14 BayesERtools-0.2.1/BayesERtools/R/plot_ermod_exp_cov_sel.R | 4 BayesERtools-0.2.1/BayesERtools/R/sim_ermod.R | 106 --- BayesERtools-0.2.1/BayesERtools/README.md | 16 BayesERtools-0.2.1/BayesERtools/build/vignette.rds |binary BayesERtools-0.2.1/BayesERtools/inst/doc/overview_of_the_package.R | 3 BayesERtools-0.2.1/BayesERtools/inst/doc/overview_of_the_package.Rmd | 3 BayesERtools-0.2.1/BayesERtools/inst/doc/overview_of_the_package.html | 8 BayesERtools-0.2.1/BayesERtools/man/build_spec_coveff.Rd | 3 BayesERtools-0.2.1/BayesERtools/man/dev_ermod_bin.Rd | 4 BayesERtools-0.2.1/BayesERtools/man/dev_ermod_bin_cov_sel.Rd | 6 BayesERtools-0.2.1/BayesERtools/man/dev_ermod_bin_exp_sel.Rd | 2 BayesERtools-0.2.1/BayesERtools/man/dev_ermod_emax.Rd | 6 BayesERtools-0.2.1/BayesERtools/man/edit_spec_coveff.Rd | 5 BayesERtools-0.2.1/BayesERtools/man/eval_ermod.Rd | 3 BayesERtools-0.2.1/BayesERtools/man/p_direction.Rd | 2 BayesERtools-0.2.1/BayesERtools/man/plot_cov_sel.Rd | 2 BayesERtools-0.2.1/BayesERtools/man/plot_coveff.Rd | 5 BayesERtools-0.2.1/BayesERtools/man/plot_er.Rd | 5 BayesERtools-0.2.1/BayesERtools/man/plot_er_exp_sel.Rd | 3 BayesERtools-0.2.1/BayesERtools/man/plot_er_gof.Rd | 5 BayesERtools-0.2.1/BayesERtools/man/print_coveff.Rd | 5 BayesERtools-0.2.1/BayesERtools/man/run_kfold_cv.Rd | 3 BayesERtools-0.2.1/BayesERtools/man/sim_coveff.Rd | 5 BayesERtools-0.2.1/BayesERtools/man/sim_er_new_exp.Rd | 2 BayesERtools-0.2.1/BayesERtools/man/sim_er_new_exp_marg.Rd | 2 BayesERtools-0.2.1/BayesERtools/tests/testthat/Rplots.pdf |binary BayesERtools-0.2.1/BayesERtools/tests/testthat/test-build_spec_coveff.R | 153 ++--- BayesERtools-0.2.1/BayesERtools/tests/testthat/test-coveff.R | 183 +++--- BayesERtools-0.2.1/BayesERtools/tests/testthat/test-dev_ermod_emax.R | 40 - BayesERtools-0.2.1/BayesERtools/tests/testthat/test-dev_ermod_lin.R | 293 +++++----- BayesERtools-0.2.1/BayesERtools/tests/testthat/test-ermod-methods.R | 61 ++ BayesERtools-0.2.1/BayesERtools/tests/testthat/test-eval_ermod.R | 256 ++++---- BayesERtools-0.2.1/BayesERtools/tests/testthat/test-kfold_cv.R | 55 + BayesERtools-0.2.1/BayesERtools/tests/testthat/test-p_direction.R | 89 +-- BayesERtools-0.2.1/BayesERtools/tests/testthat/test-plot_ermod.R | 105 ++- BayesERtools-0.2.1/BayesERtools/vignettes/overview_of_the_package.Rmd | 3 53 files changed, 916 insertions(+), 735 deletions(-)
Title: Visualize the Climate Scenario Alignment of a Financial
Portfolio
Description: Create plots to visualize the alignment of a corporate
lending financial portfolio to climate change scenarios based on
climate indicators (production and emission intensities) across key
climate relevant sectors of the 'PACTA' methodology (Paris Agreement Capital
Transition Assessment; <https://www.transitionmonitor.com/>).
Financial institutions use 'PACTA' to study how their capital
allocation decisions align with climate change mitigation goals.
Author: Monika Furdyna [aut, ctr, cre]
,
Mauro Lepore [aut, ctr] ,
Alex Axthelm [aut, ctr] ,
RMI [cph, fnd]
Maintainer: Monika Furdyna <monika.furdyna@gmail.com>
Diff between r2dii.plot versions 0.4.0 dated 2024-02-29 and 0.5.0 dated 2025-02-12
r2dii.plot-0.4.0/r2dii.plot/tests/testthat/Rplots.pdf |only r2dii.plot-0.5.0/r2dii.plot/DESCRIPTION | 19 +++-- r2dii.plot-0.5.0/r2dii.plot/MD5 | 32 +++++----- r2dii.plot-0.5.0/r2dii.plot/NEWS.md | 15 ++++ r2dii.plot-0.5.0/r2dii.plot/R/data_dictionary.R |only r2dii.plot-0.5.0/r2dii.plot/R/scale_colour_r2dii.R | 30 ++++++++- r2dii.plot-0.5.0/r2dii.plot/R/scale_colour_r2dii_sector.R | 30 ++++++++- r2dii.plot-0.5.0/r2dii.plot/R/scale_colour_r2dii_tech.R | 30 ++++++++- r2dii.plot-0.5.0/r2dii.plot/README.md | 4 - r2dii.plot-0.5.0/r2dii.plot/data/data_dictionary.rda |only r2dii.plot-0.5.0/r2dii.plot/inst/WORDLIST | 5 + r2dii.plot-0.5.0/r2dii.plot/man/data_dictionary.Rd |only r2dii.plot-0.5.0/r2dii.plot/man/figures/README-unnamed-chunk-2-1.png |binary r2dii.plot-0.5.0/r2dii.plot/man/figures/README-unnamed-chunk-3-1.png |binary r2dii.plot-0.5.0/r2dii.plot/man/r2dii.plot-package.Rd | 4 - r2dii.plot-0.5.0/r2dii.plot/tests/testthat/test-plot_trajectory.R | 10 ++- r2dii.plot-0.5.0/r2dii.plot/tests/testthat/test-prep_emission_intensity.R | 9 ++ r2dii.plot-0.5.0/r2dii.plot/tests/testthat/test-prep_techmix.R | 9 ++ r2dii.plot-0.5.0/r2dii.plot/tests/testthat/test-prep_trajectory.R | 9 ++ 19 files changed, 169 insertions(+), 37 deletions(-)
Title: Convenient Data Exchange with Microsoft Excel
Description: Allows access to data in running instance of Microsoft Excel
(e. g. 'xl[a1] = xl[b2]*3' and so on). Graphics can be transferred with
'xl[a1] = current.graphics()'. Additionally there are function for reading/writing
'Excel' files - 'xl.read.file'/'xl.save.file'. They are not fast but able to read/write
'*.xlsb'-files and password-protected files. There is an Excel workbook with
examples of calling R from Excel in the 'doc' folder. It tries to keep things as
simple as possible - there are no needs in any additional
installations besides R, only 'VBA' code in the Excel workbook.
Microsoft Excel is required for this package.
Author: Gregory Demin [cre],
Duncan Lang [aut]
Maintainer: Gregory Demin <excel.link.feedback@gmail.com>
Diff between excel.link versions 0.9.13 dated 2024-07-07 and 0.9.15 dated 2025-02-12
DESCRIPTION | 21 +++++++++++++++------ MD5 | 14 +++++++------- NEWS | 4 ++++ build/vignette.rds |binary inst/doc/CallingRFromExcel.html | 4 ++-- man/excel.link-package.Rd | 9 +++++++++ src/COMError.cpp | 28 ++++++++++++++++++++-------- src/RCOMObject.h | 2 +- 8 files changed, 58 insertions(+), 24 deletions(-)
Title: Risk-Based Control Charts
Description: Univariate and multivariate versions of risk-based control charts. Univariate versions of control charts, such as the risk-based version of X-bar, Moving Average (MA), Exponentially Weighted Moving Average Control Charts (EWMA), and Cumulative Sum Control Charts (CUSUM) charts. The risk-based version of the multivariate T2 control chart. Plot and summary functions. Kosztyan et. al. (2016) <doi:10.1016/j.eswa.2016.06.019>.
Author: Aamir Saghir [aut],
Attila Imre Katona [aut],
Zsolt Tibor Kosztyan [aut, cre]
Maintainer: Zsolt Tibor Kosztyan <kosztyan.zsolt@gtk.uni-pannon.hu>
Diff between rbcc versions 0.1.3 dated 2024-11-05 and 0.1.4 dated 2025-02-12
DESCRIPTION | 12 - MD5 | 74 ++++++----- NAMESPACE | 3 R/data_gen.R | 9 - R/plot.rbcc.R | 139 +++++---------------- R/plot.rbcusumcc.R |only R/plot.rbmcc.R |only R/print.rbcc.R |only R/print.rbcusumcc.R |only R/print.rbmcc.R |only R/rbcc.R | 306 ++++++++++++++++++++++++----------------------- R/rbcc_opt.R | 47 ++----- R/rbcusumcc.R | 178 +++++++++++++-------------- R/rbcusumcc_opt.R | 71 +++++----- R/rbewmacc.R | 24 ++- R/rbewmacc_opt.R | 19 +- R/rbmacc.R | 26 ++- R/rbmacc_opt.R | 70 ++++------ R/rbmcc.R | 22 +-- R/rbmcc_opt.R | 29 +--- R/summary.rbcc.R | 189 ++++++----------------------- R/summary.rbcusumcc.R |only R/summary.rbmcc.R |only man/data_gen.Rd | 17 -- man/plot.rbcc.Rd | 68 ---------- man/plot.rbcusumcc.Rd |only man/plot.rbmcc.Rd |only man/print.rbcc.Rd |only man/print.rbcusumcc.Rd |only man/print.rbmcc.Rd |only man/rbcc-package.Rd | 4 man/rbcc.Rd | 62 --------- man/rbcc_opt.Rd | 62 --------- man/rbcusumcc.Rd | 10 - man/rbcusumcc_opt.Rd | 6 man/rbewmacc.Rd | 20 +-- man/rbewmacc_opt.Rd | 6 man/rbmacc.Rd | 18 +- man/rbmacc_opt.Rd | 4 man/rbmcc.Rd | 10 - man/rbmcc_opt.Rd | 6 man/summary.rbcc.Rd | 75 +---------- man/summary.rbcusumcc.Rd |only man/summary.rbmcc.Rd |only man/t2uc.Rd | 89 ++++++------- 45 files changed, 617 insertions(+), 1058 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-21 0.2.0
2019-04-09 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-10-26 1.7.1
2022-08-18 1.7.0
2022-07-07 1.6.2
2020-05-29 1.6.0
2020-04-25 1.5.7
2020-04-02 1.5.6
2020-03-24 1.5.5
2020-01-26 1.5.3
2019-07-22 1.5.2
2019-07-21 1.5.1
2019-07-14 1.5.0
2019-03-04 1.4.5
2019-01-02 1.4.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-01-24 9.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-02-19 2.1.4
2018-03-02 2.1.3
2017-10-10 2.1.2
2017-07-21 2.1.1
2017-07-03 2.1.0
2016-03-17 2.0
2014-01-22 1.2
2013-07-12 1.1
2013-06-21 1.0
2012-03-18 0.8
2012-02-23 0.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-03-01 3.7.3
2023-07-06 3.7.2
2022-10-05 3.7.1
2020-08-11 3.7.0
2020-07-25 3.6.4
2018-08-15 3.6.3
2018-06-21 3.6.2
2017-04-16 3.6.1
2017-04-09 3.6.0
2017-01-10 3.5.3
2016-03-30 3.5.2
2016-03-25 3.5.1
2016-02-28 3.5.0
2016-01-01 3.4.0
2015-12-21 3.3.1
2015-09-28 3.3.0
2015-08-26 3.2.0
2015-05-05 3.1.0
2015-03-16 3.0.0
2014-12-11 2.1.1
2014-12-03 2.1.0
2014-10-27 2.0.0
2014-06-14 1.7.0
2014-06-02 1.6.0
2014-05-11 1.5.0
2014-03-30 1.4.0
2014-03-15 1.3.0
2014-03-06 1.2.0
2014-02-06 1.1.0
Title: Functions for Extracting and Merging Data in the 'teal'
Framework
Description: A standardized user interface for column selection, that
facilitates dataset merging in 'teal' framework.
Author: Dawid Kaledkowski [aut, cre],
Pawel Rucki [aut],
Mahmoud Hallal [aut],
Nikolas Burkoff [aut],
Maciej Nasinski [aut],
Konrad Pagacz [aut],
Junlue Zhao [aut],
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Dawid Kaledkowski <dawid.kaledkowski@roche.com>
Diff between teal.transform versions 0.5.0 dated 2024-02-17 and 0.6.0 dated 2025-02-12
teal.transform-0.5.0/teal.transform/R/all_choices.R |only teal.transform-0.5.0/teal.transform/R/data.R |only teal.transform-0.5.0/teal.transform/data |only teal.transform-0.5.0/teal.transform/inst/doc/data-extract-merge.R |only teal.transform-0.5.0/teal.transform/inst/doc/data-extract-merge.Rmd |only teal.transform-0.5.0/teal.transform/inst/doc/data-extract-merge.html |only teal.transform-0.5.0/teal.transform/man/all_choices.Rd |only teal.transform-0.5.0/teal.transform/man/rADAE.Rd |only teal.transform-0.5.0/teal.transform/man/rADLB.Rd |only teal.transform-0.5.0/teal.transform/man/rADRS.Rd |only teal.transform-0.5.0/teal.transform/man/rADSL.Rd |only teal.transform-0.5.0/teal.transform/man/rADTTE.Rd |only teal.transform-0.5.0/teal.transform/tests/testthat/test-all_choices.R |only teal.transform-0.5.0/teal.transform/vignettes/data-extract-merge.Rmd |only teal.transform-0.6.0/teal.transform/DESCRIPTION | 34 - teal.transform-0.6.0/teal.transform/MD5 | 175 +++--- teal.transform-0.6.0/teal.transform/NAMESPACE | 4 teal.transform-0.6.0/teal.transform/NEWS.md | 10 teal.transform-0.6.0/teal.transform/R/call_utils.R | 10 teal.transform-0.6.0/teal.transform/R/choices_labeled.R | 19 teal.transform-0.6.0/teal.transform/R/choices_selected.R | 32 - teal.transform-0.6.0/teal.transform/R/data_extract_filter_module.R | 15 teal.transform-0.6.0/teal.transform/R/data_extract_module.R | 21 teal.transform-0.6.0/teal.transform/R/data_extract_read_module.R | 8 teal.transform-0.6.0/teal.transform/R/data_extract_single_module.R | 6 teal.transform-0.6.0/teal.transform/R/data_extract_spec.R | 1 teal.transform-0.6.0/teal.transform/R/delayed_choices.R |only teal.transform-0.6.0/teal.transform/R/filter_spec.R | 20 teal.transform-0.6.0/teal.transform/R/format_data_extract.R | 1 teal.transform-0.6.0/teal.transform/R/get_dplyr_call.R | 20 teal.transform-0.6.0/teal.transform/R/get_merge_call.R | 30 - teal.transform-0.6.0/teal.transform/R/merge_datasets.R | 6 teal.transform-0.6.0/teal.transform/R/merge_expression_module.R | 8 teal.transform-0.6.0/teal.transform/R/resolve.R | 5 teal.transform-0.6.0/teal.transform/R/resolve_delayed.R | 3 teal.transform-0.6.0/teal.transform/R/select_spec.R | 18 teal.transform-0.6.0/teal.transform/R/utils.R | 11 teal.transform-0.6.0/teal.transform/R/zzz.R | 1 teal.transform-0.6.0/teal.transform/README.md | 11 teal.transform-0.6.0/teal.transform/build/vignette.rds |binary teal.transform-0.6.0/teal.transform/inst/WORDLIST | 1 teal.transform-0.6.0/teal.transform/inst/doc/combining-data-extract-with-data-merge.R |only teal.transform-0.6.0/teal.transform/inst/doc/combining-data-extract-with-data-merge.Rmd |only teal.transform-0.6.0/teal.transform/inst/doc/combining-data-extract-with-data-merge.html |only teal.transform-0.6.0/teal.transform/inst/doc/data-extract.R | 38 + teal.transform-0.6.0/teal.transform/inst/doc/data-extract.Rmd | 36 + teal.transform-0.6.0/teal.transform/inst/doc/data-extract.html | 117 ++-- teal.transform-0.6.0/teal.transform/inst/doc/data-merge.R | 74 ++ teal.transform-0.6.0/teal.transform/inst/doc/data-merge.Rmd | 61 +- teal.transform-0.6.0/teal.transform/inst/doc/data-merge.html | 251 +++++----- teal.transform-0.6.0/teal.transform/inst/doc/teal-transform.Rmd | 4 teal.transform-0.6.0/teal.transform/inst/doc/teal-transform.html | 6 teal.transform-0.6.0/teal.transform/man/call_extract_array.Rd | 6 teal.transform-0.6.0/teal.transform/man/call_extract_matrix.Rd | 4 teal.transform-0.6.0/teal.transform/man/choices_labeled.Rd | 6 teal.transform-0.6.0/teal.transform/man/choices_selected.Rd | 28 - teal.transform-0.6.0/teal.transform/man/compose_and_enable_validators.Rd | 7 teal.transform-0.6.0/teal.transform/man/data_extract_multiple_srv.Rd | 7 teal.transform-0.6.0/teal.transform/man/data_extract_spec.Rd | 1 teal.transform-0.6.0/teal.transform/man/data_extract_srv.Rd | 1 teal.transform-0.6.0/teal.transform/man/data_extract_ui.Rd | 3 teal.transform-0.6.0/teal.transform/man/delayed_choices.Rd |only teal.transform-0.6.0/teal.transform/man/extract_choices_labels.Rd | 2 teal.transform-0.6.0/teal.transform/man/filter_spec.Rd | 10 teal.transform-0.6.0/teal.transform/man/filter_spec_internal.Rd | 8 teal.transform-0.6.0/teal.transform/man/format_data_extract.Rd | 1 teal.transform-0.6.0/teal.transform/man/get_dplyr_call.Rd | 2 teal.transform-0.6.0/teal.transform/man/get_merge_key_i.Rd | 2 teal.transform-0.6.0/teal.transform/man/get_rename_call.Rd | 2 teal.transform-0.6.0/teal.transform/man/get_reshape_call.Rd | 2 teal.transform-0.6.0/teal.transform/man/merge_expression_module.Rd | 2 teal.transform-0.6.0/teal.transform/man/merge_expression_srv.Rd | 2 teal.transform-0.6.0/teal.transform/man/parse_merge_key_i.Rd | 2 teal.transform-0.6.0/teal.transform/man/resolve_delayed.Rd | 3 teal.transform-0.6.0/teal.transform/man/select_spec.Rd | 14 teal.transform-0.6.0/teal.transform/man/value_choices.Rd | 4 teal.transform-0.6.0/teal.transform/man/variable_choices.Rd | 3 teal.transform-0.6.0/teal.transform/tests/testthat/setup-logger.R |only teal.transform-0.6.0/teal.transform/tests/testthat/setup-options.R |only teal.transform-0.6.0/teal.transform/tests/testthat/test-choices_selected.R | 18 teal.transform-0.6.0/teal.transform/tests/testthat/test-data_extract_module.R | 4 teal.transform-0.6.0/teal.transform/tests/testthat/test-data_extract_multiple_srv.R | 6 teal.transform-0.6.0/teal.transform/tests/testthat/test-data_extract_spec.R | 4 teal.transform-0.6.0/teal.transform/tests/testthat/test-data_extract_srv.R | 15 teal.transform-0.6.0/teal.transform/tests/testthat/test-delayed_choices.R |only teal.transform-0.6.0/teal.transform/tests/testthat/test-delayed_data_extract.R | 8 teal.transform-0.6.0/teal.transform/tests/testthat/test-dplyr_call_examples.R | 2 teal.transform-0.6.0/teal.transform/tests/testthat/test-filter_spec.R | 33 - teal.transform-0.6.0/teal.transform/tests/testthat/test-get_filter_call-datasets.R | 34 - teal.transform-0.6.0/teal.transform/tests/testthat/test-resolve.R | 4 teal.transform-0.6.0/teal.transform/tests/testthat/test-resolve_delayed.R | 16 teal.transform-0.6.0/teal.transform/tests/testthat/test-select_spec.R | 24 teal.transform-0.6.0/teal.transform/tests/testthat/test-value_choices.R | 4 teal.transform-0.6.0/teal.transform/tests/testthat/test-variable_choices.R | 4 teal.transform-0.6.0/teal.transform/vignettes/combining-data-extract-with-data-merge.Rmd |only teal.transform-0.6.0/teal.transform/vignettes/data-extract.Rmd | 36 + teal.transform-0.6.0/teal.transform/vignettes/data-merge.Rmd | 61 +- teal.transform-0.6.0/teal.transform/vignettes/teal-transform.Rmd | 4 98 files changed, 816 insertions(+), 640 deletions(-)
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